Citrus Sinensis ID: 008454
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 565 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SZ10 | 521 | Pentatricopeptide repeat- | yes | no | 0.851 | 0.923 | 0.638 | 0.0 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.821 | 0.621 | 0.322 | 2e-68 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.826 | 0.630 | 0.302 | 2e-64 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.792 | 0.614 | 0.301 | 1e-58 | |
| O04504 | 606 | Pentatricopeptide repeat- | no | no | 0.785 | 0.732 | 0.307 | 7e-57 | |
| Q9FKR3 | 596 | Pentatricopeptide repeat- | no | no | 0.738 | 0.699 | 0.299 | 1e-55 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.787 | 0.406 | 0.290 | 2e-55 | |
| Q9ZQF1 | 627 | Pentatricopeptide repeat- | no | no | 0.796 | 0.717 | 0.285 | 2e-55 | |
| Q9SAA6 | 657 | Pentatricopeptide repeat- | no | no | 0.814 | 0.700 | 0.282 | 7e-53 | |
| P0C894 | 761 | Putative pentatricopeptid | no | no | 0.796 | 0.591 | 0.303 | 1e-52 |
| >sp|Q9SZ10|PP338_ARATH Pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/481 (63%), Positives = 384/481 (79%)
Query: 65 PIPHRTLPEPKGQDLDFVNIAYSHLIHSDWKKLTALSTHLTPFRVKHVLLKVQKDYVLSL 124
PIPHR PEPKGQDLDFVN+A+SHLI SDW KL LS HL FRVK+VLLK+QKDY+LSL
Sbjct: 40 PIPHRRNPEPKGQDLDFVNVAHSHLIQSDWDKLNKLSDHLDSFRVKNVLLKIQKDYLLSL 99
Query: 125 EFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILY 184
EFF W +T P S +LETH+IVLH LTKNRKFKS+ESILR +L + DLP+K+FD++LY
Sbjct: 100 EFFNWAKTRNPGSHSLETHAIVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDALLY 159
Query: 185 SYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERV 244
SYR CDS+P VFD LFKT+AH KKFRNATDTF QM+DYGFLP +ESCN ++SSLL RV
Sbjct: 160 SYRECDSTPRVFDSLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRV 219
Query: 245 DIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTL 304
DIAL FY+EMRR +ISPN YTLNMVM +C+ G +++ +E+ ++ME +GF + +YNTL
Sbjct: 220 DIALRFYREMRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTL 279
Query: 305 ISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNV 364
I+GHC KGLLS A+K KN+M K+G+QPNV+TFNTLI GFC+ KL EA+++F EMKA NV
Sbjct: 280 IAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNV 339
Query: 365 SPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAY 424
+PN VTYNTLINGY Q G+ EM YE+M+ NGI+ DILTYNALI GLCK+ KT+KAA
Sbjct: 340 APNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQ 399
Query: 425 LVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFC 484
VK+LDK +LVPN+ST+SALI GQCVRKN++R F+LYKSMIRSGC PN+ F ML+S FC
Sbjct: 400 FVKELDKENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFC 459
Query: 485 QNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGF 544
+NEDFD A++VL EM+ + + DS + ++ +GL H GKD+L KL ++ME + L + F
Sbjct: 460 RNEDFDGASQVLREMVRRSIPLDSRTVHQVCNGLKHQGKDQLVKKLLQEMEGKKFLQESF 519
Query: 545 D 545
+
Sbjct: 520 N 520
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 260 bits (664), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 163/505 (32%), Positives = 255/505 (50%), Gaps = 41/505 (8%)
Query: 96 KLTALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRK 155
+L LS + TP ++LLK Q D L L+F W H+ TL I LHILTK +
Sbjct: 38 QLHHLSANFTPEAASNLLLKSQNDQALILKFLNWANPHQ--FFTLRCKCITLHILTKFKL 95
Query: 156 FKSSESILRGILDSDSFD--LPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNAT 213
+K+++ IL + + + D S +F S+ +Y +C S+ VFDL+ K+Y+ A
Sbjct: 96 YKTAQ-ILAEDVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKAL 154
Query: 214 DTFCQMRDYGFLPIIESCNKFLSSLLDSER-VDIALGFYKEMRRNRISPNVYTLNMVMHA 272
+ +GF+P + S N L + + S+R + A +KEM +++SPNV+T N+++
Sbjct: 155 SIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRG 214
Query: 273 FCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPN 332
FC G I+ A+ +F ME+ G +P+V TYNTLI G+C + K M G++PN
Sbjct: 215 FCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPN 274
Query: 333 VITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYE 392
+I++N +I G C++G++ E + + +EM S + VTYNTLI GY + GN ++
Sbjct: 275 LISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHA 334
Query: 393 EMLRNGIKVDILTYNALILGLCKEGKTKKA------------------------------ 422
EMLR+G+ ++TY +LI +CK G +A
Sbjct: 335 EMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKG 394
Query: 423 ----AYLV-KDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFE 477
AY V ++++ N P+ TY+ALI G CV E A + + M G P+ +
Sbjct: 395 YMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYS 454
Query: 478 MLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537
++S FC++ D D A V EM+EK + PD+I S L G + + A L+ +M
Sbjct: 455 TVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRV 514
Query: 538 GLLPKGFDKLRTINCAPENGEKESG 562
GL P F IN G+ E
Sbjct: 515 GLPPDEFTYTALINAYCMEGDLEKA 539
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 247 bits (630), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/489 (30%), Positives = 256/489 (52%), Gaps = 22/489 (4%)
Query: 65 PIPHRTLPEPKGQDLDFVNIAYSHLIHSDWKKLTALSTHLTPFRVK-------HVLLKVQ 117
P P + + +D +FV+ +++I ++ L L P+ K VL+K++
Sbjct: 42 PFPDYSPKKASVRDTEFVH-QITNVIK--LRRAEPLRRSLKPYECKFKTDHLIWVLMKIK 98
Query: 118 KDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILD------SDS 171
DY L L+FF W ++ + S+L E+ IV+H+ ++ K ++S++ + +DS
Sbjct: 99 CDYRLVLDFFDWARSRRDSNL--ESLCIVIHLAVASKDLKVAQSLISSFWERPKLNVTDS 156
Query: 172 FDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESC 231
F + FD ++Y+Y+ S P VFD+ F+ R A F +M +YG + ++SC
Sbjct: 157 F---VQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSC 213
Query: 232 NKFLSSL-LDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNME 290
N +L+ L D + A+ ++E + NV + N+V+H C+LG I+ A + ME
Sbjct: 214 NVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLME 273
Query: 291 SMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLH 350
G+ P V +Y+T+++G+C G L K +M++ G++PN + ++I C+ KL
Sbjct: 274 LKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLA 333
Query: 351 EANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALI 410
EA FSEM + P+ V Y TLI+G+ + G+ + + EM I D+LTY A+I
Sbjct: 334 EAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAII 393
Query: 411 LGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCR 470
G C+ G +A L ++ L P++ T++ LI G C + + AF+++ MI++GC
Sbjct: 394 SGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCS 453
Query: 471 PNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKL 530
PN + L+ C+ D D A E+L EM + + P+ + + +GL G E A+KL
Sbjct: 454 PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL 513
Query: 531 FRKMEIRGL 539
+ E GL
Sbjct: 514 VGEFEAAGL 522
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 228 bits (580), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/467 (30%), Positives = 238/467 (50%), Gaps = 19/467 (4%)
Query: 103 HLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKP----SSLTLETHSIVLHILTKNRKFKS 158
L P V VL + + D L F + H P +SL+L S ++HIL ++ +
Sbjct: 75 RLNPLAVVEVLYRCRNDLTLGQRFVDQLGFHFPNFKHTSLSL---SAMIHILVRSGRLSD 131
Query: 159 SES-ILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFC 217
++S +LR I S L ++ +S+ ++ C S+ VFDLL +TY +K R A + F
Sbjct: 132 AQSCLLRMIRRSGVSRL--EIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFT 189
Query: 218 QMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG 277
+R GF I++CN + SL+ V++A G Y+E+ R+ + NVYTLN++++A CK G
Sbjct: 190 LLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDG 249
Query: 278 IIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFN 337
+E+ ++ G P + TYNTLIS + +KGL+ A + N M G P V T+N
Sbjct: 250 KMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYN 309
Query: 338 TLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRN 397
T+I G CK GK A +F+EM + +SP+ TY +L+ + G+ ++ +M
Sbjct: 310 TVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSR 369
Query: 398 GIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERA 457
+ D++ +++++ + G KA + + L+P+ Y+ LI G C + A
Sbjct: 370 DVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVA 429
Query: 458 FQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSG 517
L M++ GC + + ++ C+ + A ++ EM E+ + PDS L+ L G
Sbjct: 430 MNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDG 489
Query: 518 LHHCGKDELAMKLFRKMEIRGL---------LPKGFDKLRTINCAPE 555
G + AM+LF+KM+ + + L GF K+ I+ A E
Sbjct: 490 HCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKE 536
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820 OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 222 bits (565), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 140/455 (30%), Positives = 225/455 (49%), Gaps = 11/455 (2%)
Query: 94 WKKLTALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKN 153
W KL T + P + L+ + D L L +++W+ + S++LE +LH L
Sbjct: 55 WSKLGVHVTDINPNELFRQLISSELDPDLCLRYYSWLVKNSDISVSLELTFKLLHSLANA 114
Query: 154 RKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDS---SPLVFDLLFKTYAHRKKFR 210
+++ S L G + + S SI ++ MCD+ + ++ D+L YA+ +F
Sbjct: 115 KRYSKIRSFLDGFVRNGS----DHQVHSIFHAISMCDNVCVNSIIADMLVLAYANNSRFE 170
Query: 211 NATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVM 270
+ F + YG+ SC + +LL R YKEM R +I PNV+T N+V+
Sbjct: 171 LGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQPNVFTFNVVI 230
Query: 271 HAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHC---NKGLLSLAMKFKNLMEKN 327
+A CK G + +A +V ++M+ G P+V +YNTLI G+C G + A M +N
Sbjct: 231 NALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVEN 290
Query: 328 GIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMG 387
+ PN+ TFN LI GF K L + ++F EM +V PNV++YN+LING G
Sbjct: 291 DVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEA 350
Query: 388 ASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITG 447
S+ ++M+ G++ +++TYNALI G CK K+A + + VP Y+ LI
Sbjct: 351 ISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDA 410
Query: 448 QCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPD 507
C + F L + M R G P+ + L++ C+N + + AA+ L + L PD
Sbjct: 411 YCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIE-AAKKLFDQLTSKGLPD 469
Query: 508 SIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPK 542
+ L G G+ A L ++M GL P+
Sbjct: 470 LVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPR 504
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730 OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (554), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 125/418 (29%), Positives = 221/418 (52%), Gaps = 1/418 (0%)
Query: 122 LSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDS 181
LS FF W + S +L++ ++ ILTK++ FK++ +L + + P L
Sbjct: 62 LSWSFFIWTDSLPSSKHSLQSSWKMILILTKHKHFKTAHQLLDKLAQRELLSSPLVLRSL 121
Query: 182 ILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDS 241
+ + VF L YA ++ F Q+R G P +++C L+SL+
Sbjct: 122 VGGVSEDPEDVSHVFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQ 181
Query: 242 ERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTY 301
D +K+M + + N++ N+++HA K G E+A ++ ME G P + TY
Sbjct: 182 RLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTY 241
Query: 302 NTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKA 361
NTLIS +C K + A+ ++ ME++G+ PN++T+N+ I GF ++G++ EA R+F E+K
Sbjct: 242 NTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIK- 300
Query: 362 TNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKK 421
+V+ N VTY TLI+GY ++ + + L E M G ++TYN+++ LC++G+ ++
Sbjct: 301 DDVTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIRE 360
Query: 422 AAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMS 481
A L+ ++ + P+ T + LI C ++ A ++ K MI SG + + + ++ L+
Sbjct: 361 ANRLLTEMSGKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIH 420
Query: 482 TFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGL 539
FC+ + + A E L M+EK +P S L G ++ K + KL + E RGL
Sbjct: 421 GFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGL 478
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 135/465 (29%), Positives = 229/465 (49%), Gaps = 20/465 (4%)
Query: 86 YSHLIHSDWKKLTALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSI 145
Y+ L W L + R+ H L+L+F WV +P LET I
Sbjct: 24 YNILTIDRWGSLNHMDYRQARLRLVH--------GKLALKFLKWV-VKQPG---LETDHI 71
Query: 146 V------LHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLL 199
V HIL + R + + IL+ + S S +F +++ +YR+C+S+P V+D+L
Sbjct: 72 VQLVCITTHILVRARMYDPARHILKEL--SLMSGKSSFVFGALMTTYRLCNSNPSVYDIL 129
Query: 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRI 259
+ Y +++ + F M YGF P + +CN L S++ S F KEM + +I
Sbjct: 130 IRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKI 189
Query: 260 SPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMK 319
P+V T N++++ C G E++ + + ME G+ P++ TYNT++ +C KG A++
Sbjct: 190 CPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIE 249
Query: 320 FKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYG 379
+ M+ G+ +V T+N LI C+ ++ + + +M+ + PN VTYNTLING+
Sbjct: 250 LLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFS 309
Query: 380 QVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNAS 439
G + + L EML G+ + +T+NALI G EG K+A + ++ L P+
Sbjct: 310 NEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEV 369
Query: 440 TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEM 499
+Y L+ G C + A Y M R+G + + ++ C+N D A +L EM
Sbjct: 370 SYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEM 429
Query: 500 LEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGF 544
+ + PD + S L +G G+ + A ++ ++ GL P G
Sbjct: 430 SKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGI 474
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (552), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 132/462 (28%), Positives = 235/462 (50%), Gaps = 12/462 (2%)
Query: 92 SDWKKLTALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILT 151
S W + ++ LTP V LL + K L+ F + ++ L +T + + +++
Sbjct: 57 SQWHIVEHVADKLTPSLVSTTLLSLVKTPNLAFNFVNHIDLYR---LDFQTQCLAIAVIS 113
Query: 152 KNRKFKSSESILRGILDSDSFDLPSKLFDSILYSY-RMCDSSPLVFDLLFKTYAHRKKFR 210
K K +L+ ++ S + LFD ++ ++ R+ S ++FDLL + +
Sbjct: 114 KLSSPKPVTQLLKEVVTSRKNSI-RNLFDELVLAHDRLETKSTILFDLLVRCCCQLRMVD 172
Query: 211 NATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVM 270
A + F M++ GF P E+CN L+ L R++ A FY +M R I NVYT N+++
Sbjct: 173 EAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMI 232
Query: 271 HAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQ 330
+ CK G +++A ME G P++ TYNTL+ G +G + A + M+ G Q
Sbjct: 233 NVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQ 292
Query: 331 PNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASL 390
P++ T+N ++ C +G+ A+ + EMK + P+ V+YN LI G G+ EM +
Sbjct: 293 PDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAY 349
Query: 391 YEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCV 450
+EM++ G+ TYN LI GL E K + A L++++ + +V ++ TY+ LI G C
Sbjct: 350 RDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQ 409
Query: 451 RKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSII 510
++++AF L+ M+ G +P + + L+ C+ A E+ +++ K M PD ++
Sbjct: 410 HGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVM 469
Query: 511 LSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINC 552
++ L G G + A L ++M++ + P T NC
Sbjct: 470 MNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDV----TYNC 507
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SAA6|PPR34_ARATH Pentatricopeptide repeat-containing protein At1g11710, mitochondrial OS=Arabidopsis thaliana GN=At1g11710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (531), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 133/470 (28%), Positives = 230/470 (48%), Gaps = 10/470 (2%)
Query: 72 PEPKGQDLDFVNIAYSHLIHSDWKKLTALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWV- 130
PEP +D+ F + +L W L S+ LT + VL + + L+LEF+ WV
Sbjct: 26 PEP--EDILFSALCL-NLRQRRWNTLHQFSSSLTNPLISRVLREFRSSPKLALEFYNWVL 82
Query: 131 --QTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDL-PSKLFDSILYSYR 187
T S E +++H+L +R+F + SI+ ++ + L P + ++ SY+
Sbjct: 83 RSNTVAKSENRFEASCVMIHLLVGSRRFDDALSIMANLMSVEGEKLSPLHVLSGLIRSYQ 142
Query: 188 MCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIA 247
C SSP VFD L + + A + Q R GF + + N F+ LL+ +D
Sbjct: 143 ACGSSPDVFDSLVRACTQNGDAQGAYEVIEQTRAEGFCVSVHALNNFMGCLLNVNEIDRF 202
Query: 248 LGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISG 307
YKEM NV T N+V+++FCK + A+ VF M G P+V ++N +I G
Sbjct: 203 WKVYKEMDSLGYVENVNTFNLVIYSFCKESKLFEALSVFYRMLKCGVWPNVVSFNMMIDG 262
Query: 308 HCNKGLLSLAMKF---KNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNV 364
C G + A++ +M N + PN +T+N++I GFCK G+L A RI +M + V
Sbjct: 263 ACKTGDMRFALQLLGKMGMMSGNFVSPNAVTYNSVINGFCKAGRLDLAERIRGDMVKSGV 322
Query: 365 SPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAY 424
N TY L++ YG+ G+S+ L +EM G+ V+ + YN+++ L EG + A
Sbjct: 323 DCNERTYGALVDAYGRAGSSDEALRLCDEMTSKGLVVNTVIYNSIVYWLFMEGDIEGAMS 382
Query: 425 LVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFC 484
+++D++ ++ + T + ++ G C + A + + + + LM F
Sbjct: 383 VLRDMNSKNMQIDRFTQAIVVRGLCRNGYVKEAVEFQRQISEKKLVEDIVCHNTLMHHFV 442
Query: 485 QNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKM 534
+++ A ++L ML + ++ D+I L G GK E A++++ M
Sbjct: 443 RDKKLACADQILGSMLVQGLSLDAISFGTLIDGYLKEGKLERALEIYDGM 492
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 208 bits (529), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 143/471 (30%), Positives = 228/471 (48%), Gaps = 21/471 (4%)
Query: 80 DFVNIAYSHLIHSD-W-----KKLTALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWVQTH 133
DF ++H+D W +KL L+ L P V VL+++++D L+ +FF W T
Sbjct: 78 DFDRDWIRKVVHNDLWDDPGLEKLFDLT--LAPIWVPRVLVELKEDPKLAFKFFKWSMTR 135
Query: 134 KPSSLTLETHSIVLHILTKNRKFKSSESILRGIL----DSDSFDLPSKLFDSILYSYR-M 188
++E++ IV HIL R + + S+L+ ++ D D FD +L+S R +
Sbjct: 136 NGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVFD--------VLWSTRNV 187
Query: 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIAL 248
C VFD LF A F +M+ + P SCN L + D
Sbjct: 188 CVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVK 247
Query: 249 GFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGH 308
F+K+M P V+T N+++ CK G +E A +F+ M+ G +P TYN++I G
Sbjct: 248 RFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGF 307
Query: 309 CNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNV 368
G L + F M+ +P+VIT+N LI FCK GKL + EMK + PNV
Sbjct: 308 GKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNV 367
Query: 369 VTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKD 428
V+Y+TL++ + + G + Y +M R G+ + TY +LI CK G A L +
Sbjct: 368 VSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNE 427
Query: 429 LDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNED 488
+ + + N TY+ALI G C + + A +L+ M +G PN + L+ F + ++
Sbjct: 428 MLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKN 487
Query: 489 FDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGL 539
DRA E+L E+ + + PD ++ GL K E A + +M+ G+
Sbjct: 488 MDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGI 538
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 565 | ||||||
| 225447562 | 616 | PREDICTED: pentatricopeptide repeat-cont | 0.925 | 0.849 | 0.671 | 0.0 | |
| 224129154 | 478 | predicted protein [Populus trichocarpa] | 0.842 | 0.995 | 0.713 | 0.0 | |
| 255578729 | 517 | pentatricopeptide repeat-containing prot | 0.860 | 0.940 | 0.695 | 0.0 | |
| 449444614 | 536 | PREDICTED: pentatricopeptide repeat-cont | 0.881 | 0.929 | 0.632 | 0.0 | |
| 357509511 | 521 | Pentatricopeptide repeat-containing prot | 0.872 | 0.946 | 0.633 | 0.0 | |
| 147772266 | 483 | hypothetical protein VITISV_018089 [Viti | 0.842 | 0.985 | 0.613 | 0.0 | |
| 297803426 | 538 | pentatricopeptide repeat-containing prot | 0.913 | 0.959 | 0.603 | 0.0 | |
| 15236834 | 521 | pentatricopeptide repeat-containing prot | 0.851 | 0.923 | 0.638 | 0.0 | |
| 356526063 | 522 | PREDICTED: pentatricopeptide repeat-cont | 0.906 | 0.980 | 0.586 | 0.0 | |
| 356522220 | 437 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.757 | 0.979 | 0.538 | 1e-135 |
| >gi|225447562|ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/533 (67%), Positives = 440/533 (82%), Gaps = 10/533 (1%)
Query: 30 PFRRLSTMVTTLDKNPTFVNPSVSENSMKMNRNPIPIPHRTLPEPKGQDLDFVNIAYSHL 89
PFR ST++ K P ++ + NPIP+PHRT+PEP+GQDLDFVN+A+SHL
Sbjct: 91 PFRGFSTLLNGAAKTPNYMR----------SWNPIPVPHRTIPEPRGQDLDFVNVAHSHL 140
Query: 90 IHSDWKKLTALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHI 149
I+SDW KL ++ST LTP+R+KH++LK++KD+VLS EFF WV+ P+ TLET+SI+LHI
Sbjct: 141 INSDWAKLNSMSTGLTPYRMKHIMLKIKKDHVLSFEFFNWVKAQNPNCQTLETYSIILHI 200
Query: 150 LTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKF 209
LTKN KFKS+ES+L+GIL S S D PSKLF++ILYSYR+CDSSP VFD LFKTYA KK
Sbjct: 201 LTKNHKFKSAESVLKGILGSGSIDHPSKLFEAILYSYRICDSSPCVFDSLFKTYAQMKKL 260
Query: 210 RNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMV 269
RNA D FCQM+DYGFLP +ESCN ++S+ + +R DIAL FY+EM+R RISPNVYTLNMV
Sbjct: 261 RNAIDVFCQMKDYGFLPRVESCNAYISASISLQRGDIALTFYREMQRYRISPNVYTLNMV 320
Query: 270 MHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGI 329
M AFCK G +E+A+EVFK ME+MGF P++T+YNTLI+G+CNKGLL+ MK K LMEKNG+
Sbjct: 321 MCAFCKWGKLEKAIEVFKRMETMGFSPTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGV 380
Query: 330 QPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGAS 389
+P+ +TFNTLI GFC+ GKLHEAN+IFSEMKA +V PN +TYNTLINGY QVGNSEMG
Sbjct: 381 RPDDVTFNTLINGFCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGR 440
Query: 390 LYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQC 449
L++EMLRNGIK DILTYNALILGLC EG+TKKAAYLVK+LD+ +LVPN+ST+SALITGQC
Sbjct: 441 LHDEMLRNGIKADILTYNALILGLCMEGRTKKAAYLVKELDRENLVPNSSTFSALITGQC 500
Query: 450 VRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSI 509
VRKNSERAFQLYKSMIRSGC PN H F+ML+STFC+NEDFD A EV+ EM E+ +APDS
Sbjct: 501 VRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGAVEVVREMSERSIAPDSD 560
Query: 510 ILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAPENGEKESG 562
LSEL GL GK+ELA+KL ++ME++ L+P+GFDK +TIN E+ EKE+G
Sbjct: 561 TLSELCRGLWLSGKEELALKLCKEMEMKHLMPEGFDKSKTINFRAESEEKENG 613
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa] gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/478 (71%), Positives = 398/478 (83%)
Query: 65 PIPHRTLPEPKGQDLDFVNIAYSHLIHSDWKKLTALSTHLTPFRVKHVLLKVQKDYVLSL 124
PIPHRT+PEPKGQDLDFVN+ +SHLIHSDW KL LSTH TPFRV H+LLK+QKD+VLSL
Sbjct: 1 PIPHRTIPEPKGQDLDFVNVVHSHLIHSDWDKLNKLSTHFTPFRVNHILLKIQKDHVLSL 60
Query: 125 EFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILY 184
EFF ++T P SLTLETHSI+LHILTK KFKS++SILR +L S S DLP KLFD++L+
Sbjct: 61 EFFNSLKTLNPISLTLETHSIILHILTKKSKFKSAQSILRTLLASRSIDLPGKLFDTLLF 120
Query: 185 SYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERV 244
SYRMCDSSP VFD LFKTYAH KFRNATD F +M+DYGFLP +ESCN +LSSLLD RV
Sbjct: 121 SYRMCDSSPRVFDSLFKTYAHMNKFRNATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRV 180
Query: 245 DIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTL 304
DIAL FY+EMRR RISPN YT N+V+ A CK G +E+AVEV + MES+G P+V +YNTL
Sbjct: 181 DIALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTL 240
Query: 305 ISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNV 364
I+GHCNKGLLS+A K KNLM KNG++PNV+TFN+LI GFCK+GKLHEANR FSEMK NV
Sbjct: 241 IAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNV 300
Query: 365 SPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAY 424
+PN VTYNTLINGYGQVGNS M +YEEM+RNG+K DILTYNALILGLCKEGKTKKAA+
Sbjct: 301 TPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAF 360
Query: 425 LVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFC 484
LVK+LDK +LVPNASTYSALI+GQC RKNS+RAFQLYKSM+RSGC PN+ F+ML S F
Sbjct: 361 LVKELDKENLVPNASTYSALISGQCARKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSAFV 420
Query: 485 QNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPK 542
+NEDF+ A VL++M + MA DS L E+Y GL CGK+ LAMKL +ME R L+P+
Sbjct: 421 KNEDFEGAFNVLMDMFARSMASDSNTLLEIYDGLCQCGKENLAMKLCHEMEARRLIPE 478
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255578729|ref|XP_002530223.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223530270|gb|EEF32170.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/490 (69%), Positives = 405/490 (82%)
Query: 72 PEPKGQDLDFVNIAYSHLIHSDWKKLTALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWVQ 131
P KGQDLDFVN+A+SHLIHSDWKKLT+LSTHLTPFRVKH+LLK+QKD+VLSLEFF WVQ
Sbjct: 25 PXTKGQDLDFVNVAHSHLIHSDWKKLTSLSTHLTPFRVKHILLKIQKDHVLSLEFFNWVQ 84
Query: 132 THKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDS 191
T PSS TLETHS++LHILTKNRKFKS+E IL+ +L DLP KLF++ILYSYRMCDS
Sbjct: 85 TENPSSHTLETHSMILHILTKNRKFKSAELILKSVLVKGFIDLPDKLFEAILYSYRMCDS 144
Query: 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFY 251
SP VFD LFKT AH KKFRNATDTF QM+ YGFLP +ESCN +LSSLLD RVDIAL FY
Sbjct: 145 SPRVFDSLFKTLAHMKKFRNATDTFLQMKGYGFLPTVESCNAYLSSLLDLHRVDIALAFY 204
Query: 252 KEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNK 311
KEMRR RISPNVYT NMVM AFCK G +E+AV+VF+ MES+G P+ T+YNTLI G+C K
Sbjct: 205 KEMRRCRISPNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIMGYCRK 264
Query: 312 GLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTY 371
GLL+ A+K KN M G++ NV+TFN+LI GFCK+GKLHEA+++FSEMK NV+PN +TY
Sbjct: 265 GLLNSAVKLKNSMRAKGVEANVVTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAPNTITY 324
Query: 372 NTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDK 431
NTLING+ Q+GNSEMG LYEEM RNG+K DILTYNALILGLCKEGKTKKAAY+VK+LDK
Sbjct: 325 NTLINGHSQMGNSEMGRRLYEEMSRNGVKADILTYNALILGLCKEGKTKKAAYMVKELDK 384
Query: 432 NSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDR 491
+LVPNAST+SALI+GQC+R NS+RAFQLYKSM+R GC PN+ F ML+S FC+NEDF+
Sbjct: 385 ENLVPNASTFSALISGQCIRNNSDRAFQLYKSMVRIGCHPNEQTFNMLVSAFCKNEDFEG 444
Query: 492 AAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTIN 551
A VL+EM E+C P S +LSE+Y GL CGK+ LAMKL +++ R ++ KGF+K + IN
Sbjct: 445 AFLVLMEMFERCFTPGSDVLSEIYHGLCCCGKEHLAMKLSSELKARHMMTKGFEKAKPIN 504
Query: 552 CAPENGEKES 561
E +K S
Sbjct: 505 AGAERDDKTS 514
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444614|ref|XP_004140069.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial-like [Cucumis sativus] gi|449528063|ref|XP_004171026.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/533 (63%), Positives = 417/533 (78%)
Query: 26 INIFPFRRLSTMVTTLDKNPTFVNPSVSENSMKMNRNPIPIPHRTLPEPKGQDLDFVNIA 85
+ PFRR ST++ ++ + ++P + K NR+ IPIPHR++PEP+G DLDFVN+
Sbjct: 1 MRFLPFRRFSTLLGSVPRTYASISPKFDLSLGKRNRDSIPIPHRSIPEPRGPDLDFVNVV 60
Query: 86 YSHLIHSDWKKLTALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSI 145
+SHLIHSDW KL LS LT FRVKH+LLK QKDYVLSLEFF WV T PSS TLETH I
Sbjct: 61 HSHLIHSDWSKLDCLSMGLTAFRVKHILLKTQKDYVLSLEFFNWVATQNPSSHTLETHCI 120
Query: 146 VLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAH 205
+LHILTK RKFKS+ESILR I++S S D PSKLF+S+LYSYR+CDSSP VFDLLFKT+AH
Sbjct: 121 ILHILTKRRKFKSAESILRSIIESCSIDFPSKLFESLLYSYRLCDSSPHVFDLLFKTFAH 180
Query: 206 RKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYT 265
KKFRNA+DTFC+M+DYGFLP +ESCN +LSSLL+ R DIAL FY+EMRR+RI PN YT
Sbjct: 181 LKKFRNASDTFCRMKDYGFLPTVESCNAYLSSLLNFSRGDIALAFYREMRRSRIYPNSYT 240
Query: 266 LNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLME 325
LN+V+ A CKLG +++A VF+ M +MGF P+V +YNTLI+G+CNKGLLS AMK +++ME
Sbjct: 241 LNLVICACCKLGRLDKANVVFEEMGTMGFSPNVASYNTLIAGYCNKGLLSSAMKLRSVME 300
Query: 326 KNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSE 385
KNG+ P+V+TFNTL+ GFCK GKL EA+++F EMK ++SP VTYN LINGY + GN E
Sbjct: 301 KNGVPPDVVTFNTLVNGFCKVGKLQEASKLFGEMKGMSLSPTTVTYNILINGYSKAGNCE 360
Query: 386 MGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALI 445
MG L+EEM R +K DILTYNALILGLCKEGKTKKAAYLV++LD+ LVPNAST+SALI
Sbjct: 361 MGNRLFEEMSRFQVKADILTYNALILGLCKEGKTKKAAYLVRELDEKGLVPNASTFSALI 420
Query: 446 TGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMA 505
GQCV+K SERAFQ+YKSMI+S P F ML+STFC+NED+D A ++L EML + A
Sbjct: 421 YGQCVQKQSERAFQIYKSMIKSSFTPCDQTFRMLLSTFCENEDYDGAVQLLEEMLNRHKA 480
Query: 506 PDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAPENGE 558
PD L EL +GL CGK + AM L ++E + LLP+GFDKL+ P+N +
Sbjct: 481 PDVNNLYELCAGLGQCGKVKTAMMLCSELEAQRLLPEGFDKLKAFGLLPDNKD 533
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357509511|ref|XP_003625044.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355500059|gb|AES81262.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/499 (63%), Positives = 400/499 (80%), Gaps = 6/499 (1%)
Query: 64 IPIPHRTLPEPKGQDLDFVNIAYSHLIHSDWKKLTALSTHLTPFRVKHVLLKVQKDYVLS 123
+PIPHRTLP+PKGQDLDF+NI +SH IHS W+KLT S LTPF+++H+LLK+Q D VLS
Sbjct: 26 LPIPHRTLPQPKGQDLDFINIFHSHFIHSQWEKLTPFSKTLTPFKIQHILLKLQNDAVLS 85
Query: 124 LEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSIL 183
L+FF WVQTH P+S TL THS +LHILTKNR FK+++SI I+ ++S LF+S+L
Sbjct: 86 LKFFNWVQTHNPNSHTLHTHSFLLHILTKNRNFKTAQSIFSKIITTNS-----NLFESLL 140
Query: 184 YSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSER 243
+SY +C+SSPLVFD LFKT+AH K RNATDTF +M++YGF P +ESCN FLSS+L +R
Sbjct: 141 HSYTLCNSSPLVFDTLFKTFAHMNKLRNATDTFVKMKEYGFFPTVESCNAFLSSMLYLKR 200
Query: 244 VDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNT 303
++ + FY++MRRNRISPNVYT+NMV+ A+CKLG + +A EV + M+ MG P+V T+N+
Sbjct: 201 PELVVSFYRQMRRNRISPNVYTINMVVSAYCKLGELNKASEVLEKMKDMGLCPNVVTFNS 260
Query: 304 LISGHCNKGLLSLAMKFKNLM-EKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKAT 362
LISG+C+KGLL LA+K ++LM KNG+ PNV+TFNTLI GFCK+GKLHEANR+FSEMK
Sbjct: 261 LISGYCDKGLLGLALKVRDLMMGKNGVFPNVVTFNTLINGFCKEGKLHEANRVFSEMKLA 320
Query: 363 NVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKA 422
NV+PNVVTYNTLING+GQ GNSEMG L+EEM RN +K DILTYN LILGLCKEGKTKKA
Sbjct: 321 NVAPNVVTYNTLINGFGQAGNSEMGIGLFEEMERNKVKADILTYNGLILGLCKEGKTKKA 380
Query: 423 AYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMST 482
AY+VK+LDK +LVPNAST+SALI GQCVR NSERAF +Y+SM+RSG PN++ F ML S
Sbjct: 381 AYMVKELDKGNLVPNASTFSALIAGQCVRNNSERAFLVYRSMVRSGFSPNENTFRMLASA 440
Query: 483 FCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPK 542
FC+NEDFD A +VL +MLE+ M PDS ILSE+YSGL CG+ + A+ L ++E + LLP+
Sbjct: 441 FCKNEDFDGAVQVLRDMLERFMTPDSSILSEVYSGLCRCGRKQFALMLCSEIEAKRLLPQ 500
Query: 543 GFDKLRTINCAPENGEKES 561
GFD+ + + E+ S
Sbjct: 501 GFDREKIVITGSEHDTSNS 519
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147772266|emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/533 (61%), Positives = 402/533 (75%), Gaps = 57/533 (10%)
Query: 30 PFRRLSTMVTTLDKNPTFVNPSVSENSMKMNRNPIPIPHRTLPEPKGQDLDFVNIAYSHL 89
PFR ST++ K P ++ + NPIP+PHRT+PEP+GQDLDFVN+A+SHL
Sbjct: 5 PFRGFSTLLNGAAKTPNYMR----------SWNPIPVPHRTIPEPRGQDLDFVNVAHSHL 54
Query: 90 IHSDWKKLTALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHI 149
I+SDW KL ++ST LTP+R+KH++LK++KD+
Sbjct: 55 INSDWAKLNSMSTGLTPYRMKHIMLKIKKDH----------------------------- 85
Query: 150 LTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKF 209
D S DLPSKLF++ILYSYR+CDSSP VFD LFKTYA KK
Sbjct: 86 ------------------DRVSIDLPSKLFEAILYSYRICDSSPCVFDSLFKTYAQMKKL 127
Query: 210 RNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMV 269
RNA D FCQM+DYGFLP +ESCN ++S+ + +R DIAL FY+EM+R RISPNVYTLNMV
Sbjct: 128 RNAIDVFCQMKDYGFLPRVESCNAYISASISLQRGDIALTFYREMQRYRISPNVYTLNMV 187
Query: 270 MHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGI 329
M AFCK G +E+A+EVFK ME+MGF P++T+YNTLI+G+CNKGLL+ MK K LMEKNG+
Sbjct: 188 MCAFCKWGKLEKAIEVFKKMETMGFSPTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGV 247
Query: 330 QPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGAS 389
+P+ +TFNTLI GFC+ GKLHEAN+IFSEMKA +V PN +TYNTLINGY QVGNSEMG
Sbjct: 248 RPDDVTFNTLINGFCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGR 307
Query: 390 LYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQC 449
L++EMLRNGIK DILTYNALILGLC EG+TKKAAYLVK+LD+ +LVPN+ST+SALITGQC
Sbjct: 308 LHDEMLRNGIKADILTYNALILGLCMEGRTKKAAYLVKELDRENLVPNSSTFSALITGQC 367
Query: 450 VRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSI 509
VRKNSERAFQLYKSMIRSGC PN H F+ML+STFC+NEDFD A EV+ EM E+ +APDS
Sbjct: 368 VRKNSERAFQLYKSMIRSGCHPNYHTFKMLISTFCKNEDFDGAVEVVREMSERSIAPDSD 427
Query: 510 ILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAPENGEKESG 562
LSEL GL GK+ELA+KL ++ME++ L+P+GFDK +TIN E+ EKE+G
Sbjct: 428 TLSELCRGLWLSGKEELALKLCKEMEMKHLMPEGFDKXKTINXRAESEEKENG 480
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297803426|ref|XP_002869597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297315433|gb|EFH45856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/524 (60%), Positives = 400/524 (76%), Gaps = 8/524 (1%)
Query: 32 RRLSTMVTTLDKNPTFVNPSVSENSMKMNRNPIPIPHRTLPEPKGQDLDFVNIAYSHLIH 91
RRL ++ NP +S+N N IPIPHR+ PEPKGQDLDFVN+A+SHLI
Sbjct: 10 RRLCYQYSSFAGYGRSENPRLSKNPPAAN---IPIPHRSNPEPKGQDLDFVNVAHSHLIQ 66
Query: 92 SDWKKLTALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILT 151
SDW KL LS HL FRVK+VLLK+QKDY+LS EFF W +T P+S +LETH+IVLH LT
Sbjct: 67 SDWDKLNKLSDHLDSFRVKNVLLKIQKDYLLSFEFFNWAKTRNPASHSLETHAIVLHTLT 126
Query: 152 KNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRN 211
KNRKFKS+ESILR +L + DLP+K+FD++LYSYR CDS+P VFD LFKT+AH KKFRN
Sbjct: 127 KNRKFKSAESILRDVLVNGGVDLPAKVFDALLYSYRECDSTPRVFDSLFKTFAHLKKFRN 186
Query: 212 ATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMH 271
ATDTF QM+DYGFLP +ESCN ++SSLL RVDIAL FY+EMRR +ISPN YTLNMVM
Sbjct: 187 ATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRVDIALRFYREMRRCKISPNTYTLNMVMS 246
Query: 272 AFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQP 331
+C+ G +++ +E+ ++ME +GF + +YNTLI+GHC KGLLS A+K KN+M KNG+QP
Sbjct: 247 GYCRSGKLDKGIELLQDMERLGFRATHVSYNTLIAGHCEKGLLSSALKLKNMMGKNGLQP 306
Query: 332 NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLY 391
NV+TFNTLI GFC+ KL EA+++F EMKA N+ PN VTYNTLINGY Q G+ EM Y
Sbjct: 307 NVVTFNTLIHGFCRAVKLQEASKVFGEMKALNLPPNTVTYNTLINGYSQQGDHEMAFRFY 366
Query: 392 EEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVR 451
E+M+ NGI+ DILTYN LILGLCK+ KT+KAA VK+LDK +LVPN+ST+SALI GQCVR
Sbjct: 367 EDMVCNGIQRDILTYNTLILGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVR 426
Query: 452 KNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIIL 511
+N++R F+LYKSMIRSGC PN+ F +L+S FC+NEDFD AA+VL EM+ + + DS +
Sbjct: 427 RNADRGFELYKSMIRSGCHPNEQTFNILISAFCKNEDFDGAAQVLREMVRRSIPLDSRTV 486
Query: 512 SELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAPE 555
++ +GL+H GKD+L +L ++ME + L + D NC E
Sbjct: 487 HQVCNGLNHQGKDQLVKELLQEMEGKKFLQEPLD-----NCEAE 525
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15236834|ref|NP_194398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|334186944|ref|NP_001190849.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75213515|sp|Q9SZ10.1|PP338_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g26680, mitochondrial; Flags: Precursor gi|4455191|emb|CAB36514.1| putative protein [Arabidopsis thaliana] gi|7269520|emb|CAB79523.1| putative protein [Arabidopsis thaliana] gi|332659836|gb|AEE85236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332659837|gb|AEE85237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/481 (63%), Positives = 384/481 (79%)
Query: 65 PIPHRTLPEPKGQDLDFVNIAYSHLIHSDWKKLTALSTHLTPFRVKHVLLKVQKDYVLSL 124
PIPHR PEPKGQDLDFVN+A+SHLI SDW KL LS HL FRVK+VLLK+QKDY+LSL
Sbjct: 40 PIPHRRNPEPKGQDLDFVNVAHSHLIQSDWDKLNKLSDHLDSFRVKNVLLKIQKDYLLSL 99
Query: 125 EFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILY 184
EFF W +T P S +LETH+IVLH LTKNRKFKS+ESILR +L + DLP+K+FD++LY
Sbjct: 100 EFFNWAKTRNPGSHSLETHAIVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDALLY 159
Query: 185 SYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERV 244
SYR CDS+P VFD LFKT+AH KKFRNATDTF QM+DYGFLP +ESCN ++SSLL RV
Sbjct: 160 SYRECDSTPRVFDSLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRV 219
Query: 245 DIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTL 304
DIAL FY+EMRR +ISPN YTLNMVM +C+ G +++ +E+ ++ME +GF + +YNTL
Sbjct: 220 DIALRFYREMRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTL 279
Query: 305 ISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNV 364
I+GHC KGLLS A+K KN+M K+G+QPNV+TFNTLI GFC+ KL EA+++F EMKA NV
Sbjct: 280 IAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNV 339
Query: 365 SPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAY 424
+PN VTYNTLINGY Q G+ EM YE+M+ NGI+ DILTYNALI GLCK+ KT+KAA
Sbjct: 340 APNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQ 399
Query: 425 LVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFC 484
VK+LDK +LVPN+ST+SALI GQCVRKN++R F+LYKSMIRSGC PN+ F ML+S FC
Sbjct: 400 FVKELDKENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFC 459
Query: 485 QNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGF 544
+NEDFD A++VL EM+ + + DS + ++ +GL H GKD+L KL ++ME + L + F
Sbjct: 460 RNEDFDGASQVLREMVRRSIPLDSRTVHQVCNGLKHQGKDQLVKKLLQEMEGKKFLQESF 519
Query: 545 D 545
+
Sbjct: 520 N 520
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526063|ref|XP_003531639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial-like isoform 1 [Glycine max] gi|356526065|ref|XP_003531640.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/534 (58%), Positives = 402/534 (75%), Gaps = 22/534 (4%)
Query: 27 NIFPFRRLSTMVTTLDKNPTFVNPSVSENSMKMNRNP--IPIPHRTLPEPKGQDLDFVNI 84
NI P R ST++ +K PT P +PIPHRT+PEP+GQDLDF+ +
Sbjct: 3 NIQP-HRFSTLIEPPNKTPT--------------SKPFFLPIPHRTIPEPRGQDLDFICV 47
Query: 85 AYSHLIHSDWKKLTALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHS 144
A+ H+I+S W+KL LST LTPFR+KH+LL +Q D+V SL+ TWV H PSS TL+THS
Sbjct: 48 AHRHVINSHWEKLLPLSTSLTPFRLKHLLLALQNDHVSSLKLSTWVLKHNPSSHTLDTHS 107
Query: 145 IVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSS-PLVFDLLFKTY 203
I+LH L+K+R+FK+++ L L S P LFD++L+SYR+C+SS PLVFD LFKT
Sbjct: 108 ILLHTLSKHRQFKTTQKFLTQTLSSHP---PHTLFDALLFSYRLCNSSSPLVFDSLFKTL 164
Query: 204 AHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNR-ISPN 262
AH KFR+AT + M+++GF P ++SCN FLSSLL R DIAL FY+E+RR +SPN
Sbjct: 165 AHTNKFRHATHIYTLMKEHGFSPTVQSCNAFLSSLLRLRRADIALAFYREIRRRSCVSPN 224
Query: 263 VYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKN 322
VYTLNM++ A+C LG +++ ++ + M MG P+V ++NTLISG+CNKGL LA+K K+
Sbjct: 225 VYTLNMIIRAYCMLGEVQKGFDMLEKMMDMGLSPNVVSFNTLISGYCNKGLFGLALKVKS 284
Query: 323 LMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVG 382
LM +NG+QPNV+TFNTLI GFCK+ KLHEANR+F+EMK NV P+VVTYNTL+NGYGQVG
Sbjct: 285 LMVENGVQPNVVTFNTLINGFCKERKLHEANRVFNEMKVANVDPSVVTYNTLLNGYGQVG 344
Query: 383 NSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYS 442
+SEMG +YEEM+RNG+K DILTYNALILGLCK+GKTKKAA V++LDK +LVPNAST+S
Sbjct: 345 DSEMGVRVYEEMMRNGLKADILTYNALILGLCKDGKTKKAAGFVRELDKENLVPNASTFS 404
Query: 443 ALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502
ALITGQCVR NSERAF +Y+SM+RSGC PN F+ML+S FC+NEDFD A +VL +ML +
Sbjct: 405 ALITGQCVRNNSERAFLIYRSMVRSGCSPNGQTFQMLISAFCKNEDFDGAVQVLRDMLGR 464
Query: 503 CMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAPEN 556
M+PD +SEL GL CGK++LA+ L +ME+R LLP GFDK + PEN
Sbjct: 465 LMSPDLSTMSELCDGLCRCGKNQLALALCSEMEVRRLLPDGFDKEKIAITHPEN 518
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356522220|ref|XP_003529745.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g26680, mitochondrial-like, partial [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 253/470 (53%), Positives = 322/470 (68%), Gaps = 42/470 (8%)
Query: 70 TLPEPKGQDLDFVNIAYSHLIHSDWKKLTALSTHLTPFRVKHVLLKVQKDYVLSLEFFTW 129
++ EP+GQDLD + +A+ H+ S W+KL LST LTPFR+KH+LL ++ D V SL+ W
Sbjct: 1 SVTEPRGQDLDLITVAHRHVXESHWEKLHTLSTSLTPFRLKHLLLALRNDLVSSLKLSNW 60
Query: 130 VQT--HKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYR 187
T KP KN K S LF+S L+SYR
Sbjct: 61 PNTAYSKPP---------------KNSSRKPS---------------LHTLFESSLFSYR 90
Query: 188 MC-DSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDI 246
+C SSPLVFD LF T AH KFR+AT + M+++GF P +ESCN F+SSLL R DI
Sbjct: 91 LCSSSSPLVFDALFNTLAHTNKFRHATLAYTLMKEHGFSPTVESCNAFMSSLLHLRRADI 150
Query: 247 ALGFYKEMRRNR-ISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLI 305
AL FY+EMRR +SPNVYTLNM + A+C LG +++ E+ M M P+V ++NTLI
Sbjct: 151 ALAFYREMRRRSCVSPNVYTLNMAIRAYCMLGEVQKGFEMSXKMMGMVLSPNVVSFNTLI 210
Query: 306 SGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVS 365
SG+CNKGL LA+K K+LM +NG+QPNV+TFNTLI GFCK+ K HEANR+F+EMK +V+
Sbjct: 211 SGYCNKGLFGLALKVKSLMGENGVQPNVVTFNTLINGFCKERKRHEANRVFNEMKVXHVA 270
Query: 366 PNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYL 425
PNVVTYNTL+NGYGQVG+ EM+RNG+K DILT NALILGLCK+GKTKKAA
Sbjct: 271 PNVVTYNTLLNGYGQVGD--------REMVRNGVKADILTINALILGLCKDGKTKKAAGF 322
Query: 426 VKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ 485
V++LDK +LV N ST+SALITG CVR NSER F +Y+SM+RSG PN+HIF+ML+S F +
Sbjct: 323 VRELDKENLVSNXSTFSALITGLCVRNNSERPFLIYRSMVRSGYSPNEHIFQMLISAFYK 382
Query: 486 NEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKME 535
NEDFD +VL +ML + M+PD LSEL GL CGK++LA+ L +E
Sbjct: 383 NEDFDGDVQVLRDMLGRLMSPDLSTLSELCDGLCRCGKNQLALALCSVVE 432
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 565 | ||||||
| TAIR|locus:2116372 | 521 | AT4G26680 "AT4G26680" [Arabido | 0.851 | 0.923 | 0.638 | 1e-169 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.785 | 0.594 | 0.321 | 4.7e-64 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.792 | 0.614 | 0.307 | 2e-56 | |
| TAIR|locus:2024301 | 606 | AT1G09820 "AT1G09820" [Arabido | 0.787 | 0.734 | 0.308 | 3.3e-56 | |
| TAIR|locus:2053552 | 627 | AT2G15630 "AT2G15630" [Arabido | 0.792 | 0.714 | 0.290 | 7.8e-55 | |
| TAIR|locus:2166610 | 596 | AT5G38730 "AT5G38730" [Arabido | 0.738 | 0.699 | 0.299 | 7e-54 | |
| TAIR|locus:2024367 | 607 | AT1G09680 "AT1G09680" [Arabido | 0.785 | 0.731 | 0.279 | 2.6e-51 | |
| TAIR|locus:2027382 | 657 | AT1G11710 "AT1G11710" [Arabido | 0.814 | 0.700 | 0.282 | 2.8e-50 | |
| TAIR|locus:2177028 | 816 | AT5G12100 [Arabidopsis thalian | 0.649 | 0.449 | 0.301 | 9.7e-48 | |
| TAIR|locus:2139732 | 566 | AT4G11690 [Arabidopsis thalian | 0.665 | 0.664 | 0.314 | 2e-47 |
| TAIR|locus:2116372 AT4G26680 "AT4G26680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1650 (585.9 bits), Expect = 1.0e-169, P = 1.0e-169
Identities = 307/481 (63%), Positives = 384/481 (79%)
Query: 65 PIPHRTLPEPKGQDLDFVNIAYSHLIHSDWKKLTALSTHLTPFRVKHVLLKVQKDYVLSL 124
PIPHR PEPKGQDLDFVN+A+SHLI SDW KL LS HL FRVK+VLLK+QKDY+LSL
Sbjct: 40 PIPHRRNPEPKGQDLDFVNVAHSHLIQSDWDKLNKLSDHLDSFRVKNVLLKIQKDYLLSL 99
Query: 125 EFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILY 184
EFF W +T P S +LETH+IVLH LTKNRKFKS+ESILR +L + DLP+K+FD++LY
Sbjct: 100 EFFNWAKTRNPGSHSLETHAIVLHTLTKNRKFKSAESILRDVLVNGGVDLPAKVFDALLY 159
Query: 185 SYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERV 244
SYR CDS+P VFD LFKT+AH KKFRNATDTF QM+DYGFLP +ESCN ++SSLL RV
Sbjct: 160 SYRECDSTPRVFDSLFKTFAHLKKFRNATDTFMQMKDYGFLPTVESCNAYMSSLLGQGRV 219
Query: 245 DIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTL 304
DIAL FY+EMRR +ISPN YTLNMVM +C+ G +++ +E+ ++ME +GF + +YNTL
Sbjct: 220 DIALRFYREMRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTL 279
Query: 305 ISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNV 364
I+GHC KGLLS A+K KN+M K+G+QPNV+TFNTLI GFC+ KL EA+++F EMKA NV
Sbjct: 280 IAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNV 339
Query: 365 SPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAY 424
+PN VTYNTLINGY Q G+ EM YE+M+ NGI+ DILTYNALI GLCK+ KT+KAA
Sbjct: 340 APNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQ 399
Query: 425 LVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFC 484
VK+LDK +LVPN+ST+SALI GQCVRKN++R F+LYKSMIRSGC PN+ F ML+S FC
Sbjct: 400 FVKELDKENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFC 459
Query: 485 QNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGF 544
+NEDFD A++VL EM+ + + DS + ++ +GL H GKD+L KL ++ME + L + F
Sbjct: 460 RNEDFDGASQVLREMVRRSIPLDSRTVHQVCNGLKHQGKDQLVKKLLQEMEGKKFLQESF 519
Query: 545 D 545
+
Sbjct: 520 N 520
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 144/448 (32%), Positives = 240/448 (53%)
Query: 96 KLTALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRK 155
+L LS + TP ++LLK Q D L L+F W H+ TL I LHILTK +
Sbjct: 38 QLHHLSANFTPEAASNLLLKSQNDQALILKFLNWANPHQ--FFTLRCKCITLHILTKFKL 95
Query: 156 FKSSESILRGILDSDSFD-LPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATD 214
+K+++ + + D S +F S+ +Y +C S+ VFDL+ K+Y+ A
Sbjct: 96 YKTAQILAEDVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALS 155
Query: 215 TFCQMRDYGFLPIIESCNKFLSSLLDSER-VDIALGFYKEMRRNRISPNVYTLNMVMHAF 273
+ +GF+P + S N L + + S+R + A +KEM +++SPNV+T N+++ F
Sbjct: 156 IVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGF 215
Query: 274 CKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNV 333
C G I+ A+ +F ME+ G +P+V TYNTLI G+C + K M G++PN+
Sbjct: 216 CFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNL 275
Query: 334 ITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEE 393
I++N +I G C++G++ E + + +EM S + VTYNTLI GY + GN ++ E
Sbjct: 276 ISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAE 335
Query: 394 MLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKN 453
MLR+G+ ++TY +LI +CK G +A + + L PN TY+ L+ G +
Sbjct: 336 MLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGY 395
Query: 454 SERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSE 513
A+++ + M +G P+ + L++ C + A VL +M EK ++PD + S
Sbjct: 396 MNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYST 455
Query: 514 LYSGLHHCGKDELAMKLFRKMEIRGLLP 541
+ SG + A+++ R+M +G+ P
Sbjct: 456 VLSGFCRSYDVDEALRVKREMVEKGIKP 483
|
|
| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 143/465 (30%), Positives = 238/465 (51%)
Query: 104 LTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPS-SLTLETHSIVLHILTKNRKFKSSES- 161
L P V VL + + D L F + H P+ T + S ++HIL ++ + ++S
Sbjct: 76 LNPLAVVEVLYRCRNDLTLGQRFVDQLGFHFPNFKHTSLSLSAMIHILVRSGRLSDAQSC 135
Query: 162 ILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRD 221
+LR I S L ++ +S+ ++ C S+ VFDLL +TY +K R A + F +R
Sbjct: 136 LLRMIRRSGVSRL--EIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRS 193
Query: 222 YGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIER 281
GF I++CN + SL+ V++A G Y+E+ R+ + NVYTLN++++A CK G +E+
Sbjct: 194 KGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEK 253
Query: 282 AVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIF 341
++ G P + TYNTLIS + +KGL+ A + N M G P V T+NT+I
Sbjct: 254 VGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVIN 313
Query: 342 GFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKV 401
G CK GK A +F+EM + +SP+ TY +L+ + G+ ++ +M +
Sbjct: 314 GLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVP 373
Query: 402 DILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLY 461
D++ +++++ + G KA + + L+P+ Y+ LI G C + A L
Sbjct: 374 DLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLR 433
Query: 462 KSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHC 521
M++ GC + + ++ C+ + A ++ EM E+ + PDS L+ L G HC
Sbjct: 434 NEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDG--HC 491
Query: 522 --GKDELAMKLFRKME---IR------GLLPKGFDKLRTINCAPE 555
G + AM+LF+KM+ IR L GF K+ I+ A E
Sbjct: 492 KLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKE 536
|
|
| TAIR|locus:2024301 AT1G09820 "AT1G09820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 140/454 (30%), Positives = 227/454 (50%)
Query: 94 WKKLTALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKN 153
W KL T + P + L+ + D L L +++W+ + S++LE +LH L
Sbjct: 55 WSKLGVHVTDINPNELFRQLISSELDPDLCLRYYSWLVKNSDISVSLELTFKLLHSLANA 114
Query: 154 RKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNAT 213
+++ S L G + + S +F +I +C +S ++ D+L YA+ +F
Sbjct: 115 KRYSKIRSFLDGFVRNGSDHQVHSIFHAISMCDNVCVNS-IIADMLVLAYANNSRFELGF 173
Query: 214 DTFCQMRDYGFLPIIESCNKFLSSLLDSER-VDIALGFYKEMRRNRISPNVYTLNMVMHA 272
+ F + YG+ SC + +LL R D+ YKEM R +I PNV+T N+V++A
Sbjct: 174 EAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEY-VYKEMIRRKIQPNVFTFNVVINA 232
Query: 273 FCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKG----LLSLAMKFKNLMEKNG 328
CK G + +A +V ++M+ G P+V +YNTLI G+C G + K ++E N
Sbjct: 233 LCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVE-ND 291
Query: 329 IQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGA 388
+ PN+ TFN LI GF K L + ++F EM +V PNV++YN+LING G
Sbjct: 292 VSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAI 351
Query: 389 SLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQ 448
S+ ++M+ G++ +++TYNALI G CK K+A + + VP Y+ LI
Sbjct: 352 SMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAY 411
Query: 449 CVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDS 508
C + F L + M R G P+ + L++ C+N + + AA+ L + L PD
Sbjct: 412 CKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIE-AAKKLFDQLTSKGLPDL 470
Query: 509 IILSELYSGLHHCGKDELAMKLFRKMEIRGLLPK 542
+ L G G+ A L ++M GL P+
Sbjct: 471 VTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPR 504
|
|
| TAIR|locus:2053552 AT2G15630 "AT2G15630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 135/464 (29%), Positives = 240/464 (51%)
Query: 92 SDWKKLTALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILT 151
S W + ++ LTP V LL + K L+ F + ++ L +T + + +++
Sbjct: 57 SQWHIVEHVADKLTPSLVSTTLLSLVKTPNLAFNFVNHIDLYR---LDFQTQCLAIAVIS 113
Query: 152 KNRKFKSSESILRGILDSDSFDLPSKLFDSILYSY-RMCDSSPLVFDLLFKTYAHRKKFR 210
K K +L+ ++ S + + LFD ++ ++ R+ S ++FDLL + +
Sbjct: 114 KLSSPKPVTQLLKEVVTSRKNSIRN-LFDELVLAHDRLETKSTILFDLLVRCCCQLRMVD 172
Query: 211 NATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVM 270
A + F M++ GF P E+CN L+ L R++ A FY +M R I NVYT N+++
Sbjct: 173 EAIECFYLMKEKGFYPKTETCNHILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMI 232
Query: 271 HAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQ 330
+ CK G +++A ME G P++ TYNTL+ G +G + A + M+ G Q
Sbjct: 233 NVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQ 292
Query: 331 PNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASL 390
P++ T+N ++ C +G+ A+ + EMK + P+ V+YN LI G G+ EM +
Sbjct: 293 PDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAY 349
Query: 391 YEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCV 450
+EM++ G+ TYN LI GL E K + A L++++ + +V ++ TY+ LI G C
Sbjct: 350 RDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQ 409
Query: 451 RKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSII 510
++++AF L+ M+ G +P + + L+ C+ A E+ +++ K M PD ++
Sbjct: 410 HGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVM 469
Query: 511 LSELYSGLHHC--GKDELAMKLFRKMEIRGLLPKGFDKLRTINC 552
++ L G HC G + A L ++M++ + P D + T NC
Sbjct: 470 MNTLMDG--HCAIGNMDRAFSLLKEMDMMSINP---DDV-TYNC 507
|
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| TAIR|locus:2166610 AT5G38730 "AT5G38730" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 125/418 (29%), Positives = 221/418 (52%)
Query: 122 LSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDS 181
LS FF W + S +L++ ++ ILTK++ FK++ +L + + P L
Sbjct: 62 LSWSFFIWTDSLPSSKHSLQSSWKMILILTKHKHFKTAHQLLDKLAQRELLSSPLVLRSL 121
Query: 182 ILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDS 241
+ + VF L YA ++ F Q+R G P +++C L+SL+
Sbjct: 122 VGGVSEDPEDVSHVFSWLMIYYAKAGMINDSIVVFEQIRSCGLKPHLQACTVLLNSLVKQ 181
Query: 242 ERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTY 301
D +K+M + + N++ N+++HA K G E+A ++ ME G P + TY
Sbjct: 182 RLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEKGVFPDIFTY 241
Query: 302 NTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKA 361
NTLIS +C K + A+ ++ ME++G+ PN++T+N+ I GF ++G++ EA R+F E+K
Sbjct: 242 NTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRMREATRLFREIK- 300
Query: 362 TNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKK 421
+V+ N VTY TLI+GY ++ + + L E M G ++TYN+++ LC++G+ ++
Sbjct: 301 DDVTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIRE 360
Query: 422 AAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMS 481
A L+ ++ + P+ T + LI C ++ A ++ K MI SG + + + ++ L+
Sbjct: 361 ANRLLTEMSGKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIH 420
Query: 482 TFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGL 539
FC+ + + A E L M+EK +P S L G ++ K + KL + E RGL
Sbjct: 421 GFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITKLLEEFEKRGL 478
|
|
| TAIR|locus:2024367 AT1G09680 "AT1G09680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 509 (184.2 bits), Expect = 2.6e-51, Sum P(2) = 2.6e-51
Identities = 125/447 (27%), Positives = 213/447 (47%)
Query: 95 KKLTALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNR 154
K L +LS H + H L + + + + FF ++ + T+ET+ ++ L +
Sbjct: 75 KVLPSLSVHHVVDLINHNPLSLPQRSIFA--FFKFISSQPGFRFTVETYFVLARFLAVHE 132
Query: 155 KFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATD 214
F ++S++ ++ + S +F S++ R+ + D L TY +A
Sbjct: 133 MFTEAQSLIELVVSRKGKNSASSVFISLV-EMRVTPMCGFLVDALMITYTDLGFIPDAIQ 191
Query: 215 TFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFC 274
F R + F I C L ++ GFY E+ NVY N++M+ FC
Sbjct: 192 CFRLSRKHRFDVPIRGCGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNVYVFNILMNKFC 251
Query: 275 KLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVI 334
K G I A +VF + P+V ++NTLI+G+C G L + K+ MEK+ +P+V
Sbjct: 252 KEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVF 311
Query: 335 TFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEM 394
T++ LI CK+ K+ A+ +F EM + PN V + TLI+G+ + G ++ Y++M
Sbjct: 312 TYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKM 371
Query: 395 LRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNS 454
L G++ DI+ YN L+ G CK G A +V + + L P+ TY+ LI G C +
Sbjct: 372 LSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDV 431
Query: 455 ERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSEL 514
E A ++ K M ++G ++ F L+ C+ A L EML + PD + + +
Sbjct: 432 ETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMM 491
Query: 515 YSGLHHCGKDELAMKLFRKMEIRGLLP 541
G + KL ++M+ G +P
Sbjct: 492 MDAFCKKGDAQTGFKLLKEMQSDGHVP 518
|
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| TAIR|locus:2027382 AT1G11710 "AT1G11710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 133/470 (28%), Positives = 230/470 (48%)
Query: 72 PEPKGQDLDFVNIAYSHLIHSDWKKLTALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWV- 130
PEP +D+ F + + L W L S+ LT + VL + + L+LEF+ WV
Sbjct: 26 PEP--EDILFSALCLN-LRQRRWNTLHQFSSSLTNPLISRVLREFRSSPKLALEFYNWVL 82
Query: 131 --QTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDL-PSKLFDSILYSYR 187
T S E +++H+L +R+F + SI+ ++ + L P + ++ SY+
Sbjct: 83 RSNTVAKSENRFEASCVMIHLLVGSRRFDDALSIMANLMSVEGEKLSPLHVLSGLIRSYQ 142
Query: 188 MCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIA 247
C SSP VFD L + + A + Q R GF + + N F+ LL+ +D
Sbjct: 143 ACGSSPDVFDSLVRACTQNGDAQGAYEVIEQTRAEGFCVSVHALNNFMGCLLNVNEIDRF 202
Query: 248 LGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISG 307
YKEM NV T N+V+++FCK + A+ VF M G P+V ++N +I G
Sbjct: 203 WKVYKEMDSLGYVENVNTFNLVIYSFCKESKLFEALSVFYRMLKCGVWPNVVSFNMMIDG 262
Query: 308 HCNKGLLSLAMKF---KNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNV 364
C G + A++ +M N + PN +T+N++I GFCK G+L A RI +M + V
Sbjct: 263 ACKTGDMRFALQLLGKMGMMSGNFVSPNAVTYNSVINGFCKAGRLDLAERIRGDMVKSGV 322
Query: 365 SPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAY 424
N TY L++ YG+ G+S+ L +EM G+ V+ + YN+++ L EG + A
Sbjct: 323 DCNERTYGALVDAYGRAGSSDEALRLCDEMTSKGLVVNTVIYNSIVYWLFMEGDIEGAMS 382
Query: 425 LVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFC 484
+++D++ ++ + T + ++ G C + A + + + + LM F
Sbjct: 383 VLRDMNSKNMQIDRFTQAIVVRGLCRNGYVKEAVEFQRQISEKKLVEDIVCHNTLMHHFV 442
Query: 485 QNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKM 534
+++ A ++L ML + ++ D+I L G GK E A++++ M
Sbjct: 443 RDKKLACADQILGSMLVQGLSLDAISFGTLIDGYLKEGKLERALEIYDGM 492
|
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| TAIR|locus:2177028 AT5G12100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 482 (174.7 bits), Expect = 9.7e-48, Sum P(2) = 9.7e-48
Identities = 112/372 (30%), Positives = 189/372 (50%)
Query: 190 DSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALG 249
+ S + F+ L K +A + +M+D GF+P + + +E+ + ALG
Sbjct: 281 EPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALG 340
Query: 250 FYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHC 309
Y+ + + N YT +++++A CK G IE+A E+ + G +P+ YNT+I G+C
Sbjct: 341 VYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYC 400
Query: 310 NKG-LLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNV 368
KG L+ MK + MEK G++P+ + +N LI FC+ G++ A + ++MK VSP+V
Sbjct: 401 RKGDLVGARMKIE-AMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSV 459
Query: 369 VTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKD 428
TYN LI GYG+ + + +EM NG ++++Y LI LCK K +A + +D
Sbjct: 460 ETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRD 519
Query: 429 LDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNED 488
++ + P Y+ LI G C + E AF+ K M++ G N + L+
Sbjct: 520 MEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGK 579
Query: 489 FDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLP--KGFDK 546
A ++LLE+ K + PD + L SG G + + L+ +M+ G+ P K +
Sbjct: 580 LSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHL 639
Query: 547 LRTINCAPENGE 558
L ++ C E E
Sbjct: 640 LISL-CTKEGIE 650
|
|
| TAIR|locus:2139732 AT4G11690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 120/382 (31%), Positives = 198/382 (51%)
Query: 162 ILRGILDSDSFDLPSKLFDSILYSYRMCDSSP--LVFDLLFKTYAHRKKFRNATDTFCQM 219
+++G ++ + K FD +L SP +++ L + + A D F +M
Sbjct: 169 LIKGCCEAGEIE---KSFD-LLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM 224
Query: 220 RDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGII 279
G + + ++ L + Y++M+ + + PN+YT N VM+ CK G
Sbjct: 225 GKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRT 284
Query: 280 ERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTL 339
+ A +VF M G ++ TYNTLI G C + L+ A K + M+ +GI PN+IT+NTL
Sbjct: 285 KDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTL 344
Query: 340 IFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGI 399
I GFC GKL +A + ++K+ +SP++VTYN L++G+ + G++ A + +EM GI
Sbjct: 345 IDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGI 404
Query: 400 KVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQ 459
K +TY LI + +KA L +++ LVP+ TYS LI G C++ A +
Sbjct: 405 KPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASR 464
Query: 460 LYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLH 519
L+KSM+ C PN+ I+ ++ +C+ RA ++L EM EK +AP+ + L
Sbjct: 465 LFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLC 524
Query: 520 HCGKDELAMKLFRKMEIRGLLP 541
K + A +L KM G+ P
Sbjct: 525 KERKSKEAERLVEKMIDSGIDP 546
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SZ10 | PP338_ARATH | No assigned EC number | 0.6382 | 0.8513 | 0.9232 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00029127001 | SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (563 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 565 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-24 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-24 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-24 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-19 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-13 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-24
Identities = 68/269 (25%), Positives = 123/269 (45%), Gaps = 8/269 (2%)
Query: 247 ALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNM--ESMGFIPSVTTYNTL 304
A G Y MR + P+ N ++ A + G ++RA +V M E+ P T L
Sbjct: 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585
Query: 305 ISGHCNKGLLSLAMKFKNLMEKNGIQ--PNVITFNTLIFGFC-KKGKLHEANRIFSEMKA 361
+ N G + A + ++ + I+ P V T + C +KG A I+ +MK
Sbjct: 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT---IAVNSCSQKGDWDFALSIYDDMKK 642
Query: 362 TNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKK 421
V P+ V ++ L++ G G+ + + ++ + GIK+ ++Y++L+ KK
Sbjct: 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702
Query: 422 AAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMS 481
A L +D+ L P ST +ALIT C +A ++ M R G PN + +L+
Sbjct: 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762
Query: 482 TFCQNEDFDRAAEVLLEMLEKCMAPDSII 510
+ +D D ++L + E + P+ ++
Sbjct: 763 ASERKDDADVGLDLLSQAKEDGIKPNLVM 791
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 4e-24
Identities = 73/317 (23%), Positives = 136/317 (42%), Gaps = 18/317 (5%)
Query: 233 KFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM 292
KF + V A F K +R +P + T NM+M I+ A+ V + ++
Sbjct: 411 KFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEA 466
Query: 293 GFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEA 352
G Y TLIS G + + + M G++ NV TF LI G + G++ +A
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526
Query: 353 NRIFSEMKATNVSPNVVTYNTLINGYGQVGN--------SEMGASLYEEMLRNGIKVDIL 404
+ M++ NV P+ V +N LI+ GQ G +EM A + I D +
Sbjct: 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP------IDPDHI 580
Query: 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSM 464
T AL+ G+ +A + + + + ++ Y+ + + + + A +Y M
Sbjct: 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640
Query: 465 IRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKD 524
+ G +P++ F L+ D D+A E+L + ++ + ++ S L +
Sbjct: 641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700
Query: 525 ELAMKLFRKMEIRGLLP 541
+ A++L+ ++ L P
Sbjct: 701 KKALELYEDIKSIKLRP 717
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 6e-24
Identities = 79/355 (22%), Positives = 145/355 (40%), Gaps = 16/355 (4%)
Query: 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLP-------IIESCNKFLSSLLDSERVDIAL 248
F++L A + A +++ G +I +C K S +VD
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAK-------SGKVDAMF 492
Query: 249 GFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGH 308
+ EM + NV+T ++ + G + +A + M S P +N LIS
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552
Query: 309 CNKGLLSLAMKFKNLM--EKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSP 366
G + A M E + I P+ IT L+ G++ A ++ + N+
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612
Query: 367 NVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLV 426
Y +N Q G+ + S+Y++M + G+K D + ++AL+ G KA ++
Sbjct: 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672
Query: 427 KDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQN 486
+D K + +YS+L+ KN ++A +LY+ + RP L++ C+
Sbjct: 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732
Query: 487 EDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLP 541
+A EVL EM + P++I S L ++ + L + + G+ P
Sbjct: 733 NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKP 787
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 1e-19
Identities = 65/284 (22%), Positives = 129/284 (45%), Gaps = 13/284 (4%)
Query: 266 LNMVMHA-FCKLGIIERAVEVFKNMESMGF-----IPSVTTYNTLISGHCNKGLLSLAMK 319
++ + HA F K +RAV+ E+ F P+++T+N L+S + + A++
Sbjct: 404 MDKIYHAKFFKACKKQRAVK-----EAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALR 458
Query: 320 FKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYG 379
L+++ G++ + + TLI K GK+ +F EM V NV T+ LI+G
Sbjct: 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518
Query: 380 QVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNS--LVPN 437
+ G Y M +K D + +NALI + G +A ++ ++ + + P+
Sbjct: 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578
Query: 438 ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLL 497
T AL+ +RA ++Y+ + + ++ + +++ Q D+D A +
Sbjct: 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638
Query: 498 EMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLP 541
+M +K + PD + S L H G + A ++ + +G+
Sbjct: 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 79.4 bits (197), Expect = 9e-19
Identities = 27/48 (56%), Positives = 38/48 (79%)
Query: 331 PNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGY 378
P+V+T+NTLI G+CKKGK+ EA ++F+EMK + PNV TY+ LI+G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 1e-17
Identities = 55/212 (25%), Positives = 105/212 (49%), Gaps = 8/212 (3%)
Query: 247 ALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLIS 306
AL Y EMR + +S + +T ++++ F +L ++E A + + GF + L+
Sbjct: 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368
Query: 307 GHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSP 366
+ G + A +N+ ++ + N+I++N LI G+ G+ +A +F M A V+P
Sbjct: 369 LYSKWGRMEDA---RNVFDRMPRK-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424
Query: 367 NVVTYNTLINGYGQVGNSEMGASLYEEMLRN-GIKVDILTYNALILGLCKEGKTKKAAYL 425
N VT+ +++ G SE G +++ M N IK + Y +I L +EG +A +
Sbjct: 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484
Query: 426 VKDLDKNSLVPNASTYSALITGQCVRKNSERA 457
++ + P + ++AL+T + KN E
Sbjct: 485 IR---RAPFKPTVNMWAALLTACRIHKNLELG 513
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 3e-17
Identities = 35/146 (23%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 234 FLSSLLD----SERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNM 289
F S+L+D + +D A ++ R+ I + + +M A ++A+E+++++
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710
Query: 290 ESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKL 349
+S+ P+V+T N LI+ C L A++ + M++ G+ PN IT++ L+ +K
Sbjct: 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770
Query: 350 HEANRIFSEMKATNVSPNVVTYNTLI 375
+ S+ K + PN+V +
Sbjct: 771 DVGLDLLSQAKEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 6e-17
Identities = 28/50 (56%), Positives = 35/50 (70%)
Query: 296 PSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCK 345
P V TYNTLI G+C KG + A+K N M+K GI+PNV T++ LI G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.8 bits (180), Expect = 2e-16
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 366 PNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCK 415
P+VVTYNTLI+GY + G E L+ EM + GIK ++ TY+ LI GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 2e-15
Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 12/228 (5%)
Query: 244 VDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNT 303
D AL Y +M++ + P+ + ++ G +++A E+ ++ G +Y++
Sbjct: 630 WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689
Query: 304 LISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATN 363
L+ N A++ ++ ++P V T N LI C+ +L +A + SEMK
Sbjct: 690 LMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749
Query: 364 VSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAA 423
+ PN +TY+ L+ + ++++G L + +GIK +++ + GLC K A
Sbjct: 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCLRRFEKACA 808
Query: 424 YLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRP 471
+ +S P Q K + A +Y+ I +G P
Sbjct: 809 LGEPVVSFDSGRP-----------QIENKWTSWALMVYRETISAGTLP 845
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 3e-13
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 261 PNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCN 310
P+V T N ++ +CK G +E A+++F M+ G P+V TY+ LI G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 60.8 bits (149), Expect = 2e-12
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 327 NGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMK 360
G++P+V+T+NTLI G C+ G++ EA + EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 5e-12
Identities = 66/345 (19%), Positives = 122/345 (35%), Gaps = 55/345 (15%)
Query: 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMR 255
+D L + K R + + GF P N+ L + + G + R
Sbjct: 126 YDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL-------LMHVKCGMLIDAR 178
Query: 256 R---NRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKG 312
R N+ + ++ G A +F+ M G T+ ++ G
Sbjct: 179 RLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238
Query: 313 LLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYN 372
+ + K G+ + LI + K G + +A +F M V +N
Sbjct: 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWN 294
Query: 373 TLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALI-----LGL-------------- 413
+++ GY G SE LY EM +G+ +D T++ +I L L
Sbjct: 295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354
Query: 414 ----------------CKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERA 457
K G+ + A + + + +L+ +++ALI G +A
Sbjct: 355 GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI----SWNALIAGYGNHGRGTKA 410
Query: 458 FQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDF-DRAAEVLLEMLE 501
++++ MI G PN F ++S C+ ++ E+ M E
Sbjct: 411 VEMFERMIAEGVAPNHVTFLAVLSA-CRYSGLSEQGWEIFQSMSE 454
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 1e-11
Identities = 72/337 (21%), Positives = 142/337 (42%), Gaps = 43/337 (12%)
Query: 230 SCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNM 289
S N +S ++ L + MR + P++ T+ V+ A LG E+ +
Sbjct: 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314
Query: 290 ESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKL 349
GF V+ N+LI + + G A K + ME + +++ +I G+ K G
Sbjct: 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLP 370
Query: 350 HEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNAL 409
+A ++ M+ NVSP+ +T ++++ +G+ ++G L+E R G+ ++ NAL
Sbjct: 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430
Query: 410 ILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGC 469
I K KA + ++ + ++ +++++I G + A ++ M+ +
Sbjct: 431 IEMYSKCKCIDKALEVFHNIPEKDVI----SWTSIIAGLRLNNRCFEALIFFRQMLLT-L 485
Query: 470 RPN--------------------KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKC--MAP- 506
+PN K I ++ T + F A LL++ +C M
Sbjct: 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA--LLDLYVRCGRMNYA 543
Query: 507 ---------DSIILSELYSGLHHCGKDELAMKLFRKM 534
D + + L +G GK +A++LF +M
Sbjct: 544 WNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 1e-11
Identities = 52/228 (22%), Positives = 104/228 (45%), Gaps = 8/228 (3%)
Query: 245 DIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTL 304
D AL Y M + P+VYT V+ + + R EV ++ GF V N L
Sbjct: 169 DEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228
Query: 305 ISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNV 364
I+ + G + A + M + + I++N +I G+ + G+ E +F M+ +V
Sbjct: 229 ITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSV 284
Query: 365 SPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAY 424
P+++T ++I+ +G+ +G ++ +++ G VD+ N+LI G +A
Sbjct: 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344
Query: 425 LVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPN 472
+ ++ V +++A+I+G ++A + Y M + P+
Sbjct: 345 VFSRMETKDAV----SWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 1e-10
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 402 DILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQC 449
D++TYN LI G CK+GK ++A L ++ K + PN TYS LI G C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 61/289 (21%), Positives = 106/289 (36%), Gaps = 41/289 (14%)
Query: 223 GFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERA 282
GF + CN + L A + M + + ++ + K G+ ++A
Sbjct: 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKA 373
Query: 283 VEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTL--- 339
+E + ME P T +++S G L + +K L E+ G+ V+ N L
Sbjct: 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433
Query: 340 ----------------------------IFGFCKKGKLHEANRIFSEMKATNVSPNVVTY 371
I G + EA F +M T + PN VT
Sbjct: 434 YSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTL 492
Query: 372 NTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDK 431
++ ++G G ++ +LR GI D NAL+ + G+ A
Sbjct: 493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF----- 547
Query: 432 NSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLM 480
NS + +++ L+TG A +L+ M+ SG P++ F L+
Sbjct: 548 NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 6e-09
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 436 PNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ 485
P+ TY+ LI G C + E A +L+ M + G +PN + + +L+ C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 8e-09
Identities = 64/282 (22%), Positives = 118/282 (41%), Gaps = 16/282 (5%)
Query: 263 VYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMK-FK 321
T + ++ A L I V+ ++ES GF P N ++ H G+L A + F
Sbjct: 123 ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182
Query: 322 NLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQV 381
+ E+N ++ T+I G G EA +F EM T+ ++ +
Sbjct: 183 EMPERNLA-----SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237
Query: 382 GNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTY 441
G++ G L+ +L+ G+ D ALI K G + A + + + + V +
Sbjct: 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV----AW 293
Query: 442 SALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501
++++ G + SE A LY M SG ++ F +++ F + + A + ++
Sbjct: 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353
Query: 502 KCMAPDSI---ILSELYSGLHHCGKDELAMKLFRKMEIRGLL 540
D + L +LYS G+ E A +F +M + L+
Sbjct: 354 TGFPLDIVANTALVDLYS---KWGRMEDARNVFDRMPRKNLI 392
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-08
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 230 SCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK 275
+ N + +V+ AL + EM++ I PNVYT ++++ CK
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 6e-08
Identities = 58/276 (21%), Positives = 118/276 (42%), Gaps = 44/276 (15%)
Query: 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKE 253
+V + L + Y+ K A + F + + + S ++ L + R AL F+++
Sbjct: 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVI----SWTSIIAGLRLNNRCFEALIFFRQ 480
Query: 254 MRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKN-----MESMGFIPS----------- 297
M + PN TL + A ++G + E+ + + GF+P+
Sbjct: 481 MLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539
Query: 298 --------------VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGF 343
V ++N L++G+ G S+A++ N M ++G+ P+ +TF +L+
Sbjct: 540 MNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599
Query: 344 CKKGKLHEANRIFSEMKAT-NVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVD 402
+ G + + F M+ +++PN+ Y +++ G+ G + +M I D
Sbjct: 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPD 656
Query: 403 ILTYNALILGLCKEGKT----KKAAYLVKDLDKNSL 434
+ AL L C+ + + AA + +LD NS+
Sbjct: 657 PAVWGAL-LNACRIHRHVELGELAAQHIFELDPNSV 691
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 9e-07
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 369 VTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDI 403
VTYNTLI+G + G E L++EM GI+ D+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (107), Expect = 1e-06
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 259 ISPNVYTLNMVMHAFCKLGIIERAVEVFKNME 290
+ P+V T N ++ C+ G ++ AVE+ ME
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (105), Expect = 2e-06
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 292 MGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLME 325
G P V TYNTLI G C G + A++ + ME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 334 ITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNV 368
+T+NTLI G CK G++ EA +F EMK + P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 3e-06
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 369 VTYNTLINGYGQVGNSEMGASLYEEMLRNGI 399
VTYN+LI+GY + G E L++EM G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 6e-06
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 363 NVSPNVVTYNTLINGYGQVGNSEMGASLYEEM 394
+ P+VVTYNTLI+G + G + L +EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 7e-06
Identities = 36/181 (19%), Positives = 73/181 (40%), Gaps = 10/181 (5%)
Query: 232 NKFLSSLLDSERVDIALGFYKEMRRNRIS------PNVYTLNMVMHAFCKLGIIERAVEV 285
N F + + V F+ R +S + + N + A C G +E+A+++
Sbjct: 14 NLFQLASHKAPNVLPYWNFHGRKRSRGLSVAASSSSSTHDSNSQLRALCSHGQLEQALKL 73
Query: 286 FKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCK 345
++M+ + Y L K + + + + V N ++ F +
Sbjct: 74 LESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR 133
Query: 346 KGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILT 405
G+L A +F +M ++ ++N L+ GY + G + LY ML G++ D+ T
Sbjct: 134 FGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYT 189
Query: 406 Y 406
+
Sbjct: 190 F 190
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 300 TYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNV 333
TYNTLI G C G + A++ M++ GI+P+V
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 264 YTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSV 298
T N ++ CK G +E A+E+FK M+ G P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-05
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 333 VITFNTLIFGFCKKGKLHEANRIFSEMKATNVSP 366
+ T+N L+ K G A + EMKA+ + P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 3e-05
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 334 ITFNTLIFGFCKKGKLHEANRIFSEMK 360
+T+N+LI G+CK GKL EA +F EMK
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 6e-05
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 440 TYSALITGQCVRKNSERAFQLYKSMIRSGCRPN 472
TY+ LI G C E A +L+K M G P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 8e-05
Identities = 55/284 (19%), Positives = 117/284 (41%), Gaps = 30/284 (10%)
Query: 267 NMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEK 326
N ++ F + G + A VF M + ++N L+ G+ G A+ + M
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 327 NGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTY---------NTLING 377
G++P+V TF + L I + V +VV + N LI
Sbjct: 181 AGVRPDVYTFPCV---------LRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231
Query: 378 YGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPN 437
Y + G+ +++ M R D +++NA+I G + G+ + L + + S+ P+
Sbjct: 232 YVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287
Query: 438 ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLL 497
T +++I+ + + +++ ++++G + + L+ + + A +V
Sbjct: 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347
Query: 498 EMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLP 541
M K D++ + + SG G + A++ + ME + P
Sbjct: 348 RMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 300 TYNTLISGHCNKGLLSLAMKFKNLMEKNGI 329
TYN+LISG+C G L A++ M++ G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (89), Expect = 3e-04
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 397 NGIKVDILTYNALILGLCKEGKTKKAAYLVKD 428
G+K D++TYN LI GLC+ G+ +A L+ +
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 7e-04
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNA 438
TYN LI GLCK G+ ++A L K++ + + P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 467 SGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEM 499
G +P+ + L+ C+ D A E+L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 41/201 (20%), Positives = 80/201 (39%), Gaps = 4/201 (1%)
Query: 337 NTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLR 396
N+ + C G+L +A ++ M+ V + Y L E G+ + L
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 397 NGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSER 456
+ + + NA++ + G+ A Y+ + + L +++ L+ G +
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLF----SWNVLVGGYAKAGYFDE 170
Query: 457 AFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYS 516
A LY M+ +G RP+ + F ++ T D R EV ++ D +++ L +
Sbjct: 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230
Query: 517 GLHHCGKDELAMKLFRKMEIR 537
CG A +F +M R
Sbjct: 231 MYVKCGDVVSARLVFDRMPRR 251
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 264 YTLNMVMHAFCKLGIIERAVEVFKNMESMGF 294
T N ++ +CK G +E A+E+FK M+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 440 TYSALITGQCVRKNSERAFQLYKSMIRSGCRP 471
TY+AL+ + + A + + M SG +P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 368 VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIK 400
+ TYN L+ + G+ ++ ++ EEM +G+K
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 565 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.73 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.72 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.69 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.62 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.62 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.61 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.59 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.58 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.57 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.57 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.56 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.54 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.51 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.51 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.47 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.44 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.42 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.4 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.38 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.38 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.38 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.37 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.36 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.34 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.31 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.3 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.29 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.28 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.27 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.23 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.21 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.16 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.15 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.15 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.13 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.12 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.12 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.09 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.09 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.08 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.06 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.06 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.05 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.05 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.03 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.02 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.0 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.98 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.95 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.95 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.94 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.91 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.85 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.84 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.83 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.82 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.78 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.78 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.78 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.77 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.76 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.74 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.72 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.7 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.68 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.62 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.62 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.6 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.59 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.58 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.58 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.58 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.57 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.56 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.55 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.53 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.53 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.51 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.51 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.49 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.49 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.48 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.48 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.45 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.44 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.44 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.43 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.4 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.4 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.34 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.33 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.3 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.27 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.25 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.24 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.18 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.13 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.12 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.1 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.06 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.02 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.0 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.99 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.94 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.92 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.92 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.9 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.85 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.85 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.85 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.82 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.72 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.69 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.69 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.64 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.63 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.63 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.62 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.61 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.6 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.59 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.59 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.55 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.54 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.49 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.48 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.47 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.47 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.45 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.44 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.42 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.41 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.4 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.38 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.37 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.36 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.36 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.3 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.29 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.29 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.27 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.25 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.23 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.22 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.2 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.14 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.14 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.14 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.12 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.09 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.09 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.03 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.03 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.02 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.0 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.97 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.97 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.92 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.88 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.87 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.85 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.82 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.79 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.78 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.77 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.77 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.77 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.67 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.66 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.66 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.6 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.38 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.38 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.37 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.33 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.32 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.32 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.25 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.18 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.17 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.05 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.03 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.02 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.02 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.0 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.92 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.81 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.8 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.76 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.72 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.66 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.65 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.6 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.53 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.43 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.41 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.39 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.38 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.38 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.37 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.33 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.29 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.27 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.21 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.16 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.13 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.09 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.06 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.73 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.7 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.62 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.49 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.38 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 94.27 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.23 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.22 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.13 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.09 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.92 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.91 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.81 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.81 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.78 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.77 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.74 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.73 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.47 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.38 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.05 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.02 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.01 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.93 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.9 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.86 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.85 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.6 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.57 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.09 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.95 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.92 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.91 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.89 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 91.85 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 91.83 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.78 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.04 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.6 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.5 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.31 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 89.87 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.66 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.1 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.04 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 89.02 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.6 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 88.16 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.96 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 87.19 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.01 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 86.86 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.28 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.13 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.0 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.77 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 85.59 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 85.48 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.08 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 85.0 | |
| PRK09687 | 280 | putative lyase; Provisional | 84.85 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 84.84 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 84.69 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.17 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 83.79 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.78 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.45 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.6 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.24 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 81.72 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 81.65 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 81.62 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.36 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 81.2 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 80.74 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 80.67 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 80.35 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 80.19 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.19 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 80.04 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-61 Score=516.91 Aligned_cols=419 Identities=20% Similarity=0.322 Sum_probs=384.0
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHH
Q 008454 118 KDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFD 197 (565)
Q Consensus 118 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (565)
+....|+++|+.+.. ++..+|..++.+|++.|+++.|..+++.|.+.| ..++..+|+
T Consensus 420 g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G------------------l~pD~~tyn 476 (1060)
T PLN03218 420 RAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG------------------LKADCKLYT 476 (1060)
T ss_pred CCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------------------CCCCHHHHH
Confidence 455666666665542 567777777777777777777777777777765 567899999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 477 sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008454 278 IIERAVEVFKNMES--MGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRI 355 (565)
Q Consensus 278 ~~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 355 (565)
++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++
T Consensus 557 ~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999986 5889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 356 FSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLV 435 (565)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (565)
|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008454 436 PNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELY 515 (565)
Q Consensus 436 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 515 (565)
||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLI 796 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHh----c-------------------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhcccCCCc
Q 008454 516 SGLHH----C-------------------GKDELAMKLFRKMEIRGLLPKGFDKLRTINCAPENGEK 559 (565)
Q Consensus 516 ~~~~~----~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 559 (565)
..|.+ + +..++|..+|++|.+.|+.||..||..++.|+...+..
T Consensus 797 glc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~ 863 (1060)
T PLN03218 797 GLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDA 863 (1060)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccH
Confidence 65432 1 12467999999999999999999999999777665543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-61 Score=515.59 Aligned_cols=416 Identities=19% Similarity=0.308 Sum_probs=398.9
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHH
Q 008454 117 QKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVF 196 (565)
Q Consensus 117 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (565)
.+++..|+++|++|......+++...+..++..+.+.|..++|..+++.|.. ++..+|
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----------------------pd~~Ty 440 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----------------------PTLSTF 440 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----------------------CCHHHH
Confidence 4678888999998888765666777778888888888888888888876643 478999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 197 DLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKL 276 (565)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 276 (565)
+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 277 GIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEK--NGIQPNVITFNTLIFGFCKKGKLHEANR 354 (565)
Q Consensus 277 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~ 354 (565)
|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.+++++|.. .|+.||..+|+.+|.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 6789999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 355 IFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSL 434 (565)
Q Consensus 355 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 434 (565)
+|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008454 435 VPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSEL 514 (565)
Q Consensus 435 ~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 514 (565)
.|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhcc
Q 008454 515 YSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAP 554 (565)
Q Consensus 515 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 554 (565)
+.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-59 Score=495.87 Aligned_cols=414 Identities=17% Similarity=0.231 Sum_probs=369.2
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHH
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLV 195 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (565)
..+++..|+++|+|+....++.++..+|..++.++++.++++.+..++..+.+.| ..++..+
T Consensus 99 ~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g------------------~~~~~~~ 160 (697)
T PLN03081 99 ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG------------------FEPDQYM 160 (697)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC------------------CCcchHH
Confidence 4568999999999999877788999999999999999999999999999999987 4567888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK 275 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 275 (565)
|+.|+..|++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 99999999999999999999999875 78889999999999999999999999999888888999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008454 276 LGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRI 355 (565)
Q Consensus 276 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 355 (565)
.|+.+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.. +|..+|+.+|.+|++.|++++|+++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999998889889999999999999999999999999988864 5888999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 356 FSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLV 435 (565)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (565)
|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---- 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---- 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----
Confidence 9999888889999999999999999999999999999999999889999999999999999999999999988864
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHH
Q 008454 436 PNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLE-KCMAPDSIILSEL 514 (565)
Q Consensus 436 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l 514 (565)
||..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+ .|+.|+..+|+.+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 688889999999999999999999999999889999999999999999999999999999999875 5888999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhcccCCCccCC
Q 008454 515 YSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAPENGEKESG 562 (565)
Q Consensus 515 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~ 562 (565)
+++|++.|+.++|.+++++| ++.|+..+|++++.+|...|+.+.|
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 99999999999998888765 6788999999999999888887754
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-55 Score=481.29 Aligned_cols=428 Identities=19% Similarity=0.249 Sum_probs=302.9
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcc--------
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYR-------- 187 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~-------- 187 (565)
..++...|+++|+.+.. ++..+|+.++.++++.|++++|..+|++|.+.| +.+....|..++..+.
T Consensus 133 ~~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g-~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 133 RFGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred hCCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHhCCccchhhH
Confidence 34577888888887753 467789999999999999999999999998875 4455566666665432
Q ss_pred ----------cCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 008454 188 ----------MCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRN 257 (565)
Q Consensus 188 ----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 257 (565)
...++..+|+.|+.+|++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~ 282 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMREL 282 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 2345777788888888888888888888888865 67778888888888888888888888888888
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 008454 258 RISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFN 337 (565)
Q Consensus 258 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 337 (565)
|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||..+|+
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n 358 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWT 358 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888775 35777788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 338 TLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEG 417 (565)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 417 (565)
.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.|.+.|+.++..+|+.|+.+|++.|
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 88888888888888888888888777788888888888888888888888888888887777777777777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------------------
Q 008454 418 KTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIR------------------------------- 466 (565)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~------------------------------- 466 (565)
++++|.++|++|.+. |..+|+.+|.+|++.|+.++|+++|++|..
T Consensus 439 ~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 439 CIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred CHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 777777777766432 223333333333333333333333333321
Q ss_pred ---cCC------------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 008454 467 ---SGC------------------------------RPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSE 513 (565)
Q Consensus 467 ---~~~------------------------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 513 (565)
.|+ .+|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 110 34455566666666666666666666666655555666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHhhHHHHHhhcccCCCccC
Q 008454 514 LYSGLHHCGKDELAMKLFRKME-IRGLLPKGFDKLRTINCAPENGEKES 561 (565)
Q Consensus 514 li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~ 561 (565)
++.+|++.|++++|.++|++|. +.|+.|+..+|..++.++.+.|+.++
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~e 643 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE 643 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH
Confidence 6666666666666666666655 44555665556656655555555543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-55 Score=465.51 Aligned_cols=424 Identities=16% Similarity=0.221 Sum_probs=392.5
Q ss_pred CCChHHHHHHHHhhc--CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHH
Q 008454 103 HLTPFRVKHVLLKVQ--KDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFD 180 (565)
Q Consensus 103 ~l~~~~~~~~l~~~~--~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~ 180 (565)
.++......++..+. ++...|.+++..+.+. ++.++..+|+.++..+++.|+++.|..+|++|.+.
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~----------- 187 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESS-GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----------- 187 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCC-----------
Confidence 456666666665443 4788899999888875 57789999999999999999999999999988543
Q ss_pred HHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 008454 181 SILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRIS 260 (565)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~ 260 (565)
+..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.+.|+.
T Consensus 188 -----------~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~ 256 (697)
T PLN03081 188 -----------NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV 256 (697)
T ss_pred -----------CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCC
Confidence 778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 261 PNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLI 340 (565)
Q Consensus 261 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 340 (565)
||..+|+.||.+|++.|++++|.++|++|.+ +|..+|++++.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll 332 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9999999999999999999999999999974 599999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008454 341 FGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTK 420 (565)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 420 (565)
.+|++.|++++|.+++..|.+.|+.+|..+|+.||.+|++.|++++|.++|++|.+ +|..+||.||.+|++.|+.+
T Consensus 333 ~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~ 408 (697)
T PLN03081 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGT 408 (697)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999964 68899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 421 KAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIR-SGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEM 499 (565)
Q Consensus 421 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 499 (565)
+|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++|
T Consensus 409 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999986 599999999999999999999999999998765
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHhhcccCCCccCC
Q 008454 500 LEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPK-GFDKLRTINCAPENGEKESG 562 (565)
Q Consensus 500 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~~ 562 (565)
++.|+..+|+.|+.+|...|+++.|.++++++. ++.|+ ..+|..+++.|++.|+.+.+
T Consensus 489 ---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 489 ---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred ---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHHHHHHHhCCCHHHH
Confidence 578999999999999999999999999999995 45564 67999999999999988754
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=471.01 Aligned_cols=443 Identities=16% Similarity=0.249 Sum_probs=325.4
Q ss_pred CChHHHHHHHHhh--cCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcC-----------
Q 008454 104 LTPFRVKHVLLKV--QKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSD----------- 170 (565)
Q Consensus 104 l~~~~~~~~l~~~--~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~----------- 170 (565)
++......++..+ .+....+.+++..+.+.. ..++...++.++..+++.|+++.|..+|++|.+.+
T Consensus 84 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~ 162 (857)
T PLN03077 84 VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSH-PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGY 162 (857)
T ss_pred CChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHH
Confidence 3444444443332 235667777777766544 34566677777777777777777777777765421
Q ss_pred ----CCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHH
Q 008454 171 ----SFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDI 246 (565)
Q Consensus 171 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 246 (565)
....+..+|+.+.. ....|+..+|+.++++|++.+++..+.+++..|.+.|+.||+.+||.++.+|++.|++++
T Consensus 163 ~~~g~~~~A~~~f~~M~~--~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 240 (857)
T PLN03077 163 AKAGYFDEALCLYHRMLW--AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240 (857)
T ss_pred HhCCCHHHHHHHHHHHHH--cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHH
Confidence 11111222222221 123445555555555555555555555555555555555555666777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008454 247 ALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEK 326 (565)
Q Consensus 247 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 326 (565)
|.++|++|. .||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+
T Consensus 241 A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 241 ARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred HHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 777777775 3577778888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 008454 327 NGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTY 406 (565)
Q Consensus 327 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 406 (565)
.|+.||..+|+.++.+|++.|++++|.++|++|. .+|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 317 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 8888888888888888888888888888888875 367778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008454 407 NALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQN 486 (565)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 486 (565)
+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLN 468 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHC
Confidence 888888888888888888888888888888888888888888888888888888888763 4556677777777777
Q ss_pred CCHHHHHHHHHHHHHcCC--------------------------------------------------------------
Q 008454 487 EDFDRAAEVLLEMLEKCM-------------------------------------------------------------- 504 (565)
Q Consensus 487 g~~~~A~~~~~~~~~~~~-------------------------------------------------------------- 504 (565)
|+.++|..+|++|.. ++
T Consensus 469 g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 469 NRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 777777777766653 23
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhcccCCCccCC
Q 008454 505 ---APDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAPENGEKESG 562 (565)
Q Consensus 505 ---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~ 562 (565)
.+|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||..++.+|.+.|+.++|
T Consensus 548 ~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 548 NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG 608 (857)
T ss_pred HhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHH
Confidence 3455678888899999999999999999999999999999999999999999988764
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-25 Score=248.06 Aligned_cols=431 Identities=15% Similarity=0.088 Sum_probs=349.5
Q ss_pred hhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCC------------------CCcH
Q 008454 115 KVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSF------------------DLPS 176 (565)
Q Consensus 115 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~------------------~~~~ 176 (565)
...++++.|+++++.+....+ .+...+..+..++...|++++|...++++++.... ..+.
T Consensus 442 ~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 442 LRSGQFDKALAAAKKLEKKQP--DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred HhcCCHHHHHHHHHHHHHhCC--CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 345677777777776665433 45566777777777777777777777776654211 1112
Q ss_pred HHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 177 KLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
..+..++. ..+.+..++..+...+.+.|++++|...|+++.+.+.. +...+..++..+...|++++|..+++.+.+
T Consensus 520 ~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 520 QRFEKVLT---IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHH---hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22233322 24556778888899999999999999999998876643 677888889999999999999999999876
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 008454 257 NRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITF 336 (565)
Q Consensus 257 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 336 (565)
.. +.+...|..+..++...|++++|...++++.+... .+...+..+...+.+.|++++|..+++++.+.. +.+..++
T Consensus 596 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 596 AA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 53 45778899999999999999999999999887643 367778888999999999999999999988764 3467888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 337 NTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKE 416 (565)
Q Consensus 337 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 416 (565)
..++..+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|...|+.+...+ |+..++..++.++.+.
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 749 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLAS 749 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHC
Confidence 999999999999999999999998875 5567788888899999999999999999998865 3447777889999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 417 GKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVL 496 (565)
Q Consensus 417 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 496 (565)
|++++|...++.+.+.... +...+..+...|...|+.++|.+.|+++++.. +.+..++..+...+...|+ .+|+.++
T Consensus 750 g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~ 826 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYA 826 (899)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence 9999999999999886543 78889999999999999999999999999875 6678889999999999999 8899999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhcccCCCccCC
Q 008454 497 LEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAPENGEKESG 562 (565)
Q Consensus 497 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~~ 562 (565)
+++.+.. +-+..++..+...+...|++++|.+.|+++.+.+.. +..++..+..++.+.|+.+++
T Consensus 827 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 827 EKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred HHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHH
Confidence 9998863 335667888889999999999999999999988754 888999999999999988765
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-24 Score=242.12 Aligned_cols=412 Identities=14% Similarity=0.061 Sum_probs=342.8
Q ss_pred HHHHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHh---
Q 008454 109 VKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYS--- 185 (565)
Q Consensus 109 ~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~--- 185 (565)
....+....+++..|.+.|+.+....+ .+...+..++.++...|++++|...++++.+.+.. ....+..+...
T Consensus 470 ~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 545 (899)
T TIGR02917 470 LLGAIYLGKGDLAKAREAFEKALSIEP--DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK--NLRAILALAGLYLR 545 (899)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHH
Confidence 344445566778888888877776543 45566777777777788888888887777665321 11111111111
Q ss_pred --------------cccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHH
Q 008454 186 --------------YRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFY 251 (565)
Q Consensus 186 --------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~ 251 (565)
....+.+...+..++..|.+.|++++|+++++.+.+... .+...|..+...+...|++++|...|
T Consensus 546 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 546 TGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred cCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 122455667788899999999999999999999987653 37889999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 008454 252 KEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQP 331 (565)
Q Consensus 252 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 331 (565)
+.+.+.. +.+...+..+...+...|++++|..+++++.+... .+..++..++..+...|++++|.++++.+.+.+ +.
T Consensus 625 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 701 (899)
T TIGR02917 625 KKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PK 701 (899)
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC
Confidence 9998764 34677888999999999999999999999987643 368889999999999999999999999999876 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 332 NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALIL 411 (565)
Q Consensus 332 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 411 (565)
+...+..+...+.+.|++++|.+.|+.+...+ |+..++..++.++.+.|++++|.+.++.+.+... .+...+..+..
T Consensus 702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~ 778 (899)
T TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAE 778 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 77888889999999999999999999998874 5557788899999999999999999999998754 47889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008454 412 GLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDR 491 (565)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 491 (565)
.|...|+.++|...|+++.+... .+...++.+...+...|+ .+|+.+++++.+.. +-+..++..+...+...|++++
T Consensus 779 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 779 LYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADR 855 (899)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999998764 378899999999999999 88999999999864 4556778888899999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 492 AAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
|..+++++++.+.. +..++..+..++++.|+.++|.+++++|.
T Consensus 856 A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 856 ALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999999998654 88999999999999999999999999986
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-21 Score=193.14 Aligned_cols=301 Identities=15% Similarity=0.119 Sum_probs=214.7
Q ss_pred HHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCC
Q 008454 237 SLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPS---VTTYNTLISGHCNKGL 313 (565)
Q Consensus 237 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~ 313 (565)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445566666777776666543 22445666666666677777777777776665432211 2445666777777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHH
Q 008454 314 LSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPN----VVTYNTLINGYGQVGNSEMGAS 389 (565)
Q Consensus 314 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~ 389 (565)
+++|..+++++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..++ ...+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777776642 23566777777777777777777777777766532221 1234556667777888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008454 390 LYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGC 469 (565)
Q Consensus 390 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 469 (565)
.++++.+... .+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|+..|++++|...++++.+.
T Consensus 202 ~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 8888876532 2456777788888888888888888888876543322456788888899999999999999998876
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHh
Q 008454 470 RPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHH---CGKDELAMKLFRKMEIRGLLPKGF 544 (565)
Q Consensus 470 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 544 (565)
.|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..++. .|+.+++..++++|.++++.|+..
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 466667788888899999999999999988875 5788888888877765 558889999999999888777765
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-20 Score=189.32 Aligned_cols=303 Identities=15% Similarity=0.095 Sum_probs=255.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHc
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPN---VYTLNMVMHAFCKL 276 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~ 276 (565)
...+...|++++|+..|+++.+.+.. +..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 44567889999999999999997643 677899999999999999999999999987532222 35678889999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHH
Q 008454 277 GIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPN----VITFNTLIFGFCKKGKLHEA 352 (565)
Q Consensus 277 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A 352 (565)
|++++|..+|+++.+.. ..+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998763 34678899999999999999999999999988754332 22456677888999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 353 NRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKN 432 (565)
Q Consensus 353 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (565)
.+.++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++.+.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998764 34566788889999999999999999999998644333567889999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHH
Q 008454 433 SLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ---NEDFDRAAEVLLEMLEKCMAPDSI 509 (565)
Q Consensus 433 ~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 509 (565)
.|+...+..++..+.+.|++++|..+++++++. .|+...+..++..+.. .|+.+++..++++|.+.++.|+..
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 456667788999999999999999999999986 6898899988888775 568999999999999887776665
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-18 Score=194.27 Aligned_cols=413 Identities=10% Similarity=0.028 Sum_probs=262.3
Q ss_pred HHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCC
Q 008454 111 HVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCD 190 (565)
Q Consensus 111 ~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (565)
.......+++..|+..|+.+.+..| .+.+.+..+..++.+.|++++|...|++.++...-......+..++...
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~---- 349 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANP--KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN---- 349 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh----
Confidence 3445567899999999999998764 5788999999999999999999999999998643221111122111100
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVM 270 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 270 (565)
.-.........+.+.|++++|++.|+++.+.... +...+..+...+...|++++|++.|++..+... .+...+..+.
T Consensus 350 -~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~ 426 (1157)
T PRK11447 350 -RYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLA 426 (1157)
T ss_pred -hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 0001122344566677777777777777765432 556666677777777777777777777765431 2333443333
Q ss_pred HH------------------------------------------HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008454 271 HA------------------------------------------FCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGH 308 (565)
Q Consensus 271 ~~------------------------------------------~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 308 (565)
.. +...|++++|++.|++..+.... +...+..+...|
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~ 505 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDL 505 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 33 33445555555555555544222 334444455555
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---------HHHHHHHHHHH
Q 008454 309 CNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNV---------VTYNTLINGYG 379 (565)
Q Consensus 309 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---------~~~~~li~~~~ 379 (565)
.+.|++++|...++++.+.. +.+...+..+...+...++.++|+..++.+......++. ..+..+...+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 55555555555555554432 113333333333344455555555555544322111111 01122344556
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008454 380 QVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQ 459 (565)
Q Consensus 380 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 459 (565)
..|+.++|..+++. ...+...+..+...+.+.|++++|...|+++.+.... +...+..++..+...|++++|++
T Consensus 585 ~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 66777777766651 2345566778888899999999999999999887544 67788899999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C---CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 460 LYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMA--P---DSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 460 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p---~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
.++.+.+.. +.+..++..+..++...|++++|.+++++++..... | +...+..+...+...|++++|...|++.
T Consensus 659 ~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 659 QLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999887653 344566777788888999999999999998875322 2 2346667788888999999999999987
Q ss_pred HH-CCCCC
Q 008454 535 EI-RGLLP 541 (565)
Q Consensus 535 ~~-~g~~p 541 (565)
.. .|+.|
T Consensus 738 l~~~~~~~ 745 (1157)
T PRK11447 738 MVASGITP 745 (1157)
T ss_pred HhhcCCCC
Confidence 53 34543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-18 Score=193.24 Aligned_cols=436 Identities=11% Similarity=0.027 Sum_probs=299.6
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCC------------------CcHH
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFD------------------LPSK 177 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~------------------~~~~ 177 (565)
..+++..|++.++.+.+..| .+...+..+..++...|++++|...++++.+..... ....
T Consensus 159 ~~g~~~~A~~~L~~ll~~~P--~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~ 236 (1157)
T PRK11447 159 LPAQRPEAINQLQRLNADYP--GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVA 236 (1157)
T ss_pred CCccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHH
Confidence 45789999999999988765 467788889999999999999999999987643110 1111
Q ss_pred HHHHHHHhcccCC----------------CChH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc
Q 008454 178 LFDSILYSYRMCD----------------SSPL-VFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLD 240 (565)
Q Consensus 178 ~~~~~~~~~~~~~----------------~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 240 (565)
.+...+..++... .++. ........+...|++++|+..|++..+.... +...+..+...+.+
T Consensus 237 ~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~ 315 (1157)
T PRK11447 237 ALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQ 315 (1157)
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 2222222222111 0111 1113355677889999999999999887643 78889999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCC-CHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008454 241 SERVDIALGFYKEMRRNRISP-NVYTL------------NMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISG 307 (565)
Q Consensus 241 ~~~~~~A~~~~~~m~~~~~~p-~~~~~------------~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 307 (565)
.|++++|+..|++..+..... +...+ ......+.+.|++++|++.|+++.+... .+...+..+...
T Consensus 316 ~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~ 394 (1157)
T PRK11447 316 QGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDV 394 (1157)
T ss_pred cCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 999999999999988754321 11112 1223456788999999999999988743 256777788899
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH------------------------------------------HHHHHH
Q 008454 308 HCNKGLLSLAMKFKNLMEKNGIQPNVITFNTL------------------------------------------IFGFCK 345 (565)
Q Consensus 308 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l------------------------------------------i~~~~~ 345 (565)
+...|++++|++.+++..+... .+...+..+ ...+..
T Consensus 395 ~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~ 473 (1157)
T PRK11447 395 AMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN 473 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999999999999887532 123333222 234456
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008454 346 KGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYL 425 (565)
Q Consensus 346 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 425 (565)
.|++++|++.+++..+.. +-+...+..+...|.+.|++++|...++++.+.... +...+..+...+...++.++|...
T Consensus 474 ~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 788888888888887764 335566777888888889999999998888765332 333333333333344444444443
Q ss_pred HHHHHhC---------------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 426 VKDLDKN---------------------------------------SLVPNASTYSALITGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 426 ~~~~~~~---------------------------------------~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 466 (565)
++.+... ....+...+..+...+.+.|++++|++.|+++++
T Consensus 552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~ 631 (1157)
T PRK11447 552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT 631 (1157)
T ss_pred HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3322110 0123445566777888889999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C---
Q 008454 467 SGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLL--P--- 541 (565)
Q Consensus 467 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--- 541 (565)
.. +.+...+..++..+...|++++|.+.++.+.+.. +.+..++..+..++...|++++|.++++++....-. |
T Consensus 632 ~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~ 709 (1157)
T PRK11447 632 RE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSME 709 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchh
Confidence 74 5567888889999999999999999999887642 234556777788888999999999999998765321 2
Q ss_pred CHhhHHHHHhhcccCCCcc
Q 008454 542 KGFDKLRTINCAPENGEKE 560 (565)
Q Consensus 542 ~~~~~~~ll~~~~~~g~~~ 560 (565)
+...+..+.+.+...|+.+
T Consensus 710 ~a~~~~~~a~~~~~~G~~~ 728 (1157)
T PRK11447 710 SALVLRDAARFEAQTGQPQ 728 (1157)
T ss_pred hHHHHHHHHHHHHHcCCHH
Confidence 2234444455555555544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-18 Score=179.52 Aligned_cols=370 Identities=13% Similarity=0.021 Sum_probs=282.6
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 142 THSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRD 221 (565)
Q Consensus 142 ~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 221 (565)
.+......+.+.|+++.|...+++.++.. +++..|..+..+|.+.|++++|++.++...+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--------------------p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~ 188 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--------------------PDPVYYSNRAACHNALGDWEKVVEDTTAALE 188 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------CchHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566777788899999999998887752 2466788888889999999999999999888
Q ss_pred CCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC----------------------------C-CC---HHHHHHH
Q 008454 222 YGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRI----------------------------S-PN---VYTLNMV 269 (565)
Q Consensus 222 ~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~----------------------------~-p~---~~~~~~l 269 (565)
.+.. +..+|..+..++...|++++|+..|......+. . .+ .......
T Consensus 189 l~p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 267 (615)
T TIGR00990 189 LDPD-YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNY 267 (615)
T ss_pred cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 6533 677888888999999999888766544322110 0 00 0000000
Q ss_pred ---------------------------HHHH------HHcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCh
Q 008454 270 ---------------------------MHAF------CKLGIIERAVEVFKNMESMG-FIP-SVTTYNTLISGHCNKGLL 314 (565)
Q Consensus 270 ---------------------------i~~~------~~~g~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~ 314 (565)
+... ...+++++|.+.|+...+.+ ..| ....|..+...+...|++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~ 347 (615)
T TIGR00990 268 LQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH 347 (615)
T ss_pred HHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Confidence 0000 12357889999999998764 223 456778888889999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 315 SLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEM 394 (565)
Q Consensus 315 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 394 (565)
++|+..+++..+.. +-+...|..+...+...|++++|+..|+++.+.. +.+...|..+...+...|++++|...|++.
T Consensus 348 ~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ka 425 (615)
T TIGR00990 348 LEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKS 425 (615)
T ss_pred HHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998763 2246688888899999999999999999998764 456788999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-
Q 008454 395 LRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNK- 473 (565)
Q Consensus 395 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~- 473 (565)
.+.... +...+..+...+.+.|++++|+..|++..+.... +...|+.+...+...|++++|++.|++.++..-..+.
T Consensus 426 l~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~ 503 (615)
T TIGR00990 426 IDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPM 503 (615)
T ss_pred HHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccc
Confidence 987543 6778888999999999999999999999876432 5778999999999999999999999999876311111
Q ss_pred -----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 474 -----HIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 474 -----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
..++..+..+...|++++|.+++++.++... .+...+..+...+.+.|++++|.+.|++..+.
T Consensus 504 ~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 504 YMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1122222234456999999999999988642 34457888999999999999999999998655
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-18 Score=179.49 Aligned_cols=333 Identities=11% Similarity=0.004 Sum_probs=276.9
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 143 HSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDY 222 (565)
Q Consensus 143 ~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 222 (565)
...++..+.+.|++++|..+++..+.. .+.++.....++.+....|++++|++.|+++.+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~-------------------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~ 105 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLT-------------------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV 105 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHh-------------------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh
Confidence 455667778899999999999999887 4566777888888888999999999999999987
Q ss_pred CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008454 223 GFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYN 302 (565)
Q Consensus 223 ~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 302 (565)
... +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+...... +...+.
T Consensus 106 ~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~ 182 (656)
T PRK15174 106 NVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIA 182 (656)
T ss_pred CCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHH
Confidence 644 67889999999999999999999999998753 345778888999999999999999999988766433 333343
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008454 303 TLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVG 382 (565)
Q Consensus 303 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 382 (565)
.+ ..+...|++++|...++.+.+....++...+..+...+.+.|++++|+..++++.+.. +.+...+..+...+...|
T Consensus 183 ~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G 260 (656)
T PRK15174 183 TC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSG 260 (656)
T ss_pred HH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 33 3478899999999999998876433445555666788999999999999999998875 456778888999999999
Q ss_pred ChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 383 NSEM----GASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAF 458 (565)
Q Consensus 383 ~~~~----A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 458 (565)
++++ |...|++..+.... +...+..+...+.+.|++++|...++++.+.... +...+..+...+...|++++|+
T Consensus 261 ~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~ 338 (656)
T PRK15174 261 RSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAAS 338 (656)
T ss_pred CchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 9986 89999999987543 6788999999999999999999999999987544 5667888899999999999999
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008454 459 QLYKSMIRSGCRPNK-HIFEMLMSTFCQNEDFDRAAEVLLEMLEKC 503 (565)
Q Consensus 459 ~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 503 (565)
..++.+.+. .|+. ..+..+..++...|+.++|...|+++.+..
T Consensus 339 ~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 339 DEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999986 3544 334445678899999999999999998763
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-18 Score=179.33 Aligned_cols=336 Identities=11% Similarity=0.023 Sum_probs=276.1
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMH 271 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 271 (565)
+..-...++..+.+.|++++|+.+++........ +...+..++.+....|++++|...|+++.+.. +.+...+..+..
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~ 118 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVAS 118 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3344556778889999999999999999987755 56667777788888999999999999998864 335678888899
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008454 272 AFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHE 351 (565)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 351 (565)
.+...|++++|...++++.+... .+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHH
Confidence 99999999999999999988632 25778888999999999999999999988766433 33344333 34788999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHH
Q 008454 352 ANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKK----AAYLVK 427 (565)
Q Consensus 352 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~ 427 (565)
|...++.+.+....++...+..+..++...|++++|...++++.+.+.. +...+..+...+...|++++ |...++
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999999877643344555566678889999999999999999987543 67888889999999999986 899999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008454 428 DLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPD 507 (565)
Q Consensus 428 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 507 (565)
.+.+.... +...+..+...+...|++++|+..++++++.. +.+...+..+..++.+.|++++|...++++.+. .|+
T Consensus 275 ~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~ 350 (656)
T PRK15174 275 HALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGV 350 (656)
T ss_pred HHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc
Confidence 99886543 67789999999999999999999999999874 445677888899999999999999999999886 344
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 508 S-IILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 508 ~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
. ..+..+..++...|+.++|...|++..+.
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3 33444567889999999999999998766
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-19 Score=168.72 Aligned_cols=389 Identities=15% Similarity=0.111 Sum_probs=321.9
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHH
Q 008454 118 KDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFD 197 (565)
Q Consensus 118 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (565)
.+.+.....-..+++.. +...++|..+.+++-..|++++|..+++.+++. .+.....|.
T Consensus 96 ~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel-------------------~p~fida~i 154 (966)
T KOG4626|consen 96 SRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIEL-------------------KPKFIDAYI 154 (966)
T ss_pred cchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhc-------------------CchhhHHHh
Confidence 34554444444455443 357899999999999999999999999999987 455678899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHH-HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESC-NKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKL 276 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 276 (565)
.+..++...|+.+.|.+.|.+..+.+ |+.... ..+...+-..|+..+|..-|.+.++... --...|..|...+-.+
T Consensus 155 nla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~ 231 (966)
T KOG4626|consen 155 NLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQ 231 (966)
T ss_pred hHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhc
Confidence 99999999999999999999999865 654443 3455556668999999999998877532 2356788899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008454 277 GIIERAVEVFKNMESMGFIPS-VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRI 355 (565)
Q Consensus 277 g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 355 (565)
|+.-.|+.-|++..+.. |+ ...|-.|...|...+.+++|...+.+..... +-..+++..+...|...|.+|-|+..
T Consensus 232 Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~ 308 (966)
T KOG4626|consen 232 GEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDT 308 (966)
T ss_pred chHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHH
Confidence 99999999999998763 44 6778889999999999999999999887763 22577888888999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 356 FSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLV 435 (565)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (565)
+++..+.. +-=...|+.|..++-..|++.+|.+.|++....... .....+.|...|...|.+++|..+|....+- .
T Consensus 309 Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~ 384 (966)
T KOG4626|consen 309 YKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--F 384 (966)
T ss_pred HHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--C
Confidence 99998863 223578999999999999999999999999987433 5677888999999999999999999998874 3
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHH
Q 008454 436 PN-ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPN-KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDS-IILS 512 (565)
Q Consensus 436 p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~ 512 (565)
|. ...++.|...|-+.|++++|+..|++.++- .|+ ...|+.+...|-..|+.+.|.+.+.+++.. .|.. ...+
T Consensus 385 p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhs 460 (966)
T KOG4626|consen 385 PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHS 460 (966)
T ss_pred hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHh
Confidence 43 346889999999999999999999999974 666 578999999999999999999999999874 4443 5788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008454 513 ELYSGLHHCGKDELAMKLFRKMEIRGLLPKG 543 (565)
Q Consensus 513 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 543 (565)
.|...|-..|+..+|.+-|++..+. +||.
T Consensus 461 NLasi~kDsGni~~AI~sY~~aLkl--kPDf 489 (966)
T KOG4626|consen 461 NLASIYKDSGNIPEAIQSYRTALKL--KPDF 489 (966)
T ss_pred hHHHHhhccCCcHHHHHHHHHHHcc--CCCC
Confidence 8999999999999999999998654 5553
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-17 Score=175.02 Aligned_cols=365 Identities=11% Similarity=-0.042 Sum_probs=285.4
Q ss_pred HHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCC
Q 008454 111 HVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCD 190 (565)
Q Consensus 111 ~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (565)
+......+++..|++.|+.+....| +...|..+..++.+.|++++|...++..++. .+
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~p---~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l-------------------~p 191 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECKP---DPVYYSNRAACHNALGDWEKVVEDTTAALEL-------------------DP 191 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-------------------CC
Confidence 3445667899999999999998664 5678999999999999999999999999887 45
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH-----------------------------HHHHHHHH-----
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPII-----------------------------ESCNKFLS----- 236 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----------------------------~~~~~ll~----- 236 (565)
.+..++..+..+|...|++++|+.-|..+...+...+. ..+..+..
T Consensus 192 ~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 271 (615)
T TIGR00990 192 DYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSF 271 (615)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc
Confidence 57788889999999999999998766544322110000 00000000
Q ss_pred -------------------------HH------HcCCChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCHHHHH
Q 008454 237 -------------------------SL------LDSERVDIALGFYKEMRRNR-ISP-NVYTLNMVMHAFCKLGIIERAV 283 (565)
Q Consensus 237 -------------------------~~------~~~~~~~~A~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~g~~~~a~ 283 (565)
.. ...+++++|.+.|+...+.+ ..| ....|+.+...+...|++++|+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~ 351 (615)
T TIGR00990 272 RPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEAL 351 (615)
T ss_pred cCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 00 11257889999999988764 223 4567888888899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008454 284 EVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATN 363 (565)
Q Consensus 284 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 363 (565)
..+++..+.... ....|..+...+...|++++|...+++..+.. +.+..+|..+...+...|++++|+..|++..+..
T Consensus 352 ~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 352 ADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999876322 46688888999999999999999999998864 3367889999999999999999999999998874
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH----
Q 008454 364 VSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNAS---- 439 (565)
Q Consensus 364 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---- 439 (565)
+.+...+..+...+.+.|++++|+..|++..+... .+...++.+...+...|++++|...|+...+.....+..
T Consensus 430 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~ 507 (615)
T TIGR00990 430 -PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNV 507 (615)
T ss_pred -ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccH
Confidence 44667788888999999999999999999987633 367889999999999999999999999988754321111
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 440 --TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 440 --~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
.++.....+...|++++|.+++++.++.. +.+...+..+...+...|++++|...|++..+.
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 12222333445699999999999998864 344567889999999999999999999999775
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-16 Score=166.13 Aligned_cols=409 Identities=10% Similarity=0.018 Sum_probs=293.7
Q ss_pred cCCChHHHHHHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHH
Q 008454 102 THLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDS 181 (565)
Q Consensus 102 ~~l~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~ 181 (565)
..++......++....+++..|++.|+.+.+..|..+ ...+ .++.++...|+.++|+..++++...
T Consensus 32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~-~av~-dll~l~~~~G~~~~A~~~~eka~~p------------ 97 (822)
T PRK14574 32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS-GQVD-DWLQIAGWAGRDQEVIDVYERYQSS------------ 97 (822)
T ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch-hhHH-HHHHHHHHcCCcHHHHHHHHHhccC------------
Confidence 3556677888888999999999999999998776321 2233 7788888999999999999998843
Q ss_pred HHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 008454 182 ILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISP 261 (565)
Q Consensus 182 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p 261 (565)
.+........+...|...|++++|+++|+++.+.... +...+..++..+...++.++|++.++.+... .|
T Consensus 98 -------~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp 167 (822)
T PRK14574 98 -------MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DP 167 (822)
T ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--Cc
Confidence 1223344444567888899999999999999998755 5777778888899999999999999998765 45
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH-------------------
Q 008454 262 NVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKN------------------- 322 (565)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~------------------- 322 (565)
+...+..++..+...++..+|++.++++.+.... +...+..++.++.+.|-...|+++..
T Consensus 168 ~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~ 246 (822)
T PRK14574 168 TVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAA 246 (822)
T ss_pred chHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHH
Confidence 5555655555554566676799999999887532 56666667777766665554444332
Q ss_pred -----------------------------HHHH-CCCCCCH-H----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008454 323 -----------------------------LMEK-NGIQPNV-I----TFNTLIFGFCKKGKLHEANRIFSEMKATNVSPN 367 (565)
Q Consensus 323 -----------------------------~m~~-~g~~~~~-~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 367 (565)
.+.. .+..|.. . +..-.+-++...|++.++++.|+.+...+.+..
T Consensus 247 a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P 326 (822)
T PRK14574 247 AEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP 326 (822)
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC
Confidence 2221 0111211 1 112334566777888888888888888776656
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--------
Q 008454 368 VVTYNTLINGYGQVGNSEMGASLYEEMLRNG-----IKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSL-------- 434 (565)
Q Consensus 368 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-------- 434 (565)
..+-..+.++|...+.+++|..++..+.... ..++......|..+|...+++++|..+++.+.+...
T Consensus 327 ~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~ 406 (822)
T PRK14574 327 DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL 406 (822)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC
Confidence 6677788888888888888888888886643 123444457788888888888888888888876322
Q ss_pred -----CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 008454 435 -----VPNAS-TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDS 508 (565)
Q Consensus 435 -----~p~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 508 (565)
.||-. .+..++..+...|++.+|++.++++.... +-|......+...+...|.+.+|.+.++.+... -+-+.
T Consensus 407 ~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~ 484 (822)
T PRK14574 407 PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL-APRSL 484 (822)
T ss_pred CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccH
Confidence 12222 34455677778888888888888887764 667888888888888888888888888666554 23345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 509 IILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 509 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
.+....+..+...|++++|..+.+.+.+.
T Consensus 485 ~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 485 ILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 56677777888888888888888777544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-18 Score=164.58 Aligned_cols=411 Identities=14% Similarity=0.112 Sum_probs=325.3
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHH
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLV 195 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (565)
..+|++.|.+....+-..++- +.+..-.+..++....+.+....--....+. .+--..+
T Consensus 60 q~gd~~~a~~h~nmv~~~d~t--~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-------------------~~q~ae~ 118 (966)
T KOG4626|consen 60 QGGDYKQAEKHCNMVGQEDPT--NTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-------------------NPQGAEA 118 (966)
T ss_pred hccCHHHHHHHHhHhhccCCC--cccceeeehhhhhcccchhhhhhhhhhhhhc-------------------cchHHHH
Confidence 445888888887777666542 3333334444444444444433322222222 3335678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLN-MVMHAFC 274 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~ 274 (565)
|..+...+-..|++++|+..++.+.+.... .+..|..+..++...|+.+.|.+.|.+.++. .|+..... .+...+-
T Consensus 119 ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 119 YSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHH
Confidence 999999999999999999999999997644 6899999999999999999999999998875 46555443 3444455
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 275 KLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANR 354 (565)
Q Consensus 275 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 354 (565)
..|++++|...|.+.++.... -...|..|...+-.+|+...|+..|++..+... --..+|-.|.+.|...+.+++|..
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred hhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHhcchHHHH
Confidence 689999999999988875322 356788899999999999999999999988632 236789999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 355 IFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSL 434 (565)
Q Consensus 355 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 434 (565)
.+.+..... +.....+..+...|...|.++.|+..|++.++.... =...|+.|..++-..|++.+|.+.+........
T Consensus 274 ~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 274 CYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred HHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 998887653 345577888888899999999999999999986432 367899999999999999999999999988644
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHH
Q 008454 435 VPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPN-KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDS-IILS 512 (565)
Q Consensus 435 ~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~ 512 (565)
. .....+.|...|...|.+++|..+|....+- .|. ....+.|...|-+.|++++|...+++.++ +.|+. ..|+
T Consensus 352 ~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~ 426 (966)
T KOG4626|consen 352 N-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALS 426 (966)
T ss_pred c-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHH
Confidence 3 5668899999999999999999999999875 444 46788999999999999999999999988 56765 5899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHhhcccCCCccC
Q 008454 513 ELYSGLHHCGKDELAMKLFRKMEIRGLLPK-GFDKLRTINCAPENGEKES 561 (565)
Q Consensus 513 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~ 561 (565)
.+...|-..|+.+.|.+.+.+.+.. .|. ....+.+...+..+|..+.
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHH
Confidence 9999999999999999999988654 455 3466777777777777654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-17 Score=174.41 Aligned_cols=413 Identities=11% Similarity=-0.002 Sum_probs=311.8
Q ss_pred cCCChHHHHHH--HHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHH
Q 008454 102 THLTPFRVKHV--LLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLF 179 (565)
Q Consensus 102 ~~l~~~~~~~~--l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~ 179 (565)
..+++..|..- +....++...|++.+..+.... +.....+..+..++...|++++|..++++.++.
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~---------- 78 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL---------- 78 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------
Confidence 35666666543 3466789999999998887633 346667899999999999999999999999887
Q ss_pred HHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 008454 180 DSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRI 259 (565)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~ 259 (565)
.|.++..+..++..+...|++++|+..++++.+.... +.. +..+..++...|+.++|+..++++.+...
T Consensus 79 ---------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P 147 (765)
T PRK10049 79 ---------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAP 147 (765)
T ss_pred ---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 4567778888999999999999999999999887543 566 88899999999999999999999988643
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH-----hcCCh---hHHHHHHHHHH
Q 008454 260 SPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSV------TTYNTLISGHC-----NKGLL---SLAMKFKNLME 325 (565)
Q Consensus 260 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~m~ 325 (565)
.+...+..+...+...|..++|++.++.... .|+. .....++.... ..+++ ++|+..++.+.
T Consensus 148 -~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 148 -QTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred -CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 3566667778888889999999999987664 2221 11122222222 12234 77888888887
Q ss_pred HC-CCCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008454 326 KN-GIQPNVI-TF----NTLIFGFCKKGKLHEANRIFSEMKATNVS-PNVVTYNTLINGYGQVGNSEMGASLYEEMLRNG 398 (565)
Q Consensus 326 ~~-g~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 398 (565)
+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|..+|+++.+..
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~ 302 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP 302 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC
Confidence 54 1223221 11 11134556779999999999999887522 322 22335778999999999999999988754
Q ss_pred CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 399 IKV---DILTYNALILGLCKEGKTKKAAYLVKDLDKNSL-----------VPN---ASTYSALITGQCVRKNSERAFQLY 461 (565)
Q Consensus 399 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~~~~~~A~~~~ 461 (565)
... .......+..++...|++++|..+++.+.+... .|+ ...+..+...+...|++++|++++
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 221 135566777788999999999999999987532 123 234566778888999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008454 462 KSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLP 541 (565)
Q Consensus 462 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 541 (565)
++++... +-+...+..+...+...|++++|++.++++++.. +.+...+..++..+...|++++|..+++++.+. .|
T Consensus 383 ~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~P 458 (765)
T PRK10049 383 RELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EP 458 (765)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CC
Confidence 9999874 6667888999999999999999999999998863 334567777777899999999999999999875 45
Q ss_pred CHhhH
Q 008454 542 KGFDK 546 (565)
Q Consensus 542 ~~~~~ 546 (565)
+....
T Consensus 459 d~~~~ 463 (765)
T PRK10049 459 QDPGV 463 (765)
T ss_pred CCHHH
Confidence 54433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-16 Score=170.01 Aligned_cols=396 Identities=13% Similarity=0.038 Sum_probs=296.0
Q ss_pred CCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 008454 137 SLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTF 216 (565)
Q Consensus 137 ~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 216 (565)
+.+..-..-.+.+....|+.++|.+++.++... .+.....+..+...+...|++++|.++|
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-------------------~~~~a~~~~~lA~~~~~~g~~~~A~~~~ 72 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVH-------------------MQLPARGYAAVAVAYRNLKQWQNSLTLW 72 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455666677788889999999999999988763 2345667889999999999999999999
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008454 217 CQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIP 296 (565)
Q Consensus 217 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 296 (565)
++..+.... +...+..+...+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+....
T Consensus 73 ~~al~~~P~-~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~- 148 (765)
T PRK10049 73 QKALSLEPQ-NDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ- 148 (765)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 999886533 57778889999999999999999999998763 33556 888888999999999999999999987544
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHhC
Q 008454 297 SVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNV------ITFNTLIFGFC-----KKGKL---HEANRIFSEMKAT 362 (565)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~ 362 (565)
+...+..+...+...|..+.|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+.
T Consensus 149 ~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 149 TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 566667788888899999999998886654 2221 11122222222 22334 7788888888854
Q ss_pred -CCCCCHH-HHH----HHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 363 -NVSPNVV-TYN----TLINGYGQVGNSEMGASLYEEMLRNGIK-VDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLV 435 (565)
Q Consensus 363 -~~~~~~~-~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (565)
...|+.. .+. ..+..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|...|+++.+....
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 1223221 111 1134456779999999999999987643 332 2333577899999999999999998765422
Q ss_pred C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 436 P---NASTYSALITGQCVRKNSERAFQLYKSMIRSG-----------CRPN---KHIFEMLMSTFCQNEDFDRAAEVLLE 498 (565)
Q Consensus 436 p---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (565)
. ....+..+..++...|++++|.++++.+.+.. -.|+ ...+..+...+...|+.++|++++++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 13456677778899999999999999998752 0123 23456677788999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHhhcccCCCccCC
Q 008454 499 MLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKG-FDKLRTINCAPENGEKESG 562 (565)
Q Consensus 499 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~~ 562 (565)
+... .+.+...+..+...+...|++++|++.+++..+.. |+. ..+......+...|+.+.+
T Consensus 385 al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A 446 (765)
T PRK10049 385 LAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQM 446 (765)
T ss_pred HHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHH
Confidence 9886 34467889999999999999999999999997764 653 4444455566666666543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-14 Score=155.72 Aligned_cols=177 Identities=11% Similarity=0.035 Sum_probs=107.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 378 YGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERA 457 (565)
Q Consensus 378 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A 457 (565)
+...|++++|...|+++... .|+...+..+...+.+.|+.++|...++...+.+.. +...+..+.......|++++|
T Consensus 519 l~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHH
Confidence 34556666666666655443 223333445555566666666666666666554321 222222233333344777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 458 FQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 458 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
...+++.++. .|+...+..+..++.+.|++++|...+++.++.. +.+...++.+...+...|+.++|+..+++..+.
T Consensus 596 l~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 596 LNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7777777765 4566777777777777777777777777777753 224556677777777777888887777777654
Q ss_pred CCCCCHhhHHHHHhhcccCCCccC
Q 008454 538 GLLPKGFDKLRTINCAPENGEKES 561 (565)
Q Consensus 538 g~~p~~~~~~~ll~~~~~~g~~~~ 561 (565)
. +-+...+..+..++...|+.+.
T Consensus 673 ~-P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 673 L-PDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3 1234556666667777776654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.6e-14 Score=148.05 Aligned_cols=394 Identities=12% Similarity=0.018 Sum_probs=290.3
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 141 ETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSS-PLVFDLLFKTYAHRKKFRNATDTFCQM 219 (565)
Q Consensus 141 ~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 219 (565)
.+....+-+..+.|+++.|.+.|+++++.. +.+ +.++ .++..+...|+.++|+..+++.
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-------------------P~~~~av~-dll~l~~~~G~~~~A~~~~eka 94 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAG-------------------PLQSGQVD-DWLQIAGWAGRDQEVIDVYERY 94 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-------------------ccchhhHH-HHHHHHHHcCCcHHHHHHHHHh
Confidence 344444556779999999999999999873 333 2344 7888888999999999999999
Q ss_pred HHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008454 220 RDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVT 299 (565)
Q Consensus 220 ~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 299 (565)
.... .........+...+...|++++|+++|+++.+.... +...+..++..+...++.++|++.++++... .|+..
T Consensus 95 ~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~ 170 (822)
T PRK14574 95 QSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQ 170 (822)
T ss_pred ccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchH
Confidence 8321 113444444467888999999999999999987533 5677778888999999999999999999876 45666
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-----------------------
Q 008454 300 TYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIF----------------------- 356 (565)
Q Consensus 300 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----------------------- 356 (565)
.+..++..+...++..+|++.++++.+... -+...+..++.++.+.|-...|.++.
T Consensus 171 ~~l~layL~~~~~~~~~AL~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~ 249 (822)
T PRK14574 171 NYMTLSYLNRATDRNYDALQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQ 249 (822)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHH
Confidence 665555555556777679999999998742 25555555555555555443333332
Q ss_pred -------------------------HHHHhC-CCCCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 008454 357 -------------------------SEMKAT-NVSPNV-VTY----NTLINGYGQVGNSEMGASLYEEMLRNGIKVDILT 405 (565)
Q Consensus 357 -------------------------~~m~~~-~~~~~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 405 (565)
+.+... +..|.. ..| .-.+-++...|++.++++.|+.+...+......+
T Consensus 250 vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 250 VRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred HhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 222221 111221 122 2335567788999999999999999887767789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSL-----VPNASTYSALITGQCVRKNSERAFQLYKSMIRSGC----------- 469 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~----------- 469 (565)
-.++.++|...++.++|..+++.+..... .++......|..++...+++++|..+++++.+...
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 99999999999999999999999866431 22444467899999999999999999999997411
Q ss_pred CCC--H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-Hhh
Q 008454 470 RPN--K-HIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPK-GFD 545 (565)
Q Consensus 470 ~p~--~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~ 545 (565)
.|| - ..+..++..+...|+..+|++.++++... -+-|......+.+.+...|.+.+|.+.++..... .|+ ..+
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~ 486 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLIL 486 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHH
Confidence 122 1 33455677788999999999999999876 4558889999999999999999999999777554 454 445
Q ss_pred HHHHHhhcccCCCccCC
Q 008454 546 KLRTINCAPENGEKESG 562 (565)
Q Consensus 546 ~~~ll~~~~~~g~~~~~ 562 (565)
......++...|+.+.+
T Consensus 487 ~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 487 ERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHHHHHHHhhhhHHHH
Confidence 55566666666766544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-14 Score=147.20 Aligned_cols=448 Identities=14% Similarity=0.074 Sum_probs=280.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCc---------
Q 008454 106 PFRVKHVLLKVQKDYVLSLEFFTWVQTHKPS-SLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLP--------- 175 (565)
Q Consensus 106 ~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~--------- 175 (565)
+..-.+.+..-+++|..|+.+|+.+...+|. .+++ .-.+.+++.+.++.+.|...|..+++...-...
T Consensus 166 ~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~ 243 (1018)
T KOG2002|consen 166 ALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVD 243 (1018)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 3444566778889999999999998887654 3333 345668889999999999999988887531111
Q ss_pred ---------HHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHcCCCh
Q 008454 176 ---------SKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFL--PIIESCNKFLSSLLDSERV 244 (565)
Q Consensus 176 ---------~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~ 244 (565)
...+..+.+.|...+.+|.+.+.|...|.-.|++..+..+...+...... .-.++|..+.+++-..|++
T Consensus 244 l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ 323 (1018)
T KOG2002|consen 244 LNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDF 323 (1018)
T ss_pred HHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccH
Confidence 12223333446778889999999999999999999999999988775422 1346688899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChhHHHHH
Q 008454 245 DIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKG----LLSLAMKF 320 (565)
Q Consensus 245 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~a~~~ 320 (565)
++|...|.+..+....--+..+.-+...+.+.|+++.+...|+.+.+... -+..+...|...|...+ ..+.|..+
T Consensus 324 ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~ 402 (1018)
T KOG2002|consen 324 EKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNV 402 (1018)
T ss_pred HHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHH
Confidence 99999998877653211134456778889999999999999999887532 24555555655565553 34455555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 321 KNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMK----ATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLR 396 (565)
Q Consensus 321 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 396 (565)
+....+.- +.|...|-.+...+....-+.. +.+|.... ..+..+.....|.+...+...|++++|...|+....
T Consensus 403 l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~ 480 (1018)
T KOG2002|consen 403 LGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALG 480 (1018)
T ss_pred HHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh
Confidence 54444432 2345555444444443322222 44333322 223334455555555555555555555555555443
Q ss_pred C---CCCCCH------HH-HH--------------------------HHHHHHHHc-------CCHHHHHHHHHHHHhCC
Q 008454 397 N---GIKVDI------LT-YN--------------------------ALILGLCKE-------GKTKKAAYLVKDLDKNS 433 (565)
Q Consensus 397 ~---~~~~~~------~~-~~--------------------------~li~~~~~~-------g~~~~A~~~~~~~~~~~ 433 (565)
. ...+|. .+ || ..|.+|.+. +...+|...++.+...+
T Consensus 481 ~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 481 KLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred hhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 3 111111 01 11 112222222 33444544444433211
Q ss_pred -CC----------------------------------CCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHH
Q 008454 434 -LV----------------------------------PNASTYSALITGQCV------------RKNSERAFQLYKSMIR 466 (565)
Q Consensus 434 -~~----------------------------------p~~~~~~~li~~~~~------------~~~~~~A~~~~~~m~~ 466 (565)
.. +|..+.-.|.+.|.. .+..++|+++|.+.++
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 11 122222233333321 2346778888888887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhh
Q 008454 467 SGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR-GLLPKGFD 545 (565)
Q Consensus 467 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~ 545 (565)
.. +-|...-+.+...++..|++.+|..+|.+..+... -...+|-.+.++|..+|++-.|.++|+...++ +-.-+...
T Consensus 641 ~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v 718 (1018)
T KOG2002|consen 641 ND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV 718 (1018)
T ss_pred cC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 64 56677777788888888889999999888877632 24567778888888889999999988887655 33345566
Q ss_pred HHHHHhhcccCCCcc
Q 008454 546 KLRTINCAPENGEKE 560 (565)
Q Consensus 546 ~~~ll~~~~~~g~~~ 560 (565)
+..+.++.-+.|...
T Consensus 719 l~~Lara~y~~~~~~ 733 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQ 733 (1018)
T ss_pred HHHHHHHHHHhhhHH
Confidence 666667766666543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-13 Score=127.82 Aligned_cols=413 Identities=13% Similarity=0.149 Sum_probs=279.4
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCch---hHHHHHHHHhhcCCCCC----cHHHHHHHHHhcccCC
Q 008454 118 KDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFK---SSESILRGILDSDSFDL----PSKLFDSILYSYRMCD 190 (565)
Q Consensus 118 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~a~~ll~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 190 (565)
+..+.+.-+++.+...+ .+.+.+.-..++...+..+.-+ .-++.|-.|.+.|.-.. .-.+.+-+ +...|
T Consensus 129 ~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~---~E~~P 204 (625)
T KOG4422|consen 129 REVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLL---FETLP 204 (625)
T ss_pred cccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHH---HhhcC
Confidence 45566666777766533 4556655555555444332221 12333434433332111 01122211 12256
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVM 270 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 270 (565)
.++.++..+|.++|+--..+.|.+++++......+.+..++|.+|.+-.-. ...+++.+|....+.||..|+|.++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 688899999999999999999999999998887778889999888765432 2378888998888999999999999
Q ss_pred HHHHHcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHH----CCCC----CCHHHHH
Q 008454 271 HAFCKLGIIER----AVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSL-AMKFKNLMEK----NGIQ----PNVITFN 337 (565)
Q Consensus 271 ~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~g~~----~~~~~~~ 337 (565)
.+..+.|+++. |.+++.+|++.|++|...+|..+|..+++.++..+ +..++.++.. ..++ .+...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 99999998765 56778888999999999999999999999888755 3334444332 1122 2455667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 338 TLIFGFCKKGKLHEANRIFSEMKATN----VSPN---VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALI 410 (565)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 410 (565)
..|..|.+..+.+-|.++-.-+.... +.++ ..-|..+....|+....+.....|+.|+-.-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 77888888888888888776654321 2233 2335667778888888999999999999887888888888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C--------HHH-----HHHH-------HHHHHHcCC
Q 008454 411 LGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRK-N--------SER-----AFQL-------YKSMIRSGC 469 (565)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-~--------~~~-----A~~~-------~~~m~~~~~ 469 (565)
.+..-.|.++-.-+++.++...|..-+...-..++..+++.+ + +.. |..+ -.+|.+.
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~-- 518 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ-- 518 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--
Confidence 988888998888888888887765444444444444444433 1 111 1111 1122222
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008454 470 RPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCM----APDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLL 540 (565)
Q Consensus 470 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 540 (565)
.......+.+...+.+.|..++|.+++..+.+.+- .|.......+++.-...+....|..+++-|...+..
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 34455667777778899999999999988866542 233334446667777788899999999988776543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.8e-13 Score=144.48 Aligned_cols=217 Identities=14% Similarity=0.063 Sum_probs=167.4
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 313 LLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYE 392 (565)
Q Consensus 313 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 392 (565)
+.++|...+.+.... .|+......+...+...|++++|...++++... +|+...+..+...+.+.|+.++|...++
T Consensus 491 ~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~ 566 (987)
T PRK09782 491 LPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQ 566 (987)
T ss_pred CcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 333444434433332 233333233344456789999999999887654 4555556677788899999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008454 393 EMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPN 472 (565)
Q Consensus 393 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 472 (565)
+..+.+.. +...+..+...+...|++++|...+++..+. .|+...|..+...+.+.|++++|+..+++.++.. +.+
T Consensus 567 qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~ 642 (987)
T PRK09782 567 QAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNN 642 (987)
T ss_pred HHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 99987522 3334444444555669999999999999876 4678889999999999999999999999999875 556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008454 473 KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRG 538 (565)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 538 (565)
...+..+..++...|++++|+..+++.++.. +-+...+..+..++...|++++|...+++..+..
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 7788888889999999999999999999863 3467788999999999999999999999997653
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-13 Score=125.62 Aligned_cols=367 Identities=14% Similarity=0.154 Sum_probs=270.6
Q ss_pred CCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 138 LTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFC 217 (565)
Q Consensus 138 ~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (565)
-+.++|..+|..+++--..+.|.+++++..... ..-+..+||.+|.+-.- ....++..
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k------------------~kv~~~aFN~lI~~~S~----~~~K~Lv~ 262 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAK------------------GKVYREAFNGLIGASSY----SVGKKLVA 262 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh------------------heeeHHhhhhhhhHHHh----hccHHHHH
Confidence 477899999999999999999999999887652 22356778888876543 33378899
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHh-
Q 008454 218 QMRDYGFLPIIESCNKFLSSLLDSERVDI----ALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIER-AVEVFKNMES- 291 (565)
Q Consensus 218 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~----A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~- 291 (565)
+|......||..++|+++++..+.|+++. |++++.+|++.|+.|...+|..+|..+++.++..+ +..++.++..
T Consensus 263 EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 263 EMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred HHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 99999999999999999999999998765 67888999999999999999999999999988754 4444444443
Q ss_pred ---CCCC---C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008454 292 ---MGFI---P-SVTTYNTLISGHCNKGLLSLAMKFKNLMEKNG----IQPN---VITFNTLIFGFCKKGKLHEANRIFS 357 (565)
Q Consensus 292 ---~g~~---p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~ 357 (565)
..++ | |...|...+..|.+..+.+.|.++...+.... +.|+ ..-|..+....|.....+..+..|+
T Consensus 343 ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 343 LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2 45567778899999999999999877665431 2233 2346677888899999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-C--------HH-----HHH
Q 008454 358 EMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEG-K--------TK-----KAA 423 (565)
Q Consensus 358 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~--------~~-----~A~ 423 (565)
.|.-.-+-|+..+...++++....|.++-.-+++.+++..|..........++..+++.. . +. -|.
T Consensus 423 ~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 423 DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 999887889999999999999999999999999999998876655555555555565544 1 11 112
Q ss_pred HHHH-------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 424 YLVK-------DLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSG----CRPNKHIFEMLMSTFCQNEDFDRA 492 (565)
Q Consensus 424 ~~~~-------~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~~~~A 492 (565)
.+++ ++.+. .......+.+.-.+.+.|+.++|.+++..+.+++ ..|......-+++.-.+.++...|
T Consensus 503 d~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA 580 (625)
T KOG4422|consen 503 DIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA 580 (625)
T ss_pred HHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH
Confidence 2222 22222 2345567777778889999999999999997654 234445555777777888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 493 AEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAM 528 (565)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 528 (565)
..+++-|...+...-...-+-+...|.-...-.+|+
T Consensus 581 ~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~l 616 (625)
T KOG4422|consen 581 IEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEAL 616 (625)
T ss_pred HHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHH
Confidence 999999977654432323444444444333333333
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-14 Score=135.36 Aligned_cols=419 Identities=13% Similarity=0.074 Sum_probs=271.4
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHH
Q 008454 120 YVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLL 199 (565)
Q Consensus 120 ~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (565)
+..|+..++-+.+++-|+.....--.+.+++.+.+.|..|..+++-.+..- ..... .....+.+.+
T Consensus 217 ~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqv-psink-------------~~rikil~ni 282 (840)
T KOG2003|consen 217 TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQV-PSINK-------------DMRIKILNNI 282 (840)
T ss_pred HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhc-cccch-------------hhHHHHHhhc
Confidence 346666666666666555443333445666677777888887777666551 00000 0012345556
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC------------CCHHHHH
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRIS------------PNVYTLN 267 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~------------p~~~~~~ 267 (565)
.-.+.+.|++++|+..|+...+.. |+..+-..|+-++..-|+.++..+.|..|+..-.. |+....+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 667788888999998888887755 66655445555555678888888888888653221 2222222
Q ss_pred H-----HHHHHHHcCC--HHHHHHHHHHHHhCCCCCCHH-------------HH--------HHHHHHHHhcCChhHHHH
Q 008454 268 M-----VMHAFCKLGI--IERAVEVFKNMESMGFIPSVT-------------TY--------NTLISGHCNKGLLSLAMK 319 (565)
Q Consensus 268 ~-----li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~-------------~~--------~~li~~~~~~g~~~~a~~ 319 (565)
. .++.+-+.++ .++++-.-.+++.--+.|+-. .+ ..-...+.+.|+++.|.+
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 2 2222222221 122221111221111111100 00 111245777788888877
Q ss_pred HHHHHHHCCCCCCHHHHHH------------------------------------HHHHHHHcCCHHHHHHHHHHHHhCC
Q 008454 320 FKNLMEKNGIQPNVITFNT------------------------------------LIFGFCKKGKLHEANRIFSEMKATN 363 (565)
Q Consensus 320 ~~~~m~~~g~~~~~~~~~~------------------------------------li~~~~~~g~~~~A~~~~~~m~~~~ 363 (565)
++.-+.+..-+.-...-+. -.+....+|++++|.+.+++.....
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 7776654422111111111 1112234678889998888887654
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008454 364 VSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSA 443 (565)
Q Consensus 364 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 443 (565)
-.-....|+ +.-.+-..|+.++|++.|-++... ..-+..+...+...|-...+..+|++++-+.... +.-|+.....
T Consensus 521 asc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilsk 597 (840)
T KOG2003|consen 521 ASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSK 597 (840)
T ss_pred hHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHH
Confidence 222233333 334456788999999988877654 2236778888888999999999999998877654 3337788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcC
Q 008454 444 LITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGL-HHCG 522 (565)
Q Consensus 444 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g 522 (565)
|...|-+.|+-..|++.+-+--+. ++-+..+...|..-|....-+++++.+|++..- +.|+..-|..++..| .+.|
T Consensus 598 l~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcc
Confidence 999999999999999887766554 577889999999999999999999999998754 689999999888655 5689
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHhhcccCCCccC
Q 008454 523 KDELAMKLFRKMEIRGLLPKGFDKLRTINCAPENGEKES 561 (565)
Q Consensus 523 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 561 (565)
+++.|+++|+.... .+.-|..++.-+++.|...|.++-
T Consensus 675 nyqka~d~yk~~hr-kfpedldclkflvri~~dlgl~d~ 712 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGLKDA 712 (840)
T ss_pred cHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccchhH
Confidence 99999999999864 467788899999999999998764
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.2e-13 Score=134.54 Aligned_cols=435 Identities=16% Similarity=0.100 Sum_probs=287.3
Q ss_pred ChHHHHHHH--HhhcCChHHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCC----------
Q 008454 105 TPFRVKHVL--LKVQKDYVLSLEFFTWVQTHKPSS-LTLETHSIVLHILTKNRKFKSSESILRGILDSDS---------- 171 (565)
Q Consensus 105 ~~~~~~~~l--~~~~~~~~~al~~f~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~---------- 171 (565)
+|....++. ....++|..+..+..-+....-.. .-.+.|..+...+...|+++.|...+.+..+...
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 344444333 467889999999988887754222 2357899999999999999999999988876531
Q ss_pred ---------CCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008454 172 ---------FDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRK----KFRNATDTFCQMRDYGFLPIIESCNKFLSSL 238 (565)
Q Consensus 172 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~ 238 (565)
...+...|+.++.. .+.+..+...|...|+..+ ..+.|..++.+..+..+. |...|-.+...+
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~---~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-d~~a~l~laql~ 424 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQ---LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-DSEAWLELAQLL 424 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHh---CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHH
Confidence 11123333333332 3445555555555555553 445555555555554422 566666665555
Q ss_pred HcCCChHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHH
Q 008454 239 LDSERVDIALGFYKEMR----RNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM---GFIPSV------TTYNTLI 305 (565)
Q Consensus 239 ~~~~~~~~A~~~~~~m~----~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~------~~~~~li 305 (565)
...+-+ .++.+|.... ..+-.+.....|.+.......|++++|...|+..... ...++. .+--.+.
T Consensus 425 e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 443333 2355554432 3344456666777777777777777777777666543 111222 1222244
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008454 306 SGHCNKGLLSLAMKFKNLMEKNGIQPN-VITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNS 384 (565)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 384 (565)
..+-..++++.|.+.+..+.+. .|+ +..|.-+....-..+...+|...+....... ..++..+..+...+.+...+
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhh
Confidence 4455556777777777777665 222 2333333333333466777888877776643 45566666677777777788
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008454 385 EMGASLYEEMLRN-GIKVDILTYNALILGLCK------------EGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVR 451 (565)
Q Consensus 385 ~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 451 (565)
..|.+-|....+. ...+|..+.-+|.+.|.+ .+..++|+.+|.++.+.... |...-|.+.-.++..
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEK 659 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhc
Confidence 8888766666554 223577777777776653 24578899999999887655 777888888899999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008454 452 KNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK-CMAPDSIILSELYSGLHHCGKDELAMKL 530 (565)
Q Consensus 452 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~ 530 (565)
|++.+|..+|.+..+.. .-...+|-.+.++|...|++..|++.|+...+. .-..+..+.+.|.+++.+.|++.+|.+.
T Consensus 660 g~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred cCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999875 345577888999999999999999999888665 3455778899999999999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHH
Q 008454 531 FRKMEIRGLLPKGFDKLRT 549 (565)
Q Consensus 531 ~~~m~~~g~~p~~~~~~~l 549 (565)
..........-....++..
T Consensus 739 ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 739 LLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHhCCccchHHhHHH
Confidence 8887666544344444443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-12 Score=131.16 Aligned_cols=373 Identities=16% Similarity=0.115 Sum_probs=291.0
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008454 141 ETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMR 220 (565)
Q Consensus 141 ~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 220 (565)
...-..++.+...|++++|..++.++++. .+..+..|..|...|-..|+.+++...+-.+-
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkq-------------------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA 200 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQ-------------------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA 200 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------------------CccchhhHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33444566666779999999999999998 56688899999999999999999999887777
Q ss_pred HCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008454 221 DYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTT 300 (565)
Q Consensus 221 ~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 300 (565)
..+.. |...|..+.....+.|+++.|.-.|.+.++.. +++...+---+..|-+.|+...|.+-|.++.......|..-
T Consensus 201 HL~p~-d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 201 HLNPK-DYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred hcCCC-ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 66654 77999999999999999999999999998875 34666666667788899999999999999998754333333
Q ss_pred HHH----HHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------------
Q 008454 301 YNT----LISGHCNKGLLSLAMKFKNLMEKN-GIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATN------------ 363 (565)
Q Consensus 301 ~~~----li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------ 363 (565)
+.. +++.+...++.+.|.+.++..... +-..+...++.++..+.+...++.|......+....
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 333 455666777779999988877662 223466778899999999999999999988887621
Q ss_pred ---------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008454 364 ---------------VSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNG--IKVDILTYNALILGLCKEGKTKKAAYLV 426 (565)
Q Consensus 364 ---------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 426 (565)
+.++... -.++-++......+....+........ +.-+...|.-+..+|...|++.+|+.+|
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l 437 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLL 437 (895)
T ss_pred hccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 1122222 123334455556666666666666665 4446778999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----
Q 008454 427 KDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLE----- 501 (565)
Q Consensus 427 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 501 (565)
..+......-+...|-.+.++|...|.++.|.+.|...+... +-+...--.|...+.+.|+.++|.+.+..+..
T Consensus 438 ~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 438 SPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 999987666678899999999999999999999999999863 44556667777888999999999999988642
Q ss_pred ---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 502 ---KCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 502 ---~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 536 (565)
.+..|+........+.+...|+.++-...-.+|..
T Consensus 517 ~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 517 AEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 23556667777778889999999987776666654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-12 Score=127.05 Aligned_cols=282 Identities=12% Similarity=0.048 Sum_probs=166.9
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChhHH
Q 008454 241 SERVDIALGFYKEMRRNRISPNVYT-LNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYN--TLISGHCNKGLLSLA 317 (565)
Q Consensus 241 ~~~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a 317 (565)
.|+++.|.+.+....+.. ++... |........+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666665555543321 11222 222233335666666666666666553 23332221 234566666777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChHHHHHH
Q 008454 318 MKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNV-------VTYNTLINGYGQVGNSEMGASL 390 (565)
Q Consensus 318 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~ 390 (565)
...++++.+... -+......+...|.+.|++++|.+++..+.+.+...+. ..|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 777776666542 25556666666677777777777777776665433211 1222223333333444555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008454 391 YEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCR 470 (565)
Q Consensus 391 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 470 (565)
++.+.+. .+.+......+...+...|+.++|.+++++..+. .|+... .++.+.+..++.+++++..+...+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 5554332 2336667777777777778877777777777663 333321 12333445577777777777777653 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 471 PNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 471 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
-|...+..+...+.+.|++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++-.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45556677777777888888888888777764 5777777777778888888888877777654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.5e-12 Score=127.52 Aligned_cols=262 Identities=13% Similarity=-0.018 Sum_probs=114.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
....++.+.|+++.|.+.+.+..+....+.....-.....+...|+++.|...++.+.+.. +-+...+..+...+...|
T Consensus 123 laA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~ 201 (409)
T TIGR00540 123 KAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSG 201 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHh
Confidence 3345555566666666666665543322222233333555555666666666666665553 224455556666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HhcCChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCCHH
Q 008454 278 IIERAVEVFKNMESMGFIPSVTTYN-TLISGH---CNKGLLSLAMKFKNLMEKNGI---QPNVITFNTLIFGFCKKGKLH 350 (565)
Q Consensus 278 ~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~---~~~g~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~ 350 (565)
++++|.+.+..+.+.+.. +...+. .-..++ ...+..++..+.+..+.+... +.+...+..+...+...|+.+
T Consensus 202 d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~ 280 (409)
T TIGR00540 202 AWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHD 280 (409)
T ss_pred hHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChH
Confidence 666666666666655433 222221 111111 111222222223332222211 114455555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHH
Q 008454 351 EANRIFSEMKATNVSPNVVT---YNTLINGYGQVGNSEMGASLYEEMLRNGIKVDI--LTYNALILGLCKEGKTKKAAYL 425 (565)
Q Consensus 351 ~A~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~ 425 (565)
+|.+++++..+.. ||... ...........++.+.+.+.++...+.... |. .....+...+.+.|++++|.+.
T Consensus 281 ~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~ 357 (409)
T TIGR00540 281 SAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADA 357 (409)
T ss_pred HHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHH
Confidence 5555555555542 22211 011111112223444444444444433111 22 3333444444444455555444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 426 VKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSM 464 (565)
Q Consensus 426 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 464 (565)
|+........|+...+..+...+.+.|+.++|.++|++.
T Consensus 358 le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 358 FKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 443222222344444444444444444444444444443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=4e-12 Score=127.12 Aligned_cols=291 Identities=12% Similarity=-0.003 Sum_probs=183.3
Q ss_pred cCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 008454 240 DSERVDIALGFYKEMRRNRISPN-VYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAM 318 (565)
Q Consensus 240 ~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 318 (565)
..|+++.|.+.+....+.. |+ ...+-.........|+.+.|.+.+.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4577777777776665542 33 22333445556667777777777777665432222223333466677777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HhcCChHHHHHHHHHH
Q 008454 319 KFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYN-TLINGY---GQVGNSEMGASLYEEM 394 (565)
Q Consensus 319 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~---~~~g~~~~A~~~~~~m 394 (565)
..++.+.+... -+...+..+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777777642 25566777777777778888777777777776533 322221 111111 2222333333444444
Q ss_pred HHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008454 395 LRNGI---KVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNAST-YSALITGQCVRKNSERAFQLYKSMIRSGCR 470 (565)
Q Consensus 395 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 470 (565)
.+... +.+...+..++..+...|+.++|.+++++..+......... ...........++.+.+.+.++...+.. +
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p 330 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-D 330 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-C
Confidence 44322 13677778888888888888888888888877543221111 1112222334577788888888877652 3
Q ss_pred CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 471 PNK--HIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 471 p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
-|. .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++-.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344 55667888888899999999998854444456888888888889999999999998888753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.4e-12 Score=125.46 Aligned_cols=285 Identities=9% Similarity=0.000 Sum_probs=221.0
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHH
Q 008454 206 RKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLN--MVMHAFCKLGIIERAV 283 (565)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~ 283 (565)
.|++++|.+.+....+..-.| ...|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 599999998888876643221 222333345557899999999999999875 45543332 3366888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHH
Q 008454 284 EVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNV-------ITFNTLIFGFCKKGKLHEANRIF 356 (565)
Q Consensus 284 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~ 356 (565)
+.++++.+.... +...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999987644 6788888999999999999999999999988755322 13333444444455666677777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008454 357 SEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVP 436 (565)
Q Consensus 357 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 436 (565)
+.+.+. .+.+......+...+...|+.++|.+++++..+. .++.... ++.+.+..++.+++.+..+...+....
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~- 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD- 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC-
Confidence 766443 2457788889999999999999999999999885 3444222 344445669999999999999887554
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 437 NASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 437 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
|...+..+.+.+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++....
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6777889999999999999999999999986 699999999999999999999999999987653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-11 Score=123.73 Aligned_cols=365 Identities=12% Similarity=0.031 Sum_probs=272.6
Q ss_pred HHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCC
Q 008454 111 HVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCD 190 (565)
Q Consensus 111 ~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (565)
+..+..+|+...|.+++..++++.| -....|..+..++-..|+.+.+....-.+... .+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-------------------~p 204 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-------------------NP 204 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-------------------CC
Confidence 4456778999999999999999876 56788999999999999999887766555444 45
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH----HH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVY----TL 266 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~ 266 (565)
.+...|-.+.....+.|.+++|.-.|.+..+.... +...+-.-...|-+.|+...|.+-|.++.....+.|.. ..
T Consensus 205 ~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i 283 (895)
T KOG2076|consen 205 KDYELWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLI 283 (895)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHH
Confidence 67789999999999999999999999999998754 56666667788899999999999999998864332322 23
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--------------
Q 008454 267 NMVMHAFCKLGIIERAVEVFKNMESM-GFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQP-------------- 331 (565)
Q Consensus 267 ~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-------------- 331 (565)
..+++.+...++.+.|.+.++..... +-..+...++.++..+.+...++.+......+......+
T Consensus 284 ~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~ 363 (895)
T KOG2076|consen 284 RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREE 363 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccc
Confidence 45567778888889999999887763 223466778889999999999999998888877622222
Q ss_pred -------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 332 -------------NVITFNTLIFGFCKKGKLHEANRIFSEMKATN--VSPNVVTYNTLINGYGQVGNSEMGASLYEEMLR 396 (565)
Q Consensus 332 -------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 396 (565)
+..++ -++-++......+....+...+.+.. ..-+...|.-+..++...|++..|..+|..+..
T Consensus 364 ~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 364 PNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred ccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 22221 22233334444444444444455544 344567788899999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------cC
Q 008454 397 NGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIR--------SG 468 (565)
Q Consensus 397 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--------~~ 468 (565)
....-+..+|..+..+|...|.+++|...|+.+...... +...--.|...+-+.|+.++|.+.+..+.. .+
T Consensus 443 ~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a 521 (895)
T KOG2076|consen 443 REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACA 521 (895)
T ss_pred CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcc
Confidence 866557889999999999999999999999999876432 444556677778889999999999988642 23
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 469 CRPNKHIFEMLMSTFCQNEDFDRAAEVLLEM 499 (565)
Q Consensus 469 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 499 (565)
..|+..........+.+.|+.++-......|
T Consensus 522 ~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 522 WEPERRILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4455555555666677777776654443333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.8e-11 Score=112.56 Aligned_cols=309 Identities=12% Similarity=0.028 Sum_probs=204.7
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCC
Q 008454 236 SSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFI--PSVTTYNTLISGHCNKGL 313 (565)
Q Consensus 236 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~ 313 (565)
.++-...+.+++..-.+.....|.+-+...-+....+.-...|+++|+.+|+++.+...- -|..+|..++-+ +...
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhhh
Confidence 444444566666666666666666555544444445555667777788888777766211 155666655533 2221
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 314 LSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEE 393 (565)
Q Consensus 314 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 393 (565)
..+.++.+-...--+--+.|+..+.+-|.-.++.++|...|+...+.+ +-....|+.+..-|....+...|.+-++.
T Consensus 313 --skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 --SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred --HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 111222211111012234566667777778888888888888888765 44556778888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 008454 394 MLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNK 473 (565)
Q Consensus 394 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 473 (565)
.++-... |-..|..|.++|.-.+...-|+-.|++..+.... |...|.+|..+|.+.++.++|++.|+.....| ..+.
T Consensus 390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~ 466 (559)
T KOG1155|consen 390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEG 466 (559)
T ss_pred HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccch
Confidence 8886443 7788888888888888888888888888775443 77788888888888888888888888888766 4566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 008454 474 HIFEMLMSTFCQNEDFDRAAEVLLEMLEK----CMAPD--SIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKL 547 (565)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 547 (565)
..+..|...+-+.++..+|.+.+++-++. |...+ ....--|..-+.+.+++++|-......... .+.-..-.
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak 544 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAK 544 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHH
Confidence 78888888888888888888888776552 22222 223333556677788888887765555432 44555555
Q ss_pred HHHhhcc
Q 008454 548 RTINCAP 554 (565)
Q Consensus 548 ~ll~~~~ 554 (565)
.+++.+.
T Consensus 545 ~LlReir 551 (559)
T KOG1155|consen 545 ALLREIR 551 (559)
T ss_pred HHHHHHH
Confidence 5555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-11 Score=111.09 Aligned_cols=291 Identities=14% Similarity=0.093 Sum_probs=190.3
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHH
Q 008454 241 SERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPS---VTTYNTLISGHCNKGLLSLA 317 (565)
Q Consensus 241 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a 317 (565)
.++.++|.++|-+|.+.. +-+..+.-.|.+.|.+.|.++.|+++.+.+.++.--+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 356777777777776542 22344555666777777777777777777766411111 22333455667777888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 318 MKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNV----VTYNTLINGYGQVGNSEMGASLYEE 393 (565)
Q Consensus 318 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~ 393 (565)
+.+|..+.+.|.- -..+...|+..|-...+|++|+++-+++.+.+-.+.. ..|.-+...+....+.+.|..++++
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8888877775422 3456667778888888888888888877765433322 2233444455556778888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 008454 394 MLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNK 473 (565)
Q Consensus 394 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 473 (565)
..+.+.+ .+..--.+.+.+...|++++|.+.++.+.+.+..--..+...|..+|...|+.++....+..+.+.. +..
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 8776443 4555556777778888888888888888877554445567778888888888888888888888763 333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCC
Q 008454 474 HIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHH---CGKDELAMKLFRKMEIRG 538 (565)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g 538 (565)
..-..+........-.+.|..++.+-+.+ +|+...+..|++.-.. .|...+-+.+++.|....
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 33444444444445566666666555553 5888888888876643 455677777777776553
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.7e-15 Score=139.01 Aligned_cols=221 Identities=15% Similarity=0.122 Sum_probs=59.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 008454 306 SGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSE 385 (565)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 385 (565)
..+...++++.|.+.++++...+.. +...+..++.. ...+++++|.++++...+. .++...+..++..+.+.++++
T Consensus 52 ~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~ 127 (280)
T PF13429_consen 52 DLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYD 127 (280)
T ss_dssp ----------------------------------------------------------------------H-HHHTT-HH
T ss_pred ccccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHH
Confidence 3333444444444444444443221 23333333333 3444444444444443332 123333444444444444444
Q ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 386 MGASLYEEMLRNG-IKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSM 464 (565)
Q Consensus 386 ~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 464 (565)
++..+++.+.... ...+...|..+...+.+.|+.++|...+++..+.... |....+.++..+...|+.+++.++++..
T Consensus 128 ~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~ 206 (280)
T PF13429_consen 128 EAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRL 206 (280)
T ss_dssp HHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 4444444443321 1223444444444444555555555555544443221 3344444444444455554444444444
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 465 IRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRK 533 (565)
Q Consensus 465 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 533 (565)
.+.. +.|...+..+..++...|+.++|..++++..+. .+.|..+...+.+++...|+.++|.++.++
T Consensus 207 ~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 207 LKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT--------------
T ss_pred HHHC-cCHHHHHHHHHHHhccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 4332 233334444444555555555555555554443 122444444455555555555555544443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=137.85 Aligned_cols=262 Identities=16% Similarity=0.150 Sum_probs=113.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008454 233 KFLSSLLDSERVDIALGFYKEMRRNR-ISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNK 311 (565)
Q Consensus 233 ~ll~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 311 (565)
.+...+.+.|++++|+++++...... .+.|...|..+.......++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 56888899999999999996654443 2335555666666777889999999999999987644 56667777777 789
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008454 312 GLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATN-VSPNVVTYNTLINGYGQVGNSEMGASL 390 (565)
Q Consensus 312 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~ 390 (565)
+++++|.++++...+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999988776543 466778888899999999999999999987542 345777888889999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008454 391 YEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCR 470 (565)
Q Consensus 391 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 470 (565)
+++..+.... |......++..+...|+.+++..+++...+.. ..|...+..+..++...|+.++|+..|++..... +
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 9999987443 67888899999999999999988888887653 2355678899999999999999999999999864 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 471 PNKHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 471 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
.|......+..++...|+.++|.++.+++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 6888899999999999999999999887754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-09 Score=102.19 Aligned_cols=392 Identities=13% Similarity=0.072 Sum_probs=251.2
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHH
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLV 195 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (565)
-++++..|.++|+.++.... .+...+...+..=-++++...|+.+++..+.. .+... ..
T Consensus 85 sq~e~~RARSv~ERALdvd~--r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVd-----------------ql 143 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY--RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVD-----------------QL 143 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHH-----------------HH
Confidence 45688899999999988653 35556888888888999999999999888775 12222 22
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK 275 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 275 (565)
|...+..=-..|++..|.++|++-.+ ..|+..+|++.+..=.+.+..+.|..+|+...-. .|++.+|--..+.=.+
T Consensus 144 WyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k 219 (677)
T KOG1915|consen 144 WYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEK 219 (677)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHh
Confidence 33333333334555555555555554 2355555655555555555555555555555432 3555555555554455
Q ss_pred cCCHHHHHHHHHHHHhC-C-----------------------------------CCCC--HHHHHHHHHHHHhcCChhHH
Q 008454 276 LGIIERAVEVFKNMESM-G-----------------------------------FIPS--VTTYNTLISGHCNKGLLSLA 317 (565)
Q Consensus 276 ~g~~~~a~~~~~~m~~~-g-----------------------------------~~p~--~~~~~~li~~~~~~g~~~~a 317 (565)
.|.+..|..+|+...+. | ++-+ ...|..+...--+-|+....
T Consensus 220 ~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gI 299 (677)
T KOG1915|consen 220 HGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGI 299 (677)
T ss_pred cCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhh
Confidence 55555555555544332 1 0101 22222222222223333332
Q ss_pred HHH--------HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHH----HH-HH---H
Q 008454 318 MKF--------KNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNV--VTYNTL----IN-GY---G 379 (565)
Q Consensus 318 ~~~--------~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~l----i~-~~---~ 379 (565)
.+. ++.+...+ +-|-.+|-..+..-...|+.+...++|+..... ++|-. ..|... |+ ++ .
T Consensus 300 Ed~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEl 377 (677)
T KOG1915|consen 300 EDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEEL 377 (677)
T ss_pred HHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 221 12222221 335667777777777788888888888888765 34421 111111 11 11 2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008454 380 QVGNSEMGASLYEEMLRNGIKVDILTYNAL----ILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSE 455 (565)
Q Consensus 380 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 455 (565)
...|.+.+.++|+..++. ++....||..+ .....++.++..|.+++.... |..|-..+|...|..-.+.++++
T Consensus 378 e~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred HhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHH
Confidence 457888888888888873 33344454433 333446788899999998876 45678888888888888999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 456 RAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKC-MAPDSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 456 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
.+..+|+..++-+ +-|-.+|......=...|+.+.|..+|.-+++.. +......|.+.|+.-...|.++.|..+|+++
T Consensus 455 RcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 455 RCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 9999999999875 5567888888888888999999999999888763 2334557888888888999999999999999
Q ss_pred HHCC
Q 008454 535 EIRG 538 (565)
Q Consensus 535 ~~~g 538 (565)
.+..
T Consensus 534 L~rt 537 (677)
T KOG1915|consen 534 LDRT 537 (677)
T ss_pred HHhc
Confidence 8764
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-12 Score=117.68 Aligned_cols=392 Identities=15% Similarity=0.095 Sum_probs=255.9
Q ss_pred HHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008454 145 IVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGF 224 (565)
Q Consensus 145 ~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 224 (565)
.+..-+..+....+|+..++-+++...++ .....--.+...+.+...+.+|++.|+.....-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~-----------------nag~lkmnigni~~kkr~fskaikfyrmaldqvp 268 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFP-----------------NAGILKMNIGNIHFKKREFSKAIKFYRMALDQVP 268 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccC-----------------CCceeeeeecceeeehhhHHHHHHHHHHHHhhcc
Confidence 33333444455556666666555553322 2222222355677888899999999988877532
Q ss_pred Cc----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---
Q 008454 225 LP----IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPS--- 297 (565)
Q Consensus 225 ~p----~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--- 297 (565)
.. .....+.+.-.+.+.|++++|+.-|+...+. .||..+-..|+-++...|+-++..+.|.+|+.....+|
T Consensus 269 sink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddk 346 (840)
T KOG2003|consen 269 SINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDK 346 (840)
T ss_pred ccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccc
Confidence 22 2345666777788999999999999998775 47876655566666677999999999999987533333
Q ss_pred ---------HHHHHHHH-----HHHHhcC--ChhHHHHHHHHHHHCCCCCCHH-------------HH--------HHHH
Q 008454 298 ---------VTTYNTLI-----SGHCNKG--LLSLAMKFKNLMEKNGIQPNVI-------------TF--------NTLI 340 (565)
Q Consensus 298 ---------~~~~~~li-----~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~-------------~~--------~~li 340 (565)
....+--| .-.-+.+ +-+++.-.-..++.--+.|+-. .+ -.-.
T Consensus 347 yi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka 426 (840)
T KOG2003|consen 347 YIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKA 426 (840)
T ss_pred ccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHH
Confidence 22222222 1111111 1111111111111111122210 00 0113
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--H----------------------------------HHHHhcCCh
Q 008454 341 FGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTL--I----------------------------------NGYGQVGNS 384 (565)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l--i----------------------------------~~~~~~g~~ 384 (565)
..|.+.|+++.|++++.-+.+..-..-...-+.| + ......|++
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 4688999999999999877654322111111111 0 001235788
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 385 EMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSM 464 (565)
Q Consensus 385 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 464 (565)
++|.+.|++.....-.-....| .+...+-..|++++|++.|-.+...-. -+..+..-+...|-...+...|++++.+.
T Consensus 507 dka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 9999999988876433222233 344556788999999999987754322 26677777888888899999999999888
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 008454 465 IRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGF 544 (565)
Q Consensus 465 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 544 (565)
... ++.|+.+...|...|-+.|+-..|.+.+-+-.+. ++-+..+...|...|....-++++...|++. .-+.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka--aliqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA--ALIQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH--HhcCccHH
Confidence 765 5778899999999999999999999887666554 6678889888998999999999999999987 55789998
Q ss_pred hHHHHH-hhcccCCCccC
Q 008454 545 DKLRTI-NCAPENGEKES 561 (565)
Q Consensus 545 ~~~~ll-~~~~~~g~~~~ 561 (565)
-|-.++ +|+.+.|+...
T Consensus 661 kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQK 678 (840)
T ss_pred HHHHHHHHHHHhcccHHH
Confidence 888777 56666787653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-12 Score=126.18 Aligned_cols=290 Identities=14% Similarity=0.089 Sum_probs=222.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHH
Q 008454 243 RVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGF--IPSVTTYNTLISGHCNKGLLSLAMKF 320 (565)
Q Consensus 243 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~ 320 (565)
+..+|+..|..+... +.-..+....+.++|...+++++|+++|+.+.+... .-+...|.+.+-.+-+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 467888888885543 333446677888899999999999999999887521 1267777777654433 222322
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008454 321 K-NLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGI 399 (565)
Q Consensus 321 ~-~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 399 (565)
+ +.+.+. -+-.+.+|.++.++|.-.++.+.|++.|++..+.+ +-...+|+.+..-+.....+|+|...|+..+....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 233333 23468899999999999999999999999998864 33678888888888899999999999999887533
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008454 400 KVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEML 479 (565)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 479 (565)
. +-..|..+...|.+.++++.|+-.|+.+.+.+.. +.+....+...+-+.|+.++|+++++++.... +-|...--..
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 2 4455667888899999999999999999987655 67777888888899999999999999999875 4455544455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008454 480 MSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKG 543 (565)
Q Consensus 480 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 543 (565)
+..+...+++++|++.++++.+. .+-+..++..+...|-+.|+.+.|+.-|-.+.+.+-++..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 66677889999999999999885 3445567888889999999999999999988766544443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-10 Score=108.65 Aligned_cols=313 Identities=15% Similarity=0.049 Sum_probs=238.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHc
Q 008454 199 LFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRIS--PNVYTLNMVMHAFCKL 276 (565)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~ 276 (565)
+..++-...+.+++++-.+.....|..-+...-+....+.-...+++.|+.+|+++.++.+- -|..+|..++..--..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 34566666788899999999999888766666666667777889999999999999887421 3677887776543222
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008454 277 GIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIF 356 (565)
Q Consensus 277 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 356 (565)
.+ +..+.+-.-.=-+--..|+..+..-|.-.++.++|..+|++..+.+.. ...+|+.+.+-|....+...|.+-+
T Consensus 313 sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 313 SK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHH
Confidence 22 222222211101124567777888889999999999999999987533 6778999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008454 357 SEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVP 436 (565)
Q Consensus 357 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 436 (565)
+...+.. +.|-..|..|.++|.-.+-..-|+-.|++..+... -|...|.+|.++|.+.++.++|++.|......|-.
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt- 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT- 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-
Confidence 9999875 77889999999999999999999999999998744 38999999999999999999999999999887655
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008454 437 NASTYSALITGQCVRKNSERAFQLYKSMIRS----GCRPN--KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSII 510 (565)
Q Consensus 437 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 510 (565)
+...|..|...|-+.++.++|...|..-++. |..-+ ...--.|..-+.+.+++++|..+......-
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-------- 536 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-------- 536 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--------
Confidence 6788999999999999999999999887763 32222 222233555677888888887765444332
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 511 LSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 511 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
.-..++|..+++++...
T Consensus 537 ----------~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 537 ----------ETECEEAKALLREIRKI 553 (559)
T ss_pred ----------CchHHHHHHHHHHHHHh
Confidence 23356677777766543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-11 Score=107.88 Aligned_cols=287 Identities=14% Similarity=0.123 Sum_probs=223.9
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCH
Q 008454 206 RKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNV------YTLNMVMHAFCKLGII 279 (565)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~ 279 (565)
..+.++|+++|-+|.+.+.. +.++--+|.+.|.+.|.+|.|+.+.+.+.+. ||. .....|.+-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 46899999999999985543 6677788999999999999999999999864 332 3445667778899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHH
Q 008454 280 ERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNV----ITFNTLIFGFCKKGKLHEANRI 355 (565)
Q Consensus 280 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~ 355 (565)
+.|+++|..+.+.|.- -......|+..|-...+|++|+++-+++.+.|-.+.. ..|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 9999999999876432 5667788999999999999999999999988755442 3345555666667899999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 356 FSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLV 435 (565)
Q Consensus 356 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (565)
+.+..+.+ +.++..--.+.+.....|++++|.+.++.+.+.+...-..+...|..+|.+.|+.++....+..+.+....
T Consensus 203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 99988764 34445555677888999999999999999999877666778899999999999999999999999886544
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHc
Q 008454 436 PNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ---NEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 436 p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~ 502 (565)
++. -..+........-.+.|..++.+-+.. +|+...+..++..-.. .|...+-...+++|+..
T Consensus 282 ~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 282 ADA--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred ccH--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 443 334444334445566777766666665 7999999999987543 34566777777777654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-09 Score=105.66 Aligned_cols=332 Identities=13% Similarity=0.019 Sum_probs=219.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 193 PLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHA 272 (565)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 272 (565)
..+|..-...|.+.+-++-|+.+|....+.-.. +...|......--..|..+....+|++.... ++-....|-.....
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 345556666677777777777777777664432 5566666666666667788888888887765 23345566666667
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008454 273 FCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEA 352 (565)
Q Consensus 273 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 352 (565)
+-..|++..|..++....+.... +...|.+-+..-.....++.|..+|.+.... .++...|..-++..--.+..++|
T Consensus 594 ~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHH
Confidence 77788888888888888776544 6777888888888888888888888877764 45666666666666667788888
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 353 NRIFSEMKATNVSPN-VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDK 431 (565)
Q Consensus 353 ~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 431 (565)
++++++..+. .|+ .-.|-.+.+.+-+.++.+.|...|..-.+. ++-.+-.|-.|...--+.|.+-+|..+++...-
T Consensus 671 ~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 671 LRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 8888887765 333 345666677777778888888777765554 333556677777777777888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH------------------------------HHHH
Q 008454 432 NSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFE------------------------------MLMS 481 (565)
Q Consensus 432 ~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~------------------------------~li~ 481 (565)
.+.. +...|-..|+.-.+.|+.+.|..+..++++. ++-+...|. .+..
T Consensus 748 kNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~ 825 (913)
T KOG0495|consen 748 KNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAK 825 (913)
T ss_pred cCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHH
Confidence 7655 7778888888888888888888887777764 233333333 3333
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 482 TFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
.|....+++.|.+.|.+.+..+. -...+|..+...+.+.|.-++-.+++.++.
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d~-d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 44444445555555555544321 123344444445555555555555555443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-10 Score=105.95 Aligned_cols=288 Identities=13% Similarity=0.099 Sum_probs=187.8
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 008454 241 SERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKF 320 (565)
Q Consensus 241 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 320 (565)
.|++..|+++..+-.+.+-. ....|..-.++.-..|+.+.+-.++.+..+..-.++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46677777776665555422 23344445555666677777777777776653344555566666667777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 321 KNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNV-------VTYNTLINGYGQVGNSEMGASLYEE 393 (565)
Q Consensus 321 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 393 (565)
++++.+.+.. +.........+|.+.|++.++..++..+.+.|.-.|. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777665432 5566666677777777777777777777776654443 3455555555555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 008454 394 MLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNK 473 (565)
Q Consensus 394 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 473 (565)
...+ .+-++..-..++.-+.++|+.++|.++.++..+.+..|+. .....+.+.++.+.-++..+.-... .+-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 5443 3345666667777778888888888888887777665551 1122344566666666666655543 23445
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008454 474 HIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRG 538 (565)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 538 (565)
..+..|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+..+|.+++++-...-
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 6777788888888888888888886666 46778888888888888888888888877765443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-10 Score=105.12 Aligned_cols=287 Identities=10% Similarity=0.028 Sum_probs=230.7
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008454 206 RKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEV 285 (565)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 285 (565)
.|+|.+|.++..+-.+.+-. ....|..-..+--+.|+.+.+-.++.+..+..-.++...+-...+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 48999999999998887755 34455666677778899999999999998764456677777888889999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008454 286 FKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNV-------ITFNTLIFGFCKKGKLHEANRIFSE 358 (565)
Q Consensus 286 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 358 (565)
++++.+.+.. +.........+|.+.|++.....++..|.+.|.--+. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 9999988655 6777888999999999999999999999999865443 4566666666666666665566666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 008454 359 MKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNA 438 (565)
Q Consensus 359 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 438 (565)
.... ...++..-.+++.-+.+.|+.++|.++.++..+++..+.. ...-.+.+-++.+.-.+..+...+.... ++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE-DP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC-Ch
Confidence 5543 3456667778888899999999999999999998877662 2223345667777777777766654333 55
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 439 STYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 439 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
..+..|...|.+.+.+.+|...|+..++. .|+..+|+.+..++.+.|+..+|.+..++....
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 78999999999999999999999988876 799999999999999999999999999887654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-11 Score=121.64 Aligned_cols=290 Identities=10% Similarity=-0.006 Sum_probs=197.8
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008454 208 KFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRI--SPNVYTLNMVMHAFCKLGIIERAVEV 285 (565)
Q Consensus 208 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~ 285 (565)
+.++|+..|.++...-.. ...+...+..+|...+++++|.++|+.+.+... .-+..+|...+-.+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 567788888885544322 345666777888888888888888888766431 1255667666644322 122222
Q ss_pred H-HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 286 F-KNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNV 364 (565)
Q Consensus 286 ~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 364 (565)
+ +.+.+.. +-...+|.++..+|.-+++.+.|++.|++..+... -...+|+.+..-+.....+|.|...|+......
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 2 2222221 23577888888888888888888888888877531 167788888888888888888888888776532
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008454 365 SPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSAL 444 (565)
Q Consensus 365 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 444 (565)
+-+-..|.-+...|.+.++++.|+-.|+++.+-+.. +.+....+...+.+.|+.++|+.+++++...+.. |+..--..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 222334445667788888888888888888876544 5666667777778888888888888888776555 55554455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 008454 445 ITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDS 508 (565)
Q Consensus 445 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 508 (565)
+..+...+++++|+..++++.+. ++-+..+|..+...|.+.|+.+.|+.-|--+.+...++..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 56667778888888888888775 2444566777888888888888888888777776444433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.3e-10 Score=107.07 Aligned_cols=366 Identities=13% Similarity=0.096 Sum_probs=253.6
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008454 144 SIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYG 223 (565)
Q Consensus 144 ~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 223 (565)
....+-+.++|++++|...+...++. |+..+..|.....+|...|+|+++++.-.+.++.+
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l-------------------~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~ 179 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL-------------------CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN 179 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc-------------------CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC
Confidence 34456677899999999999999987 66568899999999999999999999888888755
Q ss_pred CCcCHHHHHHHHHHHHcCCChHHHHH----------------------HHHH---------HHHCC--CCCCHHHHHHHH
Q 008454 224 FLPIIESCNKFLSSLLDSERVDIALG----------------------FYKE---------MRRNR--ISPNVYTLNMVM 270 (565)
Q Consensus 224 ~~p~~~~~~~ll~~~~~~~~~~~A~~----------------------~~~~---------m~~~~--~~p~~~~~~~li 270 (565)
.. -+.++..-.+++-..|++++|+. +++. +.+++ +-|......+..
T Consensus 180 P~-Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf 258 (606)
T KOG0547|consen 180 PD-YVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYF 258 (606)
T ss_pred cH-HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 22 25566666667777777665532 1111 11112 224444333333
Q ss_pred HHHHHc--------C-----CHHHHHHHHHHHHhCC------------------CC---CCHH------HHHHHHHHHHh
Q 008454 271 HAFCKL--------G-----IIERAVEVFKNMESMG------------------FI---PSVT------TYNTLISGHCN 310 (565)
Q Consensus 271 ~~~~~~--------g-----~~~~a~~~~~~m~~~g------------------~~---p~~~------~~~~li~~~~~ 310 (565)
..+... + ...++.+.+..-...| .. .|.. +.......+.-
T Consensus 259 ~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL 338 (606)
T KOG0547|consen 259 GSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFL 338 (606)
T ss_pred hhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhh
Confidence 332210 0 0112222111111001 00 1111 11111122334
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008454 311 KGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASL 390 (565)
Q Consensus 311 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 390 (565)
.|+.-.|..-|+..+.....+ ...|--+..+|....+.++..+.|++....+ +-|..+|..-...+.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 678888888899888875432 2337777788999999999999999998875 56777888888888889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--
Q 008454 391 YEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSG-- 468 (565)
Q Consensus 391 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-- 468 (565)
|++.+..... +...|-.+.-+..+.++++++...|++..++-. --+..|+.....+...++++.|.+.|+..++..
T Consensus 417 F~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP-~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 417 FQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP-NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9999987443 667788888888899999999999999988633 367789999999999999999999999998752
Q ss_pred ---CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 469 ---CRPNKH--IFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 469 ---~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
+..+.. +-..++.. .-.+++..|.++++++.+.+.+ ....|..|...-.+.|+.++|+++|++-.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 111222 22222222 2348999999999999986433 44578999999999999999999999864
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-09 Score=102.81 Aligned_cols=356 Identities=9% Similarity=-0.005 Sum_probs=205.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCC---------------------CCCcHHHHHHHHHhcccCCCCh
Q 008454 135 PSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDS---------------------FDLPSKLFDSILYSYRMCDSSP 193 (565)
Q Consensus 135 ~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~ 193 (565)
+...+.+.|..=+..|-+.|..-....++...+.-|. +...+.+|...+.. .+...
T Consensus 474 gv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv---fp~k~ 550 (913)
T KOG0495|consen 474 GVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV---FPCKK 550 (913)
T ss_pred ceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh---ccchh
Confidence 3444555555555555555555555555554444332 11222233333322 23344
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAF 273 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 273 (565)
.+|...+..=-..|..+....+|++....-.+ ....|-.....+...|++..|..++....+.... +...|...+..-
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle 628 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLE 628 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHh
Confidence 45555444444556666666666666554322 4445555555556666666666666666554322 455666666666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 008454 274 CKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPN-VITFNTLIFGFCKKGKLHEA 352 (565)
Q Consensus 274 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A 352 (565)
.....++.|..+|.+.... .|+...|.--+..---.+..++|.+++++..+. -|+ ...|..+...+-+.++++.|
T Consensus 629 ~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~a 704 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMA 704 (913)
T ss_pred hccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHH
Confidence 6666666666666665543 345555554444444456666666666665554 222 33444444555555666665
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 353 NRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKN 432 (565)
Q Consensus 353 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (565)
.+.|..-.+. ++-....|..+...--+.|.+-.|..+++...-.+.+ +...|...|.+-.+.|..+.|..++.+..+.
T Consensus 705 R~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 705 REAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555443322 2233344444444445555666666666666555443 5556666666666666666666555554332
Q ss_pred C-----------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 433 S-----------------------------LVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTF 483 (565)
Q Consensus 433 ~-----------------------------~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (565)
- +.-|....-.+...|.....+++|.+.|.+.+..+ +-+..+|..+...+
T Consensus 783 cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfe 861 (913)
T KOG0495|consen 783 CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFE 861 (913)
T ss_pred CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHH
Confidence 1 22355566677777888889999999999999875 55568899999999
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 008454 484 CQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~ 502 (565)
.++|.-+.-.+++......
T Consensus 862 l~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 862 LRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHhCCHHHHHHHHHHHhcc
Confidence 9999999888998887664
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.7e-09 Score=100.17 Aligned_cols=223 Identities=16% Similarity=0.024 Sum_probs=177.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008454 274 CKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEAN 353 (565)
Q Consensus 274 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 353 (565)
.-.|+.-.|..-|+..+.....++ ..|--+..+|....+.++.++.|+...+.+.. |+.+|..-...+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 346788899999999988754433 23777778899999999999999999987643 6777877788888889999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008454 354 RIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNS 433 (565)
Q Consensus 354 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 433 (565)
.=|++..... +-+...|..+.-+..+.+.++++...|++..++ ++-.+.+|+.....+...+++++|.+.|+...+..
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999998764 445667777777888999999999999999987 44478899999999999999999999999987642
Q ss_pred CC-----CCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 434 LV-----PNAS--TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 434 ~~-----p~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
.. .+.. +--.++. +.-.+++..|.+++..+++.. +-....|..|...-.+.|+.++|+++|++....
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred cccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22 1111 1122222 223489999999999999864 344678999999999999999999999988654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-11 Score=123.35 Aligned_cols=90 Identities=22% Similarity=0.293 Sum_probs=54.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 008454 250 FYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGI 329 (565)
Q Consensus 250 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 329 (565)
++-.+...|+.||..||..+|.-||..|+.+.|- +|.-|.-.....+...++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4445555666666666666666666666666665 6666665555555666666666666666555544
Q ss_pred CCCHHHHHHHHHHHHHcCCHHH
Q 008454 330 QPNVITFNTLIFGFCKKGKLHE 351 (565)
Q Consensus 330 ~~~~~~~~~li~~~~~~g~~~~ 351 (565)
.|...+|..|..+|...||...
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH
Confidence 4556666666666666666544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.2e-10 Score=114.84 Aligned_cols=216 Identities=12% Similarity=0.074 Sum_probs=138.7
Q ss_pred chhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHh---------cCChHHHHHHHHHHHHCCCCc
Q 008454 156 FKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAH---------RKKFRNATDTFCQMRDYGFLP 226 (565)
Q Consensus 156 ~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~p 226 (565)
+++|..++++.++. .|.++..|..+..+|.. .+++++|...+++..+.+..
T Consensus 277 ~~~A~~~~~~Al~l-------------------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~- 336 (553)
T PRK12370 277 LQQALKLLTQCVNM-------------------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN- 336 (553)
T ss_pred HHHHHHHHHHHHhc-------------------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-
Confidence 45677777776665 44556666666655442 23477888888888776644
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008454 227 IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLIS 306 (565)
Q Consensus 227 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 306 (565)
+..++..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+..++.
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~ 414 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLW 414 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHH
Confidence 67777777777778888888888888877764 224566777777778888888888888887776433 2222333444
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 008454 307 GHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEM 386 (565)
Q Consensus 307 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 386 (565)
.+...|++++|...++++.....+-+...+..+..++...|++++|...+.++.... +.+....+.+...|...| ++
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~ 491 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ER 491 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HH
Confidence 556677788888887777654322244456666677777888888888877765441 222333444444555555 36
Q ss_pred HHHHHHHHHH
Q 008454 387 GASLYEEMLR 396 (565)
Q Consensus 387 A~~~~~~m~~ 396 (565)
|...++.+.+
T Consensus 492 a~~~l~~ll~ 501 (553)
T PRK12370 492 ALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHH
Confidence 6666666554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.2e-09 Score=100.49 Aligned_cols=284 Identities=12% Similarity=0.055 Sum_probs=214.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 265 TLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFC 344 (565)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 344 (565)
....-..-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+-.++.+.- +-...+|-++.--|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHH
Confidence 33334445566788888888888887763 3355555666668888888888888888887763 346778888888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 345 KKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAY 424 (565)
Q Consensus 345 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 424 (565)
..|+..+|.+.|.+....+ +.=...|-.....|.-.|..++|+..+...-+. ++-....+--+..-|.+.++.+.|.+
T Consensus 324 ~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHH
Confidence 8899999999998876543 122356777888888888889998888877664 11112223335556778899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 425 LVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRS--GC----RPNKHIFEMLMSTFCQNEDFDRAAEVLLE 498 (565)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (565)
.|.+....... |+..++.+.......+.+.+|..+|+..+.. .+ .--..+++.|..++.+.+.+++|+..+++
T Consensus 402 Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 402 FFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 99998876433 7778888888888899999999999988842 11 11345688999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhcccC
Q 008454 499 MLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAPEN 556 (565)
Q Consensus 499 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 556 (565)
.+.. .+-+..++.++.-.|...|+++.|.+.|.+. ..+.|+..+...++..+.+.
T Consensus 481 aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKa--L~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 481 ALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKA--LALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHH--HhcCCccHHHHHHHHHHHHh
Confidence 9987 4458899999999999999999999999988 45678888777777655544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.6e-08 Score=96.12 Aligned_cols=389 Identities=17% Similarity=0.123 Sum_probs=255.6
Q ss_pred hhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChH
Q 008454 115 KVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPL 194 (565)
Q Consensus 115 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (565)
...++|+..+++.+.+.+..| --.++.....-.|...|+-++|.+..+..++. ...+.+
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~--eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~-------------------d~~S~v 76 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFP--EHGESLAMKGLTLNCLGKKEEAYELVRLGLRN-------------------DLKSHV 76 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCC--ccchhHHhccchhhcccchHHHHHHHHHHhcc-------------------Ccccch
Confidence 345689999999998888543 34567777777788889999999988877765 344667
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFC 274 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 274 (565)
.|..+.-.+...+++++|++.|......+.. |...|.-+.-.-.+.++++.....-..+.+.. +-....|..+..++.
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~ 154 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQH 154 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHH
Confidence 7888888888888999999999999886643 66677666666666777777766666665542 224556777777788
Q ss_pred HcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHH------HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 275 KLGIIERAVEVFKNMESMG-FIPSVTTYNTLI------SGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKG 347 (565)
Q Consensus 275 ~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li------~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 347 (565)
-.|+...|..++++..+.. -.|+...|.... ....+.|..++|++.+..-... +.-....-..-...+.+.+
T Consensus 155 L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~ 233 (700)
T KOG1156|consen 155 LLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLG 233 (700)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHh
Confidence 8889999998888887653 245555554432 3345577777777776655433 1112222334456778888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChHHHH-HHHHHHHH-----------------------------
Q 008454 348 KLHEANRIFSEMKATNVSPNVVTYNTL-INGYGQVGNSEMGA-SLYEEMLR----------------------------- 396 (565)
Q Consensus 348 ~~~~A~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~-~~~~~m~~----------------------------- 396 (565)
++++|..++..+... .||...|... ..++.+-.+.-++. .+|....+
T Consensus 234 ~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL 311 (700)
T KOG1156|consen 234 QLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYL 311 (700)
T ss_pred hHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHH
Confidence 999999999888877 3565555543 33443233333333 44444332
Q ss_pred -----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HhCCC----------CCCHH--HHHHHHHHHHhc
Q 008454 397 -----NGIKVDILTYNALILGLCKEGKTKKAAYLVKDL--------DKNSL----------VPNAS--TYSALITGQCVR 451 (565)
Q Consensus 397 -----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~----------~p~~~--~~~~li~~~~~~ 451 (565)
.|+.+ ++..+...|- +..++. +++++ ...|. .|... ++-.++..+-+.
T Consensus 312 ~~~l~Kg~p~---vf~dl~SLyk---~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~ 384 (700)
T KOG1156|consen 312 RPLLSKGVPS---VFKDLRSLYK---DPEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKL 384 (700)
T ss_pred HHHhhcCCCc---hhhhhHHHHh---chhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHc
Confidence 22221 1111221111 111111 22221 11111 23333 456677888899
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008454 452 KNSERAFQLYKSMIRSGCRPNK-HIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKL 530 (565)
Q Consensus 452 ~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 530 (565)
|+++.|..+++.++++ .|+. ..|..=...+...|++++|..++++..+.+ .+|..+-..-..-..++++.++|.++
T Consensus 385 g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~ 461 (700)
T KOG1156|consen 385 GDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEV 461 (700)
T ss_pred ccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHH
Confidence 9999999999999987 5553 455555677888999999999999998874 34666555667777889999999999
Q ss_pred HHHHHHCCC
Q 008454 531 FRKMEIRGL 539 (565)
Q Consensus 531 ~~~m~~~g~ 539 (565)
...+...|.
T Consensus 462 ~skFTr~~~ 470 (700)
T KOG1156|consen 462 LSKFTREGF 470 (700)
T ss_pred HHHhhhccc
Confidence 999988875
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.9e-10 Score=116.50 Aligned_cols=251 Identities=12% Similarity=0.039 Sum_probs=183.0
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH---------hCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccC
Q 008454 119 DYVLSLEFFTWVQTHKPSSLTLETHSIVLHILT---------KNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMC 189 (565)
Q Consensus 119 ~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~---------~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (565)
++..|+++|+.+....| .+...|..+..++. ..+++++|...++++++. .
T Consensus 276 ~~~~A~~~~~~Al~ldP--~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l-------------------d 334 (553)
T PRK12370 276 SLQQALKLLTQCVNMSP--NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL-------------------D 334 (553)
T ss_pred HHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc-------------------C
Confidence 56789999999998765 45666666665443 224478899999988887 5
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008454 190 DSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMV 269 (565)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 269 (565)
|.++.++..+...+...|++++|...|++..+.+.. +...+..+...+...|++++|...+++..+.... +...+..+
T Consensus 335 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~ 412 (553)
T PRK12370 335 HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITK 412 (553)
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHH
Confidence 668889999999999999999999999999997744 6788899999999999999999999999887533 23333444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008454 270 MHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKL 349 (565)
Q Consensus 270 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 349 (565)
+..+...|++++|+..++++.+...+-+...+..+..++...|+.++|...+.++.... +.+....+.+...|+..|
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g-- 489 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS-- 489 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--
Confidence 55567789999999999998765322245567778888999999999999999876652 223445566666777777
Q ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008454 350 HEANRIFSEMKATN-VSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNG 398 (565)
Q Consensus 350 ~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 398 (565)
++|...++.+.+.. ..+....+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 490 ~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 47888777766531 11222222 33334456676666666 7777653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.5e-10 Score=101.76 Aligned_cols=200 Identities=14% Similarity=0.110 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 333 VITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILG 412 (565)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 412 (565)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3445555666666666666666666665542 233455555666666666666666666666655332 44555666666
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008454 413 LCKEGKTKKAAYLVKDLDKNSLVP-NASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDR 491 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 491 (565)
+...|++++|...++++......+ ....+..+...+...|++++|.+.+.+..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 666777777777777665532211 23455556666777777777777777777653 3345566677777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 492 AAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 492 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 536 (565)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777777665 334555566666777777777777777776644
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-07 Score=87.88 Aligned_cols=385 Identities=9% Similarity=0.032 Sum_probs=259.6
Q ss_pred CChHHHHHHHH-HHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHH
Q 008454 118 KDYVLSLEFFT-WVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVF 196 (565)
Q Consensus 118 ~~~~~al~~f~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (565)
++...|.++|+ |+. +.|+..++...|+.=.+-+.++.|++++++++- +-|+...|
T Consensus 155 gNi~gaRqiferW~~----w~P~eqaW~sfI~fElRykeieraR~IYerfV~--------------------~HP~v~~w 210 (677)
T KOG1915|consen 155 GNIAGARQIFERWME----WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--------------------VHPKVSNW 210 (677)
T ss_pred cccHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--------------------ecccHHHH
Confidence 45666777765 443 345666777777777777777777777766554 33566666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC-CCC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 008454 197 DLLFKTYAHRKKFRNATDTFCQMRDY-GFL-PIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPN--VYTLNMVMHA 272 (565)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~ 272 (565)
-...+.=.++|....|..+|+...+. |-. -+...+.++...=.+++.++.|.-+|+-.++. ++.+ ...|..+...
T Consensus 211 ikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~f 289 (677)
T KOG1915|consen 211 IKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAF 289 (677)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHH
Confidence 66677777778888888888777653 210 12233444444444566677777777776654 2222 3444444443
Q ss_pred HHHcCCHHHHHHH--------HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHH--
Q 008454 273 FCKLGIIERAVEV--------FKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNV--ITFNTLI-- 340 (565)
Q Consensus 273 ~~~~g~~~~a~~~--------~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li-- 340 (565)
=-+-|+.....+. |+.+.+.+ +-|-.+|-..+..-...|+.+...+++++.+.+ ++|-. ..|.-.|
T Consensus 290 EKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYL 367 (677)
T KOG1915|consen 290 EKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYL 367 (677)
T ss_pred HHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHH
Confidence 3344554433322 33344433 347778888888888899999999999999876 34421 1122211
Q ss_pred --H----HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 341 --F----GFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGY----GQVGNSEMGASLYEEMLRNGIKVDILTYNALI 410 (565)
Q Consensus 341 --~----~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 410 (565)
+ .-....+.+.+.++++...+. ++-...||..+=-.| .+..++..|.+++...+. .-|-..+|...|
T Consensus 368 WinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YI 444 (677)
T KOG1915|consen 368 WINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYI 444 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHH
Confidence 1 123467899999999998884 455566666543333 467899999999998875 467888999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCH
Q 008454 411 LGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSG-CRPNKHIFEMLMSTFCQNEDF 489 (565)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~ 489 (565)
..-.+.++++.+.++++...+.+.. +..+|......-...|+.+.|..+|.-+++.. .......|...|..=...|.+
T Consensus 445 elElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ 523 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF 523 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH
Confidence 9999999999999999999998765 77788888777778999999999999998752 122345567777777789999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 008454 490 DRAAEVLLEMLEKCMAPDSIILSELYSGLH-----HCG-----------KDELAMKLFRKME 535 (565)
Q Consensus 490 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-----~~g-----------~~~~A~~~~~~m~ 535 (565)
+.|..+++++++.. +...+|-++...-. ..| ....|.++|++..
T Consensus 524 ekaR~LYerlL~rt--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 524 EKARALYERLLDRT--QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHHHHHHHHHHhc--ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 99999999999863 33445555544333 333 5567888888754
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.4e-10 Score=99.85 Aligned_cols=230 Identities=13% Similarity=0.051 Sum_probs=183.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 197 DLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKL 276 (565)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 276 (565)
+.+.++|.+.|.+.+|.+-|+...+.- |-+++|-.|-+.|.+.+++..|+.+|.+-.+. .+-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 568889999999999999999887754 56778888889999999999999999887764 233455556677888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008454 277 GIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIF 356 (565)
Q Consensus 277 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 356 (565)
++.++|.++|+...+... .++.....+...|.-.++.+.|+++++++.+.|+. +...|+.+.-+|.-.+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999999887642 36666667777888889999999999999999976 8888888888888889999999888
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 357 SEMKATNVSPN--VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKN 432 (565)
Q Consensus 357 ~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (565)
++....-..|+ ...|..+.......||+..|.+.|.-....+.. +...++.|.-.-.+.|++++|..++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 88776433333 345667777777888999999988888776543 6677888887788889999998888877654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-09 Score=100.59 Aligned_cols=197 Identities=11% Similarity=0.015 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFC 274 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 274 (565)
.+..+...|...|++++|.+.+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 3334444444445555555555444443211 33444444444455555555555555444432 123334444444455
Q ss_pred HcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008454 275 KLGIIERAVEVFKNMESMGF-IPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEAN 353 (565)
Q Consensus 275 ~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 353 (565)
..|++++|.+.+++...... ......+..+...+...|++++|...+++..+... .+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555443211 11223344445555555555555555555554321 13444555555555566666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008454 354 RIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEML 395 (565)
Q Consensus 354 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 395 (565)
+.+++..+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 665555544 13334444455555555566666655555544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.3e-07 Score=88.65 Aligned_cols=270 Identities=12% Similarity=0.096 Sum_probs=153.5
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCC------CCcCHHHHHHHHHHHHcCCChH---HHHHHHHHHHHCCCCCC
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYG------FLPIIESCNKFLSSLLDSERVD---IALGFYKEMRRNRISPN 262 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~ll~~~~~~~~~~---~A~~~~~~m~~~~~~p~ 262 (565)
+|..-+-.|..+++.+++++|-+.+....... .+.+-..|+.+.....+..+.- ....+++.+... -+|
T Consensus 168 ~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftD 245 (835)
T KOG2047|consen 168 APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTD 245 (835)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcH
Confidence 45556777888888999999988888775431 1224556666666666554322 233444444332 234
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------C------ChhHHH
Q 008454 263 --VYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNK----------------G------LLSLAM 318 (565)
Q Consensus 263 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------g------~~~~a~ 318 (565)
...|++|...|.+.|.+++|.++|++....- .++.-|..+.+.|+.- | +++-.+
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~ 323 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM 323 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence 3568888888999999999999888876541 2333333444444321 1 122222
Q ss_pred HHHHHHHHCC-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhc
Q 008454 319 KFKNLMEKNG-----------IQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSP------NVVTYNTLINGYGQV 381 (565)
Q Consensus 319 ~~~~~m~~~g-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~------~~~~~~~li~~~~~~ 381 (565)
.-|+.+...+ -+-++..|..-+.. ..|+..+....+.++.+. +.| -...|..+.+.|-..
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhc
Confidence 3333333321 01133333333332 245666777777776653 111 123466777777888
Q ss_pred CChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----------------CHHHH
Q 008454 382 GNSEMGASLYEEMLRNGIKVD---ILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVP-----------------NASTY 441 (565)
Q Consensus 382 g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----------------~~~~~ 441 (565)
|+.+.|..+|++..+...+-- ..+|..-...-.+..+++.|+++++.....--.| +...|
T Consensus 401 ~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 888888888888877644322 3455555566666777788888777664321111 12234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008454 442 SALITGQCVRKNSERAFQLYKSMIRSG 468 (565)
Q Consensus 442 ~~li~~~~~~~~~~~A~~~~~~m~~~~ 468 (565)
...+..--..|-++....+|+++++..
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 444444445566667777777776654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.5e-10 Score=100.83 Aligned_cols=234 Identities=13% Similarity=0.058 Sum_probs=171.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 008454 262 NVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITF-NTLI 340 (565)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~-~~li 340 (565)
|-+.-+.+.++|.+.|.+.+|.+.++.-.+. .|-+.||..|-.+|.+..+...|+.++.+-.+. .|..+|| .-+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 3344466777888888888888888877665 456777888888888888888888888877765 3444444 4455
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008454 341 FGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTK 420 (565)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 420 (565)
..+-..++.++|.++++...+.. +.++....++...|.-.++.+.|+.+|.++.+.|+. +...|+.+.-+|.-.++++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 67777788888888888877764 556666677777777788888888888888888876 7778888888888888888
Q ss_pred HHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 421 KAAYLVKDLDKNSLVPN--ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLE 498 (565)
Q Consensus 421 ~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (565)
-++.-|......--.|+ ...|..+.......|++..|.+.|+-.+.++ ..+...++.|.-.-.+.|++++|..+++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 88888777765433333 3356666666677788888888888777664 44566777777777778888888888777
Q ss_pred HHHc
Q 008454 499 MLEK 502 (565)
Q Consensus 499 ~~~~ 502 (565)
....
T Consensus 455 A~s~ 458 (478)
T KOG1129|consen 455 AKSV 458 (478)
T ss_pred hhhh
Confidence 6653
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-08 Score=100.07 Aligned_cols=293 Identities=14% Similarity=0.098 Sum_probs=208.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKL--- 276 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--- 276 (565)
...+...|++++|++.++.-...- .............+.+.|+.++|..+|..+++.++ .|...|..+..+....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I-~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQI-LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccc
Confidence 456678899999999998865543 32566778888999999999999999999998863 3455555555555332
Q ss_pred --CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008454 277 --GIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLS-LAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEAN 353 (565)
Q Consensus 277 --g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 353 (565)
.+.+...++|+++...- |.......+.-.+.....+. .+..++..+...|++ .+++.+-..|....+.+-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 25777888999887653 33333333322233322333 344567777888865 35666666666555566666
Q ss_pred HHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 354 RIFSEMKAT----N----------VSPNV--VTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEG 417 (565)
Q Consensus 354 ~~~~~m~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 417 (565)
+++..+... + -+|.. .++..+...|...|++++|++++++.+++... .+..|..-...+-..|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCC
Confidence 666665432 1 12333 24456677888999999999999999987433 4788888899999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--------HHHHHHHHHhcCCH
Q 008454 418 KTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHI--------FEMLMSTFCQNEDF 489 (565)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~--------~~~li~~~~~~g~~ 489 (565)
++.+|.+.++.....+.. |...-+..+..+.++|+.++|.+++....+.+..|-... ......+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999988765 777778888889999999999999999887664333221 23456678899999
Q ss_pred HHHHHHHHHHHH
Q 008454 490 DRAAEVLLEMLE 501 (565)
Q Consensus 490 ~~A~~~~~~~~~ 501 (565)
..|++.|..+.+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999888766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-06 Score=85.48 Aligned_cols=372 Identities=12% Similarity=0.089 Sum_probs=225.7
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCC-----CCcHHHHHHHHHhccc----
Q 008454 118 KDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSF-----DLPSKLFDSILYSYRM---- 188 (565)
Q Consensus 118 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~-----~~~~~~~~~~~~~~~~---- 188 (565)
+-|..++.+++.-++- +++.-...+..|++.+++++|.+.+..++....+ ..+..+|..+......
T Consensus 152 ~lPets~rvyrRYLk~-----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~ 226 (835)
T KOG2047|consen 152 GLPETSIRVYRRYLKV-----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDK 226 (835)
T ss_pred CChHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcch
Confidence 3456677777766653 3445667788999999999999999888765321 1233444333322111
Q ss_pred -----------------CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC----------
Q 008454 189 -----------------CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDS---------- 241 (565)
Q Consensus 189 -----------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---------- 241 (565)
.+--...|.+|.+.|.+.|.+++|.++|++....- ..+.-+..+.++|+..
T Consensus 227 ~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me 304 (835)
T KOG2047|consen 227 VQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKME 304 (835)
T ss_pred hcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 11123578999999999999999999999987642 2333444444444321
Q ss_pred ------C------ChHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--
Q 008454 242 ------E------RVDIALGFYKEMRRNRI-----------SPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIP-- 296 (565)
Q Consensus 242 ------~------~~~~A~~~~~~m~~~~~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-- 296 (565)
+ +++-.+.-|+.+...+. +-++..|..-+. +..|+..+-...|.+..+. +.|
T Consensus 305 ~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~k 381 (835)
T KOG2047|consen 305 LADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKK 381 (835)
T ss_pred hhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCccc
Confidence 1 12233444444433221 123333433332 2456677777778777654 222
Q ss_pred ----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------
Q 008454 297 ----SVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPN---VITFNTLIFGFCKKGKLHEANRIFSEMKATN------ 363 (565)
Q Consensus 297 ----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------ 363 (565)
-...|..+...|-..|+++.|..+|++..+-..+-- ..+|....+.=.+..+++.|+++++.....-
T Consensus 382 a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~ 461 (835)
T KOG2047|consen 382 AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE 461 (835)
T ss_pred CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence 235677888899999999999999999876543211 3456666666677888999999888765321
Q ss_pred -----CC------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 364 -----VS------PNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKN 432 (565)
Q Consensus 364 -----~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (565)
.+ -+...|...++.--..|-++....+|+.+.+..+. ++...-.....+-.+.-++++.+++++-...
T Consensus 462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 462 YYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred hhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 01 12233555555555677888888899988887654 3333333444445566677888877765554
Q ss_pred CCCCCHH-HHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHH
Q 008454 433 SLVPNAS-TYSALITGQCV---RKNSERAFQLYKSMIRSGCRPNKHIFEMLM--STFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 433 ~~~p~~~-~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~ 501 (565)
-..|+.. .|+..+..+.+ ...++.|..+|++.++ |++|...-+-.|+ ..=.+.|....|+.+++++..
T Consensus 541 Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 541 FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3345543 45655555543 2357888888888888 6665543222222 122234666777777776543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-08 Score=100.09 Aligned_cols=299 Identities=13% Similarity=0.078 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008454 141 ETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMR 220 (565)
Q Consensus 141 ~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 220 (565)
+..-....++...|++++|++.+++..+. ..............+.+.|+.++|..+|..+.
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~-------------------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li 65 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQ-------------------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELI 65 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhh-------------------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566677889999999999999875554 23345667788899999999999999999999
Q ss_pred HCCCCcCHHHHHHHHHHHHc-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCC
Q 008454 221 DYGFLPIIESCNKFLSSLLD-----SERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGII-ERAVEVFKNMESMGF 294 (565)
Q Consensus 221 ~~~~~p~~~~~~~ll~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~ 294 (565)
+.++. +...|..+..++.- ....+....+|+++...- |.......+.-.+.....+ ..+...+..+...|+
T Consensus 66 ~rNPd-n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv 142 (517)
T PF12569_consen 66 DRNPD-NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV 142 (517)
T ss_pred HHCCC-cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 99854 55666666666622 235778889999887653 3333332222222222223 245556677777786
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----C----------CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHH
Q 008454 295 IPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKN----G----------IQPNVI--TFNTLIFGFCKKGKLHEANRIFSE 358 (565)
Q Consensus 295 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~ 358 (565)
+ .+|+.|-..|......+-..+++...... | -.|+.. ++..+...|...|++++|++++++
T Consensus 143 P---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~ 219 (517)
T PF12569_consen 143 P---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDK 219 (517)
T ss_pred c---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5 34555656666555555555666655432 1 123443 445567788899999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 008454 359 MKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNA 438 (565)
Q Consensus 359 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 438 (565)
..+.. +..+..|..-.+.+-+.|++.+|.+.++.....+.. |...-+..+..+.+.|++++|.+++......+..|..
T Consensus 220 aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 220 AIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred HHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 99874 334677888899999999999999999999998665 8888888999999999999999999988776643322
Q ss_pred H--------HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 439 S--------TYSALITGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 439 ~--------~~~~li~~~~~~~~~~~A~~~~~~m~~ 466 (565)
. .......+|.+.|++..|++.|....+
T Consensus 298 ~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 298 NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 124456788899999999887776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.1e-10 Score=112.95 Aligned_cols=249 Identities=12% Similarity=0.097 Sum_probs=156.0
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 216 FCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFI 295 (565)
Q Consensus 216 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 295 (565)
+-.+...|+.|+-.+|..+|.-||..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+. .
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 344455555566666666666666666665555 5555554444455555555555555555555443 3
Q ss_pred CCHHHHHHHHHHHHhcCChhH-----------------------HHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHH
Q 008454 296 PSVTTYNTLISGHCNKGLLSL-----------------------AMKFKNLMEK-NGIQPNVITFNTLIFGFCKKGKLHE 351 (565)
Q Consensus 296 p~~~~~~~li~~~~~~g~~~~-----------------------a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~ 351 (565)
|...+|..|..+|...|+... ...++..+.- .+.-||.. ..+......|-++.
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaq 157 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQ 157 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHH
Confidence 555556666666666555433 2222222111 11122222 23444455677777
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 352 ANRIFSEMKATN-VSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLD 430 (565)
Q Consensus 352 A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 430 (565)
+++++..+.... ..|.. .+++-+.... ....++........-.++..+|.+++.+-...|+.+.|..++.+|.
T Consensus 158 llkll~~~Pvsa~~~p~~----vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQ----VFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHhhCCcccccchHH----HHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 777776664432 11111 1244433322 2233333333322225899999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008454 431 KNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNED 488 (565)
Q Consensus 431 ~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 488 (565)
+.|+..+...|..|+-+ .++...+..+++-|.+.|+.|+..|+...+..+.++|.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999898888888766 88888999999999999999999999998888888665
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-11 Score=80.93 Aligned_cols=49 Identities=43% Similarity=0.830 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008454 261 PNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHC 309 (565)
Q Consensus 261 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 309 (565)
||..+||.+|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.9e-07 Score=88.08 Aligned_cols=402 Identities=13% Similarity=0.110 Sum_probs=213.3
Q ss_pred hhhccCCChHHHHHHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHH
Q 008454 98 TALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSK 177 (565)
Q Consensus 98 ~~~~~~l~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~ 177 (565)
...+.+...-...++.+.+-++-+.|.+..+...+++.- +..-|+.+.-+.-..+++++|...+..++..+
T Consensus 35 ~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~--S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~------- 105 (700)
T KOG1156|consen 35 KKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK--SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE------- 105 (700)
T ss_pred HhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc--cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-------
Confidence 334445555566666677777777777777777765432 22334444444444467788888887777663
Q ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 008454 178 LFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRN 257 (565)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 257 (565)
+.+..++.-+.-.-++.|+++.....-....+.... ....|..+..+..-.|+...|..++++..+.
T Consensus 106 ------------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 106 ------------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred ------------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 223333333333334444555544444444443211 2334444444555555555555555554433
Q ss_pred C-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 008454 258 R-ISPNVYTLNMVM------HAFCKLGIIERAVEVFKNMESMGFIPSVTTY-NTLISGHCNKGLLSLAMKFKNLMEKNGI 329 (565)
Q Consensus 258 ~-~~p~~~~~~~li------~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~ 329 (565)
. -.|+...|.... ....+.|.+++|++.+...... ..|...+ .+-...+.+.+++++|..++..+...
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r-- 248 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER-- 248 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--
Confidence 2 123333332211 1223344444444444333221 0111111 22333444555555555555555544
Q ss_pred CCCHHHHHHHH-HHHHHcC-----------------------------------CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008454 330 QPNVITFNTLI-FGFCKKG-----------------------------------KLHEANRIFSEMKATNVSPNVVTYNT 373 (565)
Q Consensus 330 ~~~~~~~~~li-~~~~~~g-----------------------------------~~~~A~~~~~~m~~~~~~~~~~~~~~ 373 (565)
.||...|...+ .++.+.. -.+..-+++..+.+.|+++ ++..
T Consensus 249 nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~d 325 (700)
T KOG1156|consen 249 NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKD 325 (700)
T ss_pred CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhh
Confidence 23333333222 2221111 1222333444444455432 2333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH--------CCC----------CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008454 374 LINGYGQVGNSEMGASLYEEMLR--------NGI----------KVDI--LTYNALILGLCKEGKTKKAAYLVKDLDKNS 433 (565)
Q Consensus 374 li~~~~~~g~~~~A~~~~~~m~~--------~~~----------~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 433 (565)
+...|-.-...+ ++++++. .|. .|.. .++..++..+-..|+++.|...++.....
T Consensus 326 l~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH- 400 (700)
T KOG1156|consen 326 LRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH- 400 (700)
T ss_pred hHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-
Confidence 333322211111 3332221 111 2333 45567888899999999999999999875
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCH--
Q 008454 434 LVPNA-STYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMA--PDS-- 508 (565)
Q Consensus 434 ~~p~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~-- 508 (565)
.|+. ..|-.=.+.+...|++++|...+++..+.. .+|...-..-..-..++++.++|.++.....+.|.. .+.
T Consensus 401 -TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~ 478 (700)
T KOG1156|consen 401 -TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAE 478 (700)
T ss_pred -CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHH
Confidence 3443 345555688999999999999999999876 566665556677778899999999999888777641 011
Q ss_pred --HHHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 008454 509 --IILSEL--YSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 509 --~~~~~l--i~~~~~~g~~~~A~~~~~~m~ 535 (565)
-+|-.+ ..+|.+.|++.+|++=|..+.
T Consensus 479 mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 479 MQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 123333 456778888877776555543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-11 Score=80.52 Aligned_cols=50 Identities=36% Similarity=0.526 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhccc
Q 008454 506 PDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAPE 555 (565)
Q Consensus 506 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 555 (565)
||..+|+.+|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777777777777777777777777777777777777777777776653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-07 Score=85.36 Aligned_cols=396 Identities=10% Similarity=0.060 Sum_probs=207.4
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHH
Q 008454 117 QKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVF 196 (565)
Q Consensus 117 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (565)
++|+..|+.+.++...... .-...+-.++.++..+.|++++|...+.-+.+.. .++..++
T Consensus 35 ~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-------------------~~~~el~ 94 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-------------------DAPAELG 94 (557)
T ss_pred cccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-------------------CCCcccc
Confidence 4577778777776653221 1122344567777788888888888888777652 2333444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHH-HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 197 DLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCN-KFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK 275 (565)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 275 (565)
-.|.-++.-.|.+.+|..+-.+.. +...++ .++....+.++-++-..+-..+... ..---++......
T Consensus 95 vnLAcc~FyLg~Y~eA~~~~~ka~------k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYm 163 (557)
T KOG3785|consen 95 VNLACCKFYLGQYIEAKSIAEKAP------KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYM 163 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhCC------CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHH
Confidence 455555556677777766655543 222333 3334444555555555555444321 1122223333333
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CC----
Q 008454 276 LGIIERAVEVFKNMESMGFIPSVTTYNT-LISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKK--GK---- 348 (565)
Q Consensus 276 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--g~---- 348 (565)
.-.+.+|++++......+ |+-...|. +.-+|.+..-++-+.+++.-..+. ++.+..+.|.......+. |+
T Consensus 164 R~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~ 240 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAED 240 (557)
T ss_pred HHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHH
Confidence 345667777777766532 33344443 334455666666666666655543 222333334333333322 11
Q ss_pred -----------------------------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008454 349 -----------------------------LHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGI 399 (565)
Q Consensus 349 -----------------------------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 399 (565)
-+.|++++--+.+. - +..-..|+-.|.+.+++.+|..+.+++.-.
T Consensus 241 E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt-- 314 (557)
T KOG3785|consen 241 EKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLDPT-- 314 (557)
T ss_pred HHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcCCC--
Confidence 12233332222221 1 122233444556677777777766655321
Q ss_pred CCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 008454 400 KVDILTYNALILGL-----CKEGKTKKAAYLVKDLDKNSLVPNAS-TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNK 473 (565)
Q Consensus 400 ~~~~~~~~~li~~~-----~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 473 (565)
.|-......++.+- .....+.-|...|+-.-+.+..-|.. --.++...+.-..++++.+-+++.+..-= ..|.
T Consensus 315 tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD 393 (557)
T KOG3785|consen 315 TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDD 393 (557)
T ss_pred ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcc
Confidence 22222222222211 11122344555555444433322221 23445555566667777777777766542 2333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH-hh
Q 008454 474 HIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTI-NC 552 (565)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~ 552 (565)
..--.+.++.+..|++.+|+++|-++....++.+......|.++|.+.|+++.|+.++-++ +-..+...+..+| .-
T Consensus 394 ~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~ 470 (557)
T KOG3785|consen 394 DFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIAND 470 (557)
T ss_pred hhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHH
Confidence 3333477888889999999999977766555644444566678889999999887776554 3334556666555 34
Q ss_pred cccC
Q 008454 553 APEN 556 (565)
Q Consensus 553 ~~~~ 556 (565)
|-+.
T Consensus 471 CYk~ 474 (557)
T KOG3785|consen 471 CYKA 474 (557)
T ss_pred HHHH
Confidence 4433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=9e-07 Score=89.02 Aligned_cols=378 Identities=11% Similarity=0.001 Sum_probs=247.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHH
Q 008454 136 SSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDT 215 (565)
Q Consensus 136 ~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 215 (565)
+..+...|..+.-++.+.|+|..+.+.|++.+.- +-.....|+.+...|...|.-..|+.+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-------------------~~~~~e~w~~~als~saag~~s~Av~l 379 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-------------------SFGEHERWYQLALSYSAAGSDSKAVNL 379 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-------------------hhhhHHHHHHHHHHHHHhccchHHHHH
Confidence 3456778888888888888888888888877664 223456788888888888988888888
Q ss_pred HHHHHHCCCCc-CHHHHHHHHHHHHc-CCChHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHc-----------CC
Q 008454 216 FCQMRDYGFLP-IIESCNKFLSSLLD-SERVDIALGFYKEMRRN--RI--SPNVYTLNMVMHAFCKL-----------GI 278 (565)
Q Consensus 216 ~~~~~~~~~~p-~~~~~~~ll~~~~~-~~~~~~A~~~~~~m~~~--~~--~p~~~~~~~li~~~~~~-----------g~ 278 (565)
++.-......| +...+-..-..|.+ .+.+++++++-.+.... +. ......|..+.-+|... ..
T Consensus 380 l~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~ 459 (799)
T KOG4162|consen 380 LRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDAL 459 (799)
T ss_pred HHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHH
Confidence 88876654334 33444333344433 46666666666665541 11 11223333333333321 12
Q ss_pred HHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008454 279 IERAVEVFKNMESMGF-IPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFS 357 (565)
Q Consensus 279 ~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 357 (565)
..++++.+++..+.+. .|++..| +.--|+..++.+.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 4567777887776643 3444444 334466778899999999998887656688899988888888999999999888
Q ss_pred HHHhC-CCC------------------CCHHHHHHHHHHHHh------cC-----------------ChHHHHHHHHHH-
Q 008454 358 EMKAT-NVS------------------PNVVTYNTLINGYGQ------VG-----------------NSEMGASLYEEM- 394 (565)
Q Consensus 358 ~m~~~-~~~------------------~~~~~~~~li~~~~~------~g-----------------~~~~A~~~~~~m- 394 (565)
...+. |.. --..|...++..+-. .+ +..+|......+
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 76543 210 001122222222210 00 111111111110
Q ss_pred ---H----HCC---------C--CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008454 395 ---L----RNG---------I--KVD------ILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCV 450 (565)
Q Consensus 395 ---~----~~~---------~--~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 450 (565)
. ..| . .|+ ...|......+.+.+..++|...+.+...... -....|......+..
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEV 696 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHH
Confidence 0 001 0 011 12344556667778888888888887776532 256667777777888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 451 RKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAE--VLLEMLEKCMAPDSIILSELYSGLHHCGKDELAM 528 (565)
Q Consensus 451 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 528 (565)
.|..++|.+.|...+... +-+.....++...+.+.|+...|.. ++.++++.+.. +...|..+...+.+.|+.+.|.
T Consensus 697 ~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHH
Confidence 999999999999998764 4456788899999999999888888 99999998544 7889999999999999999999
Q ss_pred HHHHHHHHC
Q 008454 529 KLFRKMEIR 537 (565)
Q Consensus 529 ~~~~~m~~~ 537 (565)
+.|....+.
T Consensus 775 ecf~aa~qL 783 (799)
T KOG4162|consen 775 ECFQAALQL 783 (799)
T ss_pred HHHHHHHhh
Confidence 999977654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.2e-06 Score=79.02 Aligned_cols=270 Identities=10% Similarity=0.012 Sum_probs=198.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 008454 259 ISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPS-VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFN 337 (565)
Q Consensus 259 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 337 (565)
.+-|+.....+...+...|+.++|+..|++....+ |+ ........-.+.+.|+++....+...+.... .-....|-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 45678888899999999999999999999887642 22 2222233344567788888888877776542 12344455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 338 TLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEG 417 (565)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 417 (565)
.-........+++.|+.+-++..+.. +.+...|-.-...+...|+.++|.-.|+....... -+...|..|+.+|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhc
Confidence 55556667788999999998888764 44555666666778889999999999998887532 37789999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 008454 418 KTKKAAYLVKDLDKNSLVPNASTYSALI-TGQC-VRKNSERAFQLYKSMIRSGCRPN-KHIFEMLMSTFCQNEDFDRAAE 494 (565)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 494 (565)
++.+|..+-++..+. +.-+..+...+. ..+. ....-++|.++++..+.. .|+ ....+.+...+...|..+.+..
T Consensus 383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHH
Confidence 999998877766543 222555555442 2222 233357888888888765 455 3456777788889999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008454 495 VLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRG 538 (565)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 538 (565)
++++.+. ..||....+.|.+.+...+.+++|++.|......+
T Consensus 460 LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 460 LLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 9999877 46899999999999999999999999998876543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-07 Score=92.22 Aligned_cols=282 Identities=12% Similarity=0.065 Sum_probs=161.0
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008454 227 IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLIS 306 (565)
Q Consensus 227 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 306 (565)
++.....-..-+...+++.+..++++.+.+.. ++....+-.-|.++...|+..+-..+=.++.+.- +-...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 44555555566666666666666666665542 3344455555556666666665555555555542 224556666666
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCh
Q 008454 307 GHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKAT--NVSPNVVTYNTLINGYGQVGNS 384 (565)
Q Consensus 307 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~ 384 (565)
-|...|..++|.++|.+...... .-...|-.+...|.-.|..|.|+..+...-+. |.. .-+--+.--|.+.++.
T Consensus 321 YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h---lP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH---LPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc---chHHHHHHHHHHhccH
Confidence 66666666666666666554321 12445666666666666666666666555442 211 1122234445566666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC--CCHHHHHHHHHHHHhcCCHHHHH
Q 008454 385 EMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKN----SLV--PNASTYSALITGQCVRKNSERAF 458 (565)
Q Consensus 385 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~--p~~~~~~~li~~~~~~~~~~~A~ 458 (565)
+.|.+.|.+..... +-|+.+++.+.-.....+.+.+|..+|+..... +-+ -...+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 66666666666542 225566666666666666666666666655411 000 12334666666666667777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 459 QLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGL 518 (565)
Q Consensus 459 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 518 (565)
..++..+... +-+..++..+.-.|...|+++.|...|.+.+- +.|+-.+...++..+
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 7776666653 55666666666666666777777776666654 355555544444443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.1e-06 Score=83.89 Aligned_cols=401 Identities=14% Similarity=0.078 Sum_probs=229.7
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHH
Q 008454 118 KDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFD 197 (565)
Q Consensus 118 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (565)
+++..|++....++... +.+..++..-+-++...++|++|+.+++.-.... ..+.. +-
T Consensus 26 ~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-------------------~~~~~-~f 83 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-------------------VINSF-FF 83 (652)
T ss_pred hHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-------------------hcchh-hH
Confidence 47889998888888754 3566777777888889999999987665432210 00111 11
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
-=+.+..+.++.++|+..++-... .+..+...-...+.+.+++++|+++|+.+.+++.. .+..-+++-+-.
T Consensus 84 EKAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a- 154 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLA- 154 (652)
T ss_pred HHHHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHH-
Confidence 223344578899999998883322 23446666778888999999999999999876532 222222221110
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCChhHHHHHHHHHHHCC-------CCCCHH-------HHHHHH
Q 008454 278 IIERAVEVFKNMESMGFIPSVTTYNTL---ISGHCNKGLLSLAMKFKNLMEKNG-------IQPNVI-------TFNTLI 340 (565)
Q Consensus 278 ~~~~a~~~~~~m~~~g~~p~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g-------~~~~~~-------~~~~li 340 (565)
...+... +.+......| ..+|..+ ...+...|++.+|+++++...+.+ -.-+.. .-..+.
T Consensus 155 -~~a~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 155 -VAAALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA 231 (652)
T ss_pred -HHHhhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 0111111 1222222233 3344443 345567899999999999884322 111111 122344
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCChH-HHHHHHHHHH--------------------
Q 008454 341 FGFCKKGKLHEANRIFSEMKATNVSPNVVT----YNTLINGYGQVGNSE-MGASLYEEML-------------------- 395 (565)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~----~~~li~~~~~~g~~~-~A~~~~~~m~-------------------- 395 (565)
..+-..|+.++|..++....+.. .+|... -|.|+..-....-++ .++..++...
T Consensus 232 yVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 232 YVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred HHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 56778899999999999998875 455422 222222211111111 0111111000
Q ss_pred ---------------------HC-CCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008454 396 ---------------------RN-GIKVDILTYNALILGLCK--EGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVR 451 (565)
Q Consensus 396 ---------------------~~-~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 451 (565)
.. +..|. ..+..++..+.+ .....++.+++....+....-...+.-.++......
T Consensus 311 ~N~~lL~l~tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 311 RNNALLALFTNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc
Confidence 00 11111 223333333222 223556666666665543332344555666777889
Q ss_pred CCHHHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCH----HHHHHHHHH
Q 008454 452 KNSERAFQLYK--------SMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK--CMAPDS----IILSELYSG 517 (565)
Q Consensus 452 ~~~~~A~~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~----~~~~~li~~ 517 (565)
|+++.|++++. .+.+.+..| .+...++..+.+.++.+.|..++.+.+.. .-.+.. .++..+...
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 99999999998 444444334 44555666677777777777777766542 011112 234444445
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhcccCC
Q 008454 518 LHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAPENG 557 (565)
Q Consensus 518 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 557 (565)
-.+.|+.++|..+++++.+.. .+|..++..++.+++..+
T Consensus 468 ~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence 567799999999999998764 567888888888877654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.1e-08 Score=96.98 Aligned_cols=237 Identities=20% Similarity=0.164 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CC-CCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhC-----C--C
Q 008454 299 TTYNTLISGHCNKGLLSLAMKFKNLMEKN-----GI-QPNVITF-NTLIFGFCKKGKLHEANRIFSEMKAT-----N--V 364 (565)
Q Consensus 299 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~-----~--~ 364 (565)
.+...+...|...|+++.|..+++...+. |. .|...+. +.+...|...+++++|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666666666666666666554432 21 1222222 23556777778888888888777542 2 1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCC-CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CC
Q 008454 365 SPNVVTYNTLINGYGQVGNSEMGASLYEEMLRN-----GIK-VDI-LTYNALILGLCKEGKTKKAAYLVKDLDKN---SL 434 (565)
Q Consensus 365 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~ 434 (565)
+.-..+++.|...|++.|++++|...++...+- +.. +++ ..++.++..++..+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 112345666667788888888777777665432 111 122 23566777788888888888888765431 11
Q ss_pred CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 008454 435 VPN----ASTYSALITGQCVRKNSERAFQLYKSMIRS-----G--CRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK- 502 (565)
Q Consensus 435 ~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 502 (565)
.++ ..+++.|...|...|++++|.+++++++.. | ..-....++.+...|.+.+++.+|.++|.+...-
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 347899999999999999999999988864 1 1122456788888899999999998888776432
Q ss_pred ---CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 503 ---CM-APD-SIILSELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 503 ---~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
|. .|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 21 223 3578999999999999999999888765
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.3e-08 Score=96.89 Aligned_cols=238 Identities=21% Similarity=0.176 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHC-----CC-
Q 008454 263 VYTLNMVMHAFCKLGIIERAVEVFKNMESM-----GF-IPSVTT-YNTLISGHCNKGLLSLAMKFKNLMEKN-----GI- 329 (565)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~- 329 (565)
..+...+...|...|+++.|+.+++...+. |. .|...+ .+.+...|...+++++|..+|+++..- |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345556777777888888888777766543 21 122222 234667788888999998888887642 21
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHC----
Q 008454 330 -QPNVITFNTLIFGFCKKGKLHEANRIFSEMKAT-----NV-SPNV-VTYNTLINGYGQVGNSEMGASLYEEMLRN---- 397 (565)
Q Consensus 330 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 397 (565)
+.-..+++.|..+|++.|++++|...+++..+- |. .+.+ ..++.++..++..+++++|..++....+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 122456677778899999998888887766431 11 1222 23556777788889999999988876542
Q ss_pred -CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 398 -GIK--VDILTYNALILGLCKEGKTKKAAYLVKDLDKNS----LV--P-NASTYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 398 -~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~--p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
|.. --..+++.|...|...|++++|.++++.+.... .. + ....++.|...|.+.+++++|.++|.+...-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 124578999999999999999999999875421 11 1 2346788888899999999999998876542
Q ss_pred ----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 468 ----GC-RPN-KHIFEMLMSTFCQNEDFDRAAEVLLEML 500 (565)
Q Consensus 468 ----~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 500 (565)
|. .|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 21 222 4678999999999999999999988776
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.2e-07 Score=83.60 Aligned_cols=304 Identities=11% Similarity=-0.018 Sum_probs=218.8
Q ss_pred HHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc
Q 008454 147 LHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLP 226 (565)
Q Consensus 147 ~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 226 (565)
+.+.+..++...|..++-.+..... .+.+......+.+.+...|+.++|+..|++....++.
T Consensus 203 a~Aq~~~~~hs~a~~t~l~le~~~~-----------------lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy- 264 (564)
T KOG1174|consen 203 ALAQMFNFKHSDASQTFLMLHDNTT-----------------LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD- 264 (564)
T ss_pred HHHHHHhcccchhhhHHHHHHhhcc-----------------CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-
Confidence 3344445555555555544444322 4557888899999999999999999999999876533
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008454 227 IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLIS 306 (565)
Q Consensus 227 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 306 (565)
++...-.....+.+.|+.++...+...+.... .-....|..-.......++++.|+.+-++.++.... +...|-.-..
T Consensus 265 ~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~ 342 (564)
T KOG1174|consen 265 NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGR 342 (564)
T ss_pred hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccH
Confidence 34444445556677888888888888776532 123444555555566788999999999988876432 5556655557
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCh
Q 008454 307 GHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLI-NGYG-QVGNS 384 (565)
Q Consensus 307 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li-~~~~-~~g~~ 384 (565)
.+...|+.++|.-.|+..+... +-+...|.-|++.|...|++.+|.-.-+...+. ...+..+...+. ..+. ...--
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH
Confidence 7888999999999999888763 347889999999999999999998777765543 233455555442 2222 22344
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 385 EMGASLYEEMLRNGIKVD-ILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKS 463 (565)
Q Consensus 385 ~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 463 (565)
++|.++++...+. .|+ ....+.+...+...|+.+.+..+++..... .||....+.|...+...+.+++|++.|..
T Consensus 421 EKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 421 EKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred HHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 7899999888765 333 445677788888999999999999988764 68999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHH
Q 008454 464 MIRSGCRPNKHIFE 477 (565)
Q Consensus 464 m~~~~~~p~~~~~~ 477 (565)
+++.+ +.|..+..
T Consensus 497 ALr~d-P~~~~sl~ 509 (564)
T KOG1174|consen 497 ALRQD-PKSKRTLR 509 (564)
T ss_pred HHhcC-ccchHHHH
Confidence 98764 33444443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2e-07 Score=80.45 Aligned_cols=194 Identities=12% Similarity=0.089 Sum_probs=106.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 337 NTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKE 416 (565)
Q Consensus 337 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 416 (565)
..|.-.|...|++..|..-+++..+.. +.+..+|..+...|.+.|+.+.|.+.|++..+.... +..+.|.....+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence 334455566666666666666665543 334455555555566666666666666666554333 445555566666666
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008454 417 GKTKKAAYLVKDLDKNSLVP-NASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEV 495 (565)
Q Consensus 417 g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 495 (565)
|++++|...|++....-..+ -..+|..+..+..+.|+.+.|.+.|++.++.. +-...+...+.....+.|++-.|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 66666666666655432221 12355555555556666666666666666553 22334445555555566666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 496 LLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 496 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
++.....+. ++.......|+.-...|+.+.+-+.=.++
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 655555433 55555555555555566655555544444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-07 Score=89.15 Aligned_cols=217 Identities=12% Similarity=-0.035 Sum_probs=129.7
Q ss_pred hHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHH
Q 008454 120 YVLSLEFFTWVQTHKPSSL--TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFD 197 (565)
Q Consensus 120 ~~~al~~f~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (565)
.+.++.-+..++...+..+ ....|.....++...|++++|...+++.++. .|.++.+|+
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l-------------------~P~~~~a~~ 102 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL-------------------RPDMADAYN 102 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------------------CCCCHHHHH
Confidence 3455555555554333222 2345666777777788888888888777776 455677788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
.+...+...|++++|++.|++..+.... +..+|..+...+...|++++|++.|+...+.. |+..........+...+
T Consensus 103 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~ 179 (296)
T PRK11189 103 YLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKL 179 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccC
Confidence 8888888888888888888888775533 46677777777777888888888888877653 33222222222233456
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---C---CCCHHHHHHHHHHHHHcCCHHH
Q 008454 278 IIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNG---I---QPNVITFNTLIFGFCKKGKLHE 351 (565)
Q Consensus 278 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~---~~~~~~~~~li~~~~~~g~~~~ 351 (565)
+.++|.+.+.+..... .++...+ .......|+...+ +.+..+.+.. + +....+|..+...+.+.|++++
T Consensus 180 ~~~~A~~~l~~~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~ 254 (296)
T PRK11189 180 DPKQAKENLKQRYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDE 254 (296)
T ss_pred CHHHHHHHHHHHHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 7788887776544321 2222211 1222334555443 2344443211 0 0123456667777777777777
Q ss_pred HHHHHHHHHhCC
Q 008454 352 ANRIFSEMKATN 363 (565)
Q Consensus 352 A~~~~~~m~~~~ 363 (565)
|...|++..+.+
T Consensus 255 A~~~~~~Al~~~ 266 (296)
T PRK11189 255 AAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHhC
Confidence 777777776654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.7e-07 Score=79.55 Aligned_cols=197 Identities=13% Similarity=0.028 Sum_probs=116.4
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 143 HSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDY 222 (565)
Q Consensus 143 ~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 222 (565)
...+...+...|++..|..-+++.++. .|.+..+|..+...|-+.|+.+.|.+.|++....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~-------------------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl 98 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH-------------------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL 98 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-------------------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc
Confidence 334445555666666666666666665 4445566666666666666666666666666665
Q ss_pred CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008454 223 GFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNR-ISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTY 301 (565)
Q Consensus 223 ~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 301 (565)
... +..+.|.....+|..|++++|...|++....- ..--..+|..+.-+..++|+.+.|.+.|++..+.... ...+.
T Consensus 99 ~p~-~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~ 176 (250)
T COG3063 99 APN-NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPAL 176 (250)
T ss_pred CCC-ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHH
Confidence 433 55666666666666666666666666665431 1112345555555556666666666666666654322 23444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 302 NTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKA 361 (565)
Q Consensus 302 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 361 (565)
..+.....+.|++-.|..+++.....+. ++....-..|..--+.|+-+.+.++=..+..
T Consensus 177 l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 177 LELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4555666666666666666666665544 5555555556666666666665555544444
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-06 Score=84.80 Aligned_cols=202 Identities=11% Similarity=0.020 Sum_probs=122.3
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-cC-HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFL-PI-IESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNM 268 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 268 (565)
..+..|..+...+...|+.+.+.+.+....+.... .+ ..........+...|++++|.+.+++..+.. +.+...+..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~ 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH
Confidence 34566777777777778888877777766543321 12 2223333445566788888888888877653 223333332
Q ss_pred HHHHHH----HcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008454 269 VMHAFC----KLGIIERAVEVFKNMESMGFIPS-VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGF 343 (565)
Q Consensus 269 li~~~~----~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 343 (565)
...+. ..+..+.+.+.++.. .+..|+ ......+...+...|++++|...+++..+.. +.+...+..+...+
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 11222 234445555554441 122233 3334455567777888888888888887764 23456677777788
Q ss_pred HHcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 344 CKKGKLHEANRIFSEMKATNV-SPNV--VTYNTLINGYGQVGNSEMGASLYEEMLRN 397 (565)
Q Consensus 344 ~~~g~~~~A~~~~~~m~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 397 (565)
...|++++|...+++...... .++. ..|..+...+...|++++|..++++....
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 888888888888887765421 1222 23446667777788888888888877543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.8e-07 Score=86.96 Aligned_cols=216 Identities=12% Similarity=0.024 Sum_probs=99.1
Q ss_pred ChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 008454 243 RVDIALGFYKEMRRNR-ISPN--VYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMK 319 (565)
Q Consensus 243 ~~~~A~~~~~~m~~~~-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 319 (565)
+.+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|++..+.... +...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 4444555555544321 1111 233445555555566666666666655554322 45555556666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008454 320 FKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGI 399 (565)
Q Consensus 320 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 399 (565)
.+++..+... -+..+|..+..++...|++++|++.++...+.. |+..........+...++.++|...|.+.....
T Consensus 120 ~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 6666555421 134455555555556666666666666655542 222111111112233445566666665443321
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 400 KVDILTYNALILGLCKEGKTKKAAYLVKDLDKN---SL--VP-NASTYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 400 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~--~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
.++...+ .......|+...+ ..+..+.+. .. .| ....|..+...+.+.|++++|+..|++.++.
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1121111 1122223333322 122222211 00 00 1234555555566666666666666666554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.1e-06 Score=83.66 Aligned_cols=204 Identities=11% Similarity=-0.028 Sum_probs=136.0
Q ss_pred CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 139 TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (565)
....|..+...+...++.+.+...+....+.... ..............+...|++++|.+.+++
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~ 68 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAA----------------RATERERAHVEALSAWIAGDLPKALALLEQ 68 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc----------------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455666666666667777766666555544211 111122223334566778999999999999
Q ss_pred HHHCCCCcCHHHHHH---HHHHHHcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 219 MRDYGFLPIIESCNK---FLSSLLDSERVDIALGFYKEMRRNRISPN-VYTLNMVMHAFCKLGIIERAVEVFKNMESMGF 294 (565)
Q Consensus 219 ~~~~~~~p~~~~~~~---ll~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 294 (565)
..+.... +...+.. ........+..+.+.+.+... ....|+ ......+...+...|++++|.+.+++..+...
T Consensus 69 ~l~~~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p 145 (355)
T cd05804 69 LLDDYPR-DLLALKLHLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP 145 (355)
T ss_pred HHHHCCC-cHHHHHHhHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9886533 4444442 112222245555565555541 122233 34555666788899999999999999998753
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 295 IPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGI-QPNV--ITFNTLIFGFCKKGKLHEANRIFSEMKAT 362 (565)
Q Consensus 295 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 362 (565)
. +...+..+..++...|++++|...+++...... .++. ..|..+...+...|++++|..++++....
T Consensus 146 ~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 146 D-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred C-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 3 567788889999999999999999998887532 1232 34556788899999999999999998643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-05 Score=78.35 Aligned_cols=377 Identities=12% Similarity=0.078 Sum_probs=217.1
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHH
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLV 195 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (565)
....|+.|+.+.+.-.... ....-+..-+.++.+.+..++|...+..+-+ .+..+
T Consensus 58 q~~ky~~ALk~ikk~~~~~---~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~----------------------~~~~l 112 (652)
T KOG2376|consen 58 QLDKYEDALKLIKKNGALL---VINSFFFEKAYCEYRLNKLDEALKTLKGLDR----------------------LDDKL 112 (652)
T ss_pred hhhHHHHHHHHHHhcchhh---hcchhhHHHHHHHHHcccHHHHHHHHhcccc----------------------cchHH
Confidence 3457899986665322111 0111112335667788999999998873222 24556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHH---HHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLP-IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLN---MVMH 271 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~---~li~ 271 (565)
...-...+.+.|++++|+++|+.+.+.+..- +...-..++.+-. +... +.+......| ..+|. ....
T Consensus 113 l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-------~l~~-~~~q~v~~v~-e~syel~yN~Ac 183 (652)
T KOG2376|consen 113 LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-------ALQV-QLLQSVPEVP-EDSYELLYNTAC 183 (652)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------hhhH-HHHHhccCCC-cchHHHHHHHHH
Confidence 6777889999999999999999998866541 1111111111111 1111 0122222222 22333 3334
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC-------------CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH--
Q 008454 272 AFCKLGIIERAVEVFKNMESMG-------------FIPSVTT-YNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVIT-- 335 (565)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~~~g-------------~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-- 335 (565)
.+...|++.+|+++++...+.+ +.-...+ -.-|..++...|+.++|..++...++... +|...
T Consensus 184 ~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~A 262 (652)
T KOG2376|consen 184 ILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLA 262 (652)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHH
Confidence 5567889999999988873211 0101111 12245567778999999998888877643 23211
Q ss_pred --HHHHHHHHHH---------------------------------------------cCCHHHHHHHHHHHHhCCCCCCH
Q 008454 336 --FNTLIFGFCK---------------------------------------------KGKLHEANRIFSEMKATNVSPNV 368 (565)
Q Consensus 336 --~~~li~~~~~---------------------------------------------~g~~~~A~~~~~~m~~~~~~~~~ 368 (565)
-|.++..-.. .+..+.+.++-... .+..|.
T Consensus 263 v~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l--p~~~p~- 339 (652)
T KOG2376|consen 263 VAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL--PGMSPE- 339 (652)
T ss_pred HHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC--CccCch-
Confidence 1222111000 00001111111000 011222
Q ss_pred HHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhCCCCCCH
Q 008454 369 VTYNTLINGYGQ--VGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVK--------DLDKNSLVPNA 438 (565)
Q Consensus 369 ~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~ 438 (565)
..+.+++..+.+ ...+.++..++....+....-...+.-.++......|+++.|.+++. .+.+.+..|-
T Consensus 340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~- 418 (652)
T KOG2376|consen 340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG- 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh-
Confidence 334444443332 22466777777777766444345677778888899999999999999 5555555444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008454 439 STYSALITGQCVRKNSERAFQLYKSMIRS--GCRPN----KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILS 512 (565)
Q Consensus 439 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (565)
+...+...+.+.++-+.|..++.+.+.. .-.+. ..++..+...-.+.|+.++|..+++++.+. .++|..+..
T Consensus 419 -~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~ 496 (652)
T KOG2376|consen 419 -TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLV 496 (652)
T ss_pred -HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHH
Confidence 4455666677777777777777777642 00111 123444444456789999999999999986 467889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 008454 513 ELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 513 ~li~~~~~~g~~~~A~~~~~~m 534 (565)
.++.+|++. +.+.|..+-+.+
T Consensus 497 ~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 497 QLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHhc-CHHHHHHHhhcC
Confidence 999999885 677777766554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-06 Score=83.82 Aligned_cols=405 Identities=10% Similarity=0.014 Sum_probs=245.5
Q ss_pred HHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCC
Q 008454 112 VLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDS 191 (565)
Q Consensus 112 ~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (565)
....-.+|+..|+..|..++.-.| ++...|..-..+++..+++++|.+=-.+.++. +|.
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l-------------------~p~ 68 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRL-------------------NPD 68 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhc-------------------CCc
Confidence 344567899999999999988766 46677889999999999999998877777666 666
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHH---HHHHHHHHHC---CCCCCHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIA---LGFYKEMRRN---RISPNVYT 265 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A---~~~~~~m~~~---~~~p~~~~ 265 (565)
.+..|.....++.-.|++++|+..|.+-++.... +...++-+..++.......+. -.++..+... ........
T Consensus 69 w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~ 147 (539)
T KOG0548|consen 69 WAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPA 147 (539)
T ss_pred hhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHH
Confidence 7889999999999999999999999999887643 556666666666211000000 0011111000 00001112
Q ss_pred HHHHHHHHHHc-------CCHHHHHHHHHHHHh--------C-------CCCC----------------------CHHHH
Q 008454 266 LNMVMHAFCKL-------GIIERAVEVFKNMES--------M-------GFIP----------------------SVTTY 301 (565)
Q Consensus 266 ~~~li~~~~~~-------g~~~~a~~~~~~m~~--------~-------g~~p----------------------~~~~~ 301 (565)
|..++..+-+. .......+....+.. . +..| -..-.
T Consensus 148 ~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 148 YVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 22222221110 011111111111110 0 0111 01123
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------H
Q 008454 302 NTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNT-------L 374 (565)
Q Consensus 302 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-------l 374 (565)
..+..+..+..+++.+.+-+....... -+..-++....+|...|.+.++...-+...+.|- -...-|+. +
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHh
Confidence 445666667777788887777777654 3555556666778888877777766666555441 11222222 3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008454 375 INGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNS 454 (565)
Q Consensus 375 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 454 (565)
..+|.+.++++.++..|.+.......|+. ..+....+++....+.....+... ..--..-...+.+.|++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCH
Confidence 33555667778888888876655444332 122333444444444433322221 11112225667788999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 455 ERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 455 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
..|++.|.+++... +-|...|....-+|.+.|.+..|+.-.+..++.+ ++....|.-=..++....+++.|.+.|.+-
T Consensus 375 ~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998875 6677888888889999999999988887777752 222334444455666667888888888888
Q ss_pred HHCCCCCCHhhHHHHHhhccc
Q 008454 535 EIRGLLPKGFDKLRTINCAPE 555 (565)
Q Consensus 535 ~~~g~~p~~~~~~~ll~~~~~ 555 (565)
.+.+ |+...+...++-|..
T Consensus 453 le~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 453 LELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HhcC--chhHHHHHHHHHHHH
Confidence 7765 676666666655554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.1e-07 Score=83.03 Aligned_cols=391 Identities=14% Similarity=0.132 Sum_probs=220.0
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHH
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLV 195 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (565)
.-+||+.|+..+..+.... .++.+..-.++-+..-.|.+.+|..+-.+..+. +.-
T Consensus 69 hLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~-----------------------pL~ 123 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT-----------------------PLC 123 (557)
T ss_pred hhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC-----------------------hHH
Confidence 3479999999999887743 345666666777777789999998887665443 223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVM-HAFC 274 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~~ 274 (565)
-..|+..-.+.++-++-..+-+.+.+ ..+---++.......-.+++|+++|......+ |+-...|..+ -+|.
T Consensus 124 ~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyy 196 (557)
T KOG3785|consen 124 IRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYY 196 (557)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHH
Confidence 33333444444444444443333332 11222223333333334555555555554431 2333333222 2333
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH------------------------------HHhc-----CChhHHHH
Q 008454 275 KLGIIERAVEVFKNMESMGFIPSVTTYNTLISG------------------------------HCNK-----GLLSLAMK 319 (565)
Q Consensus 275 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~------------------------------~~~~-----g~~~~a~~ 319 (565)
+..-++-+.++++-..+. ++-+....|..... .++. ..-+.|++
T Consensus 197 KlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALq 275 (557)
T KOG3785|consen 197 KLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQ 275 (557)
T ss_pred hcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHH
Confidence 444445555554444332 11122222222222 2221 12234444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------ChHHHHHHHH
Q 008454 320 FKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVG-------NSEMGASLYE 392 (565)
Q Consensus 320 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~ 392 (565)
++--+.+. -+.+-..|+--|.+.++..+|..+.+++.- .++.-|-.-.-.+...| ...-|.+.|.
T Consensus 276 VLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffq 347 (557)
T KOG3785|consen 276 VLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQ 347 (557)
T ss_pred hchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Confidence 44433332 122334556678899999999998877642 23333322222233333 3445555665
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008454 393 EMLRNGIKVDI-LTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRP 471 (565)
Q Consensus 393 ~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 471 (565)
-.-+.+..-|. .--..+..++.-..++++++..+..+...-..-|...|| +.++++..|++.+|.++|-.+....++.
T Consensus 348 lVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn 426 (557)
T KOG3785|consen 348 LVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKN 426 (557)
T ss_pred HhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhh
Confidence 55444443332 223456666677778999999999888765554554444 6788999999999999998877554443
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 008454 472 NKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSII-LSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTI 550 (565)
Q Consensus 472 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 550 (565)
+..-...|..+|.+++..+.|..++-++ +-..+... ...+..-|.+++.+--|.+.|+.+... .|+...|..--
T Consensus 427 ~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWeGKR 501 (557)
T KOG3785|consen 427 KILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWEGKR 501 (557)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccCCcc
Confidence 3333456677889999999997766443 33334443 445567888999999999999998655 46665554433
Q ss_pred hhc
Q 008454 551 NCA 553 (565)
Q Consensus 551 ~~~ 553 (565)
-+|
T Consensus 502 GAC 504 (557)
T KOG3785|consen 502 GAC 504 (557)
T ss_pred chH
Confidence 333
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.9e-07 Score=79.73 Aligned_cols=291 Identities=14% Similarity=0.134 Sum_probs=186.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLN-MVMHAFC 274 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~ 274 (565)
|++++..+.+..++.+|++++..-.++..+ +......+..+|....++..|-+.|+++-.. .|...-|. .-...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 566677777888889999888888777643 6677778888888888888888888888664 34443332 2334566
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008454 275 KLGIIERAVEVFKNMESMGFIPSVTTYNTLI--SGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEA 352 (565)
Q Consensus 275 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 352 (565)
+.+.+.+|+++...|.+. ++...-..-+ ......+++..+..++++....| +..+.+.......+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 778888888888888753 2221111111 22345677777887777766432 445555555666788888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-------------CHH---------------
Q 008454 353 NRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKV-------------DIL--------------- 404 (565)
Q Consensus 353 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-------------~~~--------------- 404 (565)
.+-|+...+-+---....|+..+. ..+.|+++.|+++..+++++|++- |+.
T Consensus 164 vqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 888888877543444566765554 456788888888888888776531 211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKN-SLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTF 483 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (565)
.+|.-...+.+.|+++.|.+.+-.|.-+ .-..|++|...+.-.- ..+++-+..+-+.-+++.+ +-...||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 1222233445778888888888777422 1223555554433221 2344445555555555544 34457788888888
Q ss_pred HhcCCHHHHHHHHHH
Q 008454 484 CQNEDFDRAAEVLLE 498 (565)
Q Consensus 484 ~~~g~~~~A~~~~~~ 498 (565)
|++.-++.|..++.+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 888888888777644
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-05 Score=89.47 Aligned_cols=337 Identities=11% Similarity=-0.030 Sum_probs=205.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC------CCC--HHHHHHHHHH
Q 008454 201 KTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRI------SPN--VYTLNMVMHA 272 (565)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~------~p~--~~~~~~li~~ 272 (565)
..+...|++..+..+++.+.......+..........+...|+++++..++....+.-- .+. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34556677777777776653221111222333444555677899999888887654210 111 1122223344
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHH
Q 008454 273 FCKLGIIERAVEVFKNMESMGFIPS----VTTYNTLISGHCNKGLLSLAMKFKNLMEKN----GIQ-PNVITFNTLIFGF 343 (565)
Q Consensus 273 ~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~ 343 (565)
+...|++++|...+++..+.-...+ ....+.+...+...|++++|...+++.... |.. ....++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 5678999999999988765311112 133455666777899999999888877642 111 1123445566778
Q ss_pred HHcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHH
Q 008454 344 CKKGKLHEANRIFSEMKAT----NVS--P-NVVTYNTLINGYGQVGNSEMGASLYEEMLRN----GIKVDILTYNALILG 412 (565)
Q Consensus 344 ~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~~ 412 (565)
...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999988876542 211 1 1233445566677789999999888877553 111123344556667
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHH
Q 008454 413 LCKEGKTKKAAYLVKDLDKNSLVP-NASTY-----SALITGQCVRKNSERAFQLYKSMIRSGCRPN---KHIFEMLMSTF 483 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~-----~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~ 483 (565)
+...|+.++|...+..+....... ....+ ...+..+...|+.+.|...+........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 788999999998888774421100 11111 1122334557888888888777554221111 11134566677
Q ss_pred HhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 484 CQNEDFDRAAEVLLEMLEK----CMAPD-SIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
...|++++|...++++... |...+ ..++..+..++.+.|+.++|...+.+..+.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8889999999999887653 22222 235666777888999999999998888755
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-05 Score=80.05 Aligned_cols=375 Identities=13% Similarity=0.004 Sum_probs=247.5
Q ss_pred ChHHHHHHH--HhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHH
Q 008454 105 TPFRVKHVL--LKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSI 182 (565)
Q Consensus 105 ~~~~~~~~l--~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~ 182 (565)
++....++. +.+.+++..+-+.|+.+..-. -...+.|..+...+...|.-..|..+++.......
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~--~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~----------- 388 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFS--FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE----------- 388 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--hhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc-----------
Confidence 344444432 455678888888998776532 24678899999999999999999999988776521
Q ss_pred HHhcccCCCChHHHHHHHHHHHh-cCChHHHHHHHHHHHHC--CCC--cCHHHHHHHHHHHHcC-----------CChHH
Q 008454 183 LYSYRMCDSSPLVFDLLFKTYAH-RKKFRNATDTFCQMRDY--GFL--PIIESCNKFLSSLLDS-----------ERVDI 246 (565)
Q Consensus 183 ~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~--~~~--p~~~~~~~ll~~~~~~-----------~~~~~ 246 (565)
.++++..+-..-+.|.+ .|.++++++.-.++... +.. .....|..+.-+|... ....+
T Consensus 389 ------~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~k 462 (799)
T KOG4162|consen 389 ------QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKK 462 (799)
T ss_pred ------CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHH
Confidence 23344444344444443 46677777766666551 111 1344555555554321 12446
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008454 247 ALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEK 326 (565)
Q Consensus 247 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 326 (565)
+++.+++..+.+.. |......+.--|+..++++.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+....
T Consensus 463 slqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 463 SLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 78888888776533 22333334445678889999999999999886666899999999999999999999998886654
Q ss_pred C-CCC------------------CCHHHHHHHHHHHHH---------cC--------------CHHHHHHHHHHHH----
Q 008454 327 N-GIQ------------------PNVITFNTLIFGFCK---------KG--------------KLHEANRIFSEMK---- 360 (565)
Q Consensus 327 ~-g~~------------------~~~~~~~~li~~~~~---------~g--------------~~~~A~~~~~~m~---- 360 (565)
. |.. ....|...++..+-. .| +..+|.+....+.
T Consensus 542 E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a 621 (799)
T KOG4162|consen 542 EFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA 621 (799)
T ss_pred HhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH
Confidence 2 210 001122222222110 00 1111111111100
Q ss_pred ----hCC---------CC--CC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008454 361 ----ATN---------VS--PN------VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKT 419 (565)
Q Consensus 361 ----~~~---------~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 419 (565)
..| +. |+ ...|......+.+.+..++|...+.+..+.. ......|......+...|..
T Consensus 622 ~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 622 SQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred hhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhh
Confidence 000 00 11 1224445566677788888887777776653 34677888888888999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008454 420 KKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQ--LYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLL 497 (565)
Q Consensus 420 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 497 (565)
++|...|......+.. ++....++...+.+.|+..-|.. ++.++++.+ +-+...|..+...+.+.|+.+.|.+.|+
T Consensus 701 ~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 701 EEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 9999999998876543 56688899999999999888888 999999987 6788999999999999999999999999
Q ss_pred HHHHc
Q 008454 498 EMLEK 502 (565)
Q Consensus 498 ~~~~~ 502 (565)
...+.
T Consensus 779 aa~qL 783 (799)
T KOG4162|consen 779 AALQL 783 (799)
T ss_pred HHHhh
Confidence 88765
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-06 Score=77.28 Aligned_cols=291 Identities=15% Similarity=0.112 Sum_probs=186.6
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 143 HSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDY 222 (565)
Q Consensus 143 ~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 222 (565)
+...+.-+.+..++.+|.+++....+. .+.+......|..+|....++..|-+.|+++...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er-------------------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql 73 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER-------------------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL 73 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc-------------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556677778889999999999887776 3446667888999999999999999999999774
Q ss_pred CCCcCHHHHHH-HHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008454 223 GFLPIIESCNK-FLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHA--FCKLGIIERAVEVFKNMESMGFIPSVT 299 (565)
Q Consensus 223 ~~~p~~~~~~~-ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~ 299 (565)
- |...-|.. -...+.+.+.+.+|+.+...|... ++...-..-+.+ ....+|+..+..++++....| +..
T Consensus 74 ~--P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad 145 (459)
T KOG4340|consen 74 H--PELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EAD 145 (459)
T ss_pred C--hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccc
Confidence 4 54444433 357778889999999999888643 222211111222 224677778888887776432 444
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-------------C
Q 008454 300 TYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVS-------------P 366 (565)
Q Consensus 300 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------------~ 366 (565)
+.+.......+.|+++.|.+-|+...+-|---....|+..+ +..+.|+++.|+++..++.++|+. +
T Consensus 146 ~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi 224 (459)
T KOG4340|consen 146 GQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI 224 (459)
T ss_pred hhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC
Confidence 55555555667888888888888776654333455666544 445667888888888888776532 1
Q ss_pred CH---------------HHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 367 NV---------------VTYNTLINGYGQVGNSEMGASLYEEMLRN-GIKVDILTYNALILGLCKEGKTKKAAYLVKDLD 430 (565)
Q Consensus 367 ~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 430 (565)
|. ..+|.-...+.+.|+++.|.+.+-+|.-+ ....|+.|...+.-.-. .+++.+..+-+.-+.
T Consensus 225 DvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL 303 (459)
T KOG4340|consen 225 DVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLL 303 (459)
T ss_pred chhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHH
Confidence 21 11222223345677888888777777532 23446666554433222 233444444444444
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 431 KNSLVPNASTYSALITGQCVRKNSERAFQLYKS 463 (565)
Q Consensus 431 ~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 463 (565)
+.+.- ...||..++-.||++.-++.|-+++.+
T Consensus 304 ~~nPf-P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 304 QQNPF-PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 44443 345777777778888777777776654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-07 Score=89.19 Aligned_cols=252 Identities=13% Similarity=0.089 Sum_probs=150.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGII 279 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 279 (565)
++-+.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++... -.|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccch
Confidence 345566788888887666 333332234555666778888888877544 333333 256666665555444433444
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008454 280 ERAVEVFKNMESMGFIPSVTTYN-TLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSE 358 (565)
Q Consensus 280 ~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 358 (565)
+.++.-+++....+...+..++. .....+...|++++|++++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555554443333222222332 2334566678888888877642 3566777778888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 359 MKATNVSPNVVTYNTLINGYGQ----VGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSL 434 (565)
Q Consensus 359 m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 434 (565)
|.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+.
T Consensus 157 ~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 87653 23344444444432 23678888888887654 456777788888888888888888888888776554
Q ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 008454 435 VPNASTYSALITGQCVRKNS-ERAFQLYKSMIRS 467 (565)
Q Consensus 435 ~p~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~ 467 (565)
. +..+...++.+....|+. +.+.+++.++...
T Consensus 233 ~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 N-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred C-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 3 555666666666666665 5566677776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.2e-05 Score=77.69 Aligned_cols=385 Identities=16% Similarity=0.166 Sum_probs=215.3
Q ss_pred cCCChhHHhhhccCCChHHHHHHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhc
Q 008454 90 IHSDWKKLTALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDS 169 (565)
Q Consensus 90 ~~~~~~~l~~~~~~l~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~ 169 (565)
+...|+.+.+....-....|..|-+-.-++...|. ..+.+++.. + +.-...+-.....|..++|..++++..+
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaR-AlR~a~q~~----~-e~eakvAvLAieLgMlEeA~~lYr~ckR- 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGAR-ALRRAQQNG----E-EDEAKVAVLAIELGMLEEALILYRQCKR- 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHH-HHHHHHhCC----c-chhhHHHHHHHHHhhHHHHHHHHHHHHH-
Confidence 34567666665443333333333222222222232 233444322 1 2223334444577888999988887655
Q ss_pred CCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHH
Q 008454 170 DSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALG 249 (565)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~ 249 (565)
|+.|=+.|-..|.|++|+++-+.-.+-. --.+|......+...++.+.|++
T Consensus 829 --------------------------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 829 --------------------------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred --------------------------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHH
Confidence 3345566667788888888766543322 23456666666777777777777
Q ss_pred HHHHH----------HHCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008454 250 FYKEM----------RRNR---------ISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCN 310 (565)
Q Consensus 250 ~~~~m----------~~~~---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 310 (565)
.|++. .... -..|...|......+-..|+.+.|+.+|....+ |-.+++..|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 77652 1110 012334444444455567888888888876653 5567777888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----------
Q 008454 311 KGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQ---------- 380 (565)
Q Consensus 311 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---------- 380 (565)
.|+.++|-++-++-. |..+...+...|-..|++.+|...|.+... |...|+.|-.
T Consensus 951 qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nl 1015 (1416)
T KOG3617|consen 951 QGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANL 1015 (1416)
T ss_pred ccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHH
Confidence 888888888766532 556666788888888999999888877653 2233332211
Q ss_pred ---c--CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------HHhCC--CCCCHHHHHHHH
Q 008454 381 ---V--GNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKD--------LDKNS--LVPNASTYSALI 445 (565)
Q Consensus 381 ---~--g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~~--~~p~~~~~~~li 445 (565)
. .+.-.|-++|++.- .. +...+..|-+.|.+.+|+++--+ ++..+ ..-|+...+...
T Consensus 1016 al~s~~~d~v~aArYyEe~g---~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rca 1087 (1416)
T KOG3617|consen 1016 ALMSGGSDLVSAARYYEELG---GY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCA 1087 (1416)
T ss_pred HhhcCchhHHHHHHHHHHcc---hh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHH
Confidence 1 12223333443321 11 12344556777777777665322 12222 233566677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCH----HHHHHHHHHHHh
Q 008454 446 TGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEML-EKCMAPDS----IILSELYSGLHH 520 (565)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~p~~----~~~~~li~~~~~ 520 (565)
.-++...++++|..++-...+ |...+. +|+..+..-..++-+.|. .++-.|+. .++..+...|.+
T Consensus 1088 dFF~~~~qyekAV~lL~~ar~---------~~~Alq-lC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1088 DFFENNQQYEKAVNLLCLARE---------FSGALQ-LCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred HHHHhHHHHHHHHHHHHHHHH---------HHHHHH-HHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence 777778888888877766543 222222 233444333333333332 11122333 356667778888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhcccCCCccC
Q 008454 521 CGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAPENGEKES 561 (565)
Q Consensus 521 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 561 (565)
+|.+..|-+=|-+.-+ ....+++..++||.++
T Consensus 1158 QG~Yh~AtKKfTQAGd---------Kl~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1158 QGAYHAATKKFTQAGD---------KLSAMRALLKSGDTQK 1189 (1416)
T ss_pred ccchHHHHHHHhhhhh---------HHHHHHHHHhcCCcce
Confidence 8888888776655422 2345666777777664
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.8e-05 Score=85.24 Aligned_cols=309 Identities=11% Similarity=0.030 Sum_probs=200.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC------CcC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH---
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGF------LPI--IESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNV--- 263 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~p~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~--- 263 (565)
........+...|++++|...++...+.-. .+. ......+...+...|++++|...+++..+.-...+.
T Consensus 411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (903)
T PRK04841 411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR 490 (903)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH
Confidence 334445566778999999999988754311 111 122233345566789999999999998763211222
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCC--C
Q 008454 264 -YTLNMVMHAFCKLGIIERAVEVFKNMESM----GFI-PSVTTYNTLISGHCNKGLLSLAMKFKNLMEK----NGIQ--P 331 (565)
Q Consensus 264 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~--~ 331 (565)
...+.+...+...|++++|...+++.... |.. ....++..+...+...|++++|...+++... .|.. +
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 24455666778899999999999887643 111 1123455567788899999999998887654 2221 1
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHH
Q 008454 332 -NVITFNTLIFGFCKKGKLHEANRIFSEMKATN--VSP--NVVTYNTLINGYGQVGNSEMGASLYEEMLRNG--IKVDIL 404 (565)
Q Consensus 332 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~ 404 (565)
....+..+...+...|++++|...+.+..... ..+ ....+..+...+...|+.+.|...+....... ......
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~ 650 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD 650 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence 22334555667788899999999998875531 111 23344456667788999999999998875421 111110
Q ss_pred --HH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-
Q 008454 405 --TY--NALILGLCKEGKTKKAAYLVKDLDKNSLVPNA---STYSALITGQCVRKNSERAFQLYKSMIRS----GCRPN- 472 (565)
Q Consensus 405 --~~--~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~- 472 (565)
.. ...+..+...|+.+.|..++............ ..+..+..++...|+.++|...+.+.... |...+
T Consensus 651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 11 11224455688999999998776542211111 12345667788899999999999988763 32221
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008454 473 KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKC 503 (565)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 503 (565)
..+...+..++.+.|+.++|...+.++.+..
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 2456667778889999999999999998764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.9e-05 Score=67.95 Aligned_cols=302 Identities=11% Similarity=0.019 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 140 LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQM 219 (565)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 219 (565)
.+-..-+...+...|++.+|+.-+...++. .+.+-.++..-...|...|+...|+.-+.+.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~-------------------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rV 98 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG-------------------DPNNYQAIFRRATVYLAMGKSKAALQDLSRV 98 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC-------------------CchhHHHHHHHHHHHhhhcCCccchhhHHHH
Confidence 334444555555666666666666555544 1111122222334555566666666666666
Q ss_pred HHCCCCcCHHH-HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC--HHH------------HHHHHHHHHHcCCHHHHHH
Q 008454 220 RDYGFLPIIES-CNKFLSSLLDSERVDIALGFYKEMRRNRISPN--VYT------------LNMVMHAFCKLGIIERAVE 284 (565)
Q Consensus 220 ~~~~~~p~~~~-~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~------------~~~li~~~~~~g~~~~a~~ 284 (565)
.+. +||... --.-...+.+.|.++.|..-|+.+++....-+ ... ....+..+...|+...|+.
T Consensus 99 lel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 99 LEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred Hhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHH
Confidence 553 244322 12223445566666666666666655422100 011 1122333445567777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 285 VFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNV 364 (565)
Q Consensus 285 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 364 (565)
....+.+..+ -|...|..-..+|...|++..|+.-++...+..- -+..++--+-..+...|+.+.++..+++..+.
T Consensus 177 ~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl-- 252 (504)
T KOG0624|consen 177 MITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL-- 252 (504)
T ss_pred HHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--
Confidence 7777666532 2666666666777777777777666555554432 24555555666666777777777777666654
Q ss_pred CCCHHH----HHHH---------HHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008454 365 SPNVVT----YNTL---------INGYGQVGNSEMGASLYEEMLRNGIKVDI---LTYNALILGLCKEGKTKKAAYLVKD 428 (565)
Q Consensus 365 ~~~~~~----~~~l---------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~ 428 (565)
.||.-. |..+ +......+++.++.+-.+...+....... ..+..+..++...|++.+|+..-.+
T Consensus 253 dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 253 DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 333321 1111 11223445555555555555554332111 2233444555556666667666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 429 LDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 429 ~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
+.+.... |+.++.--..+|.-...++.|+.-|+.+.+.
T Consensus 333 vL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 333 VLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 6653211 3555555566666666666666666666654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.4e-05 Score=79.98 Aligned_cols=285 Identities=11% Similarity=0.086 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008454 141 ETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMR 220 (565)
Q Consensus 141 ~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 220 (565)
..|....+.+.+..+.+-..+++.+ . -+.-+.+.|+++.+--....+|.--...++++...+-+.+-+++++++.
T Consensus 937 SlfK~~aRYlv~R~D~~LW~~VL~e---~--n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIv 1011 (1666)
T KOG0985|consen 937 SLFKSQARYLVERSDPDLWAKVLNE---E--NPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIV 1011 (1666)
T ss_pred hHHHHHHHHHHhccChHHHHHHHhc---c--ChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 3566667777777776655444432 1 1223567777777654455678888889999999999999999999986
Q ss_pred HCCC--CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------
Q 008454 221 DYGF--LPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM------ 292 (565)
Q Consensus 221 ~~~~--~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------ 292 (565)
-.+- .-+...-|.++-...+.. ...+.+..+++...+. |+ +...+...+-+++|..+|++....
T Consensus 1012 L~~S~Fse~~nLQnLLiLtAikad-~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~V 1083 (1666)
T KOG0985|consen 1012 LDNSVFSENRNLQNLLILTAIKAD-RTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQV 1083 (1666)
T ss_pred cCCcccccchhhhhhHHHHHhhcC-hHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHH
Confidence 4321 112333444544444433 3344455555433211 11 112223334445555555443210
Q ss_pred ----------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008454 293 ----------------GFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIF 356 (565)
Q Consensus 293 ----------------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 356 (565)
.+ -....|..+..+-.+.|...+|.+-|-+. -|+..|..+++...+.|.|++-.+++
T Consensus 1084 Lie~i~~ldRA~efAe~~-n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1084 LIENIGSLDRAYEFAERC-NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred HHHHhhhHHHHHHHHHhh-CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 00 13344555555555666655555444321 24556666666666667776666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008454 357 SEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVP 436 (565)
Q Consensus 357 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 436 (565)
...++..-.|... +.||-+|++.++..+..+.+ .-|+......+.+-|...|.++.|.-++.
T Consensus 1157 ~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------- 1218 (1666)
T KOG0985|consen 1157 LMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS--------- 1218 (1666)
T ss_pred HHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH---------
Confidence 6555544333332 35566666666655544332 13455555666666666666666665555
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 437 NASTYSALITGQCVRKNSERAFQLYKS 463 (565)
Q Consensus 437 ~~~~~~~li~~~~~~~~~~~A~~~~~~ 463 (565)
+...|..|...+...|+++.|.+.-++
T Consensus 1219 ~vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1219 NVSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444577777777777777776654443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-05 Score=76.41 Aligned_cols=214 Identities=14% Similarity=0.103 Sum_probs=142.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSE-RVDIALGFYKEMRRNRISPNVYTLNMVMHAFC 274 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 274 (565)
++.+-..+...++.++|+.+.+++.+.+.. +..+|+.....+...| .+++++..++++.+...+ +..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 333444445557888888888888886643 5667777767777777 578888888888776433 5556665544455
Q ss_pred HcCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCH
Q 008454 275 KLGII--ERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKK---GKL 349 (565)
Q Consensus 275 ~~g~~--~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~ 349 (565)
+.|+. ++++.+++++.+...+ |..+|+...-++.+.|+++++++.++++++.+.. |..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 55653 6678888888776544 7788888888888888888888888888887644 666776666555544 222
Q ss_pred ----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 350 ----HEANRIFSEMKATNVSPNVVTYNTLINGYGQV----GNSEMGASLYEEMLRNGIKVDILTYNALILGLCK 415 (565)
Q Consensus 350 ----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 415 (565)
++.++...++.... +-|...|+.+...+... +...+|...+.+..+.++. +......|++.|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 45666665665543 45666777776666652 3345577777776654432 56666777777764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.00015 Score=75.46 Aligned_cols=355 Identities=13% Similarity=0.088 Sum_probs=175.7
Q ss_pred CCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhc-CCCCCcHHHHHHHHHhcccCCCC----------hHHHHHHHHHHHh
Q 008454 137 SLTLETHSIVLHILTKNRKFKSSESILRGILDS-DSFDLPSKLFDSILYSYRMCDSS----------PLVFDLLFKTYAH 205 (565)
Q Consensus 137 ~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~li~~~~~ 205 (565)
..+++.-...+.++-..+-..+..+++++++-. ..+...+.+-+-++-+.-...++ ..--..+......
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~ 1060 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIE 1060 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhh
Confidence 345566666666666666667777777666533 23333333333322221111110 0001123344455
Q ss_pred cCChHHHHHHHHHHHHCC---------------------CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH
Q 008454 206 RKKFRNATDTFCQMRDYG---------------------FLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVY 264 (565)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~---------------------~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 264 (565)
++-+++|..+|++..-.+ -.-....|..+..+-.+.|.+.+|++-|-+. .|..
T Consensus 1061 ~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps 1134 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPS 1134 (1666)
T ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcH
Confidence 555666666665543200 0012334444555555555555554444221 1344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 265 TLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFC 344 (565)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 344 (565)
.|..++....+.|.+++-.+.+....+..-+|.+.+ .|+-+|++.++..+..+++. .||......+.+-|.
T Consensus 1135 ~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf 1205 (1666)
T KOG0985|consen 1135 NYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCF 1205 (1666)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHh
Confidence 455555555555555555555544444433333332 34445555555444333221 244444444445555
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 345 KKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAY 424 (565)
Q Consensus 345 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 424 (565)
..|.++.|.-+|... ..|..|...+...|+++.|.+.-++. -+..+|..+..+|...+.+.-|
T Consensus 1206 ~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-- 1268 (1666)
T KOG0985|consen 1206 EEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-- 1268 (1666)
T ss_pred hhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH--
Confidence 555555544444322 23445555555556665555433322 2456666666666655544333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C
Q 008454 425 LVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK-C 503 (565)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~ 503 (565)
+|-..++.....-...++..|-.+|-+++.+.+++..+... ......|+.|.-.|.+- ++++..+.++-.-.+ +
T Consensus 1269 ---QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvN 1343 (1666)
T KOG0985|consen 1269 ---QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVN 1343 (1666)
T ss_pred ---HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcc
Confidence 33333344455567788888888999998888888766432 34456677777666654 344444444333222 1
Q ss_pred CC------CCHHHHHHHHHHHHhcCCHHHHH
Q 008454 504 MA------PDSIILSELYSGLHHCGKDELAM 528 (565)
Q Consensus 504 ~~------p~~~~~~~li~~~~~~g~~~~A~ 528 (565)
++ -....|+.+.-.|.+-..+|.|.
T Consensus 1344 ipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1344 IPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 11 12245667766676666666553
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-05 Score=76.54 Aligned_cols=209 Identities=10% Similarity=0.002 Sum_probs=155.2
Q ss_pred HHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCc
Q 008454 148 HILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRK-KFRNATDTFCQMRDYGFLP 226 (565)
Q Consensus 148 ~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p 226 (565)
.++...+..++|+.+..++++. .|.+..+|+....++...| ++++++..++++.+.+.+
T Consensus 45 a~l~~~e~serAL~lt~~aI~l-------------------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk- 104 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRL-------------------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK- 104 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH-------------------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-
Confidence 3445567788888888888876 4445566766666777777 689999999999987765
Q ss_pred CHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008454 227 IIESCNKFLSSLLDSERV--DIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTL 304 (565)
Q Consensus 227 ~~~~~~~ll~~~~~~~~~--~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 304 (565)
+..+|+...-.+.+.|+. ++++.+++.+.+... -|..+|+...-++...|+++++++.++++++.+.. |..+|+..
T Consensus 105 nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R 182 (320)
T PLN02789 105 NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQR 182 (320)
T ss_pred chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHH
Confidence 677788776666666653 678999999987653 47889998888888999999999999999988765 77788777
Q ss_pred HHHHHhc---CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008454 305 ISGHCNK---GLL----SLAMKFKNLMEKNGIQPNVITFNTLIFGFCKK----GKLHEANRIFSEMKATNVSPNVVTYNT 373 (565)
Q Consensus 305 i~~~~~~---g~~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~ 373 (565)
...+.+. |.. ++.+.+...++... +-|...|+-+...+... +...+|.+.+.+..+.+ ..+......
T Consensus 183 ~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~ 260 (320)
T PLN02789 183 YFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSD 260 (320)
T ss_pred HHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHH
Confidence 6666554 222 46677776776654 34778888887777763 44567888888876654 456677778
Q ss_pred HHHHHHh
Q 008454 374 LINGYGQ 380 (565)
Q Consensus 374 li~~~~~ 380 (565)
|+..|+.
T Consensus 261 l~d~~~~ 267 (320)
T PLN02789 261 LLDLLCE 267 (320)
T ss_pred HHHHHHh
Confidence 8888875
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.4e-07 Score=85.97 Aligned_cols=250 Identities=9% Similarity=0.047 Sum_probs=114.8
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 008454 236 SSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLS 315 (565)
Q Consensus 236 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 315 (565)
+-+.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 33444566666665444 222211122334455566666666655432 2332222 445444444433332223333
Q ss_pred HHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 316 LAMKFKNLMEKNGIQPNVITF-NTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEM 394 (565)
Q Consensus 316 ~a~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 394 (565)
.+..-++.....+...+..++ ......+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333322222212111122 22223444556666666665432 23445555666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008454 395 LRNGIKVDILTYNALILGLCK----EGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCR 470 (565)
Q Consensus 395 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 470 (565)
.+.+ .| .+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.. +
T Consensus 158 ~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 5532 12 233333333332 22466666666665543 33455566666666666666666666666665543 3
Q ss_pred CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 008454 471 PNKHIFEMLMSTFCQNEDF-DRAAEVLLEMLE 501 (565)
Q Consensus 471 p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~ 501 (565)
-+..+...++.+....|+. +.+.+++.++..
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 3444555555555555555 445555555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.00015 Score=70.48 Aligned_cols=127 Identities=15% Similarity=0.198 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSLVP-NASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFC 484 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (565)
|..+++...+..-+..|..+|.++.+.+..+ ++..+++++.-+| .++.+-|.++|+--+.+ +.-+..--...+.-+.
T Consensus 369 ~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 369 YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLS 446 (656)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHH
Confidence 3444444444444445555555554444433 3334444444332 33444455555444333 1112222233344444
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 485 QNEDFDRAAEVLLEMLEKCMAPDS--IILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
..++-..|..+|++.+..++.+|. .+|..++.--..-|+...+.++-+++
T Consensus 447 ~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 444444555555555444333332 34555555444555555555554444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.3e-05 Score=68.16 Aligned_cols=301 Identities=13% Similarity=0.015 Sum_probs=178.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHH
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTL-NMVMHA 272 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~ 272 (565)
.-.--+...+...|++.+|+.-|....+.+.. +-.++..-...|...|+...|+.-+...++. +||-..- -.-...
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence 33445677777888888888888888774422 3334444456777788888888888887764 5664322 122334
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHH------------HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 273 FCKLGIIERAVEVFKNMESMGFIP--SVTTYNT------------LISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNT 338 (565)
Q Consensus 273 ~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~------------li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 338 (565)
+.++|.+++|..-|+.+.+....- ....+.. .+..+.-.|+...|+.....+.+-. +-|...|..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 667888888888888888763221 1111111 2233445677777777777776653 346666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH----HHH-----
Q 008454 339 LIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTY----NAL----- 409 (565)
Q Consensus 339 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~----~~l----- 409 (565)
-..+|...|++..|+.-++...+.. .-+..++.-+-..++..|+.+.++...++..+. .||.... ..|
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHH
Confidence 6777777777777776666655543 334555556666677777777777777777664 3443322 111
Q ss_pred ----HHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008454 410 ----ILGLCKEGKTKKAAYLVKDLDKNSLVPNAS---TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMST 482 (565)
Q Consensus 410 ----i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 482 (565)
+......+++.++..-.+...+........ .+..+-.++...+++.+|++.-.+.++.. +-|..++---..+
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHH
Confidence 112233455555555555555543321122 23334445555666677776666666542 2235666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 008454 483 FCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~ 502 (565)
|.-...++.|+.-|+.+.+.
T Consensus 351 ~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhc
Confidence 66666677777777666664
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00035 Score=68.14 Aligned_cols=400 Identities=13% Similarity=0.120 Sum_probs=212.8
Q ss_pred CCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 008454 137 SLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTF 216 (565)
Q Consensus 137 ~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 216 (565)
+.+..+|..++.-+.-. ..+++++.+++++.. .+..+..|..-|+.-...++++....+|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-------------------FP~s~r~W~~yi~~El~skdfe~VEkLF 76 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-------------------FPSSPRAWKLYIERELASKDFESVEKLF 76 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-------------------CCCCcHHHHHHHHHHHHhhhHHHHHHHH
Confidence 35778888888876554 888888888888776 5667788888888888888888888888
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHcCC-Ch----HHHHHHHHHH-HHCCCCCC-HHHHHHHHHH---------HHHcCCHH
Q 008454 217 CQMRDYGFLPIIESCNKFLSSLLDSE-RV----DIALGFYKEM-RRNRISPN-VYTLNMVMHA---------FCKLGIIE 280 (565)
Q Consensus 217 ~~~~~~~~~p~~~~~~~ll~~~~~~~-~~----~~A~~~~~~m-~~~~~~p~-~~~~~~li~~---------~~~~g~~~ 280 (565)
.+.+..- .+...|...+..-.+.+ .. +...+.|+-. .+.|+.+- -..|+..+.. |..+.+++
T Consensus 77 ~RCLvkv--LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~ 154 (656)
T KOG1914|consen 77 SRCLVKV--LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRIT 154 (656)
T ss_pred HHHHHHH--hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHH
Confidence 8877644 24666666665544332 11 1222333332 23343322 2234433332 33344566
Q ss_pred HHHHHHHHHHhCCCCC------CHHHHHHHHHH-------HHhcCChhHHHHHHHHHHH--CCCCCCHH-----------
Q 008454 281 RAVEVFKNMESMGFIP------SVTTYNTLISG-------HCNKGLLSLAMKFKNLMEK--NGIQPNVI----------- 334 (565)
Q Consensus 281 ~a~~~~~~m~~~g~~p------~~~~~~~li~~-------~~~~g~~~~a~~~~~~m~~--~g~~~~~~----------- 334 (565)
...++|+++....+.- |-.+|..=|.. --+...+..|.++++++.. .|+..+..
T Consensus 155 ~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~ 234 (656)
T KOG1914|consen 155 AVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEI 234 (656)
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHH
Confidence 7777777776432210 11111111111 1123355566666665542 23221111
Q ss_pred ----HHHHHHHHHHHcC------C--HHHHHHHHHHHH-hCCCCCCHHH-HHHH----HHHHHhcCC-------hHHHHH
Q 008454 335 ----TFNTLIFGFCKKG------K--LHEANRIFSEMK-ATNVSPNVVT-YNTL----INGYGQVGN-------SEMGAS 389 (565)
Q Consensus 335 ----~~~~li~~~~~~g------~--~~~A~~~~~~m~-~~~~~~~~~~-~~~l----i~~~~~~g~-------~~~A~~ 389 (565)
.|..+|.-=-.++ . -....-++++.. -.+..|+.-. |... -+.+...|+ .+++..
T Consensus 235 ~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~ 314 (656)
T KOG1914|consen 235 QQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAAS 314 (656)
T ss_pred HHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHH
Confidence 1433333211111 0 011222222221 1222232211 0000 111222222 356666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 390 LYEEMLRNGIKVDILTYNALILGLCKEG---KTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 390 ~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 466 (565)
+++.....-..-+..+|..+...--..- ..+....+++++...-..--..+|..+++.-.+...+..|..+|.++.+
T Consensus 315 ~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~ 394 (656)
T KOG1914|consen 315 IYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE 394 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 7766665433335555555544322222 2455555666554432221223567777777777777778888888877
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--
Q 008454 467 SGCRP-NKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKG-- 543 (565)
Q Consensus 467 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-- 543 (565)
.+..+ +..++.+++.-+| .++.+-|.++|+--+.+ ...+...-...++.+.+.|+-..|+.+|++....++.||.
T Consensus 395 ~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~ 472 (656)
T KOG1914|consen 395 DKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSK 472 (656)
T ss_pred ccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhH
Confidence 66555 5666777777666 46777777777665554 3334444456677777777777788888877777655543
Q ss_pred hhHHHHHhhcccCCCcc
Q 008454 544 FDKLRTINCAPENGEKE 560 (565)
Q Consensus 544 ~~~~~ll~~~~~~g~~~ 560 (565)
..|..+|.-=..-||.+
T Consensus 473 ~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 473 EIWDRMLEYESNVGDLN 489 (656)
T ss_pred HHHHHHHHHHHhcccHH
Confidence 46777766555555543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.9e-06 Score=81.99 Aligned_cols=253 Identities=14% Similarity=0.069 Sum_probs=186.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008454 272 AFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHE 351 (565)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 351 (565)
-+.+.|++.+|.-.|+..++.... +...|.-|.......++-..|+..+++..+... -|..+.-.|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHH
Confidence 356789999999999998887544 788899999999999999999999999988753 377888888888999999999
Q ss_pred HHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008454 352 ANRIFSEMKATNVS--------PNVVTYNTLINGYGQVGNSEMGASLYEEML-RNGIKVDILTYNALILGLCKEGKTKKA 422 (565)
Q Consensus 352 A~~~~~~m~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A 422 (565)
|++.++.-.....+ .+...-.. ..+.....+....++|-++. ..+..+|..+...|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999887654210 00000000 11112222334445555444 445557888888898889999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 423 AYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNK-HIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 423 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
.+.|+.+...... |...||.|...++...+.++|+..|.++++. .|+. .+...|.-+|...|.+++|...|-.++.
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999886544 7789999999999999999999999999986 5663 3444566688899999999998877654
Q ss_pred cC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 502 KC---------MAPDSIILSELYSGLHHCGKDELAMKLF 531 (565)
Q Consensus 502 ~~---------~~p~~~~~~~li~~~~~~g~~~~A~~~~ 531 (565)
.. ..++..+|..|-.++...++.|.+.+..
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 31 1223457888877787788877555443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4e-06 Score=81.90 Aligned_cols=89 Identities=11% Similarity=0.072 Sum_probs=56.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008454 201 KTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIE 280 (565)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 280 (565)
.-+.+.|++.+|.-.|+.....++. +.++|..|...-...++-..|+..+++..+... -|....-.|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHH
Confidence 3455667777777777777666544 666777777666666666667776666665532 24555566666666666666
Q ss_pred HHHHHHHHHHh
Q 008454 281 RAVEVFKNMES 291 (565)
Q Consensus 281 ~a~~~~~~m~~ 291 (565)
+|++.++..+.
T Consensus 371 ~Al~~L~~Wi~ 381 (579)
T KOG1125|consen 371 QALKMLDKWIR 381 (579)
T ss_pred HHHHHHHHHHH
Confidence 66666666654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.2e-08 Score=58.28 Aligned_cols=32 Identities=28% Similarity=0.517 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 503 CMAPDSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 503 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
|+.||..+|+.||++||+.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-05 Score=79.69 Aligned_cols=238 Identities=15% Similarity=0.128 Sum_probs=169.6
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008454 225 LPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTL 304 (565)
Q Consensus 225 ~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 304 (565)
+|--..-..+...+...|-...|+.+|+++. .|.-+|.+|+..|+..+|..+..+..++ +||...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3444455667777888888888888887764 4666778888888888888888877763 5788888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008454 305 ISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNS 384 (565)
Q Consensus 305 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 384 (565)
.+......-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.. +.-..+|..+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88777777778888877764432 22222233344688888888888776654 44566777777778888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 385 EMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSM 464 (565)
Q Consensus 385 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 464 (565)
+.|.+.|......... +...||.+-.+|.+.++..+|...+.+..+.+.. +...|...+....+.|.+++|++.+.++
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 8888888888775332 5678888888899888888898888888887643 5556666677777888888888888887
Q ss_pred HHcC-CCCCHHHHHHHHHHH
Q 008454 465 IRSG-CRPNKHIFEMLMSTF 483 (565)
Q Consensus 465 ~~~~-~~p~~~~~~~li~~~ 483 (565)
.... -.-|..+...++...
T Consensus 614 l~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHhhhhcccchhhHHHHHHH
Confidence 7531 112444444444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.3e-05 Score=81.34 Aligned_cols=226 Identities=11% Similarity=0.088 Sum_probs=150.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008454 297 SVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQP-----NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTY 371 (565)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 371 (565)
+...|-..|......++.++|.++.++.... +.+ -...|.++++.-...|.-+...++|+++.+.- -....|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 3556777777777778888888887777643 111 13456666666666677777778888777642 223456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 008454 372 NTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVP-NASTYSALITGQCV 450 (565)
Q Consensus 372 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~ 450 (565)
..|...|.+.+..++|.++++.|.+. ..-....|...+..+.+.++-++|..++.++.+.-..- ........+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 77777788888888888888888776 22356677777888888888788888887776642211 22344445555567
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHH
Q 008454 451 RKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSI--ILSELYSGLHHCGKDELA 527 (565)
Q Consensus 451 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A 527 (565)
.|+.+.+..+|+..+..- +--...|+.+++.-.++|+.+.+..+|++++..++.|-.. .|...+..--..|+-+.+
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 788888888888777652 3445678888888888888888888888888777665443 455555544455554443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.4e-08 Score=57.61 Aligned_cols=32 Identities=34% Similarity=0.736 Sum_probs=15.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008454 258 RISPNVYTLNMVMHAFCKLGIIERAVEVFKNM 289 (565)
Q Consensus 258 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 289 (565)
|+.||..+|+.||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.0011 Score=67.80 Aligned_cols=130 Identities=11% Similarity=0.044 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHH------HhcccCCCChHHHHHHHHHHHhcCChHH
Q 008454 138 LTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSIL------YSYRMCDSSPLVFDLLFKTYAHRKKFRN 211 (565)
Q Consensus 138 ~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~li~~~~~~g~~~~ 211 (565)
|-..+|...+..|-..++.+.|++.+++.-.. +..++.-+. ..|.....++..|.-....+-..|+.+.
T Consensus 856 HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~h-----afev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 856 HLRNTYYNYAKYLEARRDIEAALEYYEKAGVH-----AFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred ehhhhHHHHHHHHHhhccHHHHHHHHHhcCCh-----HHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHH
Confidence 45678888899999999999999998864321 222222221 2233344566677777777778899999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008454 212 ATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFK 287 (565)
Q Consensus 212 A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 287 (565)
|+.+|....+ |..+++..|-.|+.++|-++-++- -|......+.+.|-..|++.+|...|.
T Consensus 931 Al~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 931 ALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred HHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9998887665 233334444444444444443321 133333444444444444444444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.7e-05 Score=81.69 Aligned_cols=236 Identities=13% Similarity=0.036 Sum_probs=184.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 008454 262 NVYTLNMVMHAFCKLGIIERAVEVFKNMESM-GFIP---SVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFN 337 (565)
Q Consensus 262 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 337 (565)
....|-..|......++.++|.++.++.... ++.- -...|.++++.-..-|.-+...++|++..+.. -.-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3567888888889999999999999998754 2211 23457777777777788889999999998862 2356688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHc
Q 008454 338 TLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIK-VDILTYNALILGLCKE 416 (565)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~ 416 (565)
.|...|.+.+++++|.++++.|.+.- .-....|...+..+.+..+-+.|..++.+..+.-.+ -........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 89999999999999999999998862 246678999999999999999999999998875222 1345566677777899
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHH
Q 008454 417 GKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNK--HIFEMLMSTFCQNEDFDRAAE 494 (565)
Q Consensus 417 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~ 494 (565)
|+.+.+..+|+.......+ ....|+..|..-.++|+.+.+..+|++.+..++.|-. ..|...+..=-..|+-+.++.
T Consensus 1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 9999999999998876444 6678999999999999999999999999998877653 456666665556677666666
Q ss_pred HHHHHHH
Q 008454 495 VLLEMLE 501 (565)
Q Consensus 495 ~~~~~~~ 501 (565)
+=.++.+
T Consensus 1693 VKarA~E 1699 (1710)
T KOG1070|consen 1693 VKARAKE 1699 (1710)
T ss_pred HHHHHHH
Confidence 5555443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.3e-05 Score=78.76 Aligned_cols=215 Identities=14% Similarity=0.081 Sum_probs=159.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008454 302 NTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQV 381 (565)
Q Consensus 302 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 381 (565)
..+...+...|-..+|..+++++. .|..++.+|+..|+..+|..+..+..++ +||...|..+++.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 446667777888888888888654 4556788888889888888888877773 78888888888877777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 382 GNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLY 461 (565)
Q Consensus 382 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~ 461 (565)
.-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+.- ...+|-.+..+..+.++++.|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHH
Confidence 7778888887765432 1122222233467888888888877665432 5567777777778888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 462 KSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 462 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
..-+... +-+...||.+-.+|.+.++-.+|...+.++.+.+ .-+..+|...+....+.|.+++|.+.+.++.+.
T Consensus 543 ~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 543 HRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 8887753 3446778888888888888888888888888876 335566777777788888888888888887643
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00017 Score=70.19 Aligned_cols=355 Identities=13% Similarity=0.069 Sum_probs=209.3
Q ss_pred HHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc
Q 008454 147 LHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLP 226 (565)
Q Consensus 147 ~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 226 (565)
.++....|+++.|..+|-+.+.. .|++-..|..-..+|+..|++++|++=-.+-++....
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l-------------------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~- 68 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIML-------------------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD- 68 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHcc-------------------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-
Confidence 45566789999999999988877 5567778888899999999999999887777775532
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhC---CCCCCHHH
Q 008454 227 IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG---IIERAVEVFKNMESM---GFIPSVTT 300 (565)
Q Consensus 227 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~---g~~p~~~~ 300 (565)
-...|.....++.-.|++++|+.-|.+-++.. +.|...++.+..++.... +.-.--.++..+... ........
T Consensus 69 w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~ 147 (539)
T KOG0548|consen 69 WAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPA 147 (539)
T ss_pred hhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHH
Confidence 46889999999999999999999999987764 335667777776662110 000000111111110 00011122
Q ss_pred HHHHHHHHHhc-------CChhHHHHHHHHHH--------HCC-------CCC----------------------CHHHH
Q 008454 301 YNTLISGHCNK-------GLLSLAMKFKNLME--------KNG-------IQP----------------------NVITF 336 (565)
Q Consensus 301 ~~~li~~~~~~-------g~~~~a~~~~~~m~--------~~g-------~~~----------------------~~~~~ 336 (565)
|..++..+-+. ...+...+..-.+. ..| ..| -..-.
T Consensus 148 ~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 148 YVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 33333222211 01111111111110 000 011 01123
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-------HH
Q 008454 337 NTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYN-------AL 409 (565)
Q Consensus 337 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-------~l 409 (565)
..+.++..+..+++.|++-+....+.. -+..-++....+|...|.+......-+...+.|.. ...-|+ .+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 445566666667777777777666553 34444455555666666666666655555554432 122222 23
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCC
Q 008454 410 ILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNK-HIFEMLMSTFCQNED 488 (565)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~ 488 (565)
..+|.+.++++.|...|.+.......|+. ..+....+++.+......-. .|.. .-...-...+.+.|+
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccC
Confidence 33555566677777777665443323222 11223344444444433322 2222 112222556788999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 489 FDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
+..|...+.+++.+. +-|...|....-+|.+.|.+..|+.-.+...+.
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 999999999999985 557889999999999999999999988877666
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00017 Score=75.08 Aligned_cols=389 Identities=12% Similarity=0.043 Sum_probs=208.7
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHH
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLV 195 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (565)
.+++...|+..|-.+.+..+ .-...|..+.+++....+...|...|++..+. .+.+...
T Consensus 470 ~rK~~~~al~ali~alrld~--~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL-------------------Datdaea 528 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDV--SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL-------------------DATDAEA 528 (1238)
T ss_pred hhhhHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------------Cchhhhh
Confidence 34566677777776666543 23467888888888877888888888877766 3446666
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGF-LPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFC 274 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 274 (565)
.....+.|++..+++.|..+.-..-+... ..-...|..+.-.|.+.++...|..-|+...+..+ -|...|..++.+|.
T Consensus 529 aaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~ 607 (1238)
T KOG1127|consen 529 AAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYP 607 (1238)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHH
Confidence 77778888888888888777333222111 01122344455556677777788888877766543 36677888888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHc
Q 008454 275 KLGIIERAVEVFKNMESMGFIPSVTTYNT--LISGHCNKGLLSLAMKFKNLMEKNG------IQPNVITFNTLIFGFCKK 346 (565)
Q Consensus 275 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~ 346 (565)
+.|.+..|.++|.+..... |+. .|.. .....|..|.+.+++..+......- ..--..++-.+...+.-.
T Consensus 608 ~sGry~~AlKvF~kAs~Lr--P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~ 684 (1238)
T KOG1127|consen 608 ESGRYSHALKVFTKASLLR--PLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAIT 684 (1238)
T ss_pred hcCceehHHHhhhhhHhcC--cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 8888888888887776542 322 2221 2234566777888777776654321 000112222222222222
Q ss_pred CCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH--H-H---HH-HHHHHHHCCCC------------
Q 008454 347 GKL-------HEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSE--M-G---AS-LYEEMLRNGIK------------ 400 (565)
Q Consensus 347 g~~-------~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~-A---~~-~~~~m~~~~~~------------ 400 (565)
|-. +++++.|.-........+...|-.+..+|.-.-..+ . . .. ++.+....+.-
T Consensus 685 gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c 764 (1238)
T KOG1127|consen 685 GFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYEC 764 (1238)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHH
Confidence 222 223333222222211222222222222221100000 0 0 00 01111111111
Q ss_pred --------CCHHHHHHHHHHHHH----c----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 401 --------VDILTYNALILGLCK----E----GKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSM 464 (565)
Q Consensus 401 --------~~~~~~~~li~~~~~----~----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 464 (565)
.+..+|..++..|.+ . .+...|...++...+..-. +..+|+.|.-. ...|++.-|...|-.-
T Consensus 765 ~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks 842 (1238)
T KOG1127|consen 765 GIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKS 842 (1238)
T ss_pred hhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhh
Confidence 122333333333332 1 1233566666666554322 55666666554 4456666666666655
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 465 IRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRK 533 (565)
Q Consensus 465 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 533 (565)
.... +....+|..+...+.+..+++-|...|....... +.+...|--........|+.-++..+|..
T Consensus 843 ~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 843 RFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 5543 4455667777777778888888888888776642 22444444433344456777777777765
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.2e-05 Score=76.02 Aligned_cols=265 Identities=17% Similarity=0.187 Sum_probs=145.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
..|+.|.+.|.+.+|......=.. +..|......+..++.+..-+++|-++|+.+..- ...+.+|-+..
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fkkgd 688 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFKKGD 688 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHHccc
Confidence 356778888888777664322111 2235566666666666666666666666655321 11111121111
Q ss_pred CHHHHHHHHHHH----------------HhCCCCCC--------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 008454 278 IIERAVEVFKNM----------------ESMGFIPS--------VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNV 333 (565)
Q Consensus 278 ~~~~a~~~~~~m----------------~~~g~~p~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 333 (565)
-+.+|+++-+-. ...| ..| ....-..+.+....+.+.+|+.+++.+++... -.
T Consensus 689 af~kaielarfafp~evv~lee~wg~hl~~~~-q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~--~s 765 (1636)
T KOG3616|consen 689 AFGKAIELARFAFPEEVVKLEEAWGDHLEQIG-QLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKT--AS 765 (1636)
T ss_pred HHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH-hHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--cc
Confidence 122222221110 0000 000 00111233445556677777777777776532 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008454 334 ITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGL 413 (565)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 413 (565)
.-|..+.+-|...|+++.|.++|.+.- .++-.|..|.+.|+++.|.++-++... .......|.+-..-+
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedl 834 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDL 834 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhH
Confidence 445666677888888888888775532 245567788888888888877666543 344556666666666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 414 CKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAA 493 (565)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 493 (565)
-++|++.+|.+++-.+.. |+ ..|..|-+.|..+..+++..+-... --..|...+..-+...|+...|.
T Consensus 835 dehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae 902 (1636)
T KOG3616|consen 835 DEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAE 902 (1636)
T ss_pred HhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHH
Confidence 777777777777654432 33 3456666777777666665543211 11234455555666667777766
Q ss_pred HHHHHH
Q 008454 494 EVLLEM 499 (565)
Q Consensus 494 ~~~~~~ 499 (565)
.-|-+.
T Consensus 903 ~~flea 908 (1636)
T KOG3616|consen 903 EHFLEA 908 (1636)
T ss_pred HHHHhh
Confidence 655443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.8e-05 Score=70.13 Aligned_cols=165 Identities=12% Similarity=-0.011 Sum_probs=100.9
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008454 190 DSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMV 269 (565)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 269 (565)
+.+..+ ..+-..+.-.|+-+.+..+.......... |....+..+....+.|++..|...+.+..... ++|...|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence 334444 45556666666666666666665443322 55555556666677777777777777665432 4566677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008454 270 MHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKL 349 (565)
Q Consensus 270 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 349 (565)
.-+|.+.|++++|..-|.+..+.-.. +...++.+.-.+.-.|+.+.|..++......+. .|..+-..+.......|++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCCh
Confidence 77777777777777776666655322 444555666666666777777777666665542 2555556666666666777
Q ss_pred HHHHHHHHHH
Q 008454 350 HEANRIFSEM 359 (565)
Q Consensus 350 ~~A~~~~~~m 359 (565)
++|..+...-
T Consensus 219 ~~A~~i~~~e 228 (257)
T COG5010 219 REAEDIAVQE 228 (257)
T ss_pred HHHHhhcccc
Confidence 7766665443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.0021 Score=66.71 Aligned_cols=222 Identities=12% Similarity=0.074 Sum_probs=130.3
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHH
Q 008454 118 KDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFD 197 (565)
Q Consensus 118 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (565)
++++.|+.-...+.+..|......++.. -.+.+.|+.++|..+++.....+ +.|..+..
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLka--Lsl~r~gk~~ea~~~Le~~~~~~-------------------~~D~~tLq 81 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKA--LSLFRLGKGDEALKLLEALYGLK-------------------GTDDLTLQ 81 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHH--HHHHHhcCchhHHHHHhhhccCC-------------------CCchHHHH
Confidence 4677777777777776654333333333 33457788888887777655442 23666777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
.+-.+|...|+.++|+.+|+...... |+.+....+..+|.+.+.+.+-.+.--+|-+. .+-+.+.+=.++......-
T Consensus 82 ~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 82 FLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSI 158 (932)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhc
Confidence 77788888888888888888887755 56777777777777777765533333333222 2223444434444433321
Q ss_pred ----------CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHH
Q 008454 278 ----------IIERAVEVFKNMESMG-FIPSVTTYNTLISGHCNKGLLSLAMKFKN-LMEKNGIQPNVITFNTLIFGFCK 345 (565)
Q Consensus 278 ----------~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~~~~~~~~~li~~~~~ 345 (565)
-..-|.+.++.+.+.+ -.-+..-.......+...|++++|++++. ...+.-...+...-+.-++.+..
T Consensus 159 ~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 159 FSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL 238 (932)
T ss_pred cCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1233555666665543 22222223333445566777888888773 33333233344444555677777
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 008454 346 KGKLHEANRIFSEMKATN 363 (565)
Q Consensus 346 ~g~~~~A~~~~~~m~~~~ 363 (565)
.++|.+..++-.++...|
T Consensus 239 l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKG 256 (932)
T ss_pred hcChHHHHHHHHHHHHhC
Confidence 777777777777777665
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.9e-05 Score=71.64 Aligned_cols=188 Identities=11% Similarity=-0.008 Sum_probs=127.3
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-c-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH--HHH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFL-P-IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNV--YTL 266 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~ 266 (565)
.....+..++..+...|++++|...|+++...... | ...++..+...+...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35567778888999999999999999999876532 1 1256788889999999999999999999875432111 244
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 267 NMVMHAFCKL--------GIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNT 338 (565)
Q Consensus 267 ~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 338 (565)
..+..++... |+.++|.+.++.+.+.... +...+..+..... ... .. ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------HHHHHH
Confidence 4444555544 6788899999888765322 2222222211100 000 00 011124
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 339 LIFGFCKKGKLHEANRIFSEMKATN--VSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRN 397 (565)
Q Consensus 339 li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 397 (565)
+...+.+.|++++|+..++...+.. .+.....+..+..++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5567888999999999999887752 1223567888889999999999999988888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.0001 Score=65.33 Aligned_cols=250 Identities=10% Similarity=0.051 Sum_probs=138.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGII 279 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 279 (565)
++-+.-.|.+..++..-....... -++..-..+-++|...|++.....- ++. |-.|.......+-......+..
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchh
Confidence 344555677777776655544332 2444444555677777765544322 211 1123333333333333223333
Q ss_pred HHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008454 280 ERA-VEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSE 358 (565)
Q Consensus 280 ~~a-~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 358 (565)
++- .++.+.+......-+......-...|+..|++++|++...... +......=+..+.+..+++-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2344444444333333333334456777888888887776521 333333334556667777888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 359 MKATNVSPNVVTYNTLINGYGQ----VGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSL 434 (565)
Q Consensus 359 m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 434 (565)
|.+.. +..+.+.|..++.+ .+.+..|.-+|++|-++ ..|+..+.+....++...|++++|..++++......
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 87642 55566666665543 34677777777777764 556777777777777777777777777777776654
Q ss_pred CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 008454 435 VPNASTYSALITGQCVRKN-SERAFQLYKSMIR 466 (565)
Q Consensus 435 ~p~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~ 466 (565)
. ++.+...+|..-...|. .+...+.+.++..
T Consensus 239 ~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 K-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 4 45555444444434443 3333444455444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.3e-05 Score=77.92 Aligned_cols=133 Identities=10% Similarity=0.028 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008454 367 NVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALIT 446 (565)
Q Consensus 367 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 446 (565)
+...+..|.....+.|.+++|..+++...+.... +......++..+.+.+++++|....++....... +......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 3444555555555555555555555555543221 3334444455555555555555555555544332 3444444455
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 447 GQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 447 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555555421 222445555555555555555555555555443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.9e-05 Score=71.64 Aligned_cols=187 Identities=11% Similarity=0.016 Sum_probs=126.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HH
Q 008454 331 PNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPN---VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDI--LT 405 (565)
Q Consensus 331 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~ 405 (565)
.....+..+...+.+.|++++|...++++.... +.+ ...+..+..++...|++++|...++++.+....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 356677788888899999999999999887753 222 245677888889999999999999999876432121 24
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008454 406 YNALILGLCKE--------GKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFE 477 (565)
Q Consensus 406 ~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 477 (565)
+..+..++.+. |+.++|.+.++.+.+.... +...+..+..... ... .. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~-------~~-------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN-------RL-------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH-------HH-------HHHHH
Confidence 55556666554 6778888888888765332 2222222211100 000 00 01112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 478 MLMSTFCQNEDFDRAAEVLLEMLEKCM--APDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 478 ~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
.+...+.+.|++++|...++++++... +.....+..+..++.+.|++++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455668889999999999999887632 123567888999999999999999998888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00014 Score=77.34 Aligned_cols=59 Identities=8% Similarity=0.101 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 230 SCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNME 290 (565)
Q Consensus 230 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (565)
++..+..+|-+.|+.++|..+|+++.+.. +-|..+.|.+...|... ++++|++++.+..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 44444444444444444444444444443 22444444444444444 4444444444433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.8e-05 Score=67.52 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=75.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCC--HHHH
Q 008454 346 KGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGL-CKEGK--TKKA 422 (565)
Q Consensus 346 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~--~~~A 422 (565)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445555555555555543 455666666666666666666666666666665433 555555555543 45555 3666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008454 423 AYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHI 475 (565)
Q Consensus 423 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 475 (565)
..++++..+.+.. +...+..+...+...|++++|+..|+++++.. +|+..-
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r 180 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNR 180 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccH
Confidence 6666666665544 55566666666666677777777776666653 444433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.8e-05 Score=66.55 Aligned_cols=156 Identities=12% Similarity=0.081 Sum_probs=103.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008454 340 IFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKT 419 (565)
Q Consensus 340 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 419 (565)
+-.|...|+++.+....+.+... . ..+...++.+++...++...+.+.. |...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 35677778877765444222111 0 0112255667777777777666443 777888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 420 KKAAYLVKDLDKNSLVPNASTYSALITGQ-CVRKN--SERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVL 496 (565)
Q Consensus 420 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~-~~~~~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 496 (565)
++|...|++..+.... +...+..+..++ ...|+ .++|.+++++.++.+ +-+..++..+...+...|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888776544 666677776653 55565 478888888888764 446677777777788888888888888
Q ss_pred HHHHHcCCCCCHHHH
Q 008454 497 LEMLEKCMAPDSIIL 511 (565)
Q Consensus 497 ~~~~~~~~~p~~~~~ 511 (565)
+++++. ..|+..-+
T Consensus 168 ~~aL~l-~~~~~~r~ 181 (198)
T PRK10370 168 QKVLDL-NSPRVNRT 181 (198)
T ss_pred HHHHhh-CCCCccHH
Confidence 888776 33344333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.5e-05 Score=78.22 Aligned_cols=149 Identities=9% Similarity=-0.010 Sum_probs=124.2
Q ss_pred ccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHH
Q 008454 187 RMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTL 266 (565)
Q Consensus 187 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 266 (565)
+..+.++.++-.|.....+.|.+++|..+++...+.... +......+...+.+.+++++|+..+++...... -+....
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~ 157 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREI 157 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHH
Confidence 345667899999999999999999999999999997643 677888899999999999999999999987653 366777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 008454 267 NMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTL 339 (565)
Q Consensus 267 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 339 (565)
+.+..++.+.|++++|..+|+++...+. -+..++..+...+-..|+.++|...|+...+.- .+....|+.+
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 8888889999999999999999998443 258888999999999999999999999987652 2344444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.6e-05 Score=65.57 Aligned_cols=155 Identities=13% Similarity=0.046 Sum_probs=76.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008454 374 LINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKN 453 (565)
Q Consensus 374 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 453 (565)
+-..+...|+-+....+........ .-|.......+....+.|++..|...+.+...... +|...|+.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHccC
Confidence 3344444455444444444433221 12444444455555555555555555555544322 355555555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008454 454 SERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFR 532 (565)
Q Consensus 454 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 532 (565)
++.|..-|.+..+.- .-+...++.+...+.-.|+.+.|..++......+. -|..+-..|.......|++++|..+..
T Consensus 150 ~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 150 FDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 555555555555532 22334445555555555555555555555544321 244444455555555555555555443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00042 Score=69.81 Aligned_cols=113 Identities=14% Similarity=0.157 Sum_probs=76.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008454 409 LILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNED 488 (565)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 488 (565)
.+.+......+.+|+.+++.+..... -..-|..+...|...|+++.|.++|-+. ..++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 34455566778888888887776532 2334677777888888888888887654 234556777888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 489 FDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 489 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
++.|.++-++.. |.......|-.-..-+-+.|++.+|.++|-.+
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 888887765543 33444556666666677788888888777443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00016 Score=77.07 Aligned_cols=237 Identities=11% Similarity=0.107 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008454 227 IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNV-YTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLI 305 (565)
Q Consensus 227 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 305 (565)
+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+...++.+++.-+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 5677888888888888888888888876654 3333 2233333355566664444333 233
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 008454 306 SGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSE 385 (565)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 385 (565)
.......++..+..+...|.+.+ -+..++..+..+|-+.|+.++|..+++++.+.. +-|....|.+...|... +.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 33334444544445555555543 244566777778888888888888888887765 56677777777777777 888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 386 MGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMI 465 (565)
Q Consensus 386 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 465 (565)
+|.+++.+.+.. +...+++..+..++.++...... +.. .-.++.+.+.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d----------------~f~~i~~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFD----------------FFLRIERKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cch----------------HHHHHHHHHH
Confidence 888777776654 44555666666666666654322 221 1222222222
Q ss_pred Hc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008454 466 RS-GCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLH 519 (565)
Q Consensus 466 ~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 519 (565)
.. |..--..++..+-..|...++++++.++++.+++.... |.....-++.+|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 21 11222344555555666677777777777777766333 4555556666554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00019 Score=74.82 Aligned_cols=353 Identities=12% Similarity=0.022 Sum_probs=218.3
Q ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008454 176 SKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMR 255 (565)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 255 (565)
..-|..++++.+..+.-..+|..|...|+...+...|.+.|++..+.+.. +...+......|++..+++.|..+.-..-
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 34556666666666666778999999999888999999999999887654 78899999999999999999999844332
Q ss_pred HCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 008454 256 RNRISPNV--YTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNV 333 (565)
Q Consensus 256 ~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 333 (565)
+.. +.-. ..|....-.|.+.++...|+.-|+...+..+. |...|..+..+|.+.|++..|.++|.+.... .|+.
T Consensus 554 qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s 629 (1238)
T KOG1127|consen 554 QKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS 629 (1238)
T ss_pred hhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh
Confidence 221 1111 12223344566788999999999988877554 7889999999999999999999999988875 3332
Q ss_pred HHHHH--HHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChH-------HHHHHHHHHHHCC
Q 008454 334 ITFNT--LIFGFCKKGKLHEANRIFSEMKATN------VSPNVVTYNTLINGYGQVGNSE-------MGASLYEEMLRNG 398 (565)
Q Consensus 334 ~~~~~--li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~-------~A~~~~~~m~~~~ 398 (565)
.|.. ..-..+..|.+.+|+..+....... ..--..++-.+...+...|-.. ++++.|.-...+.
T Consensus 630 -~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 630 -KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 2222 2344577899999999988775431 1111222222222233333333 3333333333332
Q ss_pred CCCCHHHHHHHHHHHHHcCCHH------HHHHHH-HHHHhCCCC--------------------CCHHHHHHHHHHHHh-
Q 008454 399 IKVDILTYNALILGLCKEGKTK------KAAYLV-KDLDKNSLV--------------------PNASTYSALITGQCV- 450 (565)
Q Consensus 399 ~~~~~~~~~~li~~~~~~g~~~------~A~~~~-~~~~~~~~~--------------------p~~~~~~~li~~~~~- 450 (565)
..-+...|-.+.++|.-.-..+ ....+| .+....+.- .+..+|..|+..|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 2223334433333322111000 001111 111111111 123334444443333
Q ss_pred -------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008454 451 -------RKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGK 523 (565)
Q Consensus 451 -------~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 523 (565)
..+...|+..++..++.. ..+..+|+.|.-. ...|++.-|.-.|-+-... .+-...+|..+...+....+
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEeccc
Confidence 123357788888887753 4556666666544 5557777777766555443 23356688888888899999
Q ss_pred HHHHHHHHHHHHHC
Q 008454 524 DELAMKLFRKMEIR 537 (565)
Q Consensus 524 ~~~A~~~~~~m~~~ 537 (565)
++-|...|.+.+..
T Consensus 866 ~E~A~~af~~~qSL 879 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSL 879 (1238)
T ss_pred HHHhhHHHHhhhhc
Confidence 99999999988654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0011 Score=59.07 Aligned_cols=221 Identities=17% Similarity=0.160 Sum_probs=144.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 197 DLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDI-ALGFYKEMRRNRISPNVYTLNMVMHAFCK 275 (565)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~-A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 275 (565)
--+.++|...|++...+.- +.... .|.......+...+...++.+. ...+.+.+......-+......-...|+.
T Consensus 45 ~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~ 120 (299)
T KOG3081|consen 45 VYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMH 120 (299)
T ss_pred HHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhc
Confidence 3455667767766544332 22222 3444444444444444444443 33455555554444444444455567888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 008454 276 LGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCK----KGKLHE 351 (565)
Q Consensus 276 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~ 351 (565)
.|++++|++...... +......=+..+.+..+++.|.+.+++|.+.. +..+.+.|..++.+ .+.+.+
T Consensus 121 ~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 121 DGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred CCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhh
Confidence 999999998887622 44444444566778888999999999998752 56677766666654 457889
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHH
Q 008454 352 ANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKT-KKAAYLVKDLD 430 (565)
Q Consensus 352 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 430 (565)
|.-+|++|.++ .+|+..+.+-...++...|++++|..+++....+... +..+...++-+-...|.. +...+.+.++.
T Consensus 192 AfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 192 AFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 99999999875 4788888888888888999999999999999987655 566665555555555554 44456666665
Q ss_pred hC
Q 008454 431 KN 432 (565)
Q Consensus 431 ~~ 432 (565)
..
T Consensus 270 ~~ 271 (299)
T KOG3081|consen 270 LS 271 (299)
T ss_pred hc
Confidence 54
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.6e-05 Score=63.34 Aligned_cols=100 Identities=11% Similarity=-0.006 Sum_probs=79.0
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMH 271 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 271 (565)
+|..+..+...+...|++++|...|+........ +...|..+..++.+.|++++|...|+...+.. +.+...+..+..
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~ 100 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGV 100 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 3444556777888888888888888888876644 77888888888888888888888888888764 346777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC
Q 008454 272 AFCKLGIIERAVEVFKNMESMG 293 (565)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~~~g 293 (565)
++...|+.++|...|+...+..
T Consensus 101 ~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 101 CLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888887753
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.6e-05 Score=61.94 Aligned_cols=92 Identities=13% Similarity=-0.037 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008454 408 ALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNE 487 (565)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 487 (565)
.+...+...|++++|...|+.+...... +...|..+..++...|++++|...|+.+.... +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 3444445555555555555555444322 44445555555555555555555555555442 334445555555555555
Q ss_pred CHHHHHHHHHHHHH
Q 008454 488 DFDRAAEVLLEMLE 501 (565)
Q Consensus 488 ~~~~A~~~~~~~~~ 501 (565)
++++|...|+..++
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0016 Score=63.06 Aligned_cols=112 Identities=15% Similarity=0.093 Sum_probs=49.0
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 345 KKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAY 424 (565)
Q Consensus 345 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 424 (565)
..|++++|+..++.+.+.. +-|..........+.+.++..+|.+.++++...... .......+..+|.+.|+..+|..
T Consensus 318 ~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHH
Confidence 3444555555555444431 222222333344444445555555555554443211 13333444444455555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008454 425 LVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQ 459 (565)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~ 459 (565)
+++........ |...|..|.++|...|+..++..
T Consensus 396 ~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 396 ILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHH
Confidence 54444443322 44445555555554444444433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0019 Score=62.66 Aligned_cols=139 Identities=15% Similarity=0.082 Sum_probs=91.6
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChH
Q 008454 307 GHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPN-VVTYNTLINGYGQVGNSE 385 (565)
Q Consensus 307 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~ 385 (565)
.+...|.+++|+..++.+...- +-|...+....+.+.+.++.++|.+.++.+... .|+ ....-.+..++.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 3455677777777777776652 224455555557777777777777777777765 344 445556667777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 386 MGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMI 465 (565)
Q Consensus 386 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 465 (565)
+|+.+++....... -|...|..|..+|...|+..++.....+ .+...|+++.|...+....
T Consensus 392 eai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHH
Confidence 77777777766533 3677777777777777776666544432 3445677777777777766
Q ss_pred Hc
Q 008454 466 RS 467 (565)
Q Consensus 466 ~~ 467 (565)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 64
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0015 Score=57.67 Aligned_cols=187 Identities=17% Similarity=0.146 Sum_probs=120.9
Q ss_pred CCHHHHHHHHHHHHhC---C-CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHH
Q 008454 277 GIIERAVEVFKNMESM---G-FIPSVTT-YNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNV-ITFNTLIFGFCKKGKLH 350 (565)
Q Consensus 277 g~~~~a~~~~~~m~~~---g-~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~ 350 (565)
.+.++.++++.++... | ..++..+ |..++-+....|+.+.|...++++.+.- |.. .+-..-.-.+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 3455566666555432 3 3344433 4445566667788888888888877652 332 22221122334567888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 351 EANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLD 430 (565)
Q Consensus 351 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 430 (565)
+|+++++.+.+.+ +.|.+++-.=+...-..|+--+|++-+.+..+. +..|...|..+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888888775 566677766566666667777777777777765 44588888888888888888888888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcC
Q 008454 431 KNSLVPNASTYSALITGQCVR---KNSERAFQLYKSMIRSG 468 (565)
Q Consensus 431 ~~~~~p~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~~ 468 (565)
-..+. +...+..+...+... .+.+.|.++|.+.++..
T Consensus 182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 65332 444555555544433 35667788888887753
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.014 Score=60.91 Aligned_cols=71 Identities=11% Similarity=-0.026 Sum_probs=56.5
Q ss_pred HhhhccCCChHHHHHHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhc
Q 008454 97 LTALSTHLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDS 169 (565)
Q Consensus 97 l~~~~~~l~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~ 169 (565)
+.+.++.+-.....++.+...+..+.|+...+-...-.+ ++..+...+-.++.+.++.++|..++++....
T Consensus 36 lkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~ 106 (932)
T KOG2053|consen 36 LKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK 106 (932)
T ss_pred HHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 344556666666777778888888899977776554443 58889999999999999999999999999887
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0035 Score=55.53 Aligned_cols=186 Identities=16% Similarity=0.161 Sum_probs=117.9
Q ss_pred CChHHHHHHHHHHHHC---C-CCcCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHH
Q 008454 207 KKFRNATDTFCQMRDY---G-FLPII-ESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTL-NMVMHAFCKLGIIE 280 (565)
Q Consensus 207 g~~~~A~~~~~~~~~~---~-~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~ 280 (565)
.+.++.++++..+... | ..++. ..|..++-+....|+.+.|...++.+...- |...-. ..-.-.+-..|.++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 4667777777776542 3 33333 345666677777788888888888876542 232211 11111234567888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 281 RAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMK 360 (565)
Q Consensus 281 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 360 (565)
+|+++++.+.+.. +.|.+++---+...-..|+--+|++-+....+. +..|...|.-+.+.|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888887765 335666665555666666666777766666654 34578888888888888888888888888877
Q ss_pred hCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHC
Q 008454 361 ATNVSPNVVTYNTLINGYGQVG---NSEMGASLYEEMLRN 397 (565)
Q Consensus 361 ~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 397 (565)
-.. +.+...+..+...+.-.| +.+.+.++|.+..+.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 653 445555555555554443 556677777777765
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00018 Score=59.77 Aligned_cols=92 Identities=17% Similarity=0.121 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008454 408 ALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNE 487 (565)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 487 (565)
.+...+...|++++|...++.+...+.. +...+..+...+...|++++|..+++..++.+ +.+...+..+...+...|
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcC
Confidence 3334444444444444444444333211 33334444444444444444444444444332 223333333444444444
Q ss_pred CHHHHHHHHHHHHH
Q 008454 488 DFDRAAEVLLEMLE 501 (565)
Q Consensus 488 ~~~~A~~~~~~~~~ 501 (565)
++++|...|++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (135)
T TIGR02552 100 EPESALKALDLAIE 113 (135)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00015 Score=60.24 Aligned_cols=96 Identities=10% Similarity=-0.022 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008454 141 ETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMR 220 (565)
Q Consensus 141 ~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 220 (565)
.....+...+...|++++|...++.+... .+.++..+..+...+...|++++|...|+...
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAY-------------------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHh-------------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555544443 22344444455555555555555555555544
Q ss_pred HCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 221 DYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 221 ~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
+.+.. +...+..+...+...|++++|...|+...+
T Consensus 79 ~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 79 ALDPD-DPRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred hcCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43321 344444444455555555555555554444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.9e-06 Score=49.52 Aligned_cols=33 Identities=36% Similarity=0.618 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008454 510 ILSELYSGLHHCGKDELAMKLFRKMEIRGLLPK 542 (565)
Q Consensus 510 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 542 (565)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00052 Score=66.94 Aligned_cols=124 Identities=13% Similarity=0.152 Sum_probs=81.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ 485 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 485 (565)
...|+..+...++++.|..+|+++.+.. |+ ....+++.+...++-.+|++++++.++.. +-+......-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3445555555677777777777777653 33 33446666666667777777777777542 4455566666666777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 486 NEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 486 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
.++++.|..+.+++.+. .+-+..+|..|..+|.+.|++++|+-.++.|.
T Consensus 247 k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777764 22234477777777777777777777777654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.2e-05 Score=48.29 Aligned_cols=33 Identities=24% Similarity=0.465 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008454 509 IILSELYSGLHHCGKDELAMKLFRKMEIRGLLP 541 (565)
Q Consensus 509 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 541 (565)
.+|+.++.+|.+.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888887776
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0005 Score=67.07 Aligned_cols=122 Identities=13% Similarity=0.129 Sum_probs=70.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008454 233 KFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKG 312 (565)
Q Consensus 233 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 312 (565)
.++..+...++++.|..+|+++.+.. |+ ....+++.+...++-.+|.+++.+..+... -+......-...+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcC
Confidence 34444445566666666666666542 33 233455555566666666666666654321 24444454555566666
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 313 LLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMK 360 (565)
Q Consensus 313 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 360 (565)
+++.|+.+.+++.+.. +-+..+|..|..+|.+.|+++.|+-.++.+.
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666666652 2244466666666666666666666666543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00055 Score=57.58 Aligned_cols=89 Identities=12% Similarity=0.113 Sum_probs=46.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDYGFLPI--IESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK 275 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 275 (565)
.+...+...|++++|...|+.+......+. ......+...+...|++++|+..++..... ......+......+.+
T Consensus 53 ~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~ 130 (145)
T PF09976_consen 53 QLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLA 130 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHH
Confidence 344556666666666666666665542222 123334455555666666666666443221 1223344455555566
Q ss_pred cCCHHHHHHHHHH
Q 008454 276 LGIIERAVEVFKN 288 (565)
Q Consensus 276 ~g~~~~a~~~~~~ 288 (565)
.|+.++|...|+.
T Consensus 131 ~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 131 QGDYDEARAAYQK 143 (145)
T ss_pred CCCHHHHHHHHHH
Confidence 6666666665554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00071 Score=56.89 Aligned_cols=20 Identities=15% Similarity=-0.031 Sum_probs=8.1
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 008454 513 ELYSGLHHCGKDELAMKLFR 532 (565)
Q Consensus 513 ~li~~~~~~g~~~~A~~~~~ 532 (565)
...+.|.+.|++++|...|+
T Consensus 123 ~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 123 LLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 33334444444444444433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00029 Score=68.96 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 261 PNVYTLNMVMHAFCKLGIIERAVEVFKNMESM--GFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNT 338 (565)
Q Consensus 261 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 338 (565)
.+......++..+....+++.+..++.+.... ....-..|..++++.|.+.|..+.++.++..=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34444555555555555555555555555443 1111223334556666666666666666655555566666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008454 339 LIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQV 381 (565)
Q Consensus 339 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 381 (565)
||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666655555554444555555444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.3e-05 Score=47.44 Aligned_cols=33 Identities=39% Similarity=0.786 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRSGCRPN 472 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 472 (565)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666665554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00025 Score=54.33 Aligned_cols=77 Identities=22% Similarity=0.388 Sum_probs=49.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHcCC--------ChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDYGF-LPIIESCNKFLSSLLDSE--------RVDIALGFYKEMRRNRISPNVYTLNM 268 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~A~~~~~~m~~~~~~p~~~~~~~ 268 (565)
.-|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555666788888888888888777 778888888777776542 12234555555555555566666655
Q ss_pred HHHHHH
Q 008454 269 VMHAFC 274 (565)
Q Consensus 269 li~~~~ 274 (565)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 555443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00029 Score=53.98 Aligned_cols=79 Identities=23% Similarity=0.372 Sum_probs=57.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCCHHHHH
Q 008454 232 NKFLSSLLDSERVDIALGFYKEMRRNRI-SPNVYTLNMVMHAFCKLG--------IIERAVEVFKNMESMGFIPSVTTYN 302 (565)
Q Consensus 232 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~p~~~~~~ 302 (565)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++...++.. ++-..+.+|++|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3345555566888888888888888888 788888888888777643 2345667777777777777777777
Q ss_pred HHHHHHHh
Q 008454 303 TLISGHCN 310 (565)
Q Consensus 303 ~li~~~~~ 310 (565)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77766654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.85 E-value=3e-05 Score=46.59 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 265 TLNMVMHAFCKLGIIERAVEVFKNMESMGFI 295 (565)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 295 (565)
+|+.+|.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00032 Score=68.72 Aligned_cols=124 Identities=14% Similarity=0.052 Sum_probs=94.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008454 293 GFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKN--GIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVT 370 (565)
Q Consensus 293 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 370 (565)
+...+......+++.+....+.+.+..++-+.... ....-..|..++++.|.+.|..++++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44557777777888888888888888888877754 2222234456888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 371 YNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKE 416 (565)
Q Consensus 371 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 416 (565)
++.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888777666777776666666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.2e-05 Score=44.74 Aligned_cols=30 Identities=33% Similarity=0.530 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008454 510 ILSELYSGLHHCGKDELAMKLFRKMEIRGL 539 (565)
Q Consensus 510 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 539 (565)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677888888888888888888888877764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0011 Score=62.51 Aligned_cols=129 Identities=12% Similarity=0.141 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITG-QCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTF 483 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (565)
+|..++...-+.+..+.|..+|.++.+.+.. +...|...... +...++.+.|.++|+..++. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRC-TYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS--THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 4555555555555566666666666543211 22333333333 22244455566666666654 344555556666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 484 CQNEDFDRAAEVLLEMLEKCMAPDS---IILSELYSGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 536 (565)
.+.|+.+.|..+|++.+.. +.++. ..|...++.-.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666544 22222 3566666666666666666666666654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.028 Score=51.61 Aligned_cols=61 Identities=5% Similarity=-0.003 Sum_probs=39.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 008454 198 LLFKTYAHRKKFRNATDTFCQMRDYGFLPII--ESCNKFLSSLLDSERVDIALGFYKEMRRNR 258 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 258 (565)
.....+...|++++|++.|+.+......... .+.-.++.++.+.+++++|...+++..+..
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3455556678888888888888775433211 122345667777788888888887777653
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.018 Score=52.93 Aligned_cols=181 Identities=10% Similarity=-0.007 Sum_probs=103.6
Q ss_pred HHHHHhhcCChHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhccc
Q 008454 110 KHVLLKVQKDYVLSLEFFTWVQTHKPSSLT-LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRM 188 (565)
Q Consensus 110 ~~~l~~~~~~~~~al~~f~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (565)
.+......+++..|.+.|+.+....|.++- ......++.++.+.+++++|...++++++.. +.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~----------------P~ 101 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN----------------PT 101 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----------------cC
Confidence 344455678999999999999988765432 2333567888899999999999999998872 22
Q ss_pred CCCChHHHHHHHHHHHhcC---------------Ch---HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHH
Q 008454 189 CDSSPLVFDLLFKTYAHRK---------------KF---RNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGF 250 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g---------------~~---~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~ 250 (565)
.+..+.++-.++.++...+ |. .+|++.|+.+.+ -|-...-..+|...
T Consensus 102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~r 166 (243)
T PRK10866 102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKR 166 (243)
T ss_pred CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHH
Confidence 3333334433333321111 11 223333333333 33333334445444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008454 251 YKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM--GFIPSVTTYNTLISGHCNKGLLSLAMKFKNLME 325 (565)
Q Consensus 251 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 325 (565)
+..+... =...-..+.+.|.+.|.+..|..-++.+.+. +..........++.+|.+.|..++|..+...+.
T Consensus 167 l~~l~~~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 167 LVFLKDR----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4444321 0111124455566777777777777777654 333344555566677777777777766665543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0012 Score=50.29 Aligned_cols=91 Identities=16% Similarity=0.146 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008454 443 ALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCG 522 (565)
Q Consensus 443 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 522 (565)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...+.. ..+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 33444444555555555555554432 2223444445555555555555555555554432 112234455555555555
Q ss_pred CHHHHHHHHHHHH
Q 008454 523 KDELAMKLFRKME 535 (565)
Q Consensus 523 ~~~~A~~~~~~m~ 535 (565)
++++|...+++..
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0014 Score=49.80 Aligned_cols=93 Identities=18% Similarity=0.108 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008454 407 NALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQN 486 (565)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 486 (565)
..+...+...|++++|...++.+.+.... +...+..+...+...+++++|.+.++...... +.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 34455555566666666666655543221 23445555555556666666666666665543 23334555555666666
Q ss_pred CCHHHHHHHHHHHHH
Q 008454 487 EDFDRAAEVLLEMLE 501 (565)
Q Consensus 487 g~~~~A~~~~~~~~~ 501 (565)
|+++.|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666655544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0015 Score=56.67 Aligned_cols=86 Identities=22% Similarity=0.287 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CChhHHHHH
Q 008454 262 NVYTLNMVMHAFCK-----LGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNK----------------GLLSLAMKF 320 (565)
Q Consensus 262 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------g~~~~a~~~ 320 (565)
+..+|..++..|.+ .|.++-....+..|.+.|+.-|..+|+.|++.+=+. .+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 55555555555553 355566666666666667666777777666655431 123445555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 321 KNLMEKNGIQPNVITFNTLIFGFCKKG 347 (565)
Q Consensus 321 ~~~m~~~g~~~~~~~~~~li~~~~~~g 347 (565)
+++|...|+-||..++..+++.+++.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 555555555555555555555554443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0029 Score=50.89 Aligned_cols=99 Identities=8% Similarity=-0.071 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGFL--PIIESCNKFLSSLLDSERVDIALGFYKEMRRNRIS--PNVYTLNMVM 270 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~li 270 (565)
++..++..+.+.|++++|.+.|+.+...... .....+..+...+.+.|+++.|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455666777777778887777777664321 11345666777777777777777777777654211 1234566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCC
Q 008454 271 HAFCKLGIIERAVEVFKNMESMG 293 (565)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~m~~~g 293 (565)
.++.+.|+.++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 66777777777777777776653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0032 Score=50.69 Aligned_cols=19 Identities=5% Similarity=0.062 Sum_probs=7.1
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 008454 446 TGQCVRKNSERAFQLYKSM 464 (565)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~m 464 (565)
..+.+.|+++.|...|+.+
T Consensus 47 ~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 47 EAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred HHHHhhccHHHHHHHHHHH
Confidence 3333333333333333333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.003 Score=59.58 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 334 ITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLING-YGQVGNSEMGASLYEEMLRNGIKVDILTYNALILG 412 (565)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 412 (565)
.+|..+|+..-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 357777777777777888888888877543 2334444444433 23346666688888887765 44466777777888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 413 LCKEGKTKKAAYLVKDLDKNSLVPNA----STYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
+.+.|+.+.|..+|+..... + +.. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888887765 2 233 37777777777788888888888877765
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0017 Score=56.49 Aligned_cols=103 Identities=16% Similarity=0.214 Sum_probs=68.1
Q ss_pred ChHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHH
Q 008454 192 SPLVFDLLFKTYAHR-----KKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTL 266 (565)
Q Consensus 192 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 266 (565)
+..+|..+++.|.+. |.++-....+..|.+.|+..|..+|+.|++.+-+ |.+- -..+|+.+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~------------ 111 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE------------ 111 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH------------
Confidence 556666666666543 6777788889999999999999999999998875 3221 11111111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008454 267 NMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGL 313 (565)
Q Consensus 267 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 313 (565)
..- .-.+.+-|++++++|...|+-||..++..++..+.+.+.
T Consensus 112 ---F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ---FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111 112345677777888777877888888777777766554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0044 Score=51.39 Aligned_cols=93 Identities=10% Similarity=-0.059 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 337 NTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKE 416 (565)
Q Consensus 337 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 416 (565)
-.+...+...|++++|.++|+.+.... +-+..-|..|..++-..|++++|+..|.......+. |...+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence 344455566677777777777666543 334455556666666677777777777777666543 666666677777777
Q ss_pred CCHHHHHHHHHHHHh
Q 008454 417 GKTKKAAYLVKDLDK 431 (565)
Q Consensus 417 g~~~~A~~~~~~~~~ 431 (565)
|+.+.|.+.|+....
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777766554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.089 Score=50.31 Aligned_cols=109 Identities=19% Similarity=0.184 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFC 484 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (565)
+.+..|.-+...|+...|.++-.+.. .|+...|..-+.+++..+++++-.++... + -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 45556667778888888877766553 47888888889999999998877765432 1 23466888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 485 QNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRK 533 (565)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 533 (565)
+.|+..+|..+..++ + +..-+..|.+.|++.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 999988888887662 1 24566778888888888766444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00014 Score=42.45 Aligned_cols=29 Identities=28% Similarity=0.586 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYG 223 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 223 (565)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0028 Score=59.84 Aligned_cols=111 Identities=14% Similarity=0.078 Sum_probs=55.3
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHH--HHhC--CCC-CCHHHHHHHHH
Q 008454 236 SSLLDSERVDIALGFYKEMRRNRISPNV----YTLNMVMHAFCKLGIIERAVEVFKN--MESM--GFI-PSVTTYNTLIS 306 (565)
Q Consensus 236 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~--m~~~--g~~-p~~~~~~~li~ 306 (565)
.-+|+.|+......+|+...+.|.. |. ..|..|..+|.-.+++++|+++... ...+ |-+ -.......|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4567777888888888877776643 32 2344555555566677777665432 1111 100 01223333444
Q ss_pred HHHhcCChhHHHHHHHH----HHHCCCC-CCHHHHHHHHHHHHHcC
Q 008454 307 GHCNKGLLSLAMKFKNL----MEKNGIQ-PNVITFNTLIFGFCKKG 347 (565)
Q Consensus 307 ~~~~~g~~~~a~~~~~~----m~~~g~~-~~~~~~~~li~~~~~~g 347 (565)
.+--.|.+++|.-...+ ..+.|-. ....++..+.+.|...|
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakG 149 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKG 149 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcc
Confidence 55556666666543222 1222211 12344445556665544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0042 Score=60.82 Aligned_cols=87 Identities=13% Similarity=-0.018 Sum_probs=44.4
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 413 LCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRA 492 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 492 (565)
+...|++++|+..|+++.+.+.. +...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence 34445555555555555544332 34445555555555555555555555555442 23344455555555555555555
Q ss_pred HHHHHHHHH
Q 008454 493 AEVLLEMLE 501 (565)
Q Consensus 493 ~~~~~~~~~ 501 (565)
...|+++++
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 555555554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0048 Score=51.17 Aligned_cols=96 Identities=13% Similarity=-0.023 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFC 484 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (565)
....+..-+...|++++|..+|+-+...+.. +..-|-.|..++-..|++++|+..|..+.... +-|...+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3444555566677777777777766665443 55556666666666777777777777776665 355666666666777
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 008454 485 QNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~ 502 (565)
..|+.+.|.+.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777666554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0099 Score=51.60 Aligned_cols=82 Identities=10% Similarity=0.082 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSLVPN--ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTF 483 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (565)
+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.++++.. +-+...+..+...+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34444444444555555555554443221111 2344444445555555555555555555432 22233344444444
Q ss_pred HhcCC
Q 008454 484 CQNED 488 (565)
Q Consensus 484 ~~~g~ 488 (565)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 44444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.13 Score=49.83 Aligned_cols=126 Identities=14% Similarity=0.116 Sum_probs=77.8
Q ss_pred HcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 008454 415 KEGK-TKKAAYLVKDLDKNSLVPNASTYSALI----TGQCV---RKNSERAFQLYKSMIRSGCRPN----KHIFEMLMST 482 (565)
Q Consensus 415 ~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~li----~~~~~---~~~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~ 482 (565)
+.|. -++|+.+++.+.+-... |...-|.+. .+|.. ...+.+-+++-+-+.+.|++|- ...-|.|.++
T Consensus 391 ~~g~~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred hcCCccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 4444 67788888887764222 333322222 22222 2233344444444455676653 3344555444
Q ss_pred --HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 008454 483 --FCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLR 548 (565)
Q Consensus 483 --~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 548 (565)
+...|++.++.-+-.-+.+ +.|+..+|..+.-++....++++|+.++..+ +|+..+++.
T Consensus 470 EyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 4567999988766555544 7899999999999999999999999999876 455544443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0038 Score=61.10 Aligned_cols=91 Identities=7% Similarity=-0.027 Sum_probs=54.8
Q ss_pred HHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc
Q 008454 147 LHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLP 226 (565)
Q Consensus 147 ~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 226 (565)
...+...|++++|..+++++++. .+.++..|..+..+|.+.|++++|+..++++.+.+..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~-------------------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~- 68 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL-------------------DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS- 68 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Confidence 34444556666666666666655 3345556666666666666666666666666665432
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 008454 227 IIESCNKFLSSLLDSERVDIALGFYKEMRRN 257 (565)
Q Consensus 227 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 257 (565)
+...|..+..+|...|++++|+..|+...+.
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 4555666666666666666666666666554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0082 Score=52.13 Aligned_cols=95 Identities=7% Similarity=-0.068 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 138 LTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFC 217 (565)
Q Consensus 138 ~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (565)
.....+..+...+...|++++|...+++.++...- .+.....+..+...+.+.|++++|+..++
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEED----------------PNDRSYILYNMGIIYASNGEHDKALEYYH 96 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc----------------cchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34556677777777888888888888887765210 01123567778888888888888888888
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChHHHHH
Q 008454 218 QMRDYGFLPIIESCNKFLSSLLDSERVDIALG 249 (565)
Q Consensus 218 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~ 249 (565)
+..+.... +...+..+...+...|+...+..
T Consensus 97 ~al~~~p~-~~~~~~~lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 97 QALELNPK-QPSALNNIAVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHhCcc-cHHHHHHHHHHHHHcCChHhHhh
Confidence 88775433 45666667777777666544443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0031 Score=54.59 Aligned_cols=83 Identities=5% Similarity=-0.124 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 140 LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQM 219 (565)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 219 (565)
...+..++..+...|++++|...+++.+....- ....+.++..+...|...|++++|++.+++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~----------------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID----------------PYDRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc----------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555566666667777777777666554210 0012235566666666667777777766666
Q ss_pred HHCCCCcCHHHHHHHHHHHH
Q 008454 220 RDYGFLPIIESCNKFLSSLL 239 (565)
Q Consensus 220 ~~~~~~p~~~~~~~ll~~~~ 239 (565)
...... ....++.+...+.
T Consensus 99 l~~~~~-~~~~~~~la~i~~ 117 (168)
T CHL00033 99 LERNPF-LPQALNNMAVICH 117 (168)
T ss_pred HHhCcC-cHHHHHHHHHHHH
Confidence 654322 2344444444444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.032 Score=53.20 Aligned_cols=260 Identities=15% Similarity=0.026 Sum_probs=126.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 199 LFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGI 278 (565)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 278 (565)
....+.+..++.+|+..+....+.... ++..|..-+..+...+++++|+--.+.-.+... -....+.-.-+++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCC-CccccccchhhhhhhhHH
Confidence 345666778888999999888887754 566677667777777888887766655443210 011222223333333344
Q ss_pred HHHHHHHHHH---------------HHhCCC-CCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 279 IERAVEVFKN---------------MESMGF-IPSVTTYNTLI-SGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIF 341 (565)
Q Consensus 279 ~~~a~~~~~~---------------m~~~g~-~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 341 (565)
..+|.+.++. +..... +|...+|..+- .++...|++++|.++--...+..- .+......--.
T Consensus 133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n~~al~vrg~ 211 (486)
T KOG0550|consen 133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TNAEALYVRGL 211 (486)
T ss_pred HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-chhHHHHhccc
Confidence 4444433331 111111 12223333221 334456666666666555555421 12222211122
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------------HHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHH
Q 008454 342 GFCKKGKLHEANRIFSEMKATNVSPNVVTYNT-------------LINGYGQVGNSEMGASLYEEMLRN---GIKVDILT 405 (565)
Q Consensus 342 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-------------li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~ 405 (565)
++.-.++.+.+...|++....+ |+...-.. -..-..+.|++.+|.+.|.+.+.. +..++...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 3334556666666666665542 33221111 112234556666666666665543 23344455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHH--HHHHhcCCHHHHHHHHHHHHHc
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSLVPNAS-TYSALI--TGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li--~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
|........+.|+.++|+.--++..+. |.. ....+. .++...+++++|.+-|+...+.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555555666666665555555442 222 111121 2233345555555555555543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00036 Score=52.32 Aligned_cols=82 Identities=15% Similarity=0.214 Sum_probs=53.0
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHH
Q 008454 117 QKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVF 196 (565)
Q Consensus 117 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (565)
.++++.|+.+|+.+....+..++...+..++.++.+.|++++|..++++ .+. .+.+....
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-------------------~~~~~~~~ 61 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-------------------DPSNPDIH 61 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-------------------HHCHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-------------------CCCCHHHH
Confidence 4577888888888777655322344555578888888888888888876 222 11233444
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 008454 197 DLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~ 218 (565)
-.+..+|.+.|++++|+++|++
T Consensus 62 ~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 62 YLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhc
Confidence 4567778888888888887765
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.027 Score=53.29 Aligned_cols=172 Identities=12% Similarity=0.147 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc-----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGFLP-----IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMV 269 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 269 (565)
.|......|-..|++++|.+.|.+..+..... -...|......|.+. ++++|...+++.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A--------------- 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA--------------- 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH---------------
Confidence 34555566677777777777777664321100 011222222222222 444444443333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHH----CCCC-CCHHHHHHHHHHH
Q 008454 270 MHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNK-GLLSLAMKFKNLMEK----NGIQ-PNVITFNTLIFGF 343 (565)
Q Consensus 270 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~----~g~~-~~~~~~~~li~~~ 343 (565)
+..|...|++..|-+++..+- ..|-.. |++++|.+.|++..+ .|.. --..++..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 344556666665555444432 334444 666777766665543 2210 0123345556667
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCC-----CHH-HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 344 CKKGKLHEANRIFSEMKATNVSP-----NVV-TYNTLINGYGQVGNSEMGASLYEEMLRN 397 (565)
Q Consensus 344 ~~~g~~~~A~~~~~~m~~~~~~~-----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 397 (565)
.+.|++++|.++|++....-... +.. .|...+-++...||...|.+.+++....
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777777777665532211 111 1222333444556666666666666544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00048 Score=51.62 Aligned_cols=80 Identities=26% Similarity=0.300 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008454 452 KNSERAFQLYKSMIRSGCR-PNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKL 530 (565)
Q Consensus 452 ~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 530 (565)
|+++.|+.+++++.+..-. ++...+-.+..++.+.|++++|..++++ .+.+.. +....-.+..+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555554210 1223333355555555666666555555 211111 122233335555555666666555
Q ss_pred HHH
Q 008454 531 FRK 533 (565)
Q Consensus 531 ~~~ 533 (565)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.26 Score=50.34 Aligned_cols=123 Identities=16% Similarity=0.153 Sum_probs=70.5
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCc--------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDY-GFLP--------IIESCNKFLSSLLDSERVDIALGFYKEMRRNRI 259 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p--------~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~ 259 (565)
..|.|..|..|...-...-.++.|...|-+...+ |++. +...-.+=+.+| -|++++|.++|-+|-++.
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh-
Confidence 5678889988888888878888888888776554 3321 111112222222 388999999998886542
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008454 260 SPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGF--IPSVTTYNTLISGHCNKGLLSLAMKFKNL 323 (565)
Q Consensus 260 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 323 (565)
..|..+.+.||+-...++++.=- .+. .--...|+.+...++....+++|.+++..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23445556666666555553210 000 01134455555555555555555555443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0063 Score=52.65 Aligned_cols=62 Identities=13% Similarity=0.076 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLVP--NASTYSALITGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 466 (565)
.|..++..+...|++++|...|+........+ ...+|..+...+...|++++|++.++..+.
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444445555555555555554332111 112444455555555555555555555554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0059 Score=57.79 Aligned_cols=266 Identities=14% Similarity=0.017 Sum_probs=160.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHcCCChHHHHHHHHHHH--H--CCC-CCCHHHHHHHH
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPII----ESCNKFLSSLLDSERVDIALGFYKEMR--R--NRI-SPNVYTLNMVM 270 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~A~~~~~~m~--~--~~~-~p~~~~~~~li 270 (565)
..-+++.|+....+.+|+...+.|-. |. ..|..|..+|.-.+++++|+++...=+ . .|- .-.......|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 45688999999999999999998765 43 346777778888888888887643211 0 010 00112222333
Q ss_pred HHHHHcCCHHHHHHHHHH----HHhCCCC-CCHHHHHHHHHHHHhcCC--------------------hhHHHHHHHHH-
Q 008454 271 HAFCKLGIIERAVEVFKN----MESMGFI-PSVTTYNTLISGHCNKGL--------------------LSLAMKFKNLM- 324 (565)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~----m~~~g~~-p~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m- 324 (565)
..+--.|.+++|+..-.+ ..+.|-. .....+-.+...|...|+ ++.|.++|.+-
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 344445666666543222 1122211 123344445666655442 23344444322
Q ss_pred ---HHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008454 325 ---EKNGIQ-PNVITFNTLIFGFCKKGKLHEANRIFSEMK----ATNV-SPNVVTYNTLINGYGQVGNSEMGASLYEEML 395 (565)
Q Consensus 325 ---~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 395 (565)
.+.|-. .-..+|..|.+.|.-.|+++.|+..-+.-. +-|- ......+..+..++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 222211 123456677777778889999887654322 2231 1234567788889999999999999888654
Q ss_pred HC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 396 RN----GI-KVDILTYNALILGLCKEGKTKKAAYLVKDLDKN-----SLVPNASTYSALITGQCVRKNSERAFQLYKSMI 465 (565)
Q Consensus 396 ~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 465 (565)
.. |- .........|.+.|.-..++++|+.++..-... +..-....+.+|..+|...|..++|+.+....+
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 32 22 234566778889998888999998888764321 111245578888999999999888887776655
Q ss_pred H
Q 008454 466 R 466 (565)
Q Consensus 466 ~ 466 (565)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 4
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.28 Score=50.10 Aligned_cols=130 Identities=8% Similarity=0.015 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 138 LTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFC 217 (565)
Q Consensus 138 ~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (565)
|-++.|..++......-.++.|+..|-+.....++....++ ..+. +...-.+=+.+| -|++++|.++|-
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl-~~i~--------s~~~q~aei~~~--~g~feeaek~yl 758 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRL-RTIH--------SKEQQRAEISAF--YGEFEEAEKLYL 758 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHh-hhhh--------hHHHHhHhHhhh--hcchhHhhhhhh
Confidence 45678888888888888888888877666554332211111 1111 011111112222 378888888887
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008454 218 QMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRI--SPNVYTLNMVMHAFCKLGIIERAVEVFKN 288 (565)
Q Consensus 218 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 288 (565)
.|.++++. +..+.+.|++-.+.++++.-- .+. ..-...|+.+...+.....+++|.+.|..
T Consensus 759 d~drrDLA---------ielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 759 DADRRDLA---------IELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred ccchhhhh---------HHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77665432 344455555555555543210 000 00123455555555555555555555543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.04 Score=49.21 Aligned_cols=182 Identities=12% Similarity=0.036 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGFL--PIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHA 272 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 272 (565)
..-.....+...|++.+|++.|+.+...... --..+.-.++.++.+.|+++.|...+++..+.-+.-...-+...+.+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 3334566777889999999999999875432 12456667788888999999999999988765322122223333333
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008454 273 FCKLGIIERAVEVFKNMESMGFI---PSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKL 349 (565)
Q Consensus 273 ~~~~g~~~~a~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 349 (565)
.+......... ....... --...+..++.-|=......+|...+..+.+. =...--.+...|.+.|.+
T Consensus 87 ~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 87 LSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-H
T ss_pred HHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccH
Confidence 22211111110 0000000 00122333444444444445555444444331 011111244666777777
Q ss_pred HHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHH
Q 008454 350 HEANRIFSEMKATNVSPNV----VTYNTLINGYGQVGNSEMG 387 (565)
Q Consensus 350 ~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A 387 (565)
..|..-++.+.+. -|+. .....++.+|.+.|..+.+
T Consensus 158 ~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 158 KAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7777777776664 2222 3345566666666665533
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.031 Score=49.92 Aligned_cols=178 Identities=11% Similarity=0.090 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 139 TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (565)
+.+.+......+...|++.+|...|+.+... |+..+-.+.+.-.++.++.+.|+++.|...|+.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~----------------~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~ 67 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDR----------------YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYER 67 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3445566677778899999999999998877 233444556677889999999999999999999
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCC-------------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008454 219 MRDYGFLPIIESCNKFLSSLLDSE-------------RVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEV 285 (565)
Q Consensus 219 ~~~~~~~p~~~~~~~ll~~~~~~~-------------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 285 (565)
..+.-..-...-+...+.+.+..+ ...+|...| ..++.-|=...-..+|...
T Consensus 68 fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~---------------~~li~~yP~S~y~~~A~~~ 132 (203)
T PF13525_consen 68 FIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEF---------------EELIKRYPNSEYAEEAKKR 132 (203)
T ss_dssp HHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHH---------------HHHHHH-TTSTTHHHHHHH
T ss_pred HHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHH---------------HHHHHHCcCchHHHHHHHH
Confidence 887643322222222222222111 122333333 3344444445555666665
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 008454 286 FKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPN----VITFNTLIFGFCKKGKLHEAN 353 (565)
Q Consensus 286 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~ 353 (565)
+..+.+. =...-..+...|.+.|.+..|..-++.+.+. -|+ ......++.+|.+.|..+.+.
T Consensus 133 l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 133 LAELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 5555432 0111123567789999999999999999876 233 234567778888888887543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.039 Score=56.63 Aligned_cols=135 Identities=12% Similarity=0.071 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHH
Q 008454 364 VSPNVVTYNTLINGYGQVG-----NSEMGASLYEEMLRNGIKVDILTYNALILGLCKEG--------KTKKAAYLVKDLD 430 (565)
Q Consensus 364 ~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~~~ 430 (565)
.+.|...|...+++..... +.+.|..+|++..+.... ....|..+..++.... ++..+.+......
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3456666666666643322 245666677766665322 2334444333332211 1122222222222
Q ss_pred hCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 431 KNS-LVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 431 ~~~-~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
... ...+...|..+.-.....|++++|...++++++.+ |+...|..+...+...|+.++|.+.++++.+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 211 11233444444444444555555555555555542 4555555555555555555555555555554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.017 Score=54.75 Aligned_cols=174 Identities=11% Similarity=0.128 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCC---ChHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 142 THSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDS---SPLVFDLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 142 ~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (565)
.|......+-..+++++|.+.+.+..+.. ..... ....|......|.+. ++++|++.+++
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~----------------~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~ 99 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCY----------------EKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEK 99 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHH----------------HHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHH----------------HHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHH
Confidence 44455556667778887777777665431 00000 112233333333333 55555555554
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhC----C
Q 008454 219 MRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKL-GIIERAVEVFKNMESM----G 293 (565)
Q Consensus 219 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~----g 293 (565)
. +..|...|++..|-..+.++-+ .|-.. |++++|++.|++..+. |
T Consensus 100 A---------------~~~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~ 149 (282)
T PF14938_consen 100 A---------------IEIYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEG 149 (282)
T ss_dssp H---------------HHHHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT
T ss_pred H---------------HHHHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 4 4556666776666665555432 23334 5666666666655432 2
Q ss_pred CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 294 FI-PSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQP-----NVI-TFNTLIFGFCKKGKLHEANRIFSEMKAT 362 (565)
Q Consensus 294 ~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 362 (565)
.. --..++..+...+.+.|++++|.++|+++....... +.. .+...+-++...||...|.+.+++....
T Consensus 150 ~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 150 SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 10 012344556677788888888888888877643221 121 2223344566678888888888887654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.12 Score=46.29 Aligned_cols=132 Identities=14% Similarity=0.118 Sum_probs=79.2
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----
Q 008454 230 SCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLI---- 305 (565)
Q Consensus 230 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li---- 305 (565)
+.+.++..+...|.+.-..+++++.++...+.+......+++.-.+.||.+.|...|++..+..-..|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666666667777777777777776555666667777777777777777777777666543333333333332
Q ss_pred -HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 306 -SGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKAT 362 (565)
Q Consensus 306 -~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 362 (565)
..|.-.+++.+|...+.+...... .|+...|.-.-+..-.|+..+|++.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334445666666666666655432 24444444433444456677777777777664
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.054 Score=55.62 Aligned_cols=145 Identities=13% Similarity=0.112 Sum_probs=99.7
Q ss_pred CCCCCCHHHHHHHHHHHHH--cC---CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC--------ChHHHHHHHH
Q 008454 327 NGIQPNVITFNTLIFGFCK--KG---KLHEANRIFSEMKATNVSPN-VVTYNTLINGYGQVG--------NSEMGASLYE 392 (565)
Q Consensus 327 ~g~~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g--------~~~~A~~~~~ 392 (565)
.+.+.+...|...+.+... .+ +.+.|..+|++..+.. |+ ...|..+..++.... +...+.+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3456688888888877543 22 3678999999988863 44 445555444443321 1223333344
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008454 393 EMLRN-GIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRP 471 (565)
Q Consensus 393 ~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 471 (565)
+.... ....+...|.++.......|++++|...++++.+.+ |+...|..+...+...|+.++|.+.++++... .|
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 33332 233456778888777778899999999999998865 67888999999999999999999999999876 45
Q ss_pred CHHHHH
Q 008454 472 NKHIFE 477 (565)
Q Consensus 472 ~~~~~~ 477 (565)
...+|.
T Consensus 485 ~~pt~~ 490 (517)
T PRK10153 485 GENTLY 490 (517)
T ss_pred CCchHH
Confidence 555544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.018 Score=45.97 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=25.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 410 ILGLCKEGKTKKAAYLVKDLDKNSLVPN--ASTYSALITGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 466 (565)
..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++...
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444555555555555544443322 11233334444444555555555544443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.002 Score=45.88 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=16.7
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 190 DSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDY 222 (565)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 222 (565)
|.+..+...++.+|.+.|++++|.++++.+...
T Consensus 22 p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 22 PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555543
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.29 Score=46.91 Aligned_cols=259 Identities=11% Similarity=-0.007 Sum_probs=150.9
Q ss_pred HHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC
Q 008454 148 HILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPI 227 (565)
Q Consensus 148 ~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 227 (565)
..+.+...+..|+..+...++. |+.+..-|..-+..+...|++++|.--.+.-.+.... .
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~-------------------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~ 116 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDM-------------------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-F 116 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHh-------------------CccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-c
Confidence 3344566667777777777666 4445555555555666666666666555444332110 0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHH------------HHHH---HHCCC-CCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Q 008454 228 IESCNKFLSSLLDSERVDIALGF------------YKEM---RRNRI-SPNVYTLNMVM-HAFCKLGIIERAVEVFKNME 290 (565)
Q Consensus 228 ~~~~~~ll~~~~~~~~~~~A~~~------------~~~m---~~~~~-~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~ 290 (565)
.......-+.+...+...+|.+. +... ..... +|.-.++..+- .++.-.|+.++|.++--.+.
T Consensus 117 ~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~il 196 (486)
T KOG0550|consen 117 SKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDIL 196 (486)
T ss_pred cccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHH
Confidence 11111111222222222222222 2221 11111 23334444332 34556789999998887777
Q ss_pred hCCCCCCHHHHHHHHH--HHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-------------HHHHHHHHcCCHHHHHHH
Q 008454 291 SMGFIPSVTTYNTLIS--GHCNKGLLSLAMKFKNLMEKNGIQPNVITFN-------------TLIFGFCKKGKLHEANRI 355 (565)
Q Consensus 291 ~~g~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-------------~li~~~~~~g~~~~A~~~ 355 (565)
+.. ....+..+++ ++.-.++.+.+..-|++....+ |+-..-. .-.+-..+.|.+..|.+.
T Consensus 197 kld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 197 KLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred hcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHH
Confidence 653 2223333443 3445778899999999888764 4433221 113446788999999999
Q ss_pred HHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 356 FSEMKAT---NVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKN 432 (565)
Q Consensus 356 ~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (565)
|.+.... ...++...|.....+..+.|+..+|+.--+...+.+.. =...|..-..++.-.+++++|.+-++...+.
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9998874 35566677777788888999999999998888874211 1223334445566678899999888887764
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.04 Score=50.66 Aligned_cols=99 Identities=16% Similarity=0.089 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 008454 437 NASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNE---DFDRAAEVLLEMLEKCMAPDSIILSE 513 (565)
Q Consensus 437 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~ 513 (565)
|...|..|...|...|+++.|..-|.+..+.. .++...+..+..++.... ...++..+|++++..+ +-|......
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 66677777777777777777777777777653 455555555555544332 3556677777776653 225556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 514 LYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 514 li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
|...+...|++++|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 666777777777777777777655
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.01 Score=54.20 Aligned_cols=103 Identities=14% Similarity=0.113 Sum_probs=84.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008454 376 NGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSE 455 (565)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 455 (565)
.-+.+.+++++|+..|.+.++.... |.+-|..=..+|++.|.++.|++-.+.....+.. ...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 4566789999999999999997543 7778888899999999999999888888775432 4558999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008454 456 RAFQLYKSMIRSGCRPNKHIFEMLMST 482 (565)
Q Consensus 456 ~A~~~~~~m~~~~~~p~~~~~~~li~~ 482 (565)
+|++.|++.++. .|+-.+|..=+..
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHHHH
Confidence 999999999875 6777776654443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.23 Score=44.59 Aligned_cols=239 Identities=15% Similarity=0.149 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHH-HHH--HHHhcCChHHHHHHH
Q 008454 140 LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDL-LFK--TYAHRKKFRNATDTF 216 (565)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-li~--~~~~~g~~~~A~~~~ 216 (565)
...+..-+.++.+.+.+++|..-++.+-+. +.+.-.|+...+.|+...++-+-|.. ++. +....|...+.+.-+
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~l---D~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl 145 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNL---DQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRL 145 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccC---CCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 344556678888999999888776665443 33444444333334333333222221 111 122334444444433
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008454 217 CQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIP 296 (565)
Q Consensus 217 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 296 (565)
..+.. ....++..+......+.-+++|++-. ....+.++..+.-.|.+.-...++.+.++...+.
T Consensus 146 ~~L~~--------~V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~ 210 (366)
T KOG2796|consen 146 HKLKT--------VVSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ 210 (366)
T ss_pred HHHHH--------HHHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc
Confidence 33322 01112222222222233344443322 1234455555555666666666666666655455
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008454 297 SVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTL-----IFGFCKKGKLHEANRIFSEMKATNVSPNVVTY 371 (565)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 371 (565)
+......|++...+.|+.+.|..+|++..+..-..|..+.+.+ ...|.-.+++.+|...+.+....+ +.|....
T Consensus 211 ~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~ 289 (366)
T KOG2796|consen 211 EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVAN 289 (366)
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhh
Confidence 5566666666666666666666666655543222222222222 223334445555555555554432 2233333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 372 NTLINGYGQVGNSEMGASLYEEMLRN 397 (565)
Q Consensus 372 ~~li~~~~~~g~~~~A~~~~~~m~~~ 397 (565)
|.-.-+..-.|+...|.+.++.|.+.
T Consensus 290 NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 290 NNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 32222222345555555555555543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.017 Score=52.80 Aligned_cols=100 Identities=13% Similarity=0.108 Sum_probs=58.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008454 202 TYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIER 281 (565)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 281 (565)
-+.+.++|++|+..|.+.++.... |.+.|..-..+|.+.|.++.|++-.+..+..+. --..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHHH
Confidence 344556666666666666665533 556666666666666666666666666554321 123456666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH
Q 008454 282 AVEVFKNMESMGFIPSVTTYNTLI 305 (565)
Q Consensus 282 a~~~~~~m~~~g~~p~~~~~~~li 305 (565)
|++.|++.++. .|+-.+|-.=+
T Consensus 168 A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHHHH
Confidence 66666666553 45554554433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.057 Score=43.15 Aligned_cols=106 Identities=17% Similarity=0.084 Sum_probs=64.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHH
Q 008454 199 LFKTYAHRKKFRNATDTFCQMRDYGFLPI--IESCNKFLSSLLDSERVDIALGFYKEMRRNRIS--PNVYTLNMVMHAFC 274 (565)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~ 274 (565)
+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|+.++++....... -+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45566677888888888888888776533 345666777777788888888888777654211 01122222333556
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008454 275 KLGIIERAVEVFKNMESMGFIPSVTTYNTLISGH 308 (565)
Q Consensus 275 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 308 (565)
..|+.++|++.+-.... ++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 67777777777665443 2333444444444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.19 Score=42.68 Aligned_cols=132 Identities=14% Similarity=0.096 Sum_probs=82.0
Q ss_pred cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHH
Q 008454 226 PIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFI-PSVTTYNTL 304 (565)
Q Consensus 226 p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l 304 (565)
|++..--.|..++.+.|+..+|...|++...--...|....-.+.++....+++..|...++++-+.... .+..+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 5666666677777777777777777777764334456666666777777777777777777776654210 112233445
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008454 305 ISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEM 359 (565)
Q Consensus 305 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 359 (565)
...+...|.+..|..-|+..... -|+...-......+.+.|+.+++..-+.++
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 66677777777777777777765 344444334445556666665555444433
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.23 Score=50.20 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=16.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 008454 481 STFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
.+|-+.|+..+|.++++++...
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhh
Confidence 3566778888888888887653
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.003 Score=44.94 Aligned_cols=52 Identities=10% Similarity=0.038 Sum_probs=31.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 008454 205 HRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRN 257 (565)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 257 (565)
+.|++++|++.|+.+...... +...+..+..+|.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456666666666666665433 5566666666666666666666666666554
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.27 Score=47.53 Aligned_cols=80 Identities=11% Similarity=0.035 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 335 TFNTLIFGFCKKGKLHEANRIFSEMKATN---VSPNVVTYNTLINGYGQ---VGNSEMGASLYEEMLRNGIKVDILTYNA 408 (565)
Q Consensus 335 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 408 (565)
+...++-.|-...+++..+++.+.+...- +.-....-....-++.+ .|+.++|.+++..+......++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33445556777777888888887776541 11122222233344455 6777777777777665555667777776
Q ss_pred HHHHHH
Q 008454 409 LILGLC 414 (565)
Q Consensus 409 li~~~~ 414 (565)
+...|-
T Consensus 223 ~GRIyK 228 (374)
T PF13281_consen 223 LGRIYK 228 (374)
T ss_pred HHHHHH
Confidence 666553
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0045 Score=43.58 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=32.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
...+.+.|++++|+..|+.+.+.... +...+..+..++...|++++|...|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555566666666666666655522 455566666666666666666666666554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0071 Score=42.55 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=19.3
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 413 LCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMI 465 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 465 (565)
+.+.|++++|...|+++.+.... +...+..+..++...|++++|...|++++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33334444444444444333211 23333333333334444444444444333
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.029 Score=47.16 Aligned_cols=73 Identities=18% Similarity=0.254 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHhhHH
Q 008454 474 HIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKME-----IRGLLPKGFDKL 547 (565)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~ 547 (565)
.+...++..+...|++++|..+++.+.... +-+...|..+|.+|...|+..+|.++|+++. +.|+.|+..+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 345566777788999999999999998873 4477889999999999999999999998875 348888876543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.27 Score=41.74 Aligned_cols=134 Identities=12% Similarity=0.095 Sum_probs=88.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHH
Q 008454 365 SPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLV-PNASTYSA 443 (565)
Q Consensus 365 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ 443 (565)
.|++..-..|..+....|+..+|...|.+....-+.-|......+.++....++...|...++.+.+.... -++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555566677777778888888888887776655667777777777777788888888877777664311 01223445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 444 LITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEML 500 (565)
Q Consensus 444 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 500 (565)
+.+.+...|.+..|..-|+..+.. .|+...-......+.+.|+.+++..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 667777778888888888877765 4555544444455667776666655544443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.006 Score=43.52 Aligned_cols=63 Identities=10% Similarity=0.070 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Q 008454 193 PLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSE-RVDIALGFYKEMRR 256 (565)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~A~~~~~~m~~ 256 (565)
+.+|..+...+...|++++|+..|++..+.+.. +...|..+..++...| ++++|++.++...+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344555555666666666666666666555432 4555555556666665 46666666555543
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.027 Score=52.20 Aligned_cols=89 Identities=10% Similarity=-0.006 Sum_probs=40.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCH
Q 008454 204 AHRKKFRNATDTFCQMRDYGFLPI--IESCNKFLSSLLDSERVDIALGFYKEMRRNRI--SPNVYTLNMVMHAFCKLGII 279 (565)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~ 279 (565)
.+.|++++|+..|+.+.+...... ..++..+...|...|++++|...|+.+.+.-. +.....+..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 334555555555555544332110 23444455555555555555555555543211 01122333334444455555
Q ss_pred HHHHHHHHHHHhC
Q 008454 280 ERAVEVFKNMESM 292 (565)
Q Consensus 280 ~~a~~~~~~m~~~ 292 (565)
++|.++|+.+.+.
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.097 Score=48.20 Aligned_cols=99 Identities=14% Similarity=0.129 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 008454 402 DILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVR---KNSERAFQLYKSMIRSGCRPNKHIFEM 478 (565)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~~ 478 (565)
|...|-.|...|...|+.+.|..-|.+..+.... +...+..+..++... ....++.++|++++... +-|..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 5555555666666666666666555555543222 444444444433322 22345556666665543 334444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 479 LMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 479 li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
|...+...|++.+|...|+.|++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555666666666666666554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0088 Score=42.65 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNE-DFDRAAEVLLEML 500 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~ 500 (565)
.|..+...+...|++++|+..|++.++.. +-+...|..+..++...| ++++|.+.+++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444444444444444432 223334444444444444 3444444444443
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.64 Score=44.38 Aligned_cols=280 Identities=13% Similarity=0.080 Sum_probs=172.6
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCh
Q 008454 241 SERVDIALGFYKEMRRNRISPNVYTLNMVMHA--FCKLGIIERAVEVFKNMESMGFIPSVTTYN----TLISGHCNKGLL 314 (565)
Q Consensus 241 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~ 314 (565)
.|+-..|.++-.+-.+. +..|..-.-.++.+ -.-.|+++.|.+-|+.|.. |..+-. .|.-...+.|..
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence 45666666665554321 23344444444433 2346899999999999886 333322 233334567888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHHHh---cCChHHHH
Q 008454 315 SLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATN-VSPNVVT--YNTLINGYGQ---VGNSEMGA 388 (565)
Q Consensus 315 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~--~~~li~~~~~---~g~~~~A~ 388 (565)
+.|..+-+..-..-.. -...+...+...|..|+|+.|+++++.-.... +.++..- -..|+.+-.. ..+...|.
T Consensus 171 eaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 8888888877665322 35677888899999999999999998766532 2333322 1223322111 22455555
Q ss_pred HHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 389 SLYEEMLRNGIKVDILT-YNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 389 ~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
..-.+..+ ..||..- --.-..++.+.|+..++-.+++.+-+....|+. +. +..+.+.|+ .+..-+++....
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC--cHHHHHHHHHHH
Confidence 55444444 3444322 233456788999999999999999887655553 22 223445554 344333333321
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 008454 468 -GCRP-NKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHC-GKDELAMKLFRKMEIR 537 (565)
Q Consensus 468 -~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 537 (565)
.++| +....-.+..+-...|++..|..--+...+ ..|....|-.|.+.-... |+-.++..++.+..+.
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1233 456666777778888999888777666655 467888888887766554 9999999988887655
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.038 Score=51.23 Aligned_cols=88 Identities=9% Similarity=0.050 Sum_probs=37.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCH
Q 008454 414 CKEGKTKKAAYLVKDLDKNSLVPN--ASTYSALITGQCVRKNSERAFQLYKSMIRSG--CRPNKHIFEMLMSTFCQNEDF 489 (565)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~ 489 (565)
.+.|++++|...|+.+.+....-. ...+-.+...|...|++++|...|+.+++.- -+.....+-.+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344555555555555544321100 1234444444455555555555555554320 001122223333334444555
Q ss_pred HHHHHHHHHHHH
Q 008454 490 DRAAEVLLEMLE 501 (565)
Q Consensus 490 ~~A~~~~~~~~~ 501 (565)
++|..+|+++++
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555544444
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.66 Score=44.46 Aligned_cols=107 Identities=16% Similarity=0.150 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008454 370 TYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQC 449 (565)
Q Consensus 370 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 449 (565)
+.+..|.-+...|+...|.++-.+.. .||..-|..-+.+|+..+++++-..+... + -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHH
Confidence 44555666777888888777766552 36888888899999999999877765432 1 24466888899999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 450 VRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVL 496 (565)
Q Consensus 450 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 496 (565)
+.|+..+|..+...+ + +..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHH
Confidence 999988888887762 1 244566788889998887764
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.71 Score=44.10 Aligned_cols=308 Identities=11% Similarity=0.088 Sum_probs=168.7
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH--hCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHH
Q 008454 118 KDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILT--KNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLV 195 (565)
Q Consensus 118 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (565)
..+..+.+.|....+..+ |..+...+. ..|+-..|+.+-.+..+. ...|..-
T Consensus 67 ~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l-------------------lssDqep 120 (531)
T COG3898 67 ESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL-------------------LSSDQEP 120 (531)
T ss_pred hCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh-------------------hhccchH
Confidence 355666677765555433 555544444 446767777665554332 1112222
Q ss_pred HHHH--HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH----HHcCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008454 196 FDLL--FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSS----LLDSERVDIALGFYKEMRRNRISPNVYTLNMV 269 (565)
Q Consensus 196 ~~~l--i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~----~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 269 (565)
.-.| .++-.-.|+++.|.+-|+.|.+ |.++-..=+++ --+.|..+.|...-+..-+.- +--.+.+...
T Consensus 121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~At 194 (531)
T COG3898 121 LIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARAT 194 (531)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHH
Confidence 2222 3344456899999999999986 44443332232 335677888877777765432 2235677888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHHH---hcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q 008454 270 MHAFCKLGIIERAVEVFKNMESMG-FIPSVTT--YNTLISGHC---NKGLLSLAMKFKNLMEKNGIQPNVITFN-TLIFG 342 (565)
Q Consensus 270 i~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~--~~~li~~~~---~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~ 342 (565)
+...|..|+++.|+++++.-.... +.++..- -..|+.+-. -..+...|...-.+..+ +.|+.+--. .-..+
T Consensus 195 Le~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAra 272 (531)
T COG3898 195 LEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARA 272 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHH
Confidence 888899999999999888765442 2333321 112222111 11234444444444333 344543322 23467
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 008454 343 FCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRN-GIKV-DILTYNALILGLCKEGKTK 420 (565)
Q Consensus 343 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~-~~~~~~~li~~~~~~g~~~ 420 (565)
+.+.|+..++-.+++.+-+....|+. + .+..+.+.|+. +..-++...+. ..+| +......+..+-...|++.
T Consensus 273 lf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 273 LFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 77788888888888887776434432 2 22233344443 33333332211 1222 4455556666666777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHc
Q 008454 421 KAAYLVKDLDKNSLVPNASTYSALITGQCV-RKNSERAFQLYKSMIRS 467 (565)
Q Consensus 421 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~ 467 (565)
.|..--+..... .|....|-.|...-.. .|+-.++...+.+.+..
T Consensus 347 ~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 347 AARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 666555555432 4666666666655433 37777777777766653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.38 E-value=1.7 Score=45.87 Aligned_cols=184 Identities=15% Similarity=0.192 Sum_probs=121.5
Q ss_pred CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 139 TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (565)
.......-+..+.+...++.|..+...-... ... -..........+.+.|++++|.+-|-+
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d------~d~-------------~~~i~~kYgd~Ly~Kgdf~~A~~qYI~ 393 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKSQHLD------EDT-------------LAEIHRKYGDYLYGKGDFDEATDQYIE 393 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHhcCCC------HHH-------------HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3445566788888888888887766432111 011 112334455667789999999998877
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC
Q 008454 219 MRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFI-PS 297 (565)
Q Consensus 219 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~ 297 (565)
....- .| ..++.-|....+...-...++.+.+.|+. +...-..|+.+|.+.++.++-.+..+.-. .|.. -|
T Consensus 394 tI~~l-e~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd 465 (933)
T KOG2114|consen 394 TIGFL-EP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD 465 (933)
T ss_pred HcccC-Ch-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee
Confidence 66531 12 23566777778888888899999988875 66777889999999999998887776655 3322 12
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 298 VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMK 360 (565)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 360 (565)
....+..+.+.+-.++|..+-..... +......+ +-..+++++|++++..+.
T Consensus 466 ---~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 466 ---VETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred ---HHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 23466667777777777766655443 23333333 345678888888887653
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.38 E-value=1.1 Score=43.69 Aligned_cols=143 Identities=12% Similarity=0.128 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 008454 403 ILTYNALILGLCKEGKTKKAAYLVKDLDKNS-LVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIF-EMLM 480 (565)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~li 480 (565)
..+|...++...+..-++.|..+|-++.+.+ ..+++..++++|..++ .|+...|..+|+--+.+ .||...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456777888888888999999999999988 5667778899888665 57778899999877765 4565554 4566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHh
Q 008454 481 STFCQNEDFDRAAEVLLEMLEKCMAPD--SIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTIN 551 (565)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 551 (565)
.-+...++-+.|..+|+..+++ +..+ ..+|..+|.--..-|+...+..+-++|.+. .|...+.....+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~S 543 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTS 543 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHH
Confidence 6777889999999999977665 3334 468999999889999998888888887553 344433333333
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.2 Score=42.04 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHHH
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEML-----EKCMAPDSIIL 511 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~ 511 (565)
....++..+...|++++|..+.+.++... +-+...|..+|.++...|+..+|.++|+++. +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34556666777888888888888888765 5677788888888888888888888887764 34777776653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.36 Score=40.53 Aligned_cols=90 Identities=12% Similarity=0.045 Sum_probs=53.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 008454 410 ILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDF 489 (565)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 489 (565)
..-+...|++++|..+|.-+...+.. +..-|..|..++-..+++++|+..|......+ .-|...+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 33345566777777777666554443 45555556666666666777776666655543 23333344455566666777
Q ss_pred HHHHHHHHHHHH
Q 008454 490 DRAAEVLLEMLE 501 (565)
Q Consensus 490 ~~A~~~~~~~~~ 501 (565)
+.|...|+..++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 777776666655
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.56 Score=41.79 Aligned_cols=208 Identities=10% Similarity=0.060 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 139 TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (565)
-...|..-..++-..++|+.|...+.+..+... ..+.+|. - .+-++.|.-+.++
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yE--nnrslfh------------------A------AKayEqaamLake 83 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYE--NNRSLFH------------------A------AKAYEQAAMLAKE 83 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH--hcccHHH------------------H------HHHHHHHHHHHHH
Confidence 345666677777788899999888877765311 1111111 1 1233444444555
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---C--
Q 008454 219 MRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM---G-- 293 (565)
Q Consensus 219 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g-- 293 (565)
+.+.. --+..|+.-...|..+|..+.|-..++..-+ ..+.-+.++|+++|++.... +
T Consensus 84 ~~kls--Evvdl~eKAs~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr 145 (308)
T KOG1585|consen 84 LSKLS--EVVDLYEKASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDR 145 (308)
T ss_pred HHHhH--HHHHHHHHHHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccch
Confidence 44421 1234455556677777777777666665432 11233445555555543221 1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CC
Q 008454 294 FIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNG----IQPN-VITFNTLIFGFCKKGKLHEANRIFSEMKATN---VS 365 (565)
Q Consensus 294 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~ 365 (565)
...-...|..+-..+.+...+++|-..+.+-.... --++ -..|-..|-.+.-..++..|.+.++.-.+.+ -+
T Consensus 146 ~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~s 225 (308)
T KOG1585|consen 146 DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKS 225 (308)
T ss_pred HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccCh
Confidence 00112233344455666666666655444322110 0111 1224444455555667777777777644432 22
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHH
Q 008454 366 PNVVTYNTLINGYGQVGNSEMGASLY 391 (565)
Q Consensus 366 ~~~~~~~~li~~~~~~g~~~~A~~~~ 391 (565)
-+..+...|+.+| ..||.+++.+++
T Consensus 226 ed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 226 EDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3455666666665 456666665544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.79 Score=41.44 Aligned_cols=179 Identities=12% Similarity=0.115 Sum_probs=100.3
Q ss_pred HhhcCChHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCC
Q 008454 114 LKVQKDYVLSLEFFTWVQTHKPSSL-TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSS 192 (565)
Q Consensus 114 ~~~~~~~~~al~~f~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (565)
....+++..|.+.|+.+.++.|+.+ ...+.-.++-+.-+.+++++|...++++++.. +..+.-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly----------------P~~~n~ 107 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY----------------PTHPNA 107 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC----------------CCCCCh
Confidence 3456799999999999999887643 56777778888899999999999999999872 222222
Q ss_pred hHHHHHHHHHHHhc-------CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHH
Q 008454 193 PLVFDLLFKTYAHR-------KKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYT 265 (565)
Q Consensus 193 ~~~~~~li~~~~~~-------g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 265 (565)
-|..-|.+++.- .|...+.+.|..+.+ ++.-|-...-..+|......+... =...
T Consensus 108 --dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~ 169 (254)
T COG4105 108 --DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA----LAGH 169 (254)
T ss_pred --hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH----HHHH
Confidence 233334444311 222222222222221 222222222233333333322210 0001
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 008454 266 LNMVMHAFCKLGIIERAVEVFKNMESMGFIPS---VTTYNTLISGHCNKGLLSLAMKFKNLMEKN 327 (565)
Q Consensus 266 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 327 (565)
=..+.+.|.+.|.+..|..-++.|.+. .+-+ ...+-.+..+|...|-.++|.+.-.-+..+
T Consensus 170 Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 170 EMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 123445667777777777777777765 2212 233444556677777777776666655544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.86 Score=41.21 Aligned_cols=81 Identities=7% Similarity=-0.095 Sum_probs=47.7
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 143 HSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDY 222 (565)
Q Consensus 143 ~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 222 (565)
+..-+......|++++|...|+.+.... +..+-...+--.++.++.+.+++++|+..+++....
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~----------------p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRH----------------PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC----------------CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3334444556777777777777776552 222334455556667777778888888877777665
Q ss_pred CCCcCHHHHHHHHHHHH
Q 008454 223 GFLPIIESCNKFLSSLL 239 (565)
Q Consensus 223 ~~~p~~~~~~~ll~~~~ 239 (565)
........|-..|.+++
T Consensus 101 yP~~~n~dY~~YlkgLs 117 (254)
T COG4105 101 YPTHPNADYAYYLKGLS 117 (254)
T ss_pred CCCCCChhHHHHHHHHH
Confidence 43322333444444444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.21 Score=41.91 Aligned_cols=89 Identities=16% Similarity=0.007 Sum_probs=55.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008454 341 FGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTK 420 (565)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 420 (565)
.-+...|++++|..+|.-+.-.+ .-|..-+..|..++-..+++++|...|......+. -|...+-....+|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 33456677777777777666543 33444455556666666777777777766655443 24444555666777777777
Q ss_pred HHHHHHHHHHh
Q 008454 421 KAAYLVKDLDK 431 (565)
Q Consensus 421 ~A~~~~~~~~~ 431 (565)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77777776665
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.032 Score=40.21 Aligned_cols=55 Identities=13% Similarity=0.039 Sum_probs=27.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 008454 202 TYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRN 257 (565)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 257 (565)
.|.+.+++++|+++++.+...+.. +...|......+.+.|++++|...|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344445555555555555544332 4444444555555555555555555555443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.05 E-value=1.2 Score=41.18 Aligned_cols=143 Identities=13% Similarity=0.080 Sum_probs=70.2
Q ss_pred HHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC
Q 008454 148 HILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPI 227 (565)
Q Consensus 148 ~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~ 227 (565)
.-+...+++.+|..+|...... .+.+..+--.++.+|...|+++.|..++..+....-...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~-------------------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~ 202 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA-------------------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA 202 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh-------------------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH
Confidence 3444556666666666666554 233445555667777777777777777776654321111
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHH
Q 008454 228 IESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM--GFIPSVTTYNTLI 305 (565)
Q Consensus 228 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li 305 (565)
......-+..+.+.....+..++-.+.-.. +-|...-..+...+...|+.++|.+.+-.+.++ |.. |...-..|+
T Consensus 203 ~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~ll 279 (304)
T COG3118 203 AHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLL 279 (304)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHH
Confidence 111112233333333333333333333221 124455555555666666666666655554433 222 334444455
Q ss_pred HHHHhcC
Q 008454 306 SGHCNKG 312 (565)
Q Consensus 306 ~~~~~~g 312 (565)
..+.-.|
T Consensus 280 e~f~~~g 286 (304)
T COG3118 280 ELFEAFG 286 (304)
T ss_pred HHHHhcC
Confidence 5444444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.023 Score=41.64 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 475 IFEMLMSTFCQNEDFDRAAEVLLEMLEK--CMA---PD-SIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
+|+.+...|...|++++|+..+++.++. ... |+ ..++..+..++...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455555555555555555555555432 011 11 234555555555566666666555554
|
... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.24 Score=49.70 Aligned_cols=168 Identities=11% Similarity=0.058 Sum_probs=92.7
Q ss_pred CCChHHHHHHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHH
Q 008454 103 HLTPFRVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSI 182 (565)
Q Consensus 103 ~l~~~~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~ 182 (565)
.+++..+.--....++++..+++...--.--+ .........++..|.+.|..+.|+.+...-.
T Consensus 260 ~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~--~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------------- 322 (443)
T PF04053_consen 260 ELDLSELEFKTAVLRGDFEEVLRMIAASNLLP--NIPKDQGQSIARFLEKKGYPELALQFVTDPD--------------- 322 (443)
T ss_dssp E--HHHHHHHHHHHTT-HHH-----HHHHTGG--G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH---------------
T ss_pred EECHHHHHHHHHHHcCChhhhhhhhhhhhhcc--cCChhHHHHHHHHHHHCCCHHHHHhhcCChH---------------
Confidence 55666666666677788877665553111111 1234557777888888888888777653211
Q ss_pred HHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 008454 183 LYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPN 262 (565)
Q Consensus 183 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~ 262 (565)
.-.....+.|+++.|.++.++. .+...|..|.....+.|+++.|.+.|.+..
T Consensus 323 ---------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------- 374 (443)
T PF04053_consen 323 ---------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK------- 374 (443)
T ss_dssp ---------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------
T ss_pred ---------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-------
Confidence 1234445567777776654433 256677777777777777777777776653
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008454 263 VYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNL 323 (565)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 323 (565)
-|..|+-.|.-.|+.+...++.+.....|- ++....++.-.|+.++..+++.+
T Consensus 375 --d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 375 --DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ---HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred --CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 245566666677777766666666665542 33444445555666666655543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.12 Score=41.73 Aligned_cols=82 Identities=12% Similarity=0.047 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 437 NASTYSALITGQCVRKNSERAFQLYKSMIRS---------------GCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 437 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
|..++..+|.++++.|+.+....+++..-.- ...|+..+..+++.+|+..|++..|+++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567777888888888877777777654321 1235555666666666666666666666655543
Q ss_pred c-CCCCCHHHHHHHHHHH
Q 008454 502 K-CMAPDSIILSELYSGL 518 (565)
Q Consensus 502 ~-~~~p~~~~~~~li~~~ 518 (565)
. +++.+..+|..|++-.
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 2 4555555566555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.055 Score=38.94 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=22.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 448 QCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 448 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
|.+.+++++|.++++.++..+ +.+...+.....++.+.|++++|.+.+++..+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444444444444444432 22333333344444444444444444444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.15 Score=46.31 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 142 THSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRD 221 (565)
Q Consensus 142 ~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 221 (565)
.|..-+ -+.+.|++..|...|...++. |+.....+..+.-|..++...|++++|..+|..+.+
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~----------------YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKK----------------YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHc----------------CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 444433 445677788888888888887 344555666777788888888888888888888866
Q ss_pred CCCC-c-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 008454 222 YGFL-P-IIESCNKFLSSLLDSERVDIALGFYKEMRRN 257 (565)
Q Consensus 222 ~~~~-p-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 257 (565)
.... | -++++--|.....+.|+.++|...|+++.+.
T Consensus 207 ~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 207 DYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred hCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5322 2 3467777788888888888888888888764
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.81 E-value=3.9 Score=45.04 Aligned_cols=28 Identities=25% Similarity=0.218 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCC--ChHHHHHHHHHHHH
Q 008454 229 ESCNKFLSSLLDSE--RVDIALGFYKEMRR 256 (565)
Q Consensus 229 ~~~~~ll~~~~~~~--~~~~A~~~~~~m~~ 256 (565)
.....++.+|++.+ ..+.|+....+...
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 44556677777766 56666666666553
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.17 Score=40.94 Aligned_cols=49 Identities=10% Similarity=0.194 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 008454 329 IQPNVITFNTLIFGFCKKGKLHEANRIFSEMKAT-NVSPNVVTYNTLING 377 (565)
Q Consensus 329 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~ 377 (565)
..|+..+..+++.+|+..|++..|+++++...+. +++.+..+|..|++-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3445555555555555555555555555544332 344444445544443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.79 Score=36.65 Aligned_cols=57 Identities=21% Similarity=0.173 Sum_probs=20.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008454 411 LGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSG 468 (565)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 468 (565)
..+...|+-++-.+++.++.+ +-.+++...-.+..+|.+.|+..++-+++.++-++|
T Consensus 94 d~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333344444444444444332 112333334444444444444444444444444333
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.036 Score=40.56 Aligned_cols=62 Identities=16% Similarity=0.256 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRS--GCR---PN-KHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
+|+.+...|...|++++|+..|++.++. ... |+ ..++..+..++...|++++|++++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666666666666666666666542 011 11 34566666667777777777777766543
|
... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.25 Score=44.94 Aligned_cols=97 Identities=11% Similarity=0.078 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC-CCC-HHHHHHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGFL--PIIESCNKFLSSLLDSERVDIALGFYKEMRRNRI-SPN-VYTLNMVM 270 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~p~-~~~~~~li 270 (565)
.|+.-+. +.+.|++..|.+.|....+.... -...++-.|...+...|++++|...|..+.+.-. .|. ...+.-|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 5555444 45678899999999999987643 1356677799999999999999999999976422 222 36777888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC
Q 008454 271 HAFCKLGIIERAVEVFKNMESM 292 (565)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~m~~~ 292 (565)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 8889999999999999999876
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.18 Score=49.54 Aligned_cols=68 Identities=9% Similarity=-0.122 Sum_probs=57.7
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPII---ESCNKFLSSLLDSERVDIALGFYKEMRRN 257 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 257 (565)
.+.++..++.+..+|.+.|++++|+..|++..+.+.. +. .+|..+..+|...|+.++|++.+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567888999999999999999999999999887633 23 35889999999999999999999998874
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.60 E-value=1.3 Score=45.21 Aligned_cols=206 Identities=13% Similarity=0.144 Sum_probs=100.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-----
Q 008454 282 AVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIF----- 356 (565)
Q Consensus 282 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----- 356 (565)
.+.-++++.++|-.|+... +...++-.|.+.+|-++|.+- |.. +..++.|...+.+|.|.+++
T Consensus 619 li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~~ 686 (1081)
T KOG1538|consen 619 LISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGDP 686 (1081)
T ss_pred HHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCCh
Confidence 3344566777777777653 345566677777777777542 221 11233344444444443333
Q ss_pred -------HHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH------HHHCCC---CCCHHHHHHHHHHHHHcCC
Q 008454 357 -------SEMKAT--NVSPNVVTYNTLINGYGQVGNSEMGASLYEE------MLRNGI---KVDILTYNALILGLCKEGK 418 (565)
Q Consensus 357 -------~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~~~---~~~~~~~~~li~~~~~~g~ 418 (565)
++--+. .+.-. .+....+...|+.++|..+.-+ +.+-+. ..+..+...+..-+.+...
T Consensus 687 ~eKKmL~RKRA~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~ 762 (1081)
T KOG1538|consen 687 KEKKMLIRKRADWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDS 762 (1081)
T ss_pred HHHHHHHHHHHHHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccc
Confidence 211110 11111 1233444556777666654321 111111 1233344444444444555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 419 TKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLE 498 (565)
Q Consensus 419 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (565)
+.-|.++|..|-. ...+++.....+++.+|+.+-+..-+. .|| +|....+.++...++++|.+
T Consensus 763 ~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaqwLAE~DrFeEAqk---- 825 (1081)
T KOG1538|consen 763 PGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQWLAENDRFEEAQK---- 825 (1081)
T ss_pred cchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHHHhhhhhhHHHHHH----
Confidence 5556666655532 123445555666666666665544332 232 23333334444555555544
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008454 499 MLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRG 538 (565)
Q Consensus 499 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 538 (565)
+|.++|+.+||.++++++....
T Consensus 826 ------------------AfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 826 ------------------AFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred ------------------HHHHhcchHHHHHHHHHhhhhh
Confidence 5666788888888888876543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.53 E-value=2.6 Score=41.01 Aligned_cols=20 Identities=5% Similarity=0.311 Sum_probs=10.9
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 008454 272 AFCKLGIIERAVEVFKNMES 291 (565)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~~ 291 (565)
.|....+++..+++++.+..
T Consensus 150 SyRdiqdydamI~Lve~l~~ 169 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEA 169 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhc
Confidence 45555555555555555554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.15 Score=46.23 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 315 SLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGK 348 (565)
Q Consensus 315 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 348 (565)
+-+.+++++|...|+.||-.+-..+++++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 4466777788888887887777777777776664
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.41 E-value=4.1 Score=42.55 Aligned_cols=313 Identities=12% Similarity=0.075 Sum_probs=172.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 197 DLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSER--VDIALGFYKEMRRNRISPNVYTLNMVMHAFC 274 (565)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 274 (565)
..++..+...+.+..|+++-..+...-.. ....|.....-+.+..+ -+++++..++=..... -....|..+.+-..
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 45677777888888888887777552222 14455555555655532 2233333333222212 23445666666667
Q ss_pred HcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----------CCCCHHHHHHH
Q 008454 275 KLGIIERAVEVFKNMESMGFI----PSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNG-----------IQPNVITFNTL 339 (565)
Q Consensus 275 ~~g~~~~a~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----------~~~~~~~~~~l 339 (565)
..|+.+-|..+++.=...+.. .+..-+...+.-+...|+.+....++-.+.+.- .+.....|..+
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~ 598 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQF 598 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 788888887776543222111 122233445556666777777776666554421 01111112111
Q ss_pred HH--------HHHHcCCHHHHHHHHH--HHHh----CCCCCCHHHHHHHHHHHHhcCChHH----------HHHHHHHHH
Q 008454 340 IF--------GFCKKGKLHEANRIFS--EMKA----TNVSPNVVTYNTLINGYGQVGNSEM----------GASLYEEML 395 (565)
Q Consensus 340 i~--------~~~~~g~~~~A~~~~~--~m~~----~~~~~~~~~~~~li~~~~~~g~~~~----------A~~~~~~m~ 395 (565)
+. .+.+.++-.++...|. ...+ .+..|+ .......+.+.....- -..+.+.+.
T Consensus 599 ~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le 675 (829)
T KOG2280|consen 599 MRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLE 675 (829)
T ss_pred HHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 11 1111222222222211 1000 111222 2233344444433211 112222222
Q ss_pred HC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 008454 396 RN-GIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKH 474 (565)
Q Consensus 396 ~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 474 (565)
.. |.....-+.+.-+.-+...|+..+|.++-.+.. .||-..|-.=+.+++..+++++-+++-+.+. .+.
T Consensus 676 ~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPI 745 (829)
T KOG2280|consen 676 DQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPI 745 (829)
T ss_pred HHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCC
Confidence 11 323334455666677778899999988877665 4788889999999999999988777766543 145
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 475 IFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRK 533 (565)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 533 (565)
-|.-++.+|.+.|+.++|.+++-+.-.. .....+|.+.|++.+|.++--+
T Consensus 746 Gy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 746 GYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred CchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHH
Confidence 5777889999999999999988654321 1567788888888888776443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.39 E-value=1.1 Score=45.81 Aligned_cols=151 Identities=11% Similarity=0.001 Sum_probs=80.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHH
Q 008454 123 SLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKT 202 (565)
Q Consensus 123 al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 202 (565)
....|+-+..-- +..+..++.+++-.|+-+.+..++....+.+.+..+...+ .-..|..++..
T Consensus 176 G~G~f~L~lSlL-----Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L------------~LL~y~~~~~~ 238 (468)
T PF10300_consen 176 GFGLFNLVLSLL-----PPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAAL------------VLLWYHLVVPS 238 (468)
T ss_pred HHHHHHHHHHhC-----CHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHH------------HHHHHHHHHHH
Confidence 344555555432 2345677788888888888888888887765544332111 11234444444
Q ss_pred HHh----cCChHHHHHHHHHHHHCCCCcCHHHHHH-HHHHHHcCCChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHH
Q 008454 203 YAH----RKKFRNATDTFCQMRDYGFLPIIESCNK-FLSSLLDSERVDIALGFYKEMRRNRI---SPNVYTLNMVMHAFC 274 (565)
Q Consensus 203 ~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~-ll~~~~~~~~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~ 274 (565)
++. ..+.+.|.++++.+.++- |+...|.. -.+.+...|++++|++.|+....... +.....+--+.-.+.
T Consensus 239 ~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~ 316 (468)
T PF10300_consen 239 FLGIDGEDVPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM 316 (468)
T ss_pred HcCCcccCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH
Confidence 433 345666777777776644 44433333 23455556777777777765442110 011122233333444
Q ss_pred HcCCHHHHHHHHHHHHhC
Q 008454 275 KLGIIERAVEVFKNMESM 292 (565)
Q Consensus 275 ~~g~~~~a~~~~~~m~~~ 292 (565)
-.+++++|.+.|..+.+.
T Consensus 317 ~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 317 FQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHchHHHHHHHHHHHHhc
Confidence 555666666666555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.38 E-value=3 Score=40.81 Aligned_cols=146 Identities=17% Similarity=0.255 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 008454 333 VITFNTLIFGFCKKGKLHEANRIFSEMKATN-VSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILT-YNALI 410 (565)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~li 410 (565)
..+|...++.-.+..-.+.|..+|-++.+.+ +.+++..++++|..++ .|+..-|..+|+--... .||... -+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567788888888888999999999999888 6678888888888776 58888999999876654 234333 35677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008454 411 LGLCKEGKTKKAAYLVKDLDKNSLVPN--ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFC 484 (565)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (565)
..+...++-+.|..+|+...++ +..+ ...|..+|..-..-|+...+..+=++|.+. .|...+.......|.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 7788899999999999965442 1112 457888888888889998888888888764 566555555555444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.15 Score=46.27 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008454 349 LHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNS 384 (565)
Q Consensus 349 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 384 (565)
-+-+++++++|...|+.||..+-..++.++++.+-.
T Consensus 139 Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 139 QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 356889999999999999999999999999887754
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.46 Score=47.78 Aligned_cols=157 Identities=16% Similarity=0.201 Sum_probs=74.6
Q ss_pred HHHHHhcCChHHHHHHHH--HHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 200 FKTYAHRKKFRNATDTFC--QMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~--~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
.+...-.|+++++.++.+ ++.. . -.....+.++..+-+.|..+.|+++..+-. + -.....+.|
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~-~--i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~---------~---rFeLAl~lg 332 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLP-N--IPKDQGQSIARFLEKKGYPELALQFVTDPD---------H---RFELALQLG 332 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH---------H---HHHHHHHCT
T ss_pred HHHHHHcCChhhhhhhhhhhhhcc-c--CChhHHHHHHHHHHHCCCHHHHHhhcCChH---------H---HhHHHHhcC
Confidence 344455566666655553 1111 1 123445666666666676666666543321 1 122334556
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008454 278 IIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFS 357 (565)
Q Consensus 278 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 357 (565)
+++.|.++.++.. +...|..|.....+.|+++-|.+.+.+..+ +..|+-.|.-.|+.+...++.+
T Consensus 333 ~L~~A~~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 333 NLDIALEIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp -HHHHHHHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred CHHHHHHHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHH
Confidence 6666665544332 555666666666666666666666655332 3344555555666666555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 358 EMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYE 392 (565)
Q Consensus 358 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 392 (565)
.....| -++....++.-.|+.++..+++.
T Consensus 398 ~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 398 IAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 555544 13333344444555555554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.33 E-value=1.5 Score=44.69 Aligned_cols=162 Identities=21% Similarity=0.245 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHH
Q 008454 371 YNTLINGYGQVGNSEMGASLYEEMLRNGIKVDI------LTYNALILGLCK----EGKTKKAAYLVKDLDKNSLVPNAST 440 (565)
Q Consensus 371 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~ 440 (565)
+..++...+-.||-+.+++.+.+..+.+-.-.+ -.|..++..++. ....+.|.++++.+.+. .|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344555556667777777777665553211111 123333333332 34677788888888775 466555
Q ss_pred HHHH-HHHHHhcCCHHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008454 441 YSAL-ITGQCVRKNSERAFQLYKSMIRSG--C-RPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYS 516 (565)
Q Consensus 441 ~~~l-i~~~~~~~~~~~A~~~~~~m~~~~--~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 516 (565)
|... .+.+...|++++|++.|++..... . +.....+--+...+.-.+++++|...|..+.+.. .....+|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 5433 345566788888888888766421 0 1223445556667777888888888888887752 223344443332
Q ss_pred -HHHhcCCH-------HHHHHHHHHHH
Q 008454 517 -GLHHCGKD-------ELAMKLFRKME 535 (565)
Q Consensus 517 -~~~~~g~~-------~~A~~~~~~m~ 535 (565)
++...|+. ++|.++|++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 34456777 78888887764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.29 E-value=1.2 Score=35.67 Aligned_cols=62 Identities=18% Similarity=0.224 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 372 NTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSL 434 (565)
Q Consensus 372 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 434 (565)
...+..+...|+-++..+++.++.+. -.+++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444555555555555555555432 234455555555555555555555555555555443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.27 E-value=4.6 Score=42.23 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008454 365 SPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSAL 444 (565)
Q Consensus 365 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 444 (565)
....-+.+--+.-+...|+..+|.++-.+.. .||...|-.=+.++...+++++-+++-+... .+.-|.-.
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhH
Confidence 3344455556666778899999988877765 4788999999999999999988777665443 24568888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 445 ITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVL 496 (565)
Q Consensus 445 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 496 (565)
+.+|.+.|+.++|.+++.+.- +.. -.+.+|.+.|++.+|.++-
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHH
Confidence 999999999999999987642 211 5678899999999987764
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.41 Score=47.10 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 402 DILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNA----STYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
+...++.+..+|.+.|++++|+..|++..+.+ |+. ..|..+..+|...|+.++|++.++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45666777777777777777777777766653 332 24666777777777777777777777664
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.16 E-value=4.5 Score=44.63 Aligned_cols=28 Identities=7% Similarity=0.171 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcC--ChHHHHHHHHHHHH
Q 008454 194 LVFDLLFKTYAHRK--KFRNATDTFCQMRD 221 (565)
Q Consensus 194 ~~~~~li~~~~~~g--~~~~A~~~~~~~~~ 221 (565)
.-.-.+|.+|++.+ ..+.|++.......
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 34456778888877 67777777766664
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.13 E-value=1.6 Score=36.16 Aligned_cols=125 Identities=12% Similarity=0.108 Sum_probs=67.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 197 DLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKL 276 (565)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 276 (565)
..++..+...+........++.+...+. .+....+.++..|++.+ ..+.++.++. ..+.+....+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3566666666777777777777776663 46667777777777653 2333344332 12333344466666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 277 GIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNK-GLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFC 344 (565)
Q Consensus 277 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 344 (565)
+-++++.-++.++.. |...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 666666666655532 11122222322 5566666555531 14445555555443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.85 Score=43.95 Aligned_cols=140 Identities=12% Similarity=0.054 Sum_probs=89.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008454 374 LINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKN 453 (565)
Q Consensus 374 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 453 (565)
-...|.+.|++..|...|++.+.. +. |...-+.++...... .-..++..+.-++.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhh
Confidence 366788888888888888887653 00 001111111111111 122356677777888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH-HHHHHH
Q 008454 454 SERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPD-SIILSELYSGLHHCGKDE-LAMKLF 531 (565)
Q Consensus 454 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~-~A~~~~ 531 (565)
+..|++.-...++.+ ++|....-.-..++...|+++.|+..|+++++. .|+ ..+-+.|+.+-.+..+.. ...++|
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888876 667777777778888889999999999888885 343 344455555544444433 346778
Q ss_pred HHHHHC
Q 008454 532 RKMEIR 537 (565)
Q Consensus 532 ~~m~~~ 537 (565)
..|...
T Consensus 350 ~~mF~k 355 (397)
T KOG0543|consen 350 ANMFAK 355 (397)
T ss_pred HHHhhc
Confidence 877644
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.55 Score=45.18 Aligned_cols=95 Identities=14% Similarity=0.034 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008454 370 TYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQC 449 (565)
Q Consensus 370 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 449 (565)
++..+..++.+.+++..|+...++.+..+. .|......=..+|...|+++.|+..|+.+.+.... |...-+-|+..--
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 455666677777777777777777777643 36666666677777777777777777777765322 3333334443333
Q ss_pred hcCCHH-HHHHHHHHHHH
Q 008454 450 VRKNSE-RAFQLYKSMIR 466 (565)
Q Consensus 450 ~~~~~~-~A~~~~~~m~~ 466 (565)
+..+.. ...++|..|..
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333332 33566666664
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.73 E-value=3.8 Score=38.61 Aligned_cols=162 Identities=11% Similarity=0.044 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008454 370 TYNTLINGYGQVGNSE---MGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALIT 446 (565)
Q Consensus 370 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 446 (565)
++..++.+|...+..+ +|..+++.+...... ...++..-+..+.+.++.+++.+.+..|...-.. ....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHH
Confidence 3455666666655443 455566666544222 2344444555555677778888888877765221 2234444444
Q ss_pred HH---HhcCCHHHHHHHHHHHHHcCCCCCHH-HHHH-HHHH---HHhcCC------HHHHHHHHHHHHHc-CCCCCHHHH
Q 008454 447 GQ---CVRKNSERAFQLYKSMIRSGCRPNKH-IFEM-LMST---FCQNED------FDRAAEVLLEMLEK-CMAPDSIIL 511 (565)
Q Consensus 447 ~~---~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~-li~~---~~~~g~------~~~A~~~~~~~~~~-~~~p~~~~~ 511 (565)
.+ .. .....|...+..++...+.|... .... ++.. ....++ .+...+++..+.+. +.+.+..+-
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 43 22 23345666666666554555543 1111 1111 111111 44444445433221 222333322
Q ss_pred H---HH----HHHHHhcCCHHHHHHHHHHH
Q 008454 512 S---EL----YSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 512 ~---~l----i~~~~~~g~~~~A~~~~~~m 534 (565)
. +| ...+.+.+++++|.++|+-.
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2 22 33456789999999999854
|
It is also involved in sporulation []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.12 Score=32.80 Aligned_cols=40 Identities=10% Similarity=-0.036 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHH
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKF 234 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 234 (565)
.++..+...|...|++++|+++|+++.+.... |...+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 45666777888888888888888888776543 55555544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.62 E-value=1.4 Score=35.21 Aligned_cols=93 Identities=14% Similarity=-0.021 Sum_probs=66.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHc
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVY---TLNMVMHAFCKL 276 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~ 276 (565)
.-+++..|+.+.|++.|.+....-.. ...+||.-..++.-.|+.++|++-+++..+..-..... .|..-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34567789999999999998875433 77889999999999999999998888877642121222 233333456667
Q ss_pred CCHHHHHHHHHHHHhCC
Q 008454 277 GIIERAVEVFKNMESMG 293 (565)
Q Consensus 277 g~~~~a~~~~~~m~~~g 293 (565)
|+-+.|..-|+..-+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 88888888887777665
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.49 E-value=2.4 Score=35.12 Aligned_cols=8 Identities=25% Similarity=0.700 Sum_probs=3.0
Q ss_pred CHHHHHHH
Q 008454 488 DFDRAAEV 495 (565)
Q Consensus 488 ~~~~A~~~ 495 (565)
+.+.|.++
T Consensus 111 d~~~a~~~ 118 (140)
T smart00299 111 NYEKAIEY 118 (140)
T ss_pred CHHHHHHH
Confidence 33333333
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=5.2 Score=39.78 Aligned_cols=145 Identities=12% Similarity=0.102 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008454 384 SEMGASLYEEMLRN-GIKVD-ILTYNALILGLCK---------EGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRK 452 (565)
Q Consensus 384 ~~~A~~~~~~m~~~-~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 452 (565)
.+.|..+|.+.... ...|+ ...|..+..++.. .....+|.++-+...+.+.. |......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 34566666666622 22332 3344433333322 22345666777777776654 7777777777667777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHH
Q 008454 453 NSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDS---IILSELYSGLHHCGKDELAMK 529 (565)
Q Consensus 453 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~ 529 (565)
+++.|..+|++....+ +....+|......+.-.|+.++|.+.+++..+. .|.. .+....++.|+.. ..++|.+
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 7888888888888763 333455555555666778888888888887664 3332 2334444566654 4566666
Q ss_pred HHHH
Q 008454 530 LFRK 533 (565)
Q Consensus 530 ~~~~ 533 (565)
+|-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 6654
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=94.27 E-value=6.5 Score=39.30 Aligned_cols=180 Identities=11% Similarity=0.065 Sum_probs=128.0
Q ss_pred CCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 138 LTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFC 217 (565)
Q Consensus 138 ~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (565)
.+....-.++.+++.+.+++-...+..+++..|. +...|-.++++|..+ ..++-..+++
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--------------------~kmal~el~q~y~en-~n~~l~~lWe 122 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--------------------SKMALLELLQCYKEN-GNEQLYSLWE 122 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--------------------hHHHHHHHHHHHHhc-CchhhHHHHH
Confidence 4555667788888888888888888888888753 667788899999988 6788889999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 218 QMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRIS-----PNVYTLNMVMHAFCKLGIIERAVEVFKNMESM 292 (565)
Q Consensus 218 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (565)
++.+..+. |++.-..|...|-+ ++-+.+..+|......-++ .-...|.-+... -..+.+..+.+..++...
T Consensus 123 r~ve~dfn-Dvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~ 198 (711)
T COG1747 123 RLVEYDFN-DVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTK 198 (711)
T ss_pred HHHHhcch-hHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHh
Confidence 99888765 66655666666655 7888888888887654222 112345555442 235677778887777654
Q ss_pred -CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008454 293 -GFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGF 343 (565)
Q Consensus 293 -g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 343 (565)
|...-.+.+.-+-.-|....++++|++++..+.+..- .|..+-..++..+
T Consensus 199 lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~l 249 (711)
T COG1747 199 LGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDE-KDVWARKEIIENL 249 (711)
T ss_pred hccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHHH
Confidence 5555677777787888899999999999997776643 2555555554433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.29 Score=45.27 Aligned_cols=78 Identities=9% Similarity=0.099 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRR-----NRISPNVYTLNM 268 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~~~~~ 268 (565)
.++..++..+...|+++.+...++++...... +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35666777777778888888888887777654 777788888888888888888877777654 577777777766
Q ss_pred HHHH
Q 008454 269 VMHA 272 (565)
Q Consensus 269 li~~ 272 (565)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6665
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.22 E-value=3.9 Score=36.56 Aligned_cols=222 Identities=18% Similarity=0.084 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 277 GIIERAVEVFKNMESMGFI-PSVTTYNTLISGHCNKGLLSLAMKFKNLMEKN-GIQPNVITFNTLIFGFCKKGKLHEANR 354 (565)
Q Consensus 277 g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~ 354 (565)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555555555443221 12445555556666666666666666655542 122344445555555556666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 355 IFSEMKATNVSPNVVTYNTLIN-GYGQVGNSEMGASLYEEMLRNGI--KVDILTYNALILGLCKEGKTKKAAYLVKDLDK 431 (565)
Q Consensus 355 ~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 431 (565)
.+.......... ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666665542222 111222222 45556666666666666544211 01222333333334445555555555555554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 432 NSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPN-KHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 432 ~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
.........+..+...+...++++.|...+...... .|+ ...+..+...+...+..+.+...+.+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 321112344444555555555555555555555543 222 22233333333344445555555555444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.13 E-value=2.4 Score=40.26 Aligned_cols=229 Identities=10% Similarity=0.091 Sum_probs=126.0
Q ss_pred HHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCC---CCHHHHHHHHHHHHH
Q 008454 273 FCKLGIIERAVEVFKNMESM--GFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKN--GIQ---PNVITFNTLIFGFCK 345 (565)
Q Consensus 273 ~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~---~~~~~~~~li~~~~~ 345 (565)
+....+.++|+..+.+...+ ...---.+|..+..+.++.|.+++++..--.-++. ... --...|..+..++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888877776543 11112456667778888888888776532211110 001 112344445555555
Q ss_pred cCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHc
Q 008454 346 KGKLHEANRIFSEMKAT-NVSP---NVVTYNTLINGYGQVGNSEMGASLYEEMLRN-----GIKVDILTYNALILGLCKE 416 (565)
Q Consensus 346 ~g~~~~A~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~ 416 (565)
.-++.+++.+-..-... |..+ ......++..++...+.++++++.|+...+. +......+|-.|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555555554443331 2222 1122334556666677888888888876643 1223456677888888888
Q ss_pred CCHHHHHHHHHHHHh----CCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHH----HHHHHHH
Q 008454 417 GKTKKAAYLVKDLDK----NSLVPNASTYS-----ALITGQCVRKNSERAFQLYKSMIRSGC-RPNKHI----FEMLMST 482 (565)
Q Consensus 417 g~~~~A~~~~~~~~~----~~~~p~~~~~~-----~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~----~~~li~~ 482 (565)
.++++|.....+..+ .++.--..-|. .|..++...|+.-.|.+.-++..+..+ .-|..+ .-.+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 888888776665432 22221111222 233456666777777766666544211 113333 3455566
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 008454 483 FCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~ 501 (565)
|...|+.+.|..-++++..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 7777888887777766654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.09 E-value=2.8 Score=41.72 Aligned_cols=64 Identities=8% Similarity=0.156 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 228 IESCNKFLSSLLDSERVDIALGFYKEMRRNRIS-PNVYTLNMVMHAFCKLGIIERAVEVFKNMES 291 (565)
Q Consensus 228 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 291 (565)
..+-..+...+.+.|+.++|.++|++|.+.... .+......|+.++...+.+.++..++.+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 333344555566667777777777776543211 1234556667777777777777777666543
|
The molecular function of this protein is uncertain. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.92 E-value=3.5 Score=35.02 Aligned_cols=136 Identities=17% Similarity=0.216 Sum_probs=78.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008454 389 SLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSG 468 (565)
Q Consensus 389 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 468 (565)
+++..+.+.++.++...+..+++.+.+.|++.... .+...++.+|.......+-.+.. ....+.++=-+|...=
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHh
Confidence 44455556677777778888888888877765443 33344455555544444433222 2233333333333320
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008454 469 CRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRG 538 (565)
Q Consensus 469 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 538 (565)
...+..+++.+...|++-+|.++.+..... +......++.+..+.+|...-..+|+-+.+.+
T Consensus 89 ----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 89 ----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 023566777777888888888887665322 12223456667777777777777777666554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.91 E-value=2.7 Score=33.62 Aligned_cols=94 Identities=6% Similarity=-0.102 Sum_probs=74.6
Q ss_pred HHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 008454 146 VLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFL 225 (565)
Q Consensus 146 l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 225 (565)
-.-+++..|+.+.|++.|.+.+.. +|..+.+||.-..++.-.|+.++|++-+++..+..-.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l-------------------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~ 109 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCL-------------------APERASAYNNRAQALRLQGDDEEALDDLNKALELAGD 109 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHh-------------------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence 345677899999999999998887 7778899999999999999999999999998775322
Q ss_pred cCHHH---HHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 008454 226 PIIES---CNKFLSSLLDSERVDIALGFYKEMRRNR 258 (565)
Q Consensus 226 p~~~~---~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 258 (565)
..-.. |..-...|...|+-+.|..-|+...+.|
T Consensus 110 ~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 110 QTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred cchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 23333 3334456777899999999998887766
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.81 E-value=1.3 Score=36.30 Aligned_cols=66 Identities=8% Similarity=0.026 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 143 HSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDY 222 (565)
Q Consensus 143 ~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 222 (565)
+..-.....+.|++.+|.+.|+.+... |+..+-...+--.|+.+|.+.|++++|+..+++.++.
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~r----------------yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTR----------------YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc----------------CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 333444455667777777777666655 2223334455556777777777777777777777765
Q ss_pred CC
Q 008454 223 GF 224 (565)
Q Consensus 223 ~~ 224 (565)
..
T Consensus 77 hP 78 (142)
T PF13512_consen 77 HP 78 (142)
T ss_pred CC
Confidence 54
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.81 E-value=4.7 Score=36.02 Aligned_cols=224 Identities=17% Similarity=0.046 Sum_probs=108.4
Q ss_pred CChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 008454 242 ERVDIALGFYKEMRRNRIS-PNVYTLNMVMHAFCKLGIIERAVEVFKNMESM-GFIPSVTTYNTLISGHCNKGLLSLAMK 319 (565)
Q Consensus 242 ~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~ 319 (565)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+.+..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444444444444433211 02345555555556666666666666555431 122234444455555555566666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 320 FKNLMEKNGIQPNVITFNTLIF-GFCKKGKLHEANRIFSEMKATNV--SPNVVTYNTLINGYGQVGNSEMGASLYEEMLR 396 (565)
Q Consensus 320 ~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 396 (565)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666655543222 111222222 55566666666666666543210 01222233333334455666666666666655
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 397 NGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 397 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
.........+..+...+...++.+.|...+......... ....+..+...+...+..+.+...+......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 422113455555666666666666666666665553221 1223333333333445566666666655554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.78 E-value=5.7 Score=36.88 Aligned_cols=148 Identities=11% Similarity=0.052 Sum_probs=91.4
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008454 235 LSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLL 314 (565)
Q Consensus 235 l~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 314 (565)
.......|++.+|..+|+........ +...--.+..+|...|+++.|..++..+...--.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34556678888888888887765322 45566677888888888888888888776442111122222234445555555
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChH
Q 008454 315 SLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATN-VSPNVVTYNTLINGYGQVGNSE 385 (565)
Q Consensus 315 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~ 385 (565)
.+...+-.+.-.. +-|...-..+...+...|+.++|++.+-.+.+.. -.-|...-..++..+.-.|.-+
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 5555555555543 2266666677778888888888887776665542 1334455566666666665333
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.77 E-value=2.4 Score=34.77 Aligned_cols=84 Identities=6% Similarity=-0.025 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFL--PIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMH 271 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 271 (565)
..+-.-.....+.|++++|++.|+.+..+-.. -...+.-.++.++.+.+++++|...+++.++..+.....-|...+.
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 33334455667789999999999999886422 1456677788999999999999999999988754433345555555
Q ss_pred HHHHcC
Q 008454 272 AFCKLG 277 (565)
Q Consensus 272 ~~~~~g 277 (565)
+++...
T Consensus 91 gL~~~~ 96 (142)
T PF13512_consen 91 GLSYYE 96 (142)
T ss_pred HHHHHH
Confidence 555433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.94 Score=47.62 Aligned_cols=178 Identities=12% Similarity=0.127 Sum_probs=120.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008454 301 YNTLISGHCNKGLLSLAMKFKNLMEKNGIQPN--VITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGY 378 (565)
Q Consensus 301 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 378 (565)
...-+..+++...++.|..+.+. .+..++ ........+-+.+.|++++|...|-+-... +.| ..+|.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHh
Confidence 44567788888888888877654 222222 223344455667899999999988776643 122 2356677
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 379 GQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAF 458 (565)
Q Consensus 379 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 458 (565)
.....+.....+++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 7777888888899999999886 66677789999999999998877776544 2221 112455666677777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 459 QLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEM 499 (565)
Q Consensus 459 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 499 (565)
.+-..... +......+ +-..|++++|.+++..+
T Consensus 484 ~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 66655432 33444444 45678999999998765
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.73 E-value=3 Score=39.57 Aligned_cols=229 Identities=13% Similarity=0.094 Sum_probs=144.1
Q ss_pred HHHcCCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-H---HhCC-CCCCHHHHHHHHHHHH
Q 008454 237 SLLDSERVDIALGFYKEMRRNR--ISPNVYTLNMVMHAFCKLGIIERAVEVFKN-M---ESMG-FIPSVTTYNTLISGHC 309 (565)
Q Consensus 237 ~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-m---~~~g-~~p~~~~~~~li~~~~ 309 (565)
-+....+.++|+..+......- ...--.+|..+..+.++.|.+++++..--. | .+.. -..--..|..+..++-
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE 94 (518)
T ss_pred hHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888988888776531 112235677788888999988887654221 2 1110 0011334555556666
Q ss_pred hcCChhHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHh
Q 008454 310 NKGLLSLAMKFKNLMEKN-GIQP---NVITFNTLIFGFCKKGKLHEANRIFSEMKATN-----VSPNVVTYNTLINGYGQ 380 (565)
Q Consensus 310 ~~g~~~~a~~~~~~m~~~-g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~ 380 (565)
+.-++.+++.+-..-... |..+ -......+..++...+.++++++.|+...+.. -......|..|...|.+
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 666666666665544432 2222 12334456678888889999999999876531 12234668889999999
Q ss_pred cCChHHHHHHHHHHHH----CCCCCCHH-HH-----HHHHHHHHHcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHH
Q 008454 381 VGNSEMGASLYEEMLR----NGIKVDIL-TY-----NALILGLCKEGKTKKAAYLVKDLDK----NSLVP-NASTYSALI 445 (565)
Q Consensus 381 ~g~~~~A~~~~~~m~~----~~~~~~~~-~~-----~~li~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~li 445 (565)
..|+++|.-+..+..+ .++. |.. -| ..+.-++...|++..|.+.-++..+ .|-.+ .......+.
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 9999999887776543 2332 221 22 3345567778888888888777644 33222 223455666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 008454 446 TGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~m~~ 466 (565)
..|...|+.+.|+.-|+++..
T Consensus 254 DIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHhcccHhHHHHHHHHHHH
Confidence 778889999999988888764
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.47 E-value=4.2 Score=34.41 Aligned_cols=135 Identities=13% Similarity=0.039 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 139 TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (565)
+...|..-+. ++..++.++|..-|..+.+.|.-.- .....-.........|+...|+..|++
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~Y-----------------pvLA~mr~at~~a~kgdta~AV~aFde 119 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSY-----------------PVLARMRAATLLAQKGDTAAAVAAFDE 119 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcc-----------------hHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 3444544333 3556677777777777766652110 011112233455666777777777777
Q ss_pred HHHCCCCcCHH-H--HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 219 MRDYGFLPIIE-S--CNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMES 291 (565)
Q Consensus 219 ~~~~~~~p~~~-~--~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 291 (565)
+-.....|-.. - --.-.-.+...|.+++.....+-+-..+-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 120 ia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 120 IAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 76554444322 1 1111223445566666666555554433333333344455555566666666666666554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=5.9 Score=39.37 Aligned_cols=64 Identities=8% Similarity=-0.107 Sum_probs=29.9
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMR 255 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 255 (565)
.|+.+...+..++.-.++++.|..+|++....+.. ...+|....-.+.-.|+.++|.+.+++..
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34445445555445555555555555555544322 23333333333334455555555555533
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.05 E-value=4.9 Score=34.01 Aligned_cols=125 Identities=12% Similarity=0.121 Sum_probs=77.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH-HHHHH--HHHHHHcCC
Q 008454 203 YAHRKKFRNATDTFCQMRDYGFLP-IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVY-TLNMV--MHAFCKLGI 278 (565)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l--i~~~~~~g~ 278 (565)
+++.++.++|+.-|..+.+.|..- -+-............|+...|...|+++-.....|-.. -..-| ...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 356678888888888888766541 12223334455667788888888888876543333322 11111 122445677
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 008454 279 IERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKN 327 (565)
Q Consensus 279 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 327 (565)
++......+-+-..|-..-...-..|.-+..+.|++..|.+.|..+...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 7777777766665554445555566777777777887777777777654
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.02 E-value=13 Score=38.93 Aligned_cols=187 Identities=11% Similarity=0.053 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHH--HHH---HHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChH
Q 008454 120 YVLSLEFFTWVQTHKPSSLTLETHSIV--LHI---LTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPL 194 (565)
Q Consensus 120 ~~~al~~f~~~~~~~~~~~~~~~~~~l--~~~---l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (565)
...|.++|+.+..... ......+ +.. .+..++.+.|..+++.+.+. |.... ....+.
T Consensus 228 ~~~a~~~~~~~a~~g~----~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~---------~~~~a-----~~~~~~ 289 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH----SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAES---------FKKAA-----TKGLPP 289 (552)
T ss_pred hhHHHHHHHHHHhhcc----hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHH---------HHHHH-----hhcCCc
Confidence 4568888887766442 2222222 222 23567899999999988772 00000 011334
Q ss_pred HHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc---CCChHHHHHHHHHHHHCCCCCCHHHH
Q 008454 195 VFDLLFKTYAHRK-----KFRNATDTFCQMRDYGFLPIIESCNKFLSSLLD---SERVDIALGFYKEMRRNRISPNVYTL 266 (565)
Q Consensus 195 ~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~ 266 (565)
....+..+|.+.. +.+.|+.+|.+.-+.|.+ +.... +...+.. ..+...|.++|....+.|.. ....+
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHH
Confidence 5556777777643 667799999999888754 43332 3333322 24577899999998887732 22222
Q ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 008454 267 NMVMHAFC--KLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQ 330 (565)
Q Consensus 267 ~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 330 (565)
..++.... ...+.+.|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+...|..
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 22222111 2347888888998888887 3332222233334444 7777777777777766543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.01 E-value=14 Score=38.92 Aligned_cols=274 Identities=16% Similarity=0.091 Sum_probs=141.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHH----HH-HHHcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhc
Q 008454 244 VDIALGFYKEMRRNRISPNVYTLNMVM----HA-FCKLGIIERAVEVFKNMES-------MGFIPSVTTYNTLISGHCNK 311 (565)
Q Consensus 244 ~~~A~~~~~~m~~~~~~p~~~~~~~li----~~-~~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~ 311 (565)
...|.++++...+.| +...-..+. .+ +....+.+.|+..++...+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 346777777776655 222222222 12 3345677888888877765 44 223444566666654
Q ss_pred C-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hc
Q 008454 312 G-----LLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCK-KGKLHEANRIFSEMKATNVSPNVVTYNTLINGYG----QV 381 (565)
Q Consensus 312 g-----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~----~~ 381 (565)
. +.+.|..++....+.|. |+....-..+..... ..+...|.++|...-+.|. +. .+-.+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~--A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-IL--AIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hH--HHHHHHHHHHhCCCcC
Confidence 3 56678888888887764 344433333222222 2467788888888888773 22 2222222221 22
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hh----cCC
Q 008454 382 GNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQ----CV----RKN 453 (565)
Q Consensus 382 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~----~~----~~~ 453 (565)
.+...|..++++..+.|. |...--...+..+.. ++.+.+...+..+.+.+.. ...+-...+..- .. ..+
T Consensus 378 r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccc
Confidence 367788888888888773 222222222233333 6667666666666655543 222222211110 01 124
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhcCCHH
Q 008454 454 SERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQN----EDFDRAAEVLLEMLEKCMAPDSIILSELYSGL----HHCGKDE 525 (565)
Q Consensus 454 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~ 525 (565)
.+.+..++......| +......+...|... .+++.|...+......+ ....|+ +...+ .-.. +.
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~~~-~~ 526 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEGIKV-LH 526 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCcch-hH
Confidence 556666666666544 334444444444332 34666777776666654 222222 21111 1123 56
Q ss_pred HHHHHHHHHHHCC
Q 008454 526 LAMKLFRKMEIRG 538 (565)
Q Consensus 526 ~A~~~~~~m~~~g 538 (565)
.|.+++.+..+.+
T Consensus 527 ~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 527 LAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHhcC
Confidence 7777777665543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.93 E-value=11 Score=37.74 Aligned_cols=60 Identities=13% Similarity=0.147 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 372 NTLINGYGQVGNSEMGASLYEEMLRNGIK-VDILTYNALILGLCKEGKTKKAAYLVKDLDK 431 (565)
Q Consensus 372 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 431 (565)
..+..++.+.|+.++|.+.+.+|.+.... -.......|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34566666778888888888888764322 2344666788888888888888888777644
|
The molecular function of this protein is uncertain. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.90 E-value=3.3 Score=38.93 Aligned_cols=154 Identities=10% Similarity=-0.054 Sum_probs=105.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHH
Q 008454 204 AHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRN---RISPNVYTLNMVMHAFCKLGIIE 280 (565)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~ 280 (565)
-..|+..+|-..++++.+.-+ .|.-+++..=.++.-.|+.+.-...++++... +++--.+...++.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456888888888999887543 38888888888898899988888888887643 22222333344555666889999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008454 281 RAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPN---VITFNTLIFGFCKKGKLHEANRIFS 357 (565)
Q Consensus 281 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~ 357 (565)
+|++.-++..+.+. -|...-.++...+-..|++.++.++..+-...--... ..-|=-..-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99998888877643 3677777888888889999999887765433210000 1111122234455689999999997
Q ss_pred HH
Q 008454 358 EM 359 (565)
Q Consensus 358 ~m 359 (565)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 53
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.86 E-value=6.6 Score=37.02 Aligned_cols=162 Identities=10% Similarity=-0.016 Sum_probs=109.0
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 143 HSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDY 222 (565)
Q Consensus 143 ~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 222 (565)
...-+.++-..|++.+|....+++++. .|.+-.++.-.=.+|..+|+...-...++++...
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d-------------------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~ 166 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDD-------------------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK 166 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHh-------------------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc
Confidence 333444555677777777777777776 4556666776777888899999999999998765
Q ss_pred CCCcCHHH--H--HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCC
Q 008454 223 GFLPIIES--C--NKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM---GFI 295 (565)
Q Consensus 223 ~~~p~~~~--~--~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~ 295 (565)
.- +|... | ..+.-++...|-+++|.+.-++..+.+ +-|......+.+.+--.|++.++.+.+.+-... +.-
T Consensus 167 wn-~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~m 244 (491)
T KOG2610|consen 167 WN-ADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWM 244 (491)
T ss_pred cC-CCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhH
Confidence 21 23322 2 223344567899999999988877654 346777788888888899999999888765432 111
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008454 296 PSVTTYNTLISGHCNKGLLSLAMKFKNLME 325 (565)
Q Consensus 296 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 325 (565)
.-...|-...-.+...+.++.|+++|+.-.
T Consensus 245 lasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 245 LASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 111222233344566799999999998543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.85 E-value=5.4 Score=33.93 Aligned_cols=134 Identities=10% Similarity=0.148 Sum_probs=61.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 008454 249 GFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNG 328 (565)
Q Consensus 249 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 328 (565)
+.++.+.+.+++|+...+..++..+.+.|++... ..+...++-+|.......+-.+ .+.+..+.++--.|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH-
Confidence 3344444555666666666666666666654333 2333334444443333222111 12233334433333332
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 329 IQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLR 396 (565)
Q Consensus 329 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 396 (565)
=...+..+++.+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0012344555666666666666666554222 111223445555555555555555544443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.60 E-value=1.6 Score=40.60 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 008454 404 LTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIR-----SGCRPNKHIFEM 478 (565)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~~~~~ 478 (565)
.++..++..+...|+.+.+...++++...... +...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 35556666667777777777777777666544 666777777777777777777777766654 366666665555
Q ss_pred HHHH
Q 008454 479 LMST 482 (565)
Q Consensus 479 li~~ 482 (565)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5444
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.57 E-value=7.6 Score=34.95 Aligned_cols=16 Identities=13% Similarity=0.303 Sum_probs=7.2
Q ss_pred HHhcCCHHHHHHHHHH
Q 008454 483 FCQNEDFDRAAEVLLE 498 (565)
Q Consensus 483 ~~~~g~~~~A~~~~~~ 498 (565)
+.-..++..|...++.
T Consensus 200 ~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 200 YLYAHDYVQAEKCYRD 215 (308)
T ss_pred HhhHHHHHHHHHHhcc
Confidence 3334444444444444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.44 Score=30.15 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHhhc
Q 008454 141 ETHSIVLHILTKNRKFKSSESILRGILDS 169 (565)
Q Consensus 141 ~~~~~l~~~l~~~~~~~~a~~ll~~~~~~ 169 (565)
+++..+...+...|++++|..+++++++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46778899999999999999999999998
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.95 E-value=16 Score=37.38 Aligned_cols=183 Identities=16% Similarity=0.119 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 008454 332 NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIK--VDILTYNAL 409 (565)
Q Consensus 332 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~l 409 (565)
+..+|...+..-.+.|+++.+.-+|+...-. +..=...|-..+.-....|+.+-|..++....+-..+ |....+.+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4567777777778888888888888776532 0111223333333334447777777777666554333 223333322
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHHcCCCCCHHHHHHHHHH---
Q 008454 410 ILGLCKEGKTKKAAYLVKDLDKNSLVPNAS-TYSALITGQCVRKNSERAF---QLYKSMIRSGCRPNKHIFEMLMST--- 482 (565)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~~~~~~A~---~~~~~m~~~~~~p~~~~~~~li~~--- 482 (565)
+ .-..|++..|..+++.+...- |+.. .-..-+....+.|+.+.+. +++...... .-+......+.--
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFAR 448 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHH
Confidence 2 234578888888888887653 4433 1222233445666666666 333333322 1222222222221
Q ss_pred --HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008454 483 --FCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCG 522 (565)
Q Consensus 483 --~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 522 (565)
+.-.++.+.|..++.++.+. .+++...|..+++.....+
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 23357788888888888775 5556667777776665544
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.92 E-value=2.3 Score=36.84 Aligned_cols=63 Identities=14% Similarity=0.250 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLP--IIESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
..+..+...|++.|+.+.|++.|.++.+....+ -...+-.+++...-.+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 457788899999999999999999998875544 356677888888888888888887777654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.91 E-value=12 Score=35.61 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHH
Q 008454 281 RAVEVFKNMESMGFIPSVTTYNT 303 (565)
Q Consensus 281 ~a~~~~~~m~~~g~~p~~~~~~~ 303 (565)
+.+.+++.|.+.|+.-+..+|-+
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHH
Confidence 34455555555555555544444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.89 E-value=2.2 Score=36.96 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008454 264 YTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPS--VTTYNTLISGHCNKGLLSLAMKFKNLMEK 326 (565)
Q Consensus 264 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 326 (565)
..+..+...|++.|+.++|++.|.++.+....+. ...+..+|......+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455666667777777777777777666533322 34455566666667777777666665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.85 E-value=14 Score=36.36 Aligned_cols=62 Identities=16% Similarity=0.286 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008454 477 EMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGL 539 (565)
Q Consensus 477 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 539 (565)
..|+.-|...|+..+|...++++--- +-....++.+++.+..+.|+-...+.+++.+.+.|+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 45666666667777776666554221 122345566666666666666666666666655543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=91.83 E-value=14 Score=36.46 Aligned_cols=381 Identities=15% Similarity=0.198 Sum_probs=208.8
Q ss_pred ChHHHHHHHHhhcCChHHHHHHHH-HHhhcCCCCC-----------CHHHH-HHHHHHHHhCCCchhHHHHHHHHhhcCC
Q 008454 105 TPFRVKHVLLKVQKDYVLSLEFFT-WVQTHKPSSL-----------TLETH-SIVLHILTKNRKFKSSESILRGILDSDS 171 (565)
Q Consensus 105 ~~~~~~~~l~~~~~~~~~al~~f~-~~~~~~~~~~-----------~~~~~-~~l~~~l~~~~~~~~a~~ll~~~~~~~~ 171 (565)
--..+..+....++.+..|++.+. |-....+..+ +...+ +..++++...|.+.+++.+++++...-.
T Consensus 80 ~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll 159 (549)
T PF07079_consen 80 YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL 159 (549)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 345567777778889999998876 4433222211 11111 3457888999999999999998876511
Q ss_pred CCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhc--------CChHHHHHHH-------HHHHHC------CCCcCHHH
Q 008454 172 FDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHR--------KKFRNATDTF-------CQMRDY------GFLPIIES 230 (565)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~-------~~~~~~------~~~p~~~~ 230 (565)
+ +.+.-+..+|+.++-.+.+. ...+-+.+.| .+|... .+.|....
T Consensus 160 -k-------------rE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL 225 (549)
T PF07079_consen 160 -K-------------RECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEEL 225 (549)
T ss_pred -h-------------hhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHH
Confidence 0 12334555555533333221 1111111111 222111 22334444
Q ss_pred HHHHHHHHHcC--CChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHHHHHH
Q 008454 231 CNKFLSSLLDS--ERVDIALGFYKEMRRNRISPNVYT-LNMVMHAFCKLGIIERAVEVFKNMESMGFI----PSVTTYNT 303 (565)
Q Consensus 231 ~~~ll~~~~~~--~~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----p~~~~~~~ 303 (565)
...++..+.-. .+..--.++++...+.-+.|+-.. ...++..+.. +.+++..+-+.+....+. -=+.++..
T Consensus 226 ~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~ 303 (549)
T PF07079_consen 226 FSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGN 303 (549)
T ss_pred HHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44444444322 222333444444444434555332 2333333333 555555555544433211 13567888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHH-HH
Q 008454 304 LISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFN-------TLIFGFCK----KGKLHEANRIFSEMKATNVSPNVV-TY 371 (565)
Q Consensus 304 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-------~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~-~~ 371 (565)
++....+.++...|.+.+..+.-. .|+...-. .+-+..|. .-+..+-+.++++....++ |.. ..
T Consensus 304 ~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLv 379 (549)
T PF07079_consen 304 LLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLV 379 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHH
Confidence 888899999999999988887764 33333221 12222221 1123344555555554432 221 11
Q ss_pred HHHH---HHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHH---cCCHHHHHHHHHHHHhCCCCCC---
Q 008454 372 NTLI---NGYGQVGN-SEMGASLYEEMLRNGIKVDILTYNALI----LGLCK---EGKTKKAAYLVKDLDKNSLVPN--- 437 (565)
Q Consensus 372 ~~li---~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~~~~~~~~p~--- 437 (565)
..|+ .-+-+.|. -++|.++++.+.+-.. -|..+-|.+. .+|.+ ...+.+-.++-+-+.+.|+.|-
T Consensus 380 h~L~~~Ak~lW~~g~~dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 380 HYLVFGAKHLWEIGQCDEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 1122 22334454 8899999998887421 2333333222 22322 3345566666666777787763
Q ss_pred -HHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 008454 438 -ASTYSALITG--QCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSE 513 (565)
Q Consensus 438 -~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 513 (565)
...-|.|..+ +...|++.++.-.-..+.+ +.|+..+|..+.-++....++++|..++.. ++|+..+++.
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 3344555443 4568999988766666554 589999999999999999999999999865 4667776664
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.78 E-value=20 Score=38.13 Aligned_cols=28 Identities=0% Similarity=-0.043 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHhhc
Q 008454 142 THSIVLHILTKNRKFKSSESILRGILDS 169 (565)
Q Consensus 142 ~~~~l~~~l~~~~~~~~a~~ll~~~~~~ 169 (565)
....+|-.|.|.|..++|.++..+..+.
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~ 140 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRNQ 140 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGGG
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhh
Confidence 3456788889999999999999555444
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.04 E-value=14 Score=34.84 Aligned_cols=234 Identities=12% Similarity=0.054 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHhCCCCCCHHHHH
Q 008454 297 SVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKL----HEANRIFSEMKATNVSPNVVTYN 372 (565)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~~~~~~~~ 372 (565)
|.......+.++...|. +++...+..+.+. +|...-...+.++...|+. +++...+..+... .++...-.
T Consensus 36 d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 44444444444444443 2233333333322 2444444445555555542 3455555554322 34444444
Q ss_pred HHHHHHHhcCCh-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008454 373 TLINGYGQVGNS-----EMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITG 447 (565)
Q Consensus 373 ~li~~~~~~g~~-----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 447 (565)
..+.+++..+.. ..+...+..... .++..+-...+.++.+.++ +++...+-.+.+. ++...-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 445554444321 122233322222 2355555566666666665 3455555555442 344444444444
Q ss_pred HHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008454 448 QCVRK-NSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDEL 526 (565)
Q Consensus 448 ~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 526 (565)
+.+.+ +...+...+..++. .++..+-...+.++.+.|+. .+...+-+..+.+ + .....+.++...|.. +
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-h
Confidence 44432 13345555555553 34556666666677776663 4544444444432 2 233566677777774 5
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHhhccc
Q 008454 527 AMKLFRKMEIRGLLPKGFDKLRTINCAPE 555 (565)
Q Consensus 527 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 555 (565)
|...+.++.+. .||.......+.+|.+
T Consensus 253 a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 253 LLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 77777776653 2466666666666543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.60 E-value=15 Score=34.57 Aligned_cols=130 Identities=13% Similarity=0.117 Sum_probs=67.5
Q ss_pred HhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcC-ChHHHHHHHHHHHHC-------
Q 008454 151 TKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRK-KFRNATDTFCQMRDY------- 222 (565)
Q Consensus 151 ~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~------- 222 (565)
.+.|+++.|..++.++........| .....+ ....|+ +.......+ +++.|..++++..+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~-~~~~~L---------a~~~yn-~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~ 72 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDP-DMAEEL---------ARVCYN-IGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM 72 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCc-HHHHHH---------HHHHHH-HHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc
Confidence 4678888888888877665311111 111111 112343 334444455 888887777765442
Q ss_pred -CCCcC-----HHHHHHHHHHHHcCCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 223 -GFLPI-----IESCNKFLSSLLDSERVD---IALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM 292 (565)
Q Consensus 223 -~~~p~-----~~~~~~ll~~~~~~~~~~---~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (565)
...++ ..++..++.+|...+..+ +|..+++.+.... +-....+..-+..+.+.++.+++.+++..|...
T Consensus 73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 11122 234555666666655543 3445555553322 112344444455555566777777777777654
|
It is also involved in sporulation []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.61 Score=27.95 Aligned_cols=25 Identities=16% Similarity=0.297 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMR 220 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~ 220 (565)
|..|...|.+.|++++|+++|++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566677777777777777777643
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.31 E-value=10 Score=31.95 Aligned_cols=21 Identities=10% Similarity=0.135 Sum_probs=10.5
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 008454 202 TYAHRKKFRNATDTFCQMRDY 222 (565)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~ 222 (565)
.+.+.|+|.+|+.+|+.+.+.
T Consensus 53 l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 53 LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHhCCHHHHHHHHHHHhcc
Confidence 334445555555555555443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=89.87 E-value=0.82 Score=27.39 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 510 ILSELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 510 ~~~~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
+|..|...|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677778888888888888887743
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.66 E-value=14 Score=32.69 Aligned_cols=68 Identities=15% Similarity=0.085 Sum_probs=46.1
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRN 257 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 257 (565)
.|.-+.+||.|.-.+...|+++.|.+.|+...+.+..-+-...|.-|..| --|++..|.+-+...-+.
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhc
Confidence 44567888888888888899999999988888866443333334333333 357788877766665544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.10 E-value=21 Score=33.93 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHH
Q 008454 351 EANRIFSEMKATNVSPNVVTYNT 373 (565)
Q Consensus 351 ~A~~~~~~m~~~~~~~~~~~~~~ 373 (565)
+.+.+++.|.+.|..-+..+|-+
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHH
Confidence 34455555555555555544433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.04 E-value=0.49 Score=27.98 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=22.3
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHH
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATD 214 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~ 214 (565)
.|.++.+|+.+...|...|++++|++
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 67788999999999999999998863
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.02 E-value=37 Score=36.67 Aligned_cols=107 Identities=12% Similarity=0.114 Sum_probs=66.4
Q ss_pred HhcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHH---------------hcCCHHHHHHHHHHHHHcCCCCC
Q 008454 449 CVRKNSERAFQLYKSMIRS------GCRPNKHIFEMLMSTFC---------------QNEDFDRAAEVLLEMLEKCMAPD 507 (565)
Q Consensus 449 ~~~~~~~~A~~~~~~m~~~------~~~p~~~~~~~li~~~~---------------~~g~~~~A~~~~~~~~~~~~~p~ 507 (565)
...|.+.+|++.|+..+-. .-.-+..-...++..++ ..+..+.+.++-.-.....++|-
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 4578999999999988753 11122333334444332 12334444333333333445555
Q ss_pred HH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH-Hhhccc
Q 008454 508 SI--ILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRT-INCAPE 555 (565)
Q Consensus 508 ~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~ 555 (565)
.. +....+..+.+.+++..|..+-.++.+.+-.|+...-..- +.++.+
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~ek 1132 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAEK 1132 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhc
Confidence 44 4667788999999999999999999999888776654444 444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.60 E-value=14 Score=31.16 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=28.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 414 CKEGKTKKAAYLVKDLDKNSLV-PNASTYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
.+.++.+++..++..+.-.... |...++... .+...|++.+|..+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhcc
Confidence 3556677777777766553221 122233322 345667777777777776554
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=88.16 E-value=22 Score=33.10 Aligned_cols=133 Identities=9% Similarity=0.169 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008454 419 TKKAAYLVKDLDK-NSLVPNASTYSALITGQCV-RK-NSERAFQLYKSMIRS-GCRPNKHIFEMLMSTFCQNEDFDRAAE 494 (565)
Q Consensus 419 ~~~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~-~~-~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~ 494 (565)
+.+|+++|+.... ..+.-|..+...+++.... .+ ....-.++.+-+... |-.++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555552211 1233355556666655544 11 222233333333332 235667777777788888888888888
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCCCHhhHHHHHh
Q 008454 495 VLLEMLEK-CMAPDSIILSELYSGLHHCGKDELAMKLFRK-----MEIRGLLPKGFDKLRTIN 551 (565)
Q Consensus 495 ~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~g~~p~~~~~~~ll~ 551 (565)
+|+..... +..-|...|..+|+.....|+..-..++..+ +...|+..+...-..+-+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 88776554 5556777788888888888887666555553 233455555444444333
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.96 E-value=23 Score=32.95 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHH
Q 008454 120 YVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGI 166 (565)
Q Consensus 120 ~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~ 166 (565)
...|+++|-.+..+.+-+.+ -..++..+....+...|...|...
T Consensus 149 s~KA~ELFayLv~hkgk~v~---~~~~ie~lwpe~D~kka~s~lhTt 192 (361)
T COG3947 149 SRKALELFAYLVEHKGKEVT---SWEAIEALWPEKDEKKASSLLHTT 192 (361)
T ss_pred hhHHHHHHHHHHHhcCCccc---HhHHHHHHccccchhhHHHHHHHH
Confidence 36799999999998875444 355677788888888887776544
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=87.19 E-value=11 Score=28.70 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 421 KAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 421 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
+..+-+..+...++.|++....+.+++|.+.+++..|+++++-...+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555555666666666666666666666666666655543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.01 E-value=5.4 Score=30.04 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 422 AAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMI 465 (565)
Q Consensus 422 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 465 (565)
+.+-++.+...++.|++....+.+++|.+.+++..|.++++-..
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444455555555555555555555555555555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.86 E-value=40 Score=34.68 Aligned_cols=385 Identities=12% Similarity=0.019 Sum_probs=203.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHH
Q 008454 123 SLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKT 202 (565)
Q Consensus 123 al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 202 (565)
+...+..++...| ---.-|...+..=.+.|..+.+..+|++.+.. .+.+...|......
T Consensus 64 ~r~~y~~fL~kyP--l~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-------------------ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 64 LREVYDIFLSKYP--LCYGYWKKFADYEYKLGNAENSVKVFERGVQA-------------------IPLSVDLWLSYLAF 122 (577)
T ss_pred HHHHHHHHHhhCc--cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-------------------hhhHHHHHHHHHHH
Confidence 3344444444333 33445666777777888999999999988876 33344455444443
Q ss_pred HH-hcCChHHHHHHHHHHHHC-CCC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---Hc
Q 008454 203 YA-HRKKFRNATDTFCQMRDY-GFL-PIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFC---KL 276 (565)
Q Consensus 203 ~~-~~g~~~~A~~~~~~~~~~-~~~-p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~---~~ 276 (565)
+. ..|+.+.....|+..... |.. .+...|-..+..-..++++.....+|+++++. ....|+....-|. ..
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhc
Confidence 33 457888888888888764 322 25667888888888889999999999998864 2233333322222 11
Q ss_pred ------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHH-------HH
Q 008454 277 ------GIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNV--ITFNTL-------IF 341 (565)
Q Consensus 277 ------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~l-------i~ 341 (565)
...+++.++-....+. ......++ .+..+=..+...+.+.+. ...+.+ -.
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~--~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~ 263 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAER-------------SKITHSQE--PLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEK 263 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhh-------------hhcccccC--hhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHH
Confidence 1222322222222211 00000011 111111111111101000 000011 11
Q ss_pred HHHHcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 342 GFCKKGKLHEANRIFSEMKAT-------NVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLC 414 (565)
Q Consensus 342 ~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 414 (565)
++-......+..-.++.-... -..++..+|..-+..-...|+.+.+.-+|+...-- +..=...|-..+.-..
T Consensus 264 ~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~ 342 (577)
T KOG1258|consen 264 VYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWME 342 (577)
T ss_pred HHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHH
Confidence 122222222333333333221 11234567777888888999999999999887642 1112234444555555
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 008454 415 KEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQ-CVRKNSERAFQLYKSMIRSGCRPNKH-IFEMLMSTFCQNEDFDRA 492 (565)
Q Consensus 415 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~-~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A 492 (565)
..|+.+-|..++....+-..+ +......+-..+ -..|+++.|..+++...+. + |+.. .-..-+....+.|+.+.+
T Consensus 343 ~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~ 419 (577)
T KOG1258|consen 343 SSGDVSLANNVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDA 419 (577)
T ss_pred HcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhh
Confidence 568888888877766554332 222222222223 3467999999999999876 2 5432 222233445567787777
Q ss_pred H---HHHHHHHHcCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhcc
Q 008454 493 A---EVLLEMLEKCMAPDSIILSELYS-----GLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCAP 554 (565)
Q Consensus 493 ~---~~~~~~~~~~~~p~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 554 (565)
. +++...... -. +..+...+.- .+.-.++.+.|..++.++.+. +.++...|..+++-+.
T Consensus 420 ~~~~~l~s~~~~~-~~-~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 420 NYKNELYSSIYEG-KE-NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred hHHHHHHHHhccc-cc-CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 7 333333221 11 2222222222 233368899999999999765 3455556666665443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.28 E-value=12 Score=35.12 Aligned_cols=102 Identities=16% Similarity=0.138 Sum_probs=63.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 008454 329 IQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATN---VSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILT 405 (565)
Q Consensus 329 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 405 (565)
......+...++..-....+++.+..++-+++..- ..++...+ ++++. +-.-+.++++.++..=++.|+.||..+
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhccccchhh
Confidence 34445555555555555667777777776665431 12222111 22222 234466677777777777788888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKN 432 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (565)
++.+|+.+.+.+++.+|..+.-.|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888887777777766554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.13 E-value=0.92 Score=26.78 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHH
Q 008454 227 IIESCNKFLSSLLDSERVDIAL 248 (565)
Q Consensus 227 ~~~~~~~ll~~~~~~~~~~~A~ 248 (565)
+..+|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555555555555555555553
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.00 E-value=7.3 Score=34.08 Aligned_cols=72 Identities=17% Similarity=0.042 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHH
Q 008454 350 HEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRN---GIKVDILTYNALILGLCKEGKTKKA 422 (565)
Q Consensus 350 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A 422 (565)
++|.+.|-.+...+.--++.... .+..|....|.+++..++-...+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~-aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQY-ALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHH-HHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444444322222222 222333344555555555544432 2234555555555555555555544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.77 E-value=19 Score=29.84 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=12.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCC
Q 008454 202 TYAHRKKFRNATDTFCQMRDYG 223 (565)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~ 223 (565)
.+...|+|.+|+.+|+.+.+.+
T Consensus 53 l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 53 LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHcCCHHHHHHHHHhhhccC
Confidence 3445566666666666665543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=85.59 E-value=22 Score=37.53 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHH
Q 008454 141 ETHSIVLHILTKNRKFKSSESILRG 165 (565)
Q Consensus 141 ~~~~~l~~~l~~~~~~~~a~~ll~~ 165 (565)
..|-..+..+.-.|.+++|..++..
T Consensus 149 p~FW~~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWDYVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5666788899999999999999953
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.48 E-value=31 Score=32.09 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008454 336 FNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEML 395 (565)
Q Consensus 336 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 395 (565)
++.....|..+|.+.+|.++-+.....+ +.+...+-.++..+...||--.+.+-++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444566777777788877777776654 5666777777777777777666666666654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.08 E-value=11 Score=35.38 Aligned_cols=104 Identities=11% Similarity=0.082 Sum_probs=63.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008454 363 NVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNG---IKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNAS 439 (565)
Q Consensus 363 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 439 (565)
|.+....+...++..-....+++.+..++-++.... ..++...+ ..+.. +-.-+.++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 334445555555555555667777777777666431 11222111 12222 22335567777777777778888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRSG 468 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 468 (565)
+++.+|..+.+.+++.+|..+.-.|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888887777777766553
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.00 E-value=9 Score=33.37 Aligned_cols=91 Identities=16% Similarity=0.223 Sum_probs=60.7
Q ss_pred HHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCC-----hHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 147 LHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSS-----PLVFDLLFKTYAHRKKFRNATDTFCQMRD 221 (565)
Q Consensus 147 ~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 221 (565)
.+-+.++|++..|.+-+...+.. |++. ...|..-..++.+.+.++.|++--.+..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-------------------cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie 162 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-------------------CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE 162 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-------------------CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh
Confidence 45566788888888888877776 3332 23455556677788888888887777777
Q ss_pred CCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 008454 222 YGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRN 257 (565)
Q Consensus 222 ~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 257 (565)
.+.. ...+...-..+|.+...+++|+.-|+.+.+.
T Consensus 163 l~pt-y~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 163 LNPT-YEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred cCch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 6532 2333444455666777777777777777665
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=84.85 E-value=35 Score=32.15 Aligned_cols=17 Identities=18% Similarity=0.118 Sum_probs=7.7
Q ss_pred CHHHHHHHHHHHHHcCC
Q 008454 402 DILTYNALILGLCKEGK 418 (565)
Q Consensus 402 ~~~~~~~li~~~~~~g~ 418 (565)
+..+-...+.++.+.|+
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 34444444444444444
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.84 E-value=14 Score=32.18 Aligned_cols=92 Identities=16% Similarity=0.124 Sum_probs=58.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008454 410 ILGLCKEGKTKKAAYLVKDLDKNSLVPN----ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ 485 (565)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 485 (565)
.+-+.+.|++++|..-|..+.+.-..-. ...|..-..++.+.+.++.|++--...++.+ +........-..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 3446777888888888887776522111 1234444456667777777777777777664 2223333344556777
Q ss_pred cCCHHHHHHHHHHHHHc
Q 008454 486 NEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 486 ~g~~~~A~~~~~~~~~~ 502 (565)
...+++|+.-|.++.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 77888888888888775
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=84.69 E-value=65 Score=35.04 Aligned_cols=330 Identities=13% Similarity=0.096 Sum_probs=166.4
Q ss_pred hhHHHHHHHHhhcCCCCCc----------HHHHHHHHHhcccC--CCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008454 157 KSSESILRGILDSDSFDLP----------SKLFDSILYSYRMC--DSS-PLVFDLLFKTYAHRKKFRNATDTFCQMRDYG 223 (565)
Q Consensus 157 ~~a~~ll~~~~~~~~~~~~----------~~~~~~~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 223 (565)
+....+++++...|.+-.+ +.+|...++.-... ++. ......-...+..+|..++|++---...
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~--- 374 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGLPSEAIDHALAAG--- 374 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCChHHHHHHHHhCC---
Confidence 4455667777776644322 45555555542222 222 3344445556667777777765433322
Q ss_pred CCcCHHHHHHHHHHH----HcCCChHHHHHHHHHHHHCCCCCCHHHH----HHHHHH--HHHcCCHHHHHHHHHHHHhCC
Q 008454 224 FLPIIESCNKFLSSL----LDSERVDIALGFYKEMRRNRISPNVYTL----NMVMHA--FCKLGIIERAVEVFKNMESMG 293 (565)
Q Consensus 224 ~~p~~~~~~~ll~~~----~~~~~~~~A~~~~~~m~~~~~~p~~~~~----~~li~~--~~~~g~~~~a~~~~~~m~~~g 293 (565)
|...-..++.-+ ...++....+.+.+. + |+.... -.+..+ .....++++|..++.++...-
T Consensus 375 ---d~~~aa~lle~~~~~L~~~~~lsll~~~~~~-----l-P~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l 445 (894)
T COG2909 375 ---DPEMAADLLEQLEWQLFNGSELSLLLAWLKA-----L-PAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFL 445 (894)
T ss_pred ---CHHHHHHHHHhhhhhhhcccchHHHHHHHHh-----C-CHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHh
Confidence 222323333222 222333332222222 1 222111 122233 235678999999998877542
Q ss_pred CCCCH-------HHHHHHH-HHHHhcCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 294 FIPSV-------TTYNTLI-SGHCNKGLLSLAMKFKNLMEKN----GIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKA 361 (565)
Q Consensus 294 ~~p~~-------~~~~~li-~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 361 (565)
..|+. ..++.|- ......|++++|.++.+..... -..+....+.++..+..-.|++++|..+.....+
T Consensus 446 ~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 446 KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 22221 1333332 2334578889999888877653 1234566777888888889999999999887765
Q ss_pred CCCCCCHHHHHHHHH-----HHHhcCC--hHHHHHHHHHHHHC-----CC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHH
Q 008454 362 TNVSPNVVTYNTLIN-----GYGQVGN--SEMGASLYEEMLRN-----GI-KVDILTYNALILGLCKE-GKTKKAAYLVK 427 (565)
Q Consensus 362 ~~~~~~~~~~~~li~-----~~~~~g~--~~~A~~~~~~m~~~-----~~-~~~~~~~~~li~~~~~~-g~~~~A~~~~~ 427 (565)
..-.-+...+..+.. .+-..|. ..+....|...... .. .+-..++..+..++.+. +...++..-+.
T Consensus 526 ~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~ 605 (894)
T COG2909 526 MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIE 605 (894)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcch
Confidence 422334433332221 2334552 22233333333221 10 11233445555555542 12223333333
Q ss_pred HHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 008454 428 DLDKNSLVPNAST--YSALITGQCVRKNSERAFQLYKSMIRSGC----RPNKHIFEMLMST--FCQNEDFDRAAEVLLE 498 (565)
Q Consensus 428 ~~~~~~~~p~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~~~~----~p~~~~~~~li~~--~~~~g~~~~A~~~~~~ 498 (565)
.-......|-... +..|+......|++++|...++++..... .++..+-...+.. ....|+.+.+...+.+
T Consensus 606 ~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 606 VGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2222222222222 23677888889999999999988876422 2232222222222 2345777777666655
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.17 E-value=43 Score=32.61 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=31.0
Q ss_pred HHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 146 VLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRD 221 (565)
Q Consensus 146 l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 221 (565)
.+.+.-+.|+|+...+.+...... .++...|..+... +.|+++++....+.+..
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--------------------~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--------------------SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--------------------ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 356667788888755554433322 1122333333333 77888888887777655
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.79 E-value=2.7 Score=24.42 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDY 222 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 222 (565)
+|..+...|...|++++|++.|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4566667777777777777777776653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.78 E-value=3 Score=25.54 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 509 IILSELYSGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 509 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 536 (565)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677777888888888888888877653
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.45 E-value=16 Score=37.52 Aligned_cols=135 Identities=11% Similarity=0.042 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 140 LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQM 219 (565)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 219 (565)
.+....+++.+.+.|-.++|+++-- ....-| ....+.|+++.|.++..+.
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s~--------------------------D~d~rF----elal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELST--------------------------DPDQRF----ELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcCC--------------------------Chhhhh----hhhhhcCcHHHHHHHHHhh
Confidence 4556677777777777777766421 111112 3334557888887766554
Q ss_pred HHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008454 220 RDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVT 299 (565)
Q Consensus 220 ~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 299 (565)
.+..-|..|..+....+++..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |
T Consensus 664 ------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-- 725 (794)
T KOG0276|consen 664 ------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-- 725 (794)
T ss_pred ------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c--
Confidence 2556788888888888888888888876543 445666677777776666665666665533 2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 008454 300 TYNTLISGHCNKGLLSLAMKFKNLME 325 (565)
Q Consensus 300 ~~~~li~~~~~~g~~~~a~~~~~~m~ 325 (565)
...-+|...|+++++.+++..-.
T Consensus 726 ---~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 726 ---LAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred ---hHHHHHHHcCCHHHHHHHHHhcC
Confidence 23344666788888887776543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.60 E-value=15 Score=27.77 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008454 455 ERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELY 515 (565)
Q Consensus 455 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 515 (565)
-++.+-++.+....+.|++.+..+.+.+|.+.+|+..|.++|+....+ ...+...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 345555555555666777777777777777777777777777766544 222334555443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.24 E-value=11 Score=28.76 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008454 456 RAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYS 516 (565)
Q Consensus 456 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 516 (565)
+..+-+..+....+.|++.+..+.+.+|.+.+++..|.++|+.+..+ ..+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 44555556666667788888888888888888888888888777655 2222226665543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.72 E-value=38 Score=30.14 Aligned_cols=178 Identities=14% Similarity=0.036 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHH
Q 008454 120 YVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLL 199 (565)
Q Consensus 120 ~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (565)
+..|.-=|..+....| .-++.|+.+.-.+...|+++.|.+.|+...+.. |....++-.-
T Consensus 81 ~~LAR~DftQaLai~P--~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-------------------p~y~Ya~lNR 139 (297)
T COG4785 81 RALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-------------------PTYNYAHLNR 139 (297)
T ss_pred HHHHhhhhhhhhhcCC--CcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-------------------CcchHHHhcc
Confidence 4455544555555443 457889999999999999999999999998873 2222222212
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHcCCChHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFL-PIIESCNKFLSSLLDSERVDIALGFYKE-MRRNRISPNVYTLNMVMHAFCKLG 277 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~A~~~~~~-m~~~~~~p~~~~~~~li~~~~~~g 277 (565)
.-++.--|++.-|.+-|-..-..+.. |=...|-.+.. ..-++.+|..-+.+ ..+ .|..-|...|-.+.- |
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-g 211 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-G 211 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-h
Confidence 22333458888888877777665533 11222322222 23345555443333 222 243334333322221 1
Q ss_pred CHHHHHHHHHHHHhCCCC------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 008454 278 IIERAVEVFKNMESMGFI------PSVTTYNTLISGHCNKGLLSLAMKFKNLMEKN 327 (565)
Q Consensus 278 ~~~~a~~~~~~m~~~g~~------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 327 (565)
++. ...+++.+....-. .=..||--|...+...|+.++|..+|+....+
T Consensus 212 kiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 212 KIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 111 11233333321110 01356667777788888888888888877765
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.65 E-value=1.4e+02 Score=36.63 Aligned_cols=319 Identities=12% Similarity=0.019 Sum_probs=160.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHH----HHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008454 198 LLFKTYAHRKKFRNATDTFCQM----RDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAF 273 (565)
Q Consensus 198 ~li~~~~~~g~~~~A~~~~~~~----~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 273 (565)
.+..+-.+++.+.+|+..++.- .+.. .....+..+...|..-+++|....+...-.. .|+ ...-|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHH
Confidence 4556677888999999999984 2211 1233444455588888999888777764221 122 22334456
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHH
Q 008454 274 CKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTL-IFGFCKKGKLHEA 352 (565)
Q Consensus 274 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A 352 (565)
...|++..|...|+.+.+.+.. ...+++-++......|.++.+.-..+-...+ ..+....++.+ +.+-=+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 6789999999999999876422 3667777777777777877777755555443 12233333333 3444566777776
Q ss_pred HHHHHHHHhCCCCCCHHHHHH--HHHHHHhcC--ChHHHHHHHHHHHHC--------CCCC-CHHHHHHHHHHHHHcCCH
Q 008454 353 NRIFSEMKATNVSPNVVTYNT--LINGYGQVG--NSEMGASLYEEMLRN--------GIKV-DILTYNALILGLCKEGKT 419 (565)
Q Consensus 353 ~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g--~~~~A~~~~~~m~~~--------~~~~-~~~~~~~li~~~~~~g~~ 419 (565)
...+. .. +..+|.. ++....+.. |.-.-.+..+.+.+. +..- =...|..++....-..-
T Consensus 1538 e~~l~--~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el- 1609 (2382)
T KOG0890|consen 1538 ESYLS--DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL- 1609 (2382)
T ss_pred hhhhh--cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-
Confidence 66654 11 2222222 222222222 111111222222221 1110 01233333333221111
Q ss_pred HHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHH
Q 008454 420 KKAAYLVKDLDK-NSLVPNASTYSALITGQCVRKNSERAFQLY-KSMIRSGCRP-----NKHIFEMLMSTFCQNEDFDRA 492 (565)
Q Consensus 420 ~~A~~~~~~~~~-~~~~p~~~~~~~li~~~~~~~~~~~A~~~~-~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~A 492 (565)
+...+.+..... ....-+...|..-+..-....+..+-+--+ +.+......| -..+|-...+...+.|.++.|
T Consensus 1610 ~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1610 ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 111111111100 000001111211111111111111111111 1111111111 235677777777778888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 493 AEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 493 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
...+-.+.+.+ -...+-.....+...|+...|+.++++-.+.
T Consensus 1690 ~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1690 QNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 88877776654 2344556667788888888888888887755
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.62 E-value=4 Score=23.58 Aligned_cols=28 Identities=14% Similarity=0.244 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDY 222 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 222 (565)
.+..+...|...|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666777777777777777766553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.36 E-value=27 Score=35.98 Aligned_cols=99 Identities=15% Similarity=0.158 Sum_probs=56.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 379 GQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAF 458 (565)
Q Consensus 379 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 458 (565)
.+.|+++.|.++..+.. +..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 34566666666554443 445567777777777777777776665442 445555555666655555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 459 QLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLE 498 (565)
Q Consensus 459 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (565)
.+-....+.| ..| ...-++...|+++++.+++.+
T Consensus 713 ~la~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQG-KNN-----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhc-ccc-----hHHHHHHHcCCHHHHHHHHHh
Confidence 5555555444 222 222345566777777666643
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.20 E-value=82 Score=33.71 Aligned_cols=152 Identities=13% Similarity=0.122 Sum_probs=92.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFL-PIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGI 278 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 278 (565)
++.+.+.+.+++|+++-+.....-.. .-...+..++..+...|++++|-...-.|... +..-|..-+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 67788889999999887765542211 03456778888899999999999888888754 56666666666666655
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH------------------HHHCCCCCCHHHHHHHH
Q 008454 279 IERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNL------------------MEKNGIQPNVITFNTLI 340 (565)
Q Consensus 279 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~------------------m~~~g~~~~~~~~~~li 340 (565)
..... .-+.......+...|..++..+.. .+...-.++... ..+. .-+...-..|+
T Consensus 439 l~~Ia---~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La 512 (846)
T KOG2066|consen 439 LTDIA---PYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLA 512 (846)
T ss_pred cchhh---ccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHH
Confidence 44322 222222222455667777766665 222221111111 1111 11223334578
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 008454 341 FGFCKKGKLHEANRIFSEMKA 361 (565)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~m~~ 361 (565)
..|...+++..|++++-.+++
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHccChHHHHHHHHhccC
Confidence 888889999999988876653
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.74 E-value=57 Score=35.92 Aligned_cols=115 Identities=13% Similarity=0.145 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCHHHH----
Q 008454 336 FNTLIFGFCKKGKLHEANRIFSEMKATN---VSPNVVTYNTLINGYGQVGNS--EMGASLYEEMLRNGIKVDILTY---- 406 (565)
Q Consensus 336 ~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~~~~~~~---- 406 (565)
|..|+..|...|+.++|+++|.+..... ...-...+..+++.+.+.+.. +-.+++-+...+....-....+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 5666677777777777777777665521 000111222234444333333 3333333322222111000000
Q ss_pred --------HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008454 407 --------NALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCV 450 (565)
Q Consensus 407 --------~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 450 (565)
..-+-.|+.....+-+...++.+....-.++....+.++.-|+.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 11223345556666677777776655444555566666655543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=80.67 E-value=5.6 Score=23.03 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=6.7
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 008454 481 STFCQNEDFDRAAEVLLEM 499 (565)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~ 499 (565)
.++...|++++|+..|+++
T Consensus 9 ~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 9 NAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCchHHHHHHHHH
Confidence 3333333333333333333
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.35 E-value=48 Score=30.47 Aligned_cols=159 Identities=8% Similarity=0.031 Sum_probs=84.1
Q ss_pred ChHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHH
Q 008454 119 DYVLSLEFFTWVQTHKPSSL--TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVF 196 (565)
Q Consensus 119 ~~~~al~~f~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (565)
.++.|+.-|+.+..-.|-.. ...+...++.+..+.+++++..+.+.+++.. +.+......+....
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY-------------IkSAVTrNySEKsI 108 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY-------------IKSAVTRNYSEKSI 108 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-------------HHHHHhccccHHHH
Confidence 67888888888777654332 3467778888888889888888777766543 11101112244455
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC-----CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC-----CC------C
Q 008454 197 DLLFKTYAHRKKFRNATDTFCQMRDY-----GFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRN-----RI------S 260 (565)
Q Consensus 197 ~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-----~~------~ 260 (565)
|.++.......+.+--...|+.-.+. +-..-..+-..+...|...+.+.+..++++++... |- .
T Consensus 109 N~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGt 188 (440)
T KOG1464|consen 109 NSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGT 188 (440)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccc
Confidence 66666555555544444444432221 00011122234555666666666666666665431 10 0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 261 PNVYTLNMVMHAFCKLGIIERAVEVFKNME 290 (565)
Q Consensus 261 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 290 (565)
.-...|..=|..|....+-.+...+|++..
T Consensus 189 QLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 189 QLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 012344444555555555555555555443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=80.19 E-value=33 Score=28.50 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=24.5
Q ss_pred CCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 241 SERVDIALGFYKEMRRNRIS-PNVYTLNMVMHAFCKLGIIERAVEVFKNMESM 292 (565)
Q Consensus 241 ~~~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (565)
.++.+++..+++.|.-..+. +...++...+ +...|++++|.++|+.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence 45555555555555432211 2223333333 33556666666666666554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.19 E-value=4.9 Score=24.50 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 474 HIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
.+++.|...|...|++++|..++++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677777788888888888888877754
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=80.04 E-value=89 Score=33.41 Aligned_cols=407 Identities=14% Similarity=0.155 Sum_probs=202.0
Q ss_pred HHHhhcCChHHHHHHHHHHhhcCCCCCCH-----HHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhc
Q 008454 112 VLLKVQKDYVLSLEFFTWVQTHKPSSLTL-----ETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSY 186 (565)
Q Consensus 112 ~l~~~~~~~~~al~~f~~~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~ 186 (565)
++.....+.+.|....+.+...... ++. .....++.++.+.+... |...+++.++.-.- +
T Consensus 68 iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-------------~ 132 (608)
T PF10345_consen 68 ILLEETENLDLAETYLEKAILLCER-HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-------------Y 132 (608)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-------------c
Confidence 3445566888888888876543322 222 22234556666555555 88888887765110 0
Q ss_pred ccCCCChHHHHHH-HHHHHhcCChHHHHHHHHHHHHCC---CCcCHHHHHHHHHHHH--cCCChHHHHHHHHHHHHCCC-
Q 008454 187 RMCDSSPLVFDLL-FKTYAHRKKFRNATDTFCQMRDYG---FLPIIESCNKFLSSLL--DSERVDIALGFYKEMRRNRI- 259 (565)
Q Consensus 187 ~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~ll~~~~--~~~~~~~A~~~~~~m~~~~~- 259 (565)
+ ...-...|..+ +..+...+++..|++.++.+...- ..|-+.++..++.++. ..+..+++.+.++++.....
T Consensus 133 ~-~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~ 211 (608)
T PF10345_consen 133 G-HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARS 211 (608)
T ss_pred C-chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Confidence 0 11122334444 333434489999999999886542 2334455555555544 34556777777777643211
Q ss_pred --------CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHh-------CC-CC----------------------CCH-
Q 008454 260 --------SPNVYTLNMVMHAFC--KLGIIERAVEVFKNMES-------MG-FI----------------------PSV- 298 (565)
Q Consensus 260 --------~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~-------~g-~~----------------------p~~- 298 (565)
.|-..+|..+++.++ ..|++..+...++++.+ .. .+ +..
T Consensus 212 ~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f 291 (608)
T PF10345_consen 212 LQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVF 291 (608)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEE
Confidence 235667777777655 56777777666655532 10 00 011
Q ss_pred --------HHHHHHHH--HHHhcCChhHHHHHHHH-------HH-HCCCCCC--------HHHHHHHHH---------HH
Q 008454 299 --------TTYNTLIS--GHCNKGLLSLAMKFKNL-------ME-KNGIQPN--------VITFNTLIF---------GF 343 (565)
Q Consensus 299 --------~~~~~li~--~~~~~g~~~~a~~~~~~-------m~-~~g~~~~--------~~~~~~li~---------~~ 343 (565)
....-++. ..+..|..++|.+++++ .. .....+. ...|...+. ..
T Consensus 292 ~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~ 371 (608)
T PF10345_consen 292 SWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCN 371 (608)
T ss_pred eecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 11111222 22334544455555544 33 1111111 112222221 23
Q ss_pred HHcCCHHHHHHHHHHHHhCCC-CCC-------HHHHHHHHHHHHhcCChHHHHHHHH--------HHHHCCCCCCHHHHH
Q 008454 344 CKKGKLHEANRIFSEMKATNV-SPN-------VVTYNTLINGYGQVGNSEMGASLYE--------EMLRNGIKVDILTYN 407 (565)
Q Consensus 344 ~~~g~~~~A~~~~~~m~~~~~-~~~-------~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~~~~~~~~ 407 (565)
+-.+++..|.+.++.+....- .|+ ...+....-.+...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 456889999999998886421 111 2222223333445699999999997 444555554555443
Q ss_pred HH--HHHHHH--cCCHHH--HHHHHHHHHhC-CCCC--CHHHHHHH-HHHHHhcCC--HHHHHHHHHHHHHc---CCCCC
Q 008454 408 AL--ILGLCK--EGKTKK--AAYLVKDLDKN-SLVP--NASTYSAL-ITGQCVRKN--SERAFQLYKSMIRS---GCRPN 472 (565)
Q Consensus 408 ~l--i~~~~~--~g~~~~--A~~~~~~~~~~-~~~p--~~~~~~~l-i~~~~~~~~--~~~A~~~~~~m~~~---~~~p~ 472 (565)
.+ +..+.. ....++ +..+++.+... .-.| +..+++.+ +.++..... ..++...+.+.++. ....+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 32 111222 222333 67777766542 1122 23333333 333322211 12333333222221 01111
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C--CHHHHH-----HHHHHHHhcCCHHHHHHHHHHHH
Q 008454 473 ---KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMA-P--DSIILS-----ELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 473 ---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p--~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
..+++.+...+. .|+..+..+.........-+ | ....|. .+.+.+...|+.++|.....+..
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 223343333343 67777766555444322111 2 333453 33445777899999999887764
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 565 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 7e-07 | ||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 2e-04 | ||
| 4g23_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 1e-04 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
| >pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 96.8 bits (239), Expect = 4e-21
Identities = 35/358 (9%), Positives = 91/358 (25%), Gaps = 35/358 (9%)
Query: 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGF 250
+ + A R P E + L +D+
Sbjct: 55 GEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAP 114
Query: 251 YKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCN 310
+ + ++S L + A +
Sbjct: 115 SGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR----------------- 157
Query: 311 KGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVT 370
+ + +N ++ G+ ++G E + +K ++P++++
Sbjct: 158 ---------------QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 371 YNTLINGYGQVGNSEMGASLY-EEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDL 429
Y + G+ E+M + G+K+ L L+ + K +
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262
Query: 430 DKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDF 489
+P S L+ + +L+ +++ + M +++
Sbjct: 263 SLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHL-PLKTLQCLFEKQLHMELASRVCVVSV 321
Query: 490 DRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKL 547
++ E+ + + + L ++ E R L L
Sbjct: 322 EKPTLPSKEV-KHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLL 378
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 84.1 bits (206), Expect = 5e-17
Identities = 49/429 (11%), Positives = 112/429 (26%), Gaps = 26/429 (6%)
Query: 122 LSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDS 181
L + T + L+ R+ + +L + D + +S
Sbjct: 30 LEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPES 89
Query: 182 ILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDS 241
L + + Q + F L +
Sbjct: 90 ---------PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLT 140
Query: 242 ERVDIA---LGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSV 298
+++ +A L + R+ R + N VM + + G + V V ++ G P +
Sbjct: 141 DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200
Query: 299 TTYNTLISGHCNKGLLS-LAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFS 357
+Y + + + + M + G++ + L+ + L +++
Sbjct: 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKP 260
Query: 358 EMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEG 417
P V + L+ L+ + + L +
Sbjct: 261 TFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK------QLHMELAS 314
Query: 418 KTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFE 477
+ + L + T L K RA + K+ + +
Sbjct: 315 RVCVVSVEKPTLPSKEVKHARKTLKTLR--DQWEKALCRALRETKNRLEREVYEGRFSLY 372
Query: 478 MLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537
+ D +LL++L+ + + L L ++ R
Sbjct: 373 PFLCLL----DEREVVRMLLQVLQA-LPAQGESFTTLARELSARTFSRHVVQRQRVSGQV 427
Query: 538 GLLPKGFDK 546
L + K
Sbjct: 428 QALQNHYRK 436
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 3e-10
Identities = 77/551 (13%), Positives = 158/551 (28%), Gaps = 168/551 (30%)
Query: 6 KSLLT-TVCSTKG--GAFNSLSTINIF--PFRRLSTMVTTLDKNPTFVNPSVSENSMKMN 60
K+ + VC + + IF + ++ T L+ + + N +
Sbjct: 163 KTWVALDVCLSYKVQCKMDF----KIFWLNLKNCNSPETVLEMLQKLLY-QIDPNWTSRS 217
Query: 61 RNPIPIPHRTLPEPKGQDLDFVNIA-YSH--LIHSD-WKKLTALSTHLTPFRVK-HVLLK 115
+ I R + + + + Y + L+ + F + +LL
Sbjct: 218 DHSSNIKLR-IHSIQAELRRLLKSKPYENCLLVLLNVQNA-----KAWNAFNLSCKILLT 271
Query: 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLP 175
+ V ++ + ++L+ HS+ L T +S+L LD DLP
Sbjct: 272 TRFKQV-----TDFLSAATTTHISLDHHSMTL---TP----DEVKSLLLKYLDCRPQDLP 319
Query: 176 SKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFL 235
+ ++P ++ + D + + IIES L
Sbjct: 320 R----------EVLTTNPRRLSII---AESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 236 SSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFI 295
E R+ F +L + + I
Sbjct: 367 EP--------------AEYRKM---------------FDRLSVFPPSAH----------I 387
Query: 296 PSVT--------TYNT--LISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCK 345
P++ + ++ +K +L+EK + + I+ ++
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHK---------YSLVEKQP-KESTISIPSIYLELKV 437
Query: 346 K----GKLH----EANRIFSEMKATNVSPNVVT---YNTLINGY--GQVGNSEMGASLYE 392
K LH + I + ++ P + Y+ + G+ + + E +L+
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--GHHLKNIEHPER-MTLFR 494
Query: 393 EMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRK 452
+ L + L E K + D + + S + L
Sbjct: 495 MVF--------LDFRFL------EQKIRH--------DSTAWNASGSILNTLQQ------ 526
Query: 453 NSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDF-DRAAEVLLEMLEKC------MA 505
+ YK I N +E L++ DF + E L+ MA
Sbjct: 527 -----LKFYKPYI----CDNDPKYERLVNAI---LDFLPKIEENLICSKYTDLLRIALMA 574
Query: 506 PDSIILSELYS 516
D I E +
Sbjct: 575 EDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 4e-07
Identities = 66/489 (13%), Positives = 143/489 (29%), Gaps = 125/489 (25%)
Query: 145 IVLHIL---TKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFK 201
I+ N K + + + IL + D D++ + R+ F L
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL-------FWTL-- 71
Query: 202 TYAHRKKFRNATDTFCQ---MRDYGFL--PIIESCN-KFLSSLLDSERVDIALG---FYK 252
K F + +Y FL PI + + + E+ D +
Sbjct: 72 ----LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 253 EMRRNRISP------NVYTL----NMVMH---AFCK--LGIIERAVEVFKNMESMGFIPS 297
+ +R+ P + L N+++ K + A++V + + +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-----ALDVCLSYKVQCKMDF 182
Query: 298 VTTYNTLISGHCNKGLLSLAM--KFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEA--- 352
+ L +CN L M K ++ N + + N K ++H
Sbjct: 183 KIFWLNL--KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI-------KLRIHSIQAE 233
Query: 353 -NRIFSEMKAT-------NV-SPNVV-TYN----TLI-------------NGYGQVGNSE 385
R+ NV + +N L+ +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 386 MGASLYE----EMLRN--GIKVD-----ILTYNALILGLCKEGKTKKAAYLVKDLD--KN 432
+L +L + +LT N L + A + L N
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-------AESIRDGLATWDN 346
Query: 433 SLVPNASTYSALITGQCVRKNSERAFQ-LYKSM-IRSGCRPNKHIFEMLMSTFCQNEDFD 490
N + +I + ++ ++ + + P+ HI +L+S +
Sbjct: 347 WKHVNCDKLTTII-ESSLNVLEPAEYRKMFDRLSV---FPPSAHIPTILLSLIWFDVIKS 402
Query: 491 RAAEVLLEMLEKCMA-----PDSIILSELYSGLHHCGKDELAM--------KLFRKMEIR 537
V+ ++ + + +I + +Y L ++E A+ + + +
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 538 GLLPKGFDK 546
L+P D+
Sbjct: 463 DLIPPYLDQ 471
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 565 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.69 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.62 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.61 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.61 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.6 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.5 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.49 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.49 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.48 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.46 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.45 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.42 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.41 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.39 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.39 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.38 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.34 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.34 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.33 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.32 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.31 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.3 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.25 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.23 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.19 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.16 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.15 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.13 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.09 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.06 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.03 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.02 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.98 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.98 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.98 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.97 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.97 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.97 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.94 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.94 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.93 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.92 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.9 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.89 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.88 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.85 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.83 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.81 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.81 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.81 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.8 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.8 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.79 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.79 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.79 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.79 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.76 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.74 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.72 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.71 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.71 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.66 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.66 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.64 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.61 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.56 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.55 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.55 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.54 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.53 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.52 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.5 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.5 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.5 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.49 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.49 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.46 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.46 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.46 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.46 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.45 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.44 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.44 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.43 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.41 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.39 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.39 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.38 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.38 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.37 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.36 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.34 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.33 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.27 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.27 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.25 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.25 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.24 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.24 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.22 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.21 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.18 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.18 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.18 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.18 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.17 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.17 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.17 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.16 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.15 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.11 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.11 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.1 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.1 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.09 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.05 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.04 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.0 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.97 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.96 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.93 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.93 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.93 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.9 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.89 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.87 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.84 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.84 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.82 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.82 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.76 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.75 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.66 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.66 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.65 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.65 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.65 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.62 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.56 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.51 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.47 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.47 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.4 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.39 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.33 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.31 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.22 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.22 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.08 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.92 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.79 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.62 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.57 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.5 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.36 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.35 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.19 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.18 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.1 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.02 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.95 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.95 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.8 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.35 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.18 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.12 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.02 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.82 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.79 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.56 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.5 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.18 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.01 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.81 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.57 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.33 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.01 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.97 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.56 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.94 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.22 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.02 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.34 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.22 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.82 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 89.28 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.27 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.15 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.3 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.45 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 84.45 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.01 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.71 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 82.49 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 81.94 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 81.02 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 80.83 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.05 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-35 Score=307.23 Aligned_cols=413 Identities=9% Similarity=-0.024 Sum_probs=222.1
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHH
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLV 195 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (565)
..+++..|+.+|+.+....| +..++..++.++.+.|++++|..+++++... +.++.+
T Consensus 96 ~~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------~~~~~~ 152 (597)
T 2xpi_A 96 MQQQYKCAAFVGEKVLDITG---NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--------------------NRSSAC 152 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--------------------GTCHHH
T ss_pred HccCchHHHHHHHHHHhhCC---CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--------------------ccchhH
Confidence 34577777777777765432 4566677777777777777777777766432 224555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC---------------CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDY---------------GFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRIS 260 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~ 260 (565)
++.++.+|.+.|++++|+++|+++... +...+..+|+.++.+|.+.|++++|+++|++|.+.+..
T Consensus 153 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 232 (597)
T 2xpi_A 153 RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK 232 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch
Confidence 666666666666666666666532211 11224556666666666666666666666666543211
Q ss_pred CCHHHHHHH--------------------------------------HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008454 261 PNVYTLNMV--------------------------------------MHAFCKLGIIERAVEVFKNMESMGFIPSVTTYN 302 (565)
Q Consensus 261 p~~~~~~~l--------------------------------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 302 (565)
+...+..+ +..|.+.|++++|.++|+++.+. .++..+|+
T Consensus 233 -~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 309 (597)
T 2xpi_A 233 -CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLL 309 (597)
T ss_dssp -CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHH
T ss_pred -hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHH
Confidence 22222211 22333445555555555555443 24555555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008454 303 TLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVG 382 (565)
Q Consensus 303 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 382 (565)
.++.+|.+.|++++|.++|+++.+.+. .+..++..++.++.+.|++++|.++++++.+.. +.+..+++.++..|.+.|
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhc
Confidence 555555555555555555555554432 244455555555555555555555555555432 334455555555555555
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008454 383 NSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYK 462 (565)
Q Consensus 383 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 462 (565)
++++|.++|+++.+... .+..+|+.++.+|.+.|++++|.++|+++.+.+.. +..+|+.++.+|.+.|++++|.++|+
T Consensus 388 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 388 KISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555554322 14455555555555555555555555555544322 44555555555555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 463 SMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK----CMAPD--SIILSELYSGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 463 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 536 (565)
++.+.. +.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+
T Consensus 466 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 466 SSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 555542 334555555555555555555555555555443 33444 44555555555555555555555555554
Q ss_pred CCCCCCHhhHHHHHhhcccCCCcc
Q 008454 537 RGLLPKGFDKLRTINCAPENGEKE 560 (565)
Q Consensus 537 ~g~~p~~~~~~~ll~~~~~~g~~~ 560 (565)
.+ ..+..++..+..++...|+.+
T Consensus 545 ~~-p~~~~~~~~l~~~~~~~g~~~ 567 (597)
T 2xpi_A 545 LS-TNDANVHTAIALVYLHKKIPG 567 (597)
T ss_dssp HS-SCCHHHHHHHHHHHHHTTCHH
T ss_pred hC-CCChHHHHHHHHHHHHhCCHH
Confidence 43 224455555555555555544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=295.05 Aligned_cols=424 Identities=11% Similarity=0.045 Sum_probs=355.0
Q ss_pred HhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCCh
Q 008454 114 LKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSP 193 (565)
Q Consensus 114 ~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (565)
....+++..|+.+|+.+... +.+..++..++.++.+.|++++|..+|+++......... .-.+...-...+.+.
T Consensus 127 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 200 (597)
T 2xpi_A 127 YCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKN---ANKLLMQDGGIKLEA 200 (597)
T ss_dssp HHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-------------CCCSSCCHHH
T ss_pred HHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccc---cccccccccccchhH
Confidence 45567999999999988654 357889999999999999999999999854332100000 000000000123367
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHH--------------------------------------H
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKF--------------------------------------L 235 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--------------------------------------l 235 (565)
.+|+.++.+|.+.|++++|+++|++|.+.+.. +...+..+ +
T Consensus 201 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 89999999999999999999999999887643 44444433 4
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 008454 236 SSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLS 315 (565)
Q Consensus 236 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 315 (565)
..|.+.|++++|.++|+++.+. +++..+++.++.+|.+.|++++|.++|+++.+.+.. +..++..++.++.+.|+++
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHH
T ss_pred HHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHH
Confidence 5566788999999999998765 579999999999999999999999999999987643 7888999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008454 316 LAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEML 395 (565)
Q Consensus 316 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 395 (565)
+|.++++++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.
T Consensus 357 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 434 (597)
T 2xpi_A 357 KLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434 (597)
T ss_dssp HHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998654 4578999999999999999999999999998764 4568899999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC
Q 008454 396 RNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRS----GCRP 471 (565)
Q Consensus 396 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p 471 (565)
+.+. .+..+|+.++.+|.+.|++++|.++|+++.+.... +..+|+.++..|.+.|++++|.++|+++.+. +..|
T Consensus 435 ~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p 512 (597)
T 2xpi_A 435 RLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512 (597)
T ss_dssp HTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch
Confidence 8754 37889999999999999999999999999886543 7899999999999999999999999999886 6678
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHH
Q 008454 472 N--KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLP-KGFDKLR 548 (565)
Q Consensus 472 ~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ 548 (565)
+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++|.+.|+++.+.. | +...+..
T Consensus 513 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~ 589 (597)
T 2xpi_A 513 KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS--PNEIMASDL 589 (597)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCChHHHHH
Confidence 7 7899999999999999999999999999874 4478999999999999999999999999998764 4 4556655
Q ss_pred HHhhcc
Q 008454 549 TINCAP 554 (565)
Q Consensus 549 ll~~~~ 554 (565)
+..++.
T Consensus 590 l~~~~~ 595 (597)
T 2xpi_A 590 LKRALE 595 (597)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 555554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=264.30 Aligned_cols=207 Identities=15% Similarity=0.226 Sum_probs=166.6
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------h
Q 008454 315 SLAMKFKNLMEKNGIQPNV-ITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGN---------S 384 (565)
Q Consensus 315 ~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~ 384 (565)
..+..+.+++.+.+....+ ..++.+|++|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3445566777777665443 45788889999999999999999999999999999999999999887654 5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 385 EMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSM 464 (565)
Q Consensus 385 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 464 (565)
+.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 77888888888888888988999999999998999999999998888888888888999999888888888999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008454 465 IRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHC 521 (565)
Q Consensus 465 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 521 (565)
.+.|+.||..+|+.||.+|++.|+.++|.+++++|.+.+..|+..||+.++..|+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888888898889999998888899999999998888888888888888888888764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-27 Score=234.19 Aligned_cols=382 Identities=13% Similarity=0.043 Sum_probs=330.9
Q ss_pred HHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 008454 146 VLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFL 225 (565)
Q Consensus 146 l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 225 (565)
++..+.+.|++++|...++.+.+. .|.+...+..+...+...|++++|...++...+...
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~-------------------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p- 64 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ-------------------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP- 64 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-
Confidence 345667889999999999988877 556778888899999999999999999999988653
Q ss_pred cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008454 226 PIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLI 305 (565)
Q Consensus 226 p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 305 (565)
.+..+|..+...+.+.|++++|+..|+++.+.. +.+...|..+..++.+.|++++|.+.|+++.+.... +...+..+.
T Consensus 65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 142 (388)
T 1w3b_A 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLG 142 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 378999999999999999999999999998753 335678999999999999999999999999886432 456777888
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 008454 306 SGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSE 385 (565)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 385 (565)
..+...|++++|.+.++++.+.. +.+..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|+++
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHH
Confidence 89999999999999999998864 3367899999999999999999999999999875 456788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 386 MGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMI 465 (565)
Q Consensus 386 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 465 (565)
+|...+++..+.... +..++..+...|.+.|++++|...|+++.+.+.. +..+|..+...+.+.|++++|.+.|++++
T Consensus 221 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 221 RAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999886433 6889999999999999999999999999987543 67789999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-Hh
Q 008454 466 RSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPK-GF 544 (565)
Q Consensus 466 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 544 (565)
+.. +.+..++..+...+.+.|++++|...++++.+. .+.+..++..+..+|.+.|++++|.+.|+++.+. .|+ ..
T Consensus 299 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~ 374 (388)
T 1w3b_A 299 RLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFAD 374 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHH
T ss_pred hhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHH
Confidence 874 678899999999999999999999999999886 3446788999999999999999999999999864 454 45
Q ss_pred hHHHHHhhcccCC
Q 008454 545 DKLRTINCAPENG 557 (565)
Q Consensus 545 ~~~~ll~~~~~~g 557 (565)
.+..+..++.+.|
T Consensus 375 a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 375 AYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHcc
Confidence 5655555555444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-30 Score=260.47 Aligned_cols=208 Identities=18% Similarity=0.283 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---------H
Q 008454 280 ERAVEVFKNMESMGFIPSV-TTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGK---------L 349 (565)
Q Consensus 280 ~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---------~ 349 (565)
..+..+.+++.+.+..... ..++.+|++|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4455666777777766554 45888999999999999999999999999999999999999999987664 7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008454 350 HEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDL 429 (565)
Q Consensus 350 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 429 (565)
++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008454 430 DKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNE 487 (565)
Q Consensus 430 ~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 487 (565)
.+.|+.||..+|+.||.+|++.|+.++|.+++++|.+.|+.|+..||+.++..|+..+
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999998643
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-26 Score=231.60 Aligned_cols=381 Identities=12% Similarity=0.045 Sum_probs=331.6
Q ss_pred HHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCC
Q 008454 113 LLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSS 192 (565)
Q Consensus 113 l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (565)
.....++++.|++.|+.+.+..| .+...+..+..++...|++++|...++..++. .+.+
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-------------------~p~~ 66 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-------------------NPLL 66 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------------CCCc
Confidence 34567899999999999888765 56778888999999999999999999988876 5668
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 193 PLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHA 272 (565)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 272 (565)
..+|..+...|.+.|++++|++.|+++.+.... +..+|..+...+.+.|++++|.+.|+++.+.. +.+...+..+...
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNL 144 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 889999999999999999999999999886533 67789999999999999999999999998764 2345677888888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008454 273 FCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEA 352 (565)
Q Consensus 273 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 352 (565)
+...|++++|.+.|+++.+.... +..+|..+...+.+.|++++|...++++.+.+. .+...|..+...+...|++++|
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A 222 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRA 222 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999886433 688999999999999999999999999998753 3678899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 353 NRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKN 432 (565)
Q Consensus 353 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (565)
...+++..+.. +.+..++..+...+.+.|++++|...|+++.+.+.. +..+|..+...+.+.|++++|...++++.+.
T Consensus 223 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 223 VAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999988764 446788999999999999999999999999987543 6788999999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008454 433 SLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILS 512 (565)
Q Consensus 433 ~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (565)
.. .+..++..+...+...|++++|.+.++++++.. +.+..++..+..++.+.|++++|...++++++.. +.+...|.
T Consensus 301 ~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~ 377 (388)
T 1w3b_A 301 CP-THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYS 377 (388)
T ss_dssp CT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHH
T ss_pred Cc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 43 478899999999999999999999999999863 5568899999999999999999999999999853 23566777
Q ss_pred HHHHHHHhcCC
Q 008454 513 ELYSGLHHCGK 523 (565)
Q Consensus 513 ~li~~~~~~g~ 523 (565)
.+...+...|+
T Consensus 378 ~lg~~~~~~~~ 388 (388)
T 1w3b_A 378 NMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTCC
T ss_pred hHHHHHHHccC
Confidence 77777766553
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-22 Score=204.16 Aligned_cols=365 Identities=13% Similarity=0.053 Sum_probs=297.9
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNM 268 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 268 (565)
.+.+...+..++..|.+.|++++|+..|+++.+.... +..++..+...+...|++++|+..|+++.+.+ +.+...+..
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 99 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQ 99 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 5667888999999999999999999999999886543 78999999999999999999999999998865 346889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 008454 269 VMHAFCKLGIIERAVEVFKNMESMGFIPSV---TTYNTL------------ISGHCNKGLLSLAMKFKNLMEKNGIQPNV 333 (565)
Q Consensus 269 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 333 (565)
+..+|.+.|++++|.+.|+++.+.... +. ..+..+ ...+.+.|++++|...++++.+.. +.+.
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 177 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA 177 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 999999999999999999999986422 33 555555 444889999999999999998864 3478
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH----
Q 008454 334 ITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNAL---- 409 (565)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l---- 409 (565)
..+..+..+|.+.|++++|+++|+++.+.. +.+..++..++..|...|++++|...|+++.+.... +...+..+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~ 255 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHH
Confidence 889999999999999999999999998764 557889999999999999999999999999876432 45555444
Q ss_pred --------HHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008454 410 --------ILGLCKEGKTKKAAYLVKDLDKNSLVPN----ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFE 477 (565)
Q Consensus 410 --------i~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 477 (565)
+..+.+.|++++|...|+.+.+.... + ...|..+...+.+.|++++|+..++++++.. +.+..+|.
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 88999999999999999999875322 2 4478889999999999999999999999864 55789999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH------------HHhcC-----CHHHHHHHHHHH-HHCC-
Q 008454 478 MLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSG------------LHHCG-----KDELAMKLFRKM-EIRG- 538 (565)
Q Consensus 478 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~------------~~~~g-----~~~~A~~~~~~m-~~~g- 538 (565)
.+..+|...|++++|...++++++.. +-+...+..+..+ |...| +.+++.+.|+++ .+..
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCG
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999853 2245566666532 33344 667788888874 3331
Q ss_pred -CCCCH-------hhHHHHHhhcccCCCccCC
Q 008454 539 -LLPKG-------FDKLRTINCAPENGEKESG 562 (565)
Q Consensus 539 -~~p~~-------~~~~~ll~~~~~~g~~~~~ 562 (565)
..|+. ..+..+..++...||.++.
T Consensus 413 d~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 413 DNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp GGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 11222 3677777888888887754
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-22 Score=210.11 Aligned_cols=376 Identities=10% Similarity=-0.044 Sum_probs=312.2
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 140 LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQM 219 (565)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 219 (565)
.+.+......+.+.|++++|...++++++.. +++.++..++.+|.+.|++++|++.|+++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------p~~~~~~~la~~~~~~g~~~~A~~~~~~a 65 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--------------------EDPVFYSNLSACYVSVGDLKKVVEMSTKA 65 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------------------ccHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 4567788889999999999999999999872 36788999999999999999999999999
Q ss_pred HHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC--------------------------------------
Q 008454 220 RDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISP-------------------------------------- 261 (565)
Q Consensus 220 ~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p-------------------------------------- 261 (565)
.+.+.. +..+|..+..++...|++++|...|+.+...+...
T Consensus 66 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 144 (514)
T 2gw1_A 66 LELKPD-YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELS 144 (514)
T ss_dssp HHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------
T ss_pred hccChH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 887643 77899999999999999999999999987654210
Q ss_pred ----------------------------------------CHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----CC
Q 008454 262 ----------------------------------------NVYTLNMVMHAFCK---LGIIERAVEVFKNMES-----MG 293 (565)
Q Consensus 262 ----------------------------------------~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g 293 (565)
+...+......+.. .|++++|...++++.+ ..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 224 (514)
T 2gw1_A 145 TQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc
Confidence 12233333333333 7999999999999987 31
Q ss_pred CC--------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 294 FI--------PSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVS 365 (565)
Q Consensus 294 ~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 365 (565)
-. .+...+..+...+...|++++|..+++++.+... +...+..+...+...|++++|.+.++++.+.. +
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 301 (514)
T 2gw1_A 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-S 301 (514)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-T
T ss_pred cCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-c
Confidence 11 2356778888999999999999999999988753 38888999999999999999999999998764 4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008454 366 PNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALI 445 (565)
Q Consensus 366 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 445 (565)
.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++.+.+.... +...+..+.
T Consensus 302 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 379 (514)
T 2gw1_A 302 NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFA 379 (514)
T ss_dssp TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHH
Confidence 56778899999999999999999999999987544 6778899999999999999999999999876433 567889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008454 446 TGQCVRKNSERAFQLYKSMIRSGC-RPN----KHIFEMLMSTFCQ---NEDFDRAAEVLLEMLEKCMAPDSIILSELYSG 517 (565)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 517 (565)
..+...|++++|...++++.+... .++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...
T Consensus 380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 458 (514)
T 2gw1_A 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 999999999999999999987521 111 3488889999999 999999999999998864 3467788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 008454 518 LHHCGKDELAMKLFRKMEIRGLLPKGF 544 (565)
Q Consensus 518 ~~~~g~~~~A~~~~~~m~~~g~~p~~~ 544 (565)
|.+.|++++|.+.|++..+.. |+..
T Consensus 459 ~~~~g~~~~A~~~~~~a~~~~--~~~~ 483 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEESADLA--RTME 483 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--SSHH
T ss_pred HHHhcCHHHHHHHHHHHHHhc--cccH
Confidence 999999999999999998764 4443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-22 Score=201.61 Aligned_cols=334 Identities=11% Similarity=0.051 Sum_probs=272.7
Q ss_pred CCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 138 LTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFC 217 (565)
Q Consensus 138 ~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (565)
.+...+..++..+.+.|++++|..+++++++. .+.++.++..++.+|...|++++|++.|+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG-------------------DPDNYIAYYRRATVFLAMGKSKAALPDLT 84 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------------------CCccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46778888899999999999999999998876 45578889999999999999999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-H---HHHHHH------------HHHHHHcCCHHH
Q 008454 218 QMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPN-V---YTLNMV------------MHAFCKLGIIER 281 (565)
Q Consensus 218 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~-~---~~~~~l------------i~~~~~~g~~~~ 281 (565)
++.+.+.. +..++..+...+.+.|++++|...|+++.+.. |+ . ..+..+ ...+...|++++
T Consensus 85 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 85 KVIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99887644 68889999999999999999999999998753 33 3 455555 344888999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 282 AVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKA 361 (565)
Q Consensus 282 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 361 (565)
|+..++++.+... .+...+..+..+|.+.|++++|..+++++.+.. +.+..++..+...|...|++++|++.|+++.+
T Consensus 162 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 162 AIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999987643 378889999999999999999999999998764 34788999999999999999999999999987
Q ss_pred CCCCCCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 008454 362 TNVSPNVVTYNTL------------INGYGQVGNSEMGASLYEEMLRNGIKVD----ILTYNALILGLCKEGKTKKAAYL 425 (565)
Q Consensus 362 ~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~ 425 (565)
.. +.+...+..+ ...+.+.|++++|...|+++.+.... + ...+..++.++.+.|++++|...
T Consensus 240 ~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 240 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 63 3344444444 78899999999999999999885332 2 45788899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH------------HHhcC-----C
Q 008454 426 VKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMST------------FCQNE-----D 488 (565)
Q Consensus 426 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~------------~~~~g-----~ 488 (565)
++++.+... .+...|..+..+|...|++++|...++++++.. +-+...+..+..+ |...| +
T Consensus 318 ~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 318 CSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 999887543 268899999999999999999999999999863 3345666666533 33334 5
Q ss_pred HHHHHHHHHHH
Q 008454 489 FDRAAEVLLEM 499 (565)
Q Consensus 489 ~~~A~~~~~~~ 499 (565)
.+++.+.++++
T Consensus 396 ~~~~~~~y~~~ 406 (450)
T 2y4t_A 396 KQEIIKAYRKL 406 (450)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56677777763
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.5e-22 Score=203.66 Aligned_cols=366 Identities=14% Similarity=-0.037 Sum_probs=308.9
Q ss_pred HHHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccC
Q 008454 110 KHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMC 189 (565)
Q Consensus 110 ~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (565)
.+......+++..|+..|+.+....| +...+..++.++...|++++|...++++++. .
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------------~ 69 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVSVGDLKKVVEMSTKALEL-------------------K 69 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------------C
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCc---cHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-------------------C
Confidence 34455667899999999999998764 7889999999999999999999999999987 4
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc-------------------------------------------
Q 008454 190 DSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLP------------------------------------------- 226 (565)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p------------------------------------------- 226 (565)
|.+..++..++.+|.+.|++++|+..|+++...+...
T Consensus 70 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 149 (514)
T 2gw1_A 70 PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK 149 (514)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------------
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh
Confidence 5678899999999999999999999999997765310
Q ss_pred -----------------------------------CHHHHHHHHHHHHc---CCChHHHHHHHHHHHH-----CCC----
Q 008454 227 -----------------------------------IIESCNKFLSSLLD---SERVDIALGFYKEMRR-----NRI---- 259 (565)
Q Consensus 227 -----------------------------------~~~~~~~ll~~~~~---~~~~~~A~~~~~~m~~-----~~~---- 259 (565)
+...+......+.. .|++++|...|+++.+ ...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 229 (514)
T 2gw1_A 150 ERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNED 229 (514)
T ss_dssp -------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTC
T ss_pred HHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccc
Confidence 13334444444444 8999999999999987 311
Q ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 008454 260 ----SPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVIT 335 (565)
Q Consensus 260 ----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 335 (565)
+.+...+..+...+...|++++|...++++.+.... ...+..+...+...|++++|...++++.+.. +.+...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 306 (514)
T 2gw1_A 230 EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSV 306 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHH
T ss_pred cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHH
Confidence 123567888889999999999999999999887533 8888999999999999999999999998874 336788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 336 FNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCK 415 (565)
Q Consensus 336 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 415 (565)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+..
T Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 307 YYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTD 384 (514)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHH
Confidence 9999999999999999999999998864 446778899999999999999999999999886433 66789999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008454 416 EGKTKKAAYLVKDLDKNSLV-PN----ASTYSALITGQCV---RKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNE 487 (565)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 487 (565)
.|++++|...++.+.+.... ++ ...|..+...+.. .|++++|...++.+++.. +.+..++..+...+.+.|
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 99999999999998764322 11 3488899999999 999999999999999874 556888999999999999
Q ss_pred CHHHHHHHHHHHHHcC
Q 008454 488 DFDRAAEVLLEMLEKC 503 (565)
Q Consensus 488 ~~~~A~~~~~~~~~~~ 503 (565)
++++|...++++.+..
T Consensus 464 ~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 464 DIDEAITLFEESADLA 479 (514)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999999863
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.5e-21 Score=197.39 Aligned_cols=371 Identities=11% Similarity=0.028 Sum_probs=296.7
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 140 LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQM 219 (565)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 219 (565)
.+.+......+.+.|++++|...++++++. .|.++.++..+..+|.+.|++++|++.|+++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 85 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-------------------DPNEPVFYSNISACYISTGDLEKVIEFTTKA 85 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh-------------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456788888999999999999999999887 4567889999999999999999999999999
Q ss_pred HHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC-------------------------------------CC
Q 008454 220 RDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRIS-------------------------------------PN 262 (565)
Q Consensus 220 ~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~-------------------------------------p~ 262 (565)
.+.+.. +..++..+...+...|++++|...|+.+ ..... |+
T Consensus 86 l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 163 (537)
T 3fp2_A 86 LEIKPD-HSKALLRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS 163 (537)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCC
T ss_pred HhcCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch
Confidence 887644 7889999999999999999999998643 21111 11
Q ss_pred HH------------------------------HHHHHHHHH--------HHcCCHHHHHHHHHHHHhCCCCCC-------
Q 008454 263 VY------------------------------TLNMVMHAF--------CKLGIIERAVEVFKNMESMGFIPS------- 297 (565)
Q Consensus 263 ~~------------------------------~~~~li~~~--------~~~g~~~~a~~~~~~m~~~g~~p~------- 297 (565)
.. ....+...+ ...|++++|..+++++.+.... +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~ 242 (537)
T 3fp2_A 164 NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENA 242 (537)
T ss_dssp HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHH
T ss_pred HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHH
Confidence 11 111111111 1124788999999998876432 2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008454 298 VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLING 377 (565)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 377 (565)
..++..+...+...|++++|...++++.+. .|+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 319 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQM 319 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHH
Confidence 335666778888999999999999999986 4568888899999999999999999999998864 4567889999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 378 YGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERA 457 (565)
Q Consensus 378 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A 457 (565)
+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|
T Consensus 320 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 320 YFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999986543 5678999999999999999999999999886543 667889999999999999999
Q ss_pred HHHHHHHHHcC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008454 458 FQLYKSMIRSG-----CRPNKHIFEMLMSTFCQN----------EDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCG 522 (565)
Q Consensus 458 ~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 522 (565)
.+.++++++.. .......+......+... |++++|...++++.+.. +.+..++..+...|.+.|
T Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 99999988742 111223344555677777 99999999999998863 346788999999999999
Q ss_pred CHHHHHHHHHHHHHCC
Q 008454 523 KDELAMKLFRKMEIRG 538 (565)
Q Consensus 523 ~~~~A~~~~~~m~~~g 538 (565)
++++|.+.|++..+..
T Consensus 477 ~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 477 KIDEAIELFEDSAILA 492 (537)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHhC
Confidence 9999999999998764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-19 Score=186.42 Aligned_cols=365 Identities=10% Similarity=-0.014 Sum_probs=292.5
Q ss_pred HHHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccC
Q 008454 110 KHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMC 189 (565)
Q Consensus 110 ~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (565)
.+......+++..|++.|+.+....| .+...+..+..++...|++++|...++++++. .
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------------~ 89 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKALEI-------------------K 89 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------------C
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------------------C
Confidence 34455667899999999999998765 57889999999999999999999999999987 4
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-------------------------------------cCHH---
Q 008454 190 DSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFL-------------------------------------PIIE--- 229 (565)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------------------------------------p~~~--- 229 (565)
+.++.++..+..+|...|++++|++.|+.+.. ... |+..
T Consensus 90 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 168 (537)
T 3fp2_A 90 PDHSKALLRRASANESLGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA 168 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH
T ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH
Confidence 56788899999999999999999999964421 111 0100
Q ss_pred ---------------------------HHHHHHHHHHc--------CCChHHHHHHHHHHHHCCCCCC-------HHHHH
Q 008454 230 ---------------------------SCNKFLSSLLD--------SERVDIALGFYKEMRRNRISPN-------VYTLN 267 (565)
Q Consensus 230 ---------------------------~~~~ll~~~~~--------~~~~~~A~~~~~~m~~~~~~p~-------~~~~~ 267 (565)
....+...+.. .|++++|..+|+++.+.... + ..++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~ 247 (537)
T 3fp2_A 169 SFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALC 247 (537)
T ss_dssp HHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHH
T ss_pred HHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHH
Confidence 11112222211 14788999999999875422 2 23566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 268 MVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKG 347 (565)
Q Consensus 268 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 347 (565)
.+...+...|++++|.+.++++.+.. |+...+..+...+...|++++|...++++.+... .+..++..+...+...|
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcC
Confidence 77788889999999999999998864 5688889999999999999999999999988653 36888999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008454 348 KLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVK 427 (565)
Q Consensus 348 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 427 (565)
++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++
T Consensus 325 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp CHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999998864 44567899999999999999999999999998743 367789999999999999999999999
Q ss_pred HHHhCCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 428 DLDKNSL-----VPNASTYSALITGQCVR----------KNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRA 492 (565)
Q Consensus 428 ~~~~~~~-----~p~~~~~~~li~~~~~~----------~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 492 (565)
++.+... ......+..+...+... |++++|...++++++.. +.+..++..+...+.+.|++++|
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 9865321 11223345556667777 99999999999999874 56788899999999999999999
Q ss_pred HHHHHHHHHcC
Q 008454 493 AEVLLEMLEKC 503 (565)
Q Consensus 493 ~~~~~~~~~~~ 503 (565)
...|+++.+..
T Consensus 482 ~~~~~~al~~~ 492 (537)
T 3fp2_A 482 IELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998864
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-18 Score=170.47 Aligned_cols=303 Identities=14% Similarity=0.045 Sum_probs=180.4
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMH 271 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 271 (565)
++..+..+...+...|++++|+..|+++.+.... +..++..+...+...|++++|+..|+++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 3456777888899999999999999999886643 67888889999999999999999999988753 236678888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 008454 272 AFCKLGIIERAVEVFKNMESMGFI--PSVTTYNTL------------ISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFN 337 (565)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 337 (565)
.+...|++++|...++++.+.... .+...+..+ ...+...|++++|..+++++.+.. +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999988876320 133334333 355556666666666666665543 22455555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH----------
Q 008454 338 TLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYN---------- 407 (565)
Q Consensus 338 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~---------- 407 (565)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.... +...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHH
Confidence 56666666666666666666665543 334555556666666666666666666665554221 222221
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008454 408 --ALILGLCKEGKTKKAAYLVKDLDKNSLVPNA----STYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMS 481 (565)
Q Consensus 408 --~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 481 (565)
.+...+.+.|++++|...++++.+.... +. ..+..+...+...|++++|+..++++++.. +.+..++..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 1133344444555554444444433211 11 112233344444444444444444444432 223444444444
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 008454 482 TFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~ 501 (565)
.+...|++++|...++++.+
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 44444444444444444444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-18 Score=170.19 Aligned_cols=320 Identities=11% Similarity=0.028 Sum_probs=265.2
Q ss_pred CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 139 TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (565)
+.+.+..+...+...|++++|...++++++. .+.++.++..+...+...|++++|+..|++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 62 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-------------------DPDNYIAYYRRATVFLAMGKSKAALPDLTK 62 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------------------CcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3567888899999999999999999999987 456788999999999999999999999999
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC--CCHHHHHHH------------HHHHHHcCCHHHHHH
Q 008454 219 MRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRIS--PNVYTLNMV------------MHAFCKLGIIERAVE 284 (565)
Q Consensus 219 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~l------------i~~~~~~g~~~~a~~ 284 (565)
+.+.... +...+..+...+...|++++|...|+++.+.... .+...+..+ ...+...|++++|.+
T Consensus 63 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 63 VIALKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCC-cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 9887643 7789999999999999999999999999876320 134444444 578889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 285 VFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNV 364 (565)
Q Consensus 285 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 364 (565)
.++++.+... .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.+++..+..
T Consensus 142 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~- 218 (359)
T 3ieg_A 142 FLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD- 218 (359)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 9999987643 378889999999999999999999999999874 3478899999999999999999999999998764
Q ss_pred CCCHHHHH------------HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008454 365 SPNVVTYN------------TLINGYGQVGNSEMGASLYEEMLRNGIKVDI----LTYNALILGLCKEGKTKKAAYLVKD 428 (565)
Q Consensus 365 ~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~ 428 (565)
+.+...+. .+...+.+.|++++|...++++.+.... +. ..+..+..++...|++++|...+++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 219 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 33333333 2366788999999999999999986433 33 3355688899999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008454 429 LDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFC 484 (565)
Q Consensus 429 ~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (565)
+.+.... +...|..+...+...|++++|.+.|+++++.. +-+...+..+..+..
T Consensus 298 ~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 298 VLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 9886432 78899999999999999999999999999864 344566666655543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-16 Score=161.62 Aligned_cols=352 Identities=11% Similarity=0.009 Sum_probs=200.6
Q ss_pred CHHHHHHHHHHHHh----CCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHh----cCChH
Q 008454 139 TLETHSIVLHILTK----NRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAH----RKKFR 210 (565)
Q Consensus 139 ~~~~~~~l~~~l~~----~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 210 (565)
+.+++..+...+.. .+++++|..++++..+.| ++..+..|...|.. .++++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------------------~~~a~~~Lg~~y~~g~g~~~~~~ 96 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------------------YTPAEYVLGLRYMNGEGVPQDYA 96 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------------------CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHcCCCCCCCHH
Confidence 44555555555555 566666666666665543 34455555556655 56666
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 008454 211 NATDTFCQMRDYGFLPIIESCNKFLSSLLD----SERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK----LGIIERA 282 (565)
Q Consensus 211 ~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a 282 (565)
+|++.|++..+.| +...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .++.++|
T Consensus 97 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A 170 (490)
T 2xm6_A 97 QAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMA 170 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 6666666665543 44555555555555 556666666666665543 44555555555555 5566666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 008454 283 VEVFKNMESMGFIPSVTTYNTLISGHCN----KGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCK----KGKLHEANR 354 (565)
Q Consensus 283 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~ 354 (565)
.+.|++..+.| +...+..+...|.. .++.++|.+++++..+.| +...+..+...|.. .+++++|.+
T Consensus 171 ~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 171 REWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 66666665543 45555555555555 566666666666665543 34455555555554 556666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHH
Q 008454 355 IFSEMKATNVSPNVVTYNTLINGYGQ----VGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKE-----GKTKKAAYL 425 (565)
Q Consensus 355 ~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~ 425 (565)
+|++..+.+ +...+..+...|.. .++.++|...|++..+.| +...+..+...|... ++.++|...
T Consensus 245 ~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~ 318 (490)
T 2xm6_A 245 LFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISW 318 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence 666655543 34444455555554 566666666666665543 344555555555555 566666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 008454 426 VKDLDKNSLVPNASTYSALITGQCVRK---NSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ----NEDFDRAAEVLLE 498 (565)
Q Consensus 426 ~~~~~~~~~~p~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~ 498 (565)
+++..+.+ +...+..+...|...| +.++|++.|++..+.| +...+..+...|.. .+++++|...|++
T Consensus 319 ~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 392 (490)
T 2xm6_A 319 YTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRK 392 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 66665543 3344555555555444 5566666666666543 44555555555555 5666666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 008454 499 MLEKCMAPDSIILSELYSGLHH----CGKDELAMKLFRKMEIRG 538 (565)
Q Consensus 499 ~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 538 (565)
..+.+ +...+..|...|.. .++.++|...|++..+.+
T Consensus 393 A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 393 AAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 66543 34555555555555 566666666666665554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.3e-16 Score=158.61 Aligned_cols=370 Identities=12% Similarity=0.034 Sum_probs=306.1
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh----CCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCC
Q 008454 117 QKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTK----NRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSS 192 (565)
Q Consensus 117 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (565)
.+++..|+..|+.+... .+..++..+...+.. .+++++|..++++..+.| +
T Consensus 56 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---------------------~ 110 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---------------------L 110 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------------------C
T ss_pred CcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---------------------C
Confidence 67999999999998875 267888899999988 899999999999998874 5
Q ss_pred hHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCHH
Q 008454 193 PLVFDLLFKTYAH----RKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLD----SERVDIALGFYKEMRRNRISPNVY 264 (565)
Q Consensus 193 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~ 264 (565)
+..+..|...|.. .+++++|++.|++..+.| +..++..+...|.. .++.++|.+.|++..+.| +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 6777788888888 889999999999999876 67888889888887 789999999999998875 788
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHH
Q 008454 265 TLNMVMHAFCK----LGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCN----KGLLSLAMKFKNLMEKNGIQPNVITF 336 (565)
Q Consensus 265 ~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~ 336 (565)
.+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|..++++..+.| +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 88889888888 899999999999999875 67788888888886 789999999999998875 56677
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHH
Q 008454 337 NTLIFGFCK----KGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQV-----GNSEMGASLYEEMLRNGIKVDILTYN 407 (565)
Q Consensus 337 ~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~ 407 (565)
..+...|.. .+++++|++.|++..+.| +...+..+...|... ++.++|...|++..+.+ +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 778888887 899999999999998765 566777888888877 89999999999999875 557788
Q ss_pred HHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008454 408 ALILGLCKEG---KTKKAAYLVKDLDKNSLVPNASTYSALITGQCV----RKNSERAFQLYKSMIRSGCRPNKHIFEMLM 480 (565)
Q Consensus 408 ~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 480 (565)
.+...|...| +.++|...|++..+.+ +...+..|...|.. .+++++|.+.|++..+.| +...+..|.
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg 406 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 8888888866 7899999999998863 67788889998988 899999999999999875 577888888
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 481 STFCQ----NEDFDRAAEVLLEMLEKCMA-P-DSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 481 ~~~~~----~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
..|.. .++.++|...|++..+.+.. | +......+...+. .+.+.+.+..+++.++
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a~~~a~~~~~~ 467 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQAELLSQQYIEK 467 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHHHHHHHHHHHH
Confidence 88888 89999999999999987643 2 3333443433322 2344444444444433
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-18 Score=164.25 Aligned_cols=279 Identities=9% Similarity=0.005 Sum_probs=122.9
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008454 233 KFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKG 312 (565)
Q Consensus 233 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 312 (565)
.+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++.+.... +...|..+...+...|
T Consensus 27 ~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 104 (330)
T 3hym_B 27 SLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGCYYLMVG 104 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhh
Confidence 33333334444444444444443321 112223333333344444444444444444432211 2333444444444444
Q ss_pred -ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 008454 313 -LLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLY 391 (565)
Q Consensus 313 -~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 391 (565)
++++|...+++..+.. +.+...|..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|...+
T Consensus 105 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (330)
T 3hym_B 105 HKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFF 182 (330)
T ss_dssp SCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4444444444444332 1133344444444444444444444444444432 122333344444444445555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 392 EEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNS--------LVPNASTYSALITGQCVRKNSERAFQLYKS 463 (565)
Q Consensus 392 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~~~~~~A~~~~~~ 463 (565)
+++.+... .+...+..+...+...|++++|...++++.+.. ...+...+..+...+...|++++|...+++
T Consensus 183 ~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (330)
T 3hym_B 183 SQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ 261 (330)
T ss_dssp HHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44444322 134444455555555555555555555443311 011234455555555555555555555555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 464 MIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGL 518 (565)
Q Consensus 464 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 518 (565)
+++.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+..++
T Consensus 262 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 262 ALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 55542 2344455555555555555555555555555432 12344444444444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.7e-18 Score=164.01 Aligned_cols=295 Identities=13% Similarity=-0.015 Sum_probs=249.3
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNM 268 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 268 (565)
.+.++.++..++..+...|++++|+++|+++.+.... +...+..++..+...|++++|...++++.+.. +.+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 4456778888999999999999999999999887644 56677778889999999999999999998764 346788899
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 269 VMHAFCKLG-IIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKG 347 (565)
Q Consensus 269 li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 347 (565)
+...+...| ++++|.+.+++..+.... +...|..+...+...|++++|...++++.+... .+...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHh
Confidence 999999999 999999999999986533 577899999999999999999999999988743 35677778999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHcCCH
Q 008454 348 KLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNG--------IKVDILTYNALILGLCKEGKT 419 (565)
Q Consensus 348 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~g~~ 419 (565)
++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. ......++..+...+...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999998874 5567889999999999999999999999988642 133467899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHH
Q 008454 420 KKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTF-CQNEDFD 490 (565)
Q Consensus 420 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~ 490 (565)
++|...++++.+.... +...+..+...+...|++++|.+.++++++.. +.+...+..+..++ ...|+.+
T Consensus 253 ~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 253 AEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 9999999999876543 67789999999999999999999999998864 45677888888777 4556544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-18 Score=167.07 Aligned_cols=288 Identities=13% Similarity=-0.025 Sum_probs=206.9
Q ss_pred CCChHHHHH-HHHHHHHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 008454 241 SERVDIALG-FYKEMRRNRI---SPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSL 316 (565)
Q Consensus 241 ~~~~~~A~~-~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 316 (565)
.|++++|.. .|++...... ..+...+..+...+...|++++|...|+++.+... .+...+..+...+.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 6654433211 11234566666777777777777777777776543 256677777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHhc
Q 008454 317 AMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNT---------------LINGYGQV 381 (565)
Q Consensus 317 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---------------li~~~~~~ 381 (565)
|...++++.+.. +.+..++..+...+...|++++|.+.++++.... +.+...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 777777776654 2366677777777777777777777777777653 112222211 23334488
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008454 382 GNSEMGASLYEEMLRNGIKV-DILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQL 460 (565)
Q Consensus 382 g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 460 (565)
|++++|...++++.+..... +..++..+...|...|++++|...++++.+.... +...|..+...+...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998764332 5788999999999999999999999998876433 678899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhcCCHHHHHHH
Q 008454 461 YKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAP----------DSIILSELYSGLHHCGKDELAMKL 530 (565)
Q Consensus 461 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p----------~~~~~~~li~~~~~~g~~~~A~~~ 530 (565)
++++++.. +.+..++..+..++.+.|++++|...++++.+..... ...+|..+..+|...|+.++|..+
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99998874 5567889999999999999999999999987652211 267899999999999999999988
Q ss_pred HHH
Q 008454 531 FRK 533 (565)
Q Consensus 531 ~~~ 533 (565)
+++
T Consensus 353 ~~~ 355 (368)
T 1fch_A 353 DAR 355 (368)
T ss_dssp HTT
T ss_pred HHH
Confidence 764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.2e-16 Score=160.34 Aligned_cols=396 Identities=11% Similarity=0.054 Sum_probs=272.3
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHH
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLV 195 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (565)
..+++..|..+|+.+....| .+...|..++..+.+.|++++|..+|+++++. +| +...
T Consensus 24 ~~~~~~~a~~~~e~al~~~P--~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~-------------------~p-~~~l 81 (530)
T 2ooe_A 24 QNQPIDKARKTYERLVAQFP--SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK-------------------VL-HIDL 81 (530)
T ss_dssp HSSCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT-------------------CC-CHHH
T ss_pred HhCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------------------CC-ChHH
Confidence 35788889999998887654 57788888888888889999999999888876 33 5666
Q ss_pred HHHHHHHH-HhcCChHHHHH----HHHHHHHC-CCCc-CHHHHHHHHHHHHc---------CCChHHHHHHHHHHHHCCC
Q 008454 196 FDLLFKTY-AHRKKFRNATD----TFCQMRDY-GFLP-IIESCNKFLSSLLD---------SERVDIALGFYKEMRRNRI 259 (565)
Q Consensus 196 ~~~li~~~-~~~g~~~~A~~----~~~~~~~~-~~~p-~~~~~~~ll~~~~~---------~~~~~~A~~~~~~m~~~~~ 259 (565)
|..++... ...|+++.|.+ +|++.... |..| +...|...+....+ .|+++.|..+|++..+...
T Consensus 82 w~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~ 161 (530)
T 2ooe_A 82 WKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM 161 (530)
T ss_dssp HHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchh
Confidence 76666533 34577777665 66666543 4433 56777777776654 6788889999988876311
Q ss_pred CCCHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHH------hCC---CCCC--------HHHHHHHHHHHH
Q 008454 260 SPNVYTLNMVMHAF-------------CKLGIIERAVEVFKNME------SMG---FIPS--------VTTYNTLISGHC 309 (565)
Q Consensus 260 ~p~~~~~~~li~~~-------------~~~g~~~~a~~~~~~m~------~~g---~~p~--------~~~~~~li~~~~ 309 (565)
......|....... .+.++++.|..++..+. +.. +.|+ ...|...+....
T Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 11123444333211 02345667777766532 211 2333 245555554332
Q ss_pred hc----CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHhCCCCCC
Q 008454 310 NK----GLL----SLAMKFKNLMEKNGIQPNVITFNTLIFGFCK-------KGKLH-------EANRIFSEMKATNVSPN 367 (565)
Q Consensus 310 ~~----g~~----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~~~ 367 (565)
.. ++. +.+..++++..... +-+...|..++..+.+ .|+++ +|..++++..+.-.+-+
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~ 320 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 320 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc
Confidence 22 222 36677888877652 3367788888877775 68876 88888888876323446
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008454 368 VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVD-ILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALIT 446 (565)
Q Consensus 368 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 446 (565)
...|..++..+.+.|++++|..+|+++.+.... + ...|..++..+.+.|++++|..+|+...+.... +...|...+.
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~ 398 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHH
Confidence 778888888888889999999999998885322 3 357888888888888999999999988875322 2333333222
Q ss_pred H-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC--HHHHHHHHHHHHhcC
Q 008454 447 G-QCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCM-APD--SIILSELYSGLHHCG 522 (565)
Q Consensus 447 ~-~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~--~~~~~~li~~~~~~g 522 (565)
. +...|+.++|..+|+..++.. +-+...|..++..+.+.|+.++|..+|++++..+. .|+ ...|...+......|
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2 335888999999999888763 44678888888888888999999999999887632 232 447878888888889
Q ss_pred CHHHHHHHHHHHHHC
Q 008454 523 KDELAMKLFRKMEIR 537 (565)
Q Consensus 523 ~~~~A~~~~~~m~~~ 537 (565)
+.+.+..+++++.+.
T Consensus 478 ~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 478 DLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999888765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-18 Score=167.31 Aligned_cols=289 Identities=10% Similarity=0.001 Sum_probs=201.9
Q ss_pred hcCChHHHHH-HHHHHHHCCCC-c--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008454 205 HRKKFRNATD-TFCQMRDYGFL-P--IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIE 280 (565)
Q Consensus 205 ~~g~~~~A~~-~~~~~~~~~~~-p--~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 280 (565)
-.|++++|++ .|++....... | +...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3456666666 66654433211 1 23455666666777777777777777776653 235566666677777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHH
Q 008454 281 RAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNT---------------LIFGFCK 345 (565)
Q Consensus 281 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---------------li~~~~~ 345 (565)
+|.+.++++.+... .+..++..+...+...|++++|...++++...... +...+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 77777777665532 25666666777777777777777777776665322 1111111 2333448
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 346 KGKLHEANRIFSEMKATNVSP-NVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAY 424 (565)
Q Consensus 346 ~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 424 (565)
.|++++|...++++.+..... +..++..+...+...|++++|...++++.+... .+..++..+...+...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 899999999999988764211 578888899999999999999999999887643 367889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHH
Q 008454 425 LVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPN-----------KHIFEMLMSTFCQNEDFDRAA 493 (565)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-----------~~~~~~li~~~~~~g~~~~A~ 493 (565)
.++++.+... .+...+..+...|.+.|++++|...|+++++.. +.+ ..+|..+..++...|++++|.
T Consensus 273 ~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 273 AYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999887643 367889999999999999999999999988752 122 688999999999999999999
Q ss_pred HHHHHH
Q 008454 494 EVLLEM 499 (565)
Q Consensus 494 ~~~~~~ 499 (565)
.++++.
T Consensus 351 ~~~~~~ 356 (368)
T 1fch_A 351 AADARD 356 (368)
T ss_dssp HHHTTC
T ss_pred HhHHHH
Confidence 887643
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-15 Score=154.17 Aligned_cols=406 Identities=13% Similarity=0.077 Sum_probs=299.2
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcC
Q 008454 128 TWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRK 207 (565)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 207 (565)
+.+.+..| .+...|..++.. ...|++++|..+++++++. .|.+...|..++..+.+.|
T Consensus 3 e~al~~~P--~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-------------------~P~~~~~w~~~~~~~~~~~ 60 (530)
T 2ooe_A 3 EKKLEENP--YDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-------------------FPSSGRFWKLYIEAEIKAK 60 (530)
T ss_dssp HHHHHHCT--TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-------------------CTTCHHHHHHHHHHHHHTT
T ss_pred hhHhhhCC--CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-------------------CCCCHHHHHHHHHHHHhcC
Confidence 34444443 578889888884 7789999999999999987 6678889999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH-HcCCChHHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHH-----
Q 008454 208 KFRNATDTFCQMRDYGFLPIIESCNKFLSSL-LDSERVDIALG----FYKEMRR-NRISP-NVYTLNMVMHAFCK----- 275 (565)
Q Consensus 208 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~-~~~~~~~~A~~----~~~~m~~-~~~~p-~~~~~~~li~~~~~----- 275 (565)
++++|..+|+++.... |++..|...+... ...|+.+.|.+ +|+.... .|..| +...|...+....+
T Consensus 61 ~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~ 138 (530)
T 2ooe_A 61 NYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVG 138 (530)
T ss_dssp CHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCS
T ss_pred CHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcc
Confidence 9999999999999987 5888888877544 35677776655 7777654 35443 56778777776654
Q ss_pred ----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-------------HhcCChhHHHHHHHHHH------HCC---C
Q 008454 276 ----LGIIERAVEVFKNMESMGFIPSVTTYNTLISGH-------------CNKGLLSLAMKFKNLME------KNG---I 329 (565)
Q Consensus 276 ----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-------------~~~g~~~~a~~~~~~m~------~~g---~ 329 (565)
.|+++.|..+|++..+.........|....... .+.++++.|..++..+. +.. +
T Consensus 139 ~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 139 SYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp STTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred cHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 789999999999998842221134444332211 13467888888777632 211 2
Q ss_pred CCC--------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCChH-
Q 008454 330 QPN--------VITFNTLIFGFCKK----GKL----HEANRIFSEMKATNVSPNVVTYNTLINGYGQ-------VGNSE- 385 (565)
Q Consensus 330 ~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~~- 385 (565)
+|+ ...|...+...... ++. +.|..+|++..... +.+...|..++..+.+ .|+++
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~ 297 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNN 297 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhh
Confidence 343 35666666543332 232 47888999888763 4567888888888775 69987
Q ss_pred ------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 008454 386 ------MGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNA-STYSALITGQCVRKNSERAF 458 (565)
Q Consensus 386 ------~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~A~ 458 (565)
+|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+.+.+.... +. ..|..++..+.+.|++++|.
T Consensus 298 a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 298 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHH
Confidence 89999999987323346889999999999999999999999999985322 33 58999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 459 QLYKSMIRSGCRPNKHIFEMLMST-FCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 459 ~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
++|++.++.. +.+...|...+.. +...|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|++....
T Consensus 377 ~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 377 MIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 9999999863 2333444333222 346899999999999998863 346789999999999999999999999999987
Q ss_pred C-CCCC--HhhHHHHHhhcccCCCccC
Q 008454 538 G-LLPK--GFDKLRTINCAPENGEKES 561 (565)
Q Consensus 538 g-~~p~--~~~~~~ll~~~~~~g~~~~ 561 (565)
+ ..|+ ...|...+......|+.+.
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4 3343 3466666776666776553
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-17 Score=161.11 Aligned_cols=265 Identities=12% Similarity=-0.040 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 263 VYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFG 342 (565)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 342 (565)
...+..+...+.+.|++++|++.|+++.+... .+..+|..+...+...|++++|...++++.+.. +.+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34466666677777777777777777766532 256677777777777777777777777776653 2356677777777
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 008454 343 FCKKGKLHEANRIFSEMKATNVSPN-----------VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIK-VDILTYNALI 410 (565)
Q Consensus 343 ~~~~g~~~~A~~~~~~m~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li 410 (565)
|...|++++|++.++++.+.. |+ ...+..+...+...|++++|..+++++.+.... .+..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 777777777777777776542 11 223344577888889999999999998876432 2678888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 008454 411 LGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFD 490 (565)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 490 (565)
..|...|++++|...++++.+.... +..+|..+...|...|++++|+..|+++++.. +.+..++..+..++.+.|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999998876443 67889999999999999999999999998874 455888999999999999999
Q ss_pred HHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 491 RAAEVLLEMLEKCMA-----------PDSIILSELYSGLHHCGKDELAMKLFRK 533 (565)
Q Consensus 491 ~A~~~~~~~~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 533 (565)
+|...++++++.... .+..+|..+..++...|+.+.+.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999998764211 1256789999999999999988877654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-16 Score=151.23 Aligned_cols=261 Identities=10% Similarity=0.017 Sum_probs=177.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 268 MVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKG 347 (565)
Q Consensus 268 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 347 (565)
.+...+...|++++|..+++++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcC
Confidence 3344444555555555555554443221 44444455555555555555555555554432 224445555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 348 KLHEANRIFSEMKATNVSPNVVTYNTL--------------IN-GYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILG 412 (565)
Q Consensus 348 ~~~~A~~~~~~m~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 412 (565)
++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+.... +...+..+...
T Consensus 104 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 181 (327)
T 3cv0_A 104 NANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVL 181 (327)
T ss_dssp CHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 5555555555555432 1111122111 22 366778889999999988876433 67888889999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 413 LCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRA 492 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 492 (565)
+...|++++|...++++.+.... +...+..+...+...|++++|...++++++.. +.+..++..+...+...|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999988876433 67788999999999999999999999998864 55678899999999999999999
Q ss_pred HHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 493 AEVLLEMLEKCMAP-----------DSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 493 ~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
...++++.+..... +..+|..+..++.+.|+.++|..++++.
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999998753221 4678899999999999999999988754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.4e-17 Score=158.12 Aligned_cols=234 Identities=11% Similarity=-0.076 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 193 PLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHA 272 (565)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 272 (565)
...+..+...+.+.|++++|++.|+++.+.... +..+|..+...+...|++++|+..|+++.+.. +.+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345778888888999999999999998876643 67888888888888888888888888887753 3357788888888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 008454 273 FCKLGIIERAVEVFKNMESMGFI---------PSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQ-PNVITFNTLIFG 342 (565)
Q Consensus 273 ~~~~g~~~~a~~~~~~m~~~g~~---------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~ 342 (565)
|...|++++|++.++++.+.... .....+..+...+...|++++|..+++++.+.... .+..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 88888888888888887764210 00112223344555555555555555555544211 134455555555
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008454 343 FCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKA 422 (565)
Q Consensus 343 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 422 (565)
|.+.|++++|++.++++.+.. +.+..+|..+..+|...|++++|...|+++.+.... +..++..+..+|.+.|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHH
Confidence 555555555555555554432 233444555555555555555555555554443211 344444444445555555555
Q ss_pred HHHHHHHH
Q 008454 423 AYLVKDLD 430 (565)
Q Consensus 423 ~~~~~~~~ 430 (565)
...|+++.
T Consensus 301 ~~~~~~al 308 (365)
T 4eqf_A 301 VSNFLTAL 308 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-16 Score=153.24 Aligned_cols=279 Identities=8% Similarity=-0.061 Sum_probs=169.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 193 PLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHA 272 (565)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 272 (565)
...+..+...+...|++++|+.+|+++.+.... +...+..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 345667888899999999999999999886643 77888888999999999999999999987753 3467788888888
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHHcCCHH
Q 008454 273 FCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIF--GFCKKGKLH 350 (565)
Q Consensus 273 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g~~~ 350 (565)
+...|++++|.+.++++.+.... +...+..+... .++......+.. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 88899999999999888876322 11122211000 000111111111 244445555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 351 EANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLD 430 (565)
Q Consensus 351 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 430 (565)
+|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|...++++.
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555442 23445555555555555555555555555554422 245555666666666666666666666655
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 431 KNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRP-----------NKHIFEMLMSTFCQNEDFDRAAEVLLEM 499 (565)
Q Consensus 431 ~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~ 499 (565)
+.... +...+..+...+...|++++|.+.++++++..... +..++..+..++.+.|++++|..++++.
T Consensus 234 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 234 DINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 54322 45556666666666666666666666665542110 2456666666666667766666666543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-14 Score=154.76 Aligned_cols=372 Identities=13% Similarity=0.124 Sum_probs=258.8
Q ss_pred CCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCC-CCCcHHHHHHHHHhc-ccCCC---------ChHHHHHHHHHHHhc
Q 008454 138 LTLETHSIVLHILTKNRKFKSSESILRGILDSDS-FDLPSKLFDSILYSY-RMCDS---------SPLVFDLLFKTYAHR 206 (565)
Q Consensus 138 ~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~li~~~~~~ 206 (565)
.+++--...+..+...|.+.+|.+++++..-.+. +.....+=..++.+. +.... +.....-+...+...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~l 1062 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISN 1062 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhC
Confidence 3455555666666677777777777777664322 112222222222221 11111 112233467788889
Q ss_pred CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008454 207 KKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVF 286 (565)
Q Consensus 207 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 286 (565)
|.+++|..+|++... .....+.++. ..+++++|.+++++.. +..+|..+..++...|++++|++.|
T Consensus 1063 glyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred CCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999998632 2333343333 6678999988888652 5678889999999999999999998
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008454 287 KNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSP 366 (565)
Q Consensus 287 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 366 (565)
.+. -|...|..++..+.+.|++++|.+++....+.. ++....+.++.+|++.+++++....+ . .+
T Consensus 1129 iKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1129 IKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred Hhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 664 278888889999999999999999998877654 33333445888899998888544332 2 34
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008454 367 NVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALIT 446 (565)
Q Consensus 367 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 446 (565)
+...|..+...|...|++++|..+|... ..|..++.+|++.|++++|.+.+++.. +..+|..+..
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~ 1258 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCF 1258 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHH
Confidence 6667778889999999999999999885 478889999999999999999998763 5678888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCH
Q 008454 447 GQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHC--GKD 524 (565)
Q Consensus 447 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~ 524 (565)
+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+... +-....|+.|...|.+- ++.
T Consensus 1259 acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred HHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHH
Confidence 888899888888876543 3456777888999999999999999998887653 33445676666666653 344
Q ss_pred HHHHHHHHHHHHC-CCCC------CHhhHHHHHhhcccCCCccCC
Q 008454 525 ELAMKLFRKMEIR-GLLP------KGFDKLRTINCAPENGEKESG 562 (565)
Q Consensus 525 ~~A~~~~~~m~~~-g~~p------~~~~~~~ll~~~~~~g~~~~~ 562 (565)
.++.++|. ++ ++.+ +...|..++..|.+.|+++.|
T Consensus 1333 mEhlk~f~---~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1333 REHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred HHHHHHHH---HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 44444444 33 2222 455677777778777777654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-15 Score=144.45 Aligned_cols=254 Identities=9% Similarity=0.017 Sum_probs=173.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGII 279 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 279 (565)
++-....|+++.|+..++................+.++|...|+++.|+..++. .-+|+..++..+...+...|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 344556788888888887765543222234556667888888888888876644 1345667777777788888888
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008454 280 ERAVEVFKNMESMGFIP-SVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSE 358 (565)
Q Consensus 280 ~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 358 (565)
++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888887765444 455566666778888888888888776 34677777788888888888888888888
Q ss_pred HHhCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 359 MKATNVSPNVVTY---NTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLV 435 (565)
Q Consensus 359 m~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (565)
+.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++.+....
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 87763 443211 112233334477777777777777663 346777777777777777777777777777665433
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 008454 436 PNASTYSALITGQCVRKNSER-AFQLYKSMIRS 467 (565)
Q Consensus 436 p~~~~~~~li~~~~~~~~~~~-A~~~~~~m~~~ 467 (565)
+..++..++..+...|+.++ +.++++++++.
T Consensus 233 -~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 233 -HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp -CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 66677777777777777654 45677777765
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-15 Score=144.78 Aligned_cols=273 Identities=7% Similarity=0.000 Sum_probs=188.1
Q ss_pred HHHHcCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008454 236 SSLLDSERVDIALGFYKEMRRNRISPN--VYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGL 313 (565)
Q Consensus 236 ~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 313 (565)
+-....|+++.|+..++..... .|+ ......+.++|...|+++.|+..++. .-.|+..++..+...+...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 4455678888888887765433 233 23555667888888888888876644 134567777778888888888
Q ss_pred hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 314 LSLAMKFKNLMEKNGIQP-NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYE 392 (565)
Q Consensus 314 ~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 392 (565)
.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888887766434 455566666888888888888888876 3567778888888888888888888888
Q ss_pred HHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008454 393 EMLRNGIKVDILTY---NALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGC 469 (565)
Q Consensus 393 ~m~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 469 (565)
++.+.. |+.... ..++..+...|++++|..+|+++.+... .+...|+.+..++.+.|++++|...++++++..
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 887764 332211 2233334445788888888888877633 377778888888888888888888888888764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008454 470 RPNKHIFEMLMSTFCQNEDFDR-AAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMK 529 (565)
Q Consensus 470 ~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 529 (565)
+-+..++..++..+...|+.++ +.++++++.+. .|+... +.+...+.+.++++..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHH
Confidence 4567778778878888887765 56777877765 333322 2233444455555443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=175.00 Aligned_cols=118 Identities=10% Similarity=0.067 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008454 403 ILTYNALILGLCKEGKTKKAAYLVKDLDK---NSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEML 479 (565)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 479 (565)
..+|++||++||+.|++++|..+|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34555555555555555555555544432 244555555555555555555555555555555555555555555555
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008454 480 MSTFCQNED-FDRAAEVLLEMLEKCMAPDSIILSELYSGLHH 520 (565)
Q Consensus 480 i~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 520 (565)
|.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.+..+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 555555554 34455555555555555555555555444333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.8e-18 Score=176.36 Aligned_cols=120 Identities=13% Similarity=0.158 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008454 227 IIESCNKFLSSLLDSERVDIALGFYKEMRR---NRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNT 303 (565)
Q Consensus 227 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 303 (565)
...+||++|.+|++.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345777788888888888888777777653 46777778888888888888888888888888877777778888888
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 304 LISGHCNKGLL-SLAMKFKNLMEKNGIQPNVITFNTLIFGFCKK 346 (565)
Q Consensus 304 li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 346 (565)
+|.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.+..+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 88777777764 66777777887777777777777777655443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=155.47 Aligned_cols=282 Identities=13% Similarity=0.089 Sum_probs=114.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 205 HRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVE 284 (565)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 284 (565)
+.|++++|.+.++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4467788888887773 2347778888888888888888887542 466677777888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 285 VFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNV 364 (565)
Q Consensus 285 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 364 (565)
.++...+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 66655553 3456667778888888888887777664 256668888888888888888888888766
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008454 365 SPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSAL 444 (565)
Q Consensus 365 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 444 (565)
..|..++.++++.|++++|.+.+.++ .++.+|..++.+|+..|+++.|...... +..++.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 35777888888888888888888877 2677888888888888888888544443 22344445567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC------CHHHHHHHHHH
Q 008454 445 ITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK-CMAP------DSIILSELYSG 517 (565)
Q Consensus 445 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p------~~~~~~~li~~ 517 (565)
+..|.+.|++++|+.+++..+... +-....|+.|..++++- ++++.++.++....+ +++| +...|..+.-.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888877654 55567777776666654 333333333322211 2222 23457777777
Q ss_pred HHhcCCHHHHHH
Q 008454 518 LHHCGKDELAMK 529 (565)
Q Consensus 518 ~~~~g~~~~A~~ 529 (565)
|.+.++++.|..
T Consensus 292 y~~~~e~d~A~~ 303 (449)
T 1b89_A 292 YDKYEEYDNAII 303 (449)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHhhchHHHHHH
Confidence 777788877765
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-16 Score=151.88 Aligned_cols=287 Identities=13% Similarity=0.088 Sum_probs=125.7
Q ss_pred HHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCC
Q 008454 111 HVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCD 190 (565)
Q Consensus 111 ~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (565)
.+++..-++.+.|.+|++... .+.+|..++.++.+.|++++|.+.|.+.
T Consensus 10 ~~ll~~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika------------------------ 58 (449)
T 1b89_A 10 QVLIEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------------------------ 58 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------------------------
Confidence 344445566788888888662 2358889999999999999998888542
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVM 270 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 270 (565)
+++..|..++.++...|++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.
T Consensus 59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IG 129 (449)
T 1b89_A 59 DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVG 129 (449)
T ss_dssp ----------------------------------------------------CHHHHTTTTT-------CC---------
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHH
Confidence 24557888888888899999999977776663 3457778889999999999998888774 36777999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008454 271 HAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLH 350 (565)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 350 (565)
..|...|++++|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++
T Consensus 130 d~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~ 194 (449)
T 1b89_A 130 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 194 (449)
T ss_dssp -------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHH
Confidence 9999999999999999876 36888999999999999999998887 27889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 008454 351 EANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKE--GKTKKAAYLVKD 428 (565)
Q Consensus 351 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~ 428 (565)
.|...... +...+.....++..|.+.|.+++|..+++...... .-....|+.|.-.|++- +++.+.+++|..
T Consensus 195 lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~ 268 (449)
T 1b89_A 195 LAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS 268 (449)
T ss_dssp HHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99555443 22334445568888999999999999999888665 44667777777777654 344455554442
Q ss_pred HHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHH
Q 008454 429 LDKNSLVP------NASTYSALITGQCVRKNSERAFQL 460 (565)
Q Consensus 429 ~~~~~~~p------~~~~~~~li~~~~~~~~~~~A~~~ 460 (565)
- .++.| +...|..+.-.|.+.++++.|...
T Consensus 269 ~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 269 R--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp T--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred H--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 1 11111 334578888888888888887763
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-14 Score=144.75 Aligned_cols=383 Identities=10% Similarity=-0.055 Sum_probs=252.0
Q ss_pred CCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 008454 137 SLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTF 216 (565)
Q Consensus 137 ~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 216 (565)
......|+.+..++...|++++|++.+++.++.- ... ..-...+....+|+.+..+|...|++++|+..+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~---------~~~-~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~ 117 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELI---------QQE-HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------HHH-SGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------Hhc-CccccchHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3446688999999999999999999999876530 000 000112335578999999999999999999999
Q ss_pred HHHHHC-----CC--CcCHHHHHHHHHHHHc--CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHcCCHHHHHH
Q 008454 217 CQMRDY-----GF--LPIIESCNKFLSSLLD--SERVDIALGFYKEMRRNRISPNVYTLNMVMHA---FCKLGIIERAVE 284 (565)
Q Consensus 217 ~~~~~~-----~~--~p~~~~~~~ll~~~~~--~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~---~~~~g~~~~a~~ 284 (565)
++..+. +. .....++..+..++.. .+++++|+..|++..+... -+...+..+..+ +...++.++|++
T Consensus 118 ~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~ 196 (472)
T 4g1t_A 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAID 196 (472)
T ss_dssp HHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHH
T ss_pred HHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 987642 11 1145667666656554 4579999999999987642 245555544444 445678889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 285 VFKNMESMGFIPSVTTYNTLISGHCN----KGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMK 360 (565)
Q Consensus 285 ~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 360 (565)
.+++..+.... +...+..+...+.. .|++++|.+++++..... +.+..++..+...|.+.|++++|.+.+++..
T Consensus 197 ~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 274 (472)
T 4g1t_A 197 PLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKAL 274 (472)
T ss_dssp HHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 99988876432 56666666555544 467889999999988764 3477889999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhc-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008454 361 ATNVSPNVVTYNTLINGYGQV-------------------GNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKK 421 (565)
Q Consensus 361 ~~~~~~~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 421 (565)
+.. +-+..++..+..+|... +..+.|...+++..+.... +...+..+...|...|++++
T Consensus 275 ~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 275 EYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHH
T ss_pred HhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHH
Confidence 864 44556666666555332 2356777788877765432 45667889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 422 AAYLVKDLDKNSLVPNAS--TYSALIT-GQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLE 498 (565)
Q Consensus 422 A~~~~~~~~~~~~~p~~~--~~~~li~-~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (565)
|...|++..+....+... .+..+.. .....|+.++|+..|.+.++. .|+...... ....+.+++++
T Consensus 353 A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~ 421 (472)
T 4g1t_A 353 AEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKM 421 (472)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHH
Confidence 999999998765443221 2222222 234678999999999999886 455332222 23445556666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhH
Q 008454 499 MLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRG-LLPKGFDK 546 (565)
Q Consensus 499 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~ 546 (565)
.++.+ +.+..+|..+...|...|++++|.+.|++..+.| ..|+...+
T Consensus 422 ~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 422 RLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHC-C-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 66653 4467889999999999999999999999998764 33554443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.4e-13 Score=144.14 Aligned_cols=297 Identities=11% Similarity=0.087 Sum_probs=201.0
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CcCHHHHHHHHH---------------------------HHHcCC
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGF--LPIIESCNKFLS---------------------------SLLDSE 242 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~---------------------------~~~~~~ 242 (565)
+|.--...+++|...|.+.+|+++++++.-.+- .-+....+.++. .+...|
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNE 1063 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCC
Confidence 333444566667777777777777777663221 012344444443 444556
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 008454 243 RVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKN 322 (565)
Q Consensus 243 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 322 (565)
.+++|..+|++.. -.....+.++. ..|++++|.++.++.. +..+|..+..++...|++++|.+.|.
T Consensus 1064 lyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred CHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 6666666666542 12222222222 5566666666666442 46777788888888888888888875
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 008454 323 LMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVD 402 (565)
Q Consensus 323 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 402 (565)
+. -|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+. + .++
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 53 366777778888888888888888887766653 33333345777788887777533332 2 235
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008454 403 ILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMST 482 (565)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 482 (565)
...|..+...|...|++++|..+|..+ ..|..+...+++.|++++|.+.+++. .+..+|..+..+
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHH
Confidence 566777888888888888888888864 36888888888888888888888876 345788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 483 FCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
|...|++..|...... +..+...+..++..|.+.|.+++|..+++.....
T Consensus 1260 cve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8888888888776543 3346777889999999999999999999877543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.5e-14 Score=142.87 Aligned_cols=368 Identities=10% Similarity=-0.057 Sum_probs=250.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhhc-------CCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHH
Q 008454 108 RVKHVLLKVQKDYVLSLEFFTWVQTH-------KPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFD 180 (565)
Q Consensus 108 ~~~~~l~~~~~~~~~al~~f~~~~~~-------~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~ 180 (565)
...+.+....|+++.|++.|+.+... ...+....+|..+..++...|++++|...++++.+...
T Consensus 55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~--------- 125 (472)
T 4g1t_A 55 NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE--------- 125 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH---------
Confidence 34566778889999999999987652 11234577899999999999999999999988765410
Q ss_pred HHHHhcccCCCChHHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCcCHHHHHHHHHH---HHcCCChHHHHHHHHHHH
Q 008454 181 SILYSYRMCDSSPLVFDLLFKTYAHR--KKFRNATDTFCQMRDYGFLPIIESCNKFLSS---LLDSERVDIALGFYKEMR 255 (565)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~---~~~~~~~~~A~~~~~~m~ 255 (565)
.+. -......+.++..+..++.+. +++++|++.|++..+.... +...+..+... +...++.++|++.+++..
T Consensus 126 ~~~--~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al 202 (472)
T 4g1t_A 126 KFS--SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI 202 (472)
T ss_dssp HSC--CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH
T ss_pred hcc--cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 000 000122456676666666554 5799999999999887643 56666665555 345678889999999887
Q ss_pred HCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 008454 256 RNRISPNVYTLNMVMHAFCK----LGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQP 331 (565)
Q Consensus 256 ~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~ 331 (565)
+.. +.+...+..+...+.. .|++++|.+.+++...... .+...+..+...|...|++++|...+++..+... -
T Consensus 203 ~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~ 279 (472)
T 4g1t_A 203 RLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-N 279 (472)
T ss_dssp HHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-T
T ss_pred hcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-C
Confidence 754 2356666666555544 4678899999999887643 3678889999999999999999999999988642 3
Q ss_pred CHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 332 NVITFNTLIFGFCKK-------------------GKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYE 392 (565)
Q Consensus 332 ~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 392 (565)
+..++..+..+|... +.++.|...++...+.. +.+...+..+...+...|++++|...|+
T Consensus 280 ~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 358 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQ 358 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHH
Confidence 566676666655432 23567888888877654 4456778889999999999999999999
Q ss_pred HHHHCCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008454 393 EMLRNGIKVDIL--TYNALIL-GLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGC 469 (565)
Q Consensus 393 ~m~~~~~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 469 (565)
+..+....+... .+..+.. .+...|+.++|+..|.+..+.. |+..... +..+.+.++++..++..
T Consensus 359 kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~~~~~~l~~~- 426 (472)
T 4g1t_A 359 KEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQKIAKMRLSKN- 426 (472)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHHHHHHHHHHHC-
T ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHHHHHHHHHHhC-
Confidence 999875443221 2333332 2346799999999999998754 4432222 22344556666666654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008454 470 RPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKC 503 (565)
Q Consensus 470 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 503 (565)
+.+..+|..+..++...|++++|.+.|++.++.+
T Consensus 427 p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 427 GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5677899999999999999999999999998864
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-14 Score=131.45 Aligned_cols=222 Identities=11% Similarity=0.034 Sum_probs=108.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCC----HHHHHHH
Q 008454 301 YNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATN--VSPN----VVTYNTL 374 (565)
Q Consensus 301 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~----~~~~~~l 374 (565)
+..+...+...|++++|..++++..+.. .+...+..+..++...|++++|++.++++.+.. ..++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444433 334444444444444444444444444443321 0001 2344444
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008454 375 INGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNS 454 (565)
Q Consensus 375 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 454 (565)
...+...|++++|...++++.+.. |+. ..+.+.|++++|...++.+...... +...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCH
Confidence 444444555555555554444421 221 2233444555555555555543211 333455555555556666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 455 ERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 455 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
++|...++++++.. +.+..++..+...+...|++++|...++++++.. +.+...|..+...+.+.|++++|.+.+++.
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666666655543 3345555556666666666666666666665542 223555555666666666666666666655
Q ss_pred HH
Q 008454 535 EI 536 (565)
Q Consensus 535 ~~ 536 (565)
.+
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.5e-14 Score=130.51 Aligned_cols=224 Identities=13% Similarity=0.055 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CC----HHHHHH
Q 008454 265 TLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQ--PN----VITFNT 338 (565)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~----~~~~~~ 338 (565)
.+..+...+...|++++|...|++..+.. .+...+..+...+...|++++|...+++..+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444455555555555555555555444 34555555555555555555555555555442110 11 355556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 339 LIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGK 418 (565)
Q Consensus 339 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 418 (565)
+...+...|++++|.+.++++.+.. ++. ..+...|++++|...++++..... .+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcC
Confidence 6666666666666666666665542 331 234455666777777776666432 245566667777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 419 TKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLE 498 (565)
Q Consensus 419 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (565)
+++|...++++.+.... +...|..+...+...|++++|+..++++++.. +.+...+..+..++.+.|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77777777777665433 56677777777777777777777777777764 44567777777777778888888887777
Q ss_pred HHHc
Q 008454 499 MLEK 502 (565)
Q Consensus 499 ~~~~ 502 (565)
+.+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.1e-14 Score=126.41 Aligned_cols=197 Identities=15% Similarity=0.033 Sum_probs=114.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 332 NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALIL 411 (565)
Q Consensus 332 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 411 (565)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...+++..+.... +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 44455555555555666666666665555543 334455555555555566666666666655554322 4455555555
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008454 412 GLCKE-----------GKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLM 480 (565)
Q Consensus 412 ~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 480 (565)
.+... |++++|...+++..+.... +...|..+...+...|++++|+..|+++++.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 7777777777777665433 55666777777777777777777777777765 5666777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 481 STFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
.++...|++++|...++++++.. +.+...+..+...+...|++++|...|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777777777776653 235566667777777777777777777654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.4e-14 Score=126.28 Aligned_cols=199 Identities=14% Similarity=-0.046 Sum_probs=134.2
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVM 270 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 270 (565)
+++..+..+...+.+.|++++|+..|++..+.... +...+..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45667778888888889999999999888886644 77888888888888888888888888887754 23567777788
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 008454 271 HAFCKL-----------GIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTL 339 (565)
Q Consensus 271 ~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 339 (565)
..+... |++++|+..+++..+.... +...+..+..++...|++++|+..+++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 888777 7777777777777665322 45666667777777777777777777776665 466667777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008454 340 IFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEML 395 (565)
Q Consensus 340 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 395 (565)
..+|...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 777777777777777777766653 3455666666667777777777776666554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-12 Score=121.07 Aligned_cols=224 Identities=12% Similarity=-0.017 Sum_probs=148.4
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCHHHH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLD----SERVDIALGFYKEMRRNRISPNVYTL 266 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~ 266 (565)
.++.++..+...|...|++++|++.|++..+.+ +..++..+...+.. .+++++|+..|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 356667777777888888888888888877732 55677777777777 777777777777777664 56667
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 267 NMVMHAFCK----LGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCN----KGLLSLAMKFKNLMEKNGIQPNVITFNT 338 (565)
Q Consensus 267 ~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 338 (565)
..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 777777777 777777777777776654 56666666666766 677777777777766654 4555566
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 339 LIFGFCK----KGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQ----VGNSEMGASLYEEMLRNGIKVDILTYNALI 410 (565)
Q Consensus 339 li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 410 (565)
+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 6666666 666677777666666543 34555556666666 666666666666666553 244555555
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhC
Q 008454 411 LGLCK----EGKTKKAAYLVKDLDKN 432 (565)
Q Consensus 411 ~~~~~----~g~~~~A~~~~~~~~~~ 432 (565)
..|.+ .+++++|...|++..+.
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 55555 56666666666655544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.5e-14 Score=140.36 Aligned_cols=346 Identities=9% Similarity=-0.021 Sum_probs=167.3
Q ss_pred HHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCCh---HHHHHHHHHHHHC
Q 008454 146 VLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKF---RNATDTFCQMRDY 222 (565)
Q Consensus 146 l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~ 222 (565)
+...+.+.|++++|..++++..+.| ++.++..|...|...|+. ++|++.|++..+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---------------------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~ 67 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---------------------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---------------------CCTGGGTCC-------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC
Confidence 4555666777778888777776664 223333444555555655 6777777666643
Q ss_pred CCCcCHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhCCC
Q 008454 223 GFLPIIESCNKFLSSLLDSE-----RVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIE---RAVEVFKNMESMGF 294 (565)
Q Consensus 223 ~~~p~~~~~~~ll~~~~~~~-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~ 294 (565)
+...+..+...+...+ ++++|+..|++..+.|.. ..+..|...|...+..+ ++.+.+....+.|
T Consensus 68 ----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g- 139 (452)
T 3e4b_A 68 ----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG- 139 (452)
T ss_dssp -------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT-
T ss_pred ----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC-
Confidence 4445555555444443 556677777776665422 24444555555444322 2333333333333
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHH
Q 008454 295 IPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKG---KLHEANRIFSEMKATNVSPNVVTY 371 (565)
Q Consensus 295 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~ 371 (565)
+...+..|...|...+.++++......+.+.-...+...+..+...|.+.| +.++|++.|++..+.| .++...+
T Consensus 140 --~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~ 216 (452)
T 3e4b_A 140 --YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRV 216 (452)
T ss_dssp --CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHH
T ss_pred --CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHH
Confidence 233444455555555544443333222221111112225556666666666 6666666666666655 3444443
Q ss_pred HHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008454 372 NTLINGYGQV----GNSEMGASLYEEMLRNGIKVDILTYNALILG-L--CKEGKTKKAAYLVKDLDKNSLVPNASTYSAL 444 (565)
Q Consensus 372 ~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 444 (565)
..+...|... +++++|...|++.. . -+...+..+... + ...++.++|...|++..+.| +...+..|
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~L 289 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLL 289 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 4455555433 46666666666665 2 234444555554 2 34566666666666666554 44455555
Q ss_pred HHHHHhcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008454 445 ITGQCVRK-----NSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ----NEDFDRAAEVLLEMLEKCMAPDSIILSELY 515 (565)
Q Consensus 445 i~~~~~~~-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 515 (565)
...|. .| ++++|++.|++.. . -+...+..|...|.. ..++++|...|++..+.|. ......|.
T Consensus 290 g~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg 361 (452)
T 3e4b_A 290 GKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIA 361 (452)
T ss_dssp HHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHH
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHH
Confidence 55554 33 6666666666665 2 244455555555544 2366666666666665542 22333444
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCC
Q 008454 516 SGLHH----CGKDELAMKLFRKMEIRG 538 (565)
Q Consensus 516 ~~~~~----~g~~~~A~~~~~~m~~~g 538 (565)
..|.. ..+.++|..+|+...+.|
T Consensus 362 ~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 362 QLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 44442 345666666666665555
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-13 Score=139.48 Aligned_cols=381 Identities=11% Similarity=-0.011 Sum_probs=252.0
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCc---hhHHHHHHHHhhcCCCCCcHHHHHHHHH
Q 008454 108 RVKHVLLKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKF---KSSESILRGILDSDSFDLPSKLFDSILY 184 (565)
Q Consensus 108 ~~~~~l~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~a~~ll~~~~~~~~~~~~~~~~~~~~~ 184 (565)
.-.......+++++.|++.|+.+.... +.+++..+..++...|+. ++|..++++..+.
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--------------- 67 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--------------- 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC----------------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---------------
Confidence 344555666789999999999987653 234555666666667777 8999998887754
Q ss_pred hcccCCCChHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChH---HHHHHHHHHHH
Q 008454 185 SYRMCDSSPLVFDLLFKTYAHRK-----KFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVD---IALGFYKEMRR 256 (565)
Q Consensus 185 ~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~---~A~~~~~~m~~ 256 (565)
++..+..|...+...+ ++++|+..|++..+.|.. .++..+...|...+..+ ++.+.+.....
T Consensus 68 -------~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~ 137 (452)
T 3e4b_A 68 -------SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQA 137 (452)
T ss_dssp ----------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 3455666777555555 789999999999997743 36777788887766544 35555555554
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCH
Q 008454 257 NRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKG---LLSLAMKFKNLMEKNGIQPNV 333 (565)
Q Consensus 257 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~~ 333 (565)
.| +...+..+...|...+.++++......+.+.-...+...+..|...|...| +.++|++.+++..+.|. ++.
T Consensus 138 ~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a 213 (452)
T 3e4b_A 138 AG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTA 213 (452)
T ss_dssp HT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCH
T ss_pred CC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHH
Confidence 44 445666777778888855554444333322211123337888888999999 99999999999999874 466
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 008454 334 ITFNTLIFGFCKK----GKLHEANRIFSEMKATNVSPNVVTYNTLING-Y--GQVGNSEMGASLYEEMLRNGIKVDILTY 406 (565)
Q Consensus 334 ~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 406 (565)
..+..+...|... +++++|+++|++.. .| +...+..+... + ...+++++|...|++..+.| +...+
T Consensus 214 ~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~ 286 (452)
T 3e4b_A 214 QRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAE 286 (452)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 6666777777654 79999999999987 43 55666777766 4 56899999999999999876 67788
Q ss_pred HHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008454 407 NALILGLCKEG-----KTKKAAYLVKDLDKNSLVPNASTYSALITGQCV----RKNSERAFQLYKSMIRSGCRPNKHIFE 477 (565)
Q Consensus 407 ~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~ 477 (565)
..|...|. .| ++++|...|++.. . -+...+..|...|.. ..++++|...|+...+.|. + ....
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~--~A~~ 358 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-N--SADF 358 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-T--THHH
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-H--HHHH
Confidence 88888887 55 9999999999887 3 366777777777766 4499999999999998773 3 3445
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 478 MLMSTFCQ----NEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 478 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
.|...|.. ..+.++|...++...+.|.. +....-..+......++.++|.++.++..+.
T Consensus 359 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 359 AIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 55555653 46899999999999988643 2222222223333445677788888776543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-12 Score=119.31 Aligned_cols=223 Identities=13% Similarity=-0.023 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008454 298 VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCK----KGKLHEANRIFSEMKATNVSPNVVTYNT 373 (565)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 373 (565)
..++..+...+...|++++|...+++..+.+ +..++..+...|.. .+++++|++.|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3344444444555555555555555554421 33444444555555 555555555555555443 4444555
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008454 374 LINGYGQ----VGNSEMGASLYEEMLRNGIKVDILTYNALILGLCK----EGKTKKAAYLVKDLDKNSLVPNASTYSALI 445 (565)
Q Consensus 374 li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 445 (565)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5555555 555555555555555543 44555555555555 555555555555555543 344455555
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008454 446 TGQCV----RKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ----NEDFDRAAEVLLEMLEKCMAPDSIILSELYSG 517 (565)
Q Consensus 446 ~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 517 (565)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 55555 556666666666665543 34455555555655 666666666666665542 24455555556
Q ss_pred HHh----cCCHHHHHHHHHHHHHCC
Q 008454 518 LHH----CGKDELAMKLFRKMEIRG 538 (565)
Q Consensus 518 ~~~----~g~~~~A~~~~~~m~~~g 538 (565)
|.. .|++++|.+.|++..+.|
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 665 666666666666665554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=5.2e-13 Score=130.88 Aligned_cols=249 Identities=10% Similarity=-0.019 Sum_probs=197.2
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSER-VDIALGFYKEMRRNRISPNVYTLNMVM 270 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~li 270 (565)
...+|..+...+.+.|++++|++.|+++.+.+.. +..+|+.+...+...|+ +++|+..|+++.+... -+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 5567888889999999999999999999987754 78899999999999997 9999999999988653 3778899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCH
Q 008454 271 HAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCK-KGKL 349 (565)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~ 349 (565)
.++...|++++|+..|+++++.... +...|..+..++.+.|++++|+..++++++... -+...|+.+..++.+ .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999887544 788899999999999999999999999988753 378889999998888 5665
Q ss_pred HHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----
Q 008454 350 HEA-----NRIFSEMKATNVSPNVVTYNTLINGYGQVG--NSEMGASLYEEMLRNGIKVDILTYNALILGLCKEG----- 417 (565)
Q Consensus 350 ~~A-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----- 417 (565)
++| ++.+++..... +-+...|..+...+...| ++++|.+.+.++ +. ...+...+..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 666 47788777754 446677888888888877 688888888887 33 3346777888888888764
Q ss_pred ----CHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHH
Q 008454 418 ----KTKKAAYLVKDL-DKNSLVPNASTYSALITGQ 448 (565)
Q Consensus 418 ----~~~~A~~~~~~~-~~~~~~p~~~~~~~li~~~ 448 (565)
..++|..+++++ .+.+.. ....|..+...+
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l 363 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSL 363 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 257888888887 554321 344555554443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=5.9e-13 Score=130.51 Aligned_cols=250 Identities=9% Similarity=0.015 Sum_probs=209.1
Q ss_pred CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCC-hHHHHHHHH
Q 008454 139 TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKK-FRNATDTFC 217 (565)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~ 217 (565)
....|..+..++...|++++|...++++++. .+.+..+|+.+..++...|+ +++|++.|+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l-------------------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~ 156 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL-------------------NAANYTVWHFRRVLLKSLQKDLHEEMNYIT 156 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-------------------CccCHHHHHHHHHHHHHcccCHHHHHHHHH
Confidence 4567888889999999999999999999987 56688899999999999997 999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008454 218 QMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPS 297 (565)
Q Consensus 218 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 297 (565)
++.+.+.. +..+|+.+..++...|++++|+..|+++++... -+...|..+..++...|++++|+..++++++.... +
T Consensus 157 ~al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~ 233 (382)
T 2h6f_A 157 AIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-N 233 (382)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-C
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-C
Confidence 99997755 889999999999999999999999999998653 37889999999999999999999999999987644 7
Q ss_pred HHHHHHHHHHHHh-cCChhHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHH
Q 008454 298 VTTYNTLISGHCN-KGLLSLA-----MKFKNLMEKNGIQPNVITFNTLIFGFCKKG--KLHEANRIFSEMKATNVSPNVV 369 (565)
Q Consensus 298 ~~~~~~li~~~~~-~g~~~~a-----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~ 369 (565)
...|+.+..++.+ .|..++| +..+++...... -+...|..+...+.+.| ++++|++.+.++ +. .+.+..
T Consensus 234 ~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~ 310 (382)
T 2h6f_A 234 NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPY 310 (382)
T ss_dssp HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHH
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHH
Confidence 8999999999999 6665888 478888877643 36788999999998888 689999999988 33 355677
Q ss_pred HHHHHHHHHHhcC---------ChHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHH
Q 008454 370 TYNTLINGYGQVG---------NSEMGASLYEEM-LRNGIKVDILTYNALILGLC 414 (565)
Q Consensus 370 ~~~~li~~~~~~g---------~~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~ 414 (565)
.+..+...|.+.| ..++|.++++++ .+.+. .....|..+...+.
T Consensus 311 al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 311 LIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHH
Confidence 8888999998874 258999999999 55422 24455665555554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.7e-13 Score=125.47 Aligned_cols=198 Identities=12% Similarity=0.096 Sum_probs=107.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPN--VYTLNMVMHA 272 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~ 272 (565)
.+......+...|++++|++.|+++.+.... +...+..+...+...|++++|+..+++..+.+..++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3445566666777777777777777665432 444666666666667777777777766665321111 2335566666
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008454 273 FCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEA 352 (565)
Q Consensus 273 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 352 (565)
+...|++++|++.+++..+.... +...+..+...|...|++++|...+++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666554322 34555555556666666666666665555442 22344444444233333455555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHH
Q 008454 353 NRIFSEMKATNVSPNVVTYNTLINGYGQVGN---SEMGASLYEEMLR 396 (565)
Q Consensus 353 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~ 396 (565)
.+.++++.+.. +.+...+..+...+...|+ +++|...++++.+
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 55555555442 2234444444555555454 4445555554443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-12 Score=121.03 Aligned_cols=198 Identities=10% Similarity=0.075 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 336 FNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCK 415 (565)
Q Consensus 336 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 415 (565)
+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...|..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 22334444444444444444444444444444322 134444455555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008454 416 EGKTKKAAYLVKDLDKNSLVP-NASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAE 494 (565)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 494 (565)
.|++++|...++++.+.+..| +...+..+...+...|++++|.+.++++++.. +.+...+..+...+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555554421222 23344555555555555555555555555542 3344555555555555566666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 495 VLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
.++++.+.. +.+...+..+...+...|+.++|.+.++++.+.
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 655555432 234445555555555566666666666655543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-12 Score=120.35 Aligned_cols=201 Identities=11% Similarity=-0.007 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 140 LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQM 219 (565)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 219 (565)
...+..++..+...|++++|...++++++. .+.+..++..+...|...|++++|++.|+++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 97 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI-------------------DPSSADAHAALAVVFQTEMEPKLADEEYRKA 97 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------------------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345566667777777777777777777765 3345666777777777777777777777777
Q ss_pred HHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 008454 220 RDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISP-NVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSV 298 (565)
Q Consensus 220 ~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 298 (565)
.+.+.. +...+..+...+...|++++|.+.|+++.+.+..| +...+..+...+...|++++|.+.++++.+... .+.
T Consensus 98 ~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 175 (252)
T 2ho1_A 98 LASDSR-NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQP 175 (252)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCH
T ss_pred HHHCcC-cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccH
Confidence 665432 56667777777777777777777777766522223 345566666666677777777777776665432 245
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 299 TTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKAT 362 (565)
Q Consensus 299 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 362 (565)
..+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 176 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 176 SVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 566666666666666666666666666543 234555666666666666666666666666554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-12 Score=116.22 Aligned_cols=202 Identities=9% Similarity=-0.002 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 333 VITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILG 412 (565)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 412 (565)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 3445555555555566666666555555432 23344555555555566666666666665555422 245555566666
Q ss_pred HHHc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 008454 413 LCKE-GKTKKAAYLVKDLDKNSLVPN-ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFD 490 (565)
Q Consensus 413 ~~~~-g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 490 (565)
+... |++++|...++.+.+.+..|+ ...+..+...+...|++++|...++++++.. +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 6666 666666666666655222222 3455666666666666666666666666543 334556666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 491 RAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 491 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
+|..+++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 66666666665432134555555666666666666666666666543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.8e-13 Score=123.98 Aligned_cols=247 Identities=9% Similarity=0.003 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 140 LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQM 219 (565)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 219 (565)
.+.+......+...|++++|...++++++. .+.+..++..+...|...|++++|++.|+++
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 63 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAK-------------------KYNSPYIYNRRAVCYYELAKYDLAQKDIETY 63 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHT-------------------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 345667788899999999999999999987 4456678889999999999999999999999
Q ss_pred HHCCCCc--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008454 220 RDYGFLP--IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPS 297 (565)
Q Consensus 220 ~~~~~~p--~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 297 (565)
.+....+ ...+|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|++.+++..+... .+
T Consensus 64 ~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~ 141 (272)
T 3u4t_A 64 FSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TD 141 (272)
T ss_dssp HTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CC
T ss_pred HhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-Cc
Confidence 8844222 24568999999999999999999999998764 33668899999999999999999999999987632 36
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCC-CCCC------
Q 008454 298 VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGK---LHEANRIFSEMKATN-VSPN------ 367 (565)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~~~------ 367 (565)
...|..+...+...+++++|.+.++++.+.. +.+...+..+...+...|+ +++|...+++..+.. -.|+
T Consensus 142 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 220 (272)
T 3u4t_A 142 PKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDEL 220 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHH
Confidence 7777777734555569999999999998864 2357788888888888888 888888888876531 1122
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008454 368 VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNAL 409 (565)
Q Consensus 368 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 409 (565)
...|..+...|...|++++|...++++.+.... +......+
T Consensus 221 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l 261 (272)
T 3u4t_A 221 IEANEYIAYYYTINRDKVKADAAWKNILALDPT-NKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-HHHHHHHh
Confidence 246777888888888888888888888876432 44444433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-12 Score=116.25 Aligned_cols=202 Identities=11% Similarity=-0.017 Sum_probs=107.1
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMH 271 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 271 (565)
++.++..+...+...|++++|++.|+++.+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3444555555555555555555555555543322 34555555555555555555555555554432 224445555555
Q ss_pred HHHHc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008454 272 AFCKL-GIIERAVEVFKNMESMGFIPS-VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKL 349 (565)
Q Consensus 272 ~~~~~-g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 349 (565)
.+... |++++|.+.++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 55555 556666555555555222222 3445555555556666666666665555442 12355555555666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 350 HEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLR 396 (565)
Q Consensus 350 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 396 (565)
++|.+.++++.+.....+...+..+...+...|+.+.|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66666666655542113444555555555566666666666665554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-13 Score=127.86 Aligned_cols=222 Identities=11% Similarity=-0.088 Sum_probs=135.4
Q ss_pred hcCChHHHHHHHHHHHHCCCC---cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008454 205 HRKKFRNATDTFCQMRDYGFL---PIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIER 281 (565)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~---p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 281 (565)
..|++++|++.|+++.+.... .+..++..+...+...|++++|...|+++.+.. +.+...|..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346778888888888775321 145667777777777888888888887777653 2356677777777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 282 AVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKA 361 (565)
Q Consensus 282 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 361 (565)
|.+.+++..+.... +...+..+...+.+.|++++|...++++.+.. |+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 77777777765322 45666677777777777777777777776642 3333333444444556777777777766555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 362 TNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKV---DILTYNALILGLCKEGKTKKAAYLVKDLDKN 432 (565)
Q Consensus 362 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (565)
.. +++...+ .++..+...++.++|...+....+..... +..++..+...|...|++++|...|+++.+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 42 2232222 34555555566666666666654431110 1344555555555555555555555555543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.4e-13 Score=125.77 Aligned_cols=221 Identities=10% Similarity=-0.067 Sum_probs=93.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008454 301 YNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQ 380 (565)
Q Consensus 301 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 380 (565)
+..+...+...|++++|...++++.+.. +.+..+|..+...+...|++++|.+.++++.+.. +.+...+..+...+..
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~ 123 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYY 123 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHH
Confidence 3334444444444444444444444332 1133444444444444444444444444444332 2233444444444444
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008454 381 VGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQL 460 (565)
Q Consensus 381 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~ 460 (565)
.|++++|...++++.+.. |+.......+..+...|++++|...++....... ++...+ .++..+...++.++|+..
T Consensus 124 ~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 124 GGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMER 199 (275)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHH
Confidence 444444444444444421 1111222222233344555555555544433221 122222 234444445555555555
Q ss_pred HHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 461 YKSMIRSGCR---PNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLF 531 (565)
Q Consensus 461 ~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 531 (565)
+.++.+.... .+..++..+...+.+.|++++|...++++++.. |+. +.....++...|++++|.+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 200 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 5555432100 013455556666666666666666666665542 211 112233445555555555544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=7e-13 Score=121.87 Aligned_cols=201 Identities=11% Similarity=0.097 Sum_probs=119.4
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMH 271 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 271 (565)
.+..|..+...+...|++++|+..|+++.+.... +...+..+...+...|++++|+..|+++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4556777777788888888888888888775433 57777777777777888888888887776653 235666777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008454 272 AFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHE 351 (565)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 351 (565)
.+...|++++|.+.++++.+... .+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777766532 255666666666777777777777777666543 2245566666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 352 ANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRN 397 (565)
Q Consensus 352 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 397 (565)
|.+.++++.+.. +.+...+..+..++...|++++|...++++.+.
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666665543 334555666666666666666666666666554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=8.1e-13 Score=121.46 Aligned_cols=194 Identities=13% Similarity=0.076 Sum_probs=71.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008454 303 TLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVG 382 (565)
Q Consensus 303 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 382 (565)
.+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|++.++++.+.. +.+...+..+...+...|
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 105 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKE 105 (243)
T ss_dssp --------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhc
Confidence 33333444444444444444443321 1133334444444444444444444444443332 123333334444444444
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008454 383 NSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYK 462 (565)
Q Consensus 383 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~ 462 (565)
++++|...++++.+... .+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++
T Consensus 106 ~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp CHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444444433321 13333444444444444444444444444332211 33334444444444444444444444
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 463 SMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 463 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
++.+.. +.+..++..+..++...|++++|...++++.+
T Consensus 184 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 184 AVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 444332 22333444444444444444444444444443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.9e-13 Score=133.08 Aligned_cols=278 Identities=14% Similarity=0.017 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCH
Q 008454 228 IESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNV----YTLNMVMHAFCKLGIIERAVEVFKNMESM----GF-IPSV 298 (565)
Q Consensus 228 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~ 298 (565)
...+..+...+...|++++|+..|+++.+.+.. +. ..+..+...+...|++++|.+.+++..+. +. ....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344455566667777777777777777664321 22 35666666666777777777777665432 11 1123
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHH
Q 008454 299 TTYNTLISGHCNKGLLSLAMKFKNLMEKN----G-IQPNVITFNTLIFGFCKKGK-----------------LHEANRIF 356 (565)
Q Consensus 299 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 356 (565)
..+..+...|...|++++|...+++..+. + ......++..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 44555555666666666666666555432 1 01122344445555555555 45555444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 357 SEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGI-KVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLV 435 (565)
Q Consensus 357 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 435 (565)
++..+.. ...+. .....++..+...|...|++++|...+++..+....
T Consensus 207 ~~al~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 207 QENLKLM-------------------------------RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-------------------------------HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 4432210 00000 011234445555555555555555555554331100
Q ss_pred -CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-
Q 008454 436 -PN----ASTYSALITGQCVRKNSERAFQLYKSMIRSGC--R---PNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCM- 504 (565)
Q Consensus 436 -p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 504 (565)
.+ ...+..+...|...|++++|...++++++... . ....++..+...+...|++++|..++++.++...
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 01 12455566666666666666666666554310 0 0134556666666677777777777666654310
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 505 ----APDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 505 ----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
.....++..+...|.+.|++++|.+.+++..+.
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 011235566666777777777777777766543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-12 Score=130.77 Aligned_cols=273 Identities=13% Similarity=0.012 Sum_probs=158.6
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHC----CCCC-C
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPI----IESCNKFLSSLLDSERVDIALGFYKEMRRN----RISP-N 262 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~p-~ 262 (565)
....+......+...|++++|+..|+++.+.+.. + ..++..+...+...|++++|...+++.... +-.| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4456667788889999999999999998886533 3 357888888888999999999988876432 1111 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCC--------------------hhHH
Q 008454 263 VYTLNMVMHAFCKLGIIERAVEVFKNMESMGFI-PS----VTTYNTLISGHCNKGL--------------------LSLA 317 (565)
Q Consensus 263 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~--------------------~~~a 317 (565)
..++..+...+...|++++|...+++..+.... .+ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 456677777888888888888888776543100 11 3356666777777777 7777
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHHH
Q 008454 318 MKFKNLMEKN----GIQP-NVITFNTLIFGFCKKGKLHEANRIFSEMKATNV-SPN----VVTYNTLINGYGQVGNSEMG 387 (565)
Q Consensus 318 ~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A 387 (565)
...+++..+. +..+ ...++..+...|...|++++|.+.+++..+... .++ ...+..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7666655431 1111 123455566666666777777666666543210 011 12455555566666666666
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHH
Q 008454 388 ASLYEEMLRN----GIKV-DILTYNALILGLCKEGKTKKAAYLVKDLDKNSLV-PN----ASTYSALITGQCVRKNSERA 457 (565)
Q Consensus 388 ~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~~~~~~A 457 (565)
...+++..+. +..+ ...++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6666555432 1000 0334455555555555555555555544321000 01 22344444445555555555
Q ss_pred HHHHHHHH
Q 008454 458 FQLYKSMI 465 (565)
Q Consensus 458 ~~~~~~m~ 465 (565)
.+.+++.+
T Consensus 327 ~~~~~~al 334 (406)
T 3sf4_A 327 MHFAEKHL 334 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.49 E-value=7.6e-10 Score=115.78 Aligned_cols=411 Identities=9% Similarity=0.019 Sum_probs=262.8
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCC---chhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccC--CC
Q 008454 117 QKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRK---FKSSESILRGILDSDSFDLPSKLFDSILYSYRMC--DS 191 (565)
Q Consensus 117 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 191 (565)
.+....+..+|+.+....| .....|...+..-.+.+. ++.+..+|++.+.. + ++
T Consensus 79 ~~~~~~aR~vyEraL~~fP--~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~-------------------~~~~~ 137 (679)
T 4e6h_A 79 LKQWKQVYETFDKLHDRFP--LMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK-------------------ELGNN 137 (679)
T ss_dssp TTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS-------------------SSCCC
T ss_pred cCcHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh-------------------cCCCC
Confidence 3567778888888877644 566777777777777777 88888888888776 4 36
Q ss_pred ChHHHHHHHHHHHhcCCh--------HHHHHHHHHHHH-CCC-Cc-CHHHHHHHHHHHHc---------CCChHHHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKF--------RNATDTFCQMRD-YGF-LP-IIESCNKFLSSLLD---------SERVDIALGFY 251 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~-~~~-~p-~~~~~~~ll~~~~~---------~~~~~~A~~~~ 251 (565)
++..|...+....+.++. +...++|+.... .|. .+ +...|...+..... .++++.+..+|
T Consensus 138 sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy 217 (679)
T 4e6h_A 138 DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLY 217 (679)
T ss_dssp CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHH
Confidence 777887777766665543 334467777654 355 34 45677777766542 33466778888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHhC--CCC---------------C-----
Q 008454 252 KEMRRNRISPNVYTLNMVMHAFCKLG-------------IIERAVEVFKNMESM--GFI---------------P----- 296 (565)
Q Consensus 252 ~~m~~~~~~p~~~~~~~li~~~~~~g-------------~~~~a~~~~~~m~~~--g~~---------------p----- 296 (565)
+..+......-..+|......--..+ +++.|...+.++... ++. |
T Consensus 218 ~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~ 297 (679)
T 4e6h_A 218 KTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEY 297 (679)
T ss_dssp HHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCC
T ss_pred HHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchh
Confidence 88774311111234433322211111 122333444433211 111 1
Q ss_pred C---HHHHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhCCCC
Q 008454 297 S---VTTYNTLISGHCNKG-------LLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEAN-RIFSEMKATNVS 365 (565)
Q Consensus 297 ~---~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~ 365 (565)
+ ...|...+..--..+ ..+.+..+|++.... .+-+...|...+..+...|+.++|. ++|++.... ++
T Consensus 298 ~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P 375 (679)
T 4e6h_A 298 DVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IP 375 (679)
T ss_dssp CHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CC
Confidence 0 134444444322222 123345567777654 2346778888888888888888886 999988764 34
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---------CCC------------CHHHHHHHHHHHHHcCCHHHHHH
Q 008454 366 PNVVTYNTLINGYGQVGNSEMGASLYEEMLRNG---------IKV------------DILTYNALILGLCKEGKTKKAAY 424 (565)
Q Consensus 366 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~~------------~~~~~~~li~~~~~~g~~~~A~~ 424 (565)
.+...|...+...-+.|+++.|..+|+.+.+.. ..| ...+|...+....+.|..+.|..
T Consensus 376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 566667778888888999999999999887631 012 13467778888888899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008454 425 LVKDLDKNSLVPNASTYSALITGQCVR-KNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKC 503 (565)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 503 (565)
+|..+.+.........|...+..-.+. ++.+.|.++|+..++. ++-+...+...+......|+.+.|..+|++.+...
T Consensus 456 vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 456 IFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 999998751111233443333332333 4589999999999987 45566677788888888899999999999998864
Q ss_pred CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHhhc
Q 008454 504 MAP--DSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTINCA 553 (565)
Q Consensus 504 ~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 553 (565)
..+ ....|...+..-.+.|+.+.+.++.+++.+.- |+......++.-|
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence 322 34578888888888999999999999998763 4444444444433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.4e-13 Score=132.32 Aligned_cols=235 Identities=14% Similarity=0.011 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHC----CC-CCCHH
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPII----ESCNKFLSSLLDSERVDIALGFYKEMRRN----RI-SPNVY 264 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~-~p~~~ 264 (565)
..+..+...+...|++++|+..|+++.+.+.. +. .++..+...+...|++++|+..|++..+. +- .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34556778899999999999999999887543 33 57889999999999999999999987652 11 22346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCC-----------------hhHHHHHHH
Q 008454 265 TLNMVMHAFCKLGIIERAVEVFKNMESM----GF-IPSVTTYNTLISGHCNKGL-----------------LSLAMKFKN 322 (565)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~-----------------~~~a~~~~~ 322 (565)
.+..+...|...|++++|...+++..+. +- .....++..+...|...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7888889999999999999999987654 11 1234577888899999999 888888887
Q ss_pred HHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 323 LMEKN----GI-QPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNV-SPN----VVTYNTLINGYGQVGNSEMGASLYE 392 (565)
Q Consensus 323 ~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~ 392 (565)
+..+. +. .....++..+...|...|++++|++.+++..+... ..+ ...+..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 76542 11 11234666777788888888888888877654310 011 1245556666666666666666666
Q ss_pred HHHHCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008454 393 EMLRNGIK-----VDILTYNALILGLCKEGKTKKAAYLVKDL 429 (565)
Q Consensus 393 ~m~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 429 (565)
+..+.... ....++..+...|...|++++|...+++.
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55432100 01234444555555555555555555544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-12 Score=128.42 Aligned_cols=277 Identities=15% Similarity=0.051 Sum_probs=130.5
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-C
Q 008454 227 IIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPN----VYTLNMVMHAFCKLGIIERAVEVFKNMESM----GFIP-S 297 (565)
Q Consensus 227 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~ 297 (565)
....+......+...|++++|...|+++.+.+.. + ...+..+...+...|++++|...+++.... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 4445555566666666666666666666554211 2 234555556666666666666666654322 1111 1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCC--------------------HHHH
Q 008454 298 VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQ-PN----VITFNTLIFGFCKKGK--------------------LHEA 352 (565)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~~A 352 (565)
..++..+...+...|++++|...+++..+.... .+ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 334444555555555555555555555443100 01 2234444445555555 4445
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 353 NRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIK-VDILTYNALILGLCKEGKTKKAAYLVKDLDK 431 (565)
Q Consensus 353 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 431 (565)
.+.+++..... .+.+.. ....++..+...|...|++++|...+++..+
T Consensus 167 ~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 167 VDFYEENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHHHHH-------------------------------HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------------------------------HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44444433210 000100 0122344445555555555555555554432
Q ss_pred CCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 432 NSL-VPN----ASTYSALITGQCVRKNSERAFQLYKSMIRSGC-RPN----KHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 432 ~~~-~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
... .++ ...+..+...+...|++++|...+++.++... ..+ ..++..+...+...|++++|...++++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 100 011 12445555555555555555555555543210 001 33455555555666666666666655543
Q ss_pred cCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 502 KCMA-PD----SIILSELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 502 ~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
.... .+ ..++..+...|...|++++|.+.+++..
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2100 01 2345555556666666666666665543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.9e-12 Score=122.07 Aligned_cols=134 Identities=16% Similarity=0.063 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----H
Q 008454 404 LTYNALILGLCKEGKTKKAAYLVKDLDKNSL-VPN----ASTYSALITGQCVRKNSERAFQLYKSMIRSGC-RPN----K 473 (565)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~ 473 (565)
..+..+...+...|++++|...+++..+... .++ ...+..+...+...|++++|...+++.++... ..+ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 3556666666777777777777766543210 011 22566777777778888888888777765310 011 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 474 HIFEMLMSTFCQNEDFDRAAEVLLEMLEKC----MA-PDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
.++..+...+...|++++|...++++.+.. .. ....++..+...|.+.|++++|.+.+++..+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 566777778888888888888888776531 11 11346777888888888888888888887654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.9e-12 Score=122.08 Aligned_cols=276 Identities=12% Similarity=-0.004 Sum_probs=151.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHC----CCC-CCHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPI----IESCNKFLSSLLDSERVDIALGFYKEMRRN----RIS-PNVYT 265 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~-p~~~~ 265 (565)
.+......+...|++++|+..|+++.+.+.. + ...+..+...+...|++++|.+.+++..+. +.. .....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3445667788888999999999888776433 3 466778888888888888888888776432 111 12445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------hhHHHHH
Q 008454 266 LNMVMHAFCKLGIIERAVEVFKNMESMGF-IPS----VTTYNTLISGHCNKGL--------------------LSLAMKF 320 (565)
Q Consensus 266 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~~~ 320 (565)
+..+...+...|++++|.+.+++..+... ..+ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 66666677777777777777766543210 011 2345555566666666 5555555
Q ss_pred HHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 008454 321 KNLMEKN----GIQ-PNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEML 395 (565)
Q Consensus 321 ~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 395 (565)
+++.... +.. ....++..+...+...|++++|.+.+++..+...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------------------------- 214 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK------------------------------- 214 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-------------------------------
Confidence 5443321 100 0122344444444455555555555444432100
Q ss_pred HCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--
Q 008454 396 RNGI-KVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLV-PN----ASTYSALITGQCVRKNSERAFQLYKSMIRS-- 467 (565)
Q Consensus 396 ~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-- 467 (565)
..+. .....++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...++++++.
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 0000 001224455555555555555555555554321100 01 334556666666666666666666666542
Q ss_pred --CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 468 --GC-RPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 468 --~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
+- .....++..+...+.+.|++++|...++++.+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 10 011335666677777777777777777777654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-11 Score=119.73 Aligned_cols=230 Identities=12% Similarity=-0.016 Sum_probs=147.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC----CCCHHHHH
Q 008454 304 LISGHCNKGLLSLAMKFKNLMEKN----GIQP-NVITFNTLIFGFCKKGKLHEANRIFSEMKAT--NV----SPNVVTYN 372 (565)
Q Consensus 304 li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~----~~~~~~~~ 372 (565)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|++.+++..+. .. .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344556667777777777766543 1111 2345666677777777777777777766542 10 01124566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 008454 373 TLINGYGQVGNSEMGASLYEEMLRN----GIK-VDILTYNALILGLCKEGKTKKAAYLVKDLDK-----NSLVPNASTYS 442 (565)
Q Consensus 373 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 442 (565)
.+...|...|++++|...+++..+. +.. ....++..+...|...|++++|...+++..+ ........++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6777777777888777777776643 111 1124677778888888888888888887765 22122355677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 008454 443 ALITGQCVRKNSERAFQLYKSMIRS----GCRPNKHIFEMLMSTFCQNED---FDRAAEVLLEMLEKCMAPD-SIILSEL 514 (565)
Q Consensus 443 ~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l 514 (565)
.+...+...|++++|...+++.++. +-+.....+..+...+...|+ +++|..++++. +..++ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 7888888888888888888877653 111112335667777777888 66666666655 22222 3466778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 008454 515 YSGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 515 i~~~~~~g~~~~A~~~~~~m~~ 536 (565)
...|...|++++|.+.+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888889999999988888754
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.4e-11 Score=104.73 Aligned_cols=165 Identities=15% Similarity=0.070 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 333 VITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILG 412 (565)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 412 (565)
...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|...+......... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 3344444444444444444444444444332 223334444444444444444444444444433221 33334444444
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 413 LCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRA 492 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 492 (565)
+...++++.|...+.+..+.... +...+..+...+...|++++|++.|++.++.. +.+..+|..+..++.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 44444444444444444333221 33344444444444444444444444444432 22334444444444444444444
Q ss_pred HHHHHHHHH
Q 008454 493 AEVLLEMLE 501 (565)
Q Consensus 493 ~~~~~~~~~ 501 (565)
.+.|+++++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.4e-10 Score=108.19 Aligned_cols=217 Identities=9% Similarity=-0.028 Sum_probs=145.6
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHH-
Q 008454 157 KSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAH-------RKKF-------RNATDTFCQMRD- 221 (565)
Q Consensus 157 ~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~~~~- 221 (565)
++|..+++++++. .|.++.+|..++..+.. .|++ ++|+.+|++..+
T Consensus 33 ~~a~~~~~~al~~-------------------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~ 93 (308)
T 2ond_A 33 KRVMFAYEQCLLV-------------------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 93 (308)
T ss_dssp HHHHHHHHHHHHH-------------------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH-------------------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH
Confidence 5677777777776 56688888888887763 4775 888888888887
Q ss_pred CCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008454 222 YGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPN-VY-TLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVT 299 (565)
Q Consensus 222 ~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 299 (565)
.... +...|..++..+.+.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|.++|++..+... .+..
T Consensus 94 ~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~ 169 (308)
T 2ond_A 94 LLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHH 169 (308)
T ss_dssp TTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTH
T ss_pred hCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHH
Confidence 3432 6678888888888888888888888888764 333 33 677777777788888888888888776542 2334
Q ss_pred HHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHH
Q 008454 300 TYNTLISGHC-NKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATN-VSP--NVVTYNTLI 375 (565)
Q Consensus 300 ~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~--~~~~~~~li 375 (565)
.|........ ..|++++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++..... ++| ....|..++
T Consensus 170 ~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~ 248 (308)
T 2ond_A 170 VYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 248 (308)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4433332222 2577777777777666542 2256666666677777777777777777766642 233 345566666
Q ss_pred HHHHhcCChHHHHHHHHHHHHC
Q 008454 376 NGYGQVGNSEMGASLYEEMLRN 397 (565)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~m~~~ 397 (565)
....+.|+.+.|..+++++.+.
T Consensus 249 ~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 249 AFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6666667777777776666654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.6e-10 Score=107.95 Aligned_cols=185 Identities=12% Similarity=0.110 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 008454 350 HEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDIL-TYNALILGLCKEGKTKKAAYLVKD 428 (565)
Q Consensus 350 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 428 (565)
++|..+|++..+.-.+-+...|..++..+.+.|++++|..+|+++.+.... +.. +|..++..+.+.|++++|..+|++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 555555555554211223344555555555555555555555555553211 122 555555555555566666666665
Q ss_pred HHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC
Q 008454 429 LDKNSLVPNASTYSALITGQC-VRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKC-MAP 506 (565)
Q Consensus 429 ~~~~~~~p~~~~~~~li~~~~-~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p 506 (565)
..+.... +...|........ ..|+.++|..+|+++++.. +-+...|..++..+.+.|++++|..+|+++++.. +.|
T Consensus 160 a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhcCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 5554321 2333332222211 2466666666666665542 3345555555555666666666666666665542 233
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 507 --DSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 507 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
....|..++..+.+.|+.++|..+++++.+.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2445555555556666666666666665543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-11 Score=120.11 Aligned_cols=298 Identities=11% Similarity=-0.001 Sum_probs=208.1
Q ss_pred HHhcCChHHHHHHHHHHHHC--CC--CcCHHHHHHHHHHH--HcCCChHHHH-----------HHHHHHHHCCCCCC---
Q 008454 203 YAHRKKFRNATDTFCQMRDY--GF--LPIIESCNKFLSSL--LDSERVDIAL-----------GFYKEMRRNRISPN--- 262 (565)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~--~~--~p~~~~~~~ll~~~--~~~~~~~~A~-----------~~~~~m~~~~~~p~--- 262 (565)
+.+.+++++|..+++++.+. .. .++...|..++..- ...+..+.+. +.++.+.......+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45689999999999998664 22 22333334333321 1223333333 66666543211101
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--C----C
Q 008454 263 -VYTLNMVMHAFCKLGIIERAVEVFKNMESM----GFIP-SVTTYNTLISGHCNKGLLSLAMKFKNLMEKNG--I----Q 330 (565)
Q Consensus 263 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~----~ 330 (565)
...+......+...|++++|.+.+++..+. +-.+ ...++..+...|...|++++|...+++..+.. . .
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 112223556677899999999999998764 2111 34678889999999999999999999876531 1 1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCC
Q 008454 331 PNVITFNTLIFGFCKKGKLHEANRIFSEMKATNV-SPN----VVTYNTLINGYGQVGNSEMGASLYEEMLR-----NGIK 400 (565)
Q Consensus 331 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~ 400 (565)
....+++.+...|...|++++|++.+++..+... ..+ ..++..+...|...|++++|...+++..+ ....
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1245788888999999999999999998775310 111 24688899999999999999999999887 3313
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCH
Q 008454 401 VDILTYNALILGLCKEGKTKKAAYLVKDLDKNS----LVPNASTYSALITGQCVRKN---SERAFQLYKSMIRSGCRPNK 473 (565)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~~~~p~~ 473 (565)
....++..+...|.+.|++++|...+++..+.. .......+..+...+...|+ +++|+.++++... .+...
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~ 339 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLE 339 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHH
Confidence 356789999999999999999999999876531 11112335677788888898 7777777776621 12234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 474 HIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
..+..+...|...|++++|...+++..+.
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 56778899999999999999999988653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.41 E-value=8.3e-11 Score=102.96 Aligned_cols=171 Identities=14% Similarity=0.085 Sum_probs=151.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008454 367 NVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALIT 446 (565)
Q Consensus 367 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 446 (565)
+...|..+...|...|++++|+..|++..+.... +..++..+..+|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 5678999999999999999999999999987544 7889999999999999999999999999876544 6778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008454 447 GQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDEL 526 (565)
Q Consensus 447 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 526 (565)
.+...++++.|...+.+..+.. +-+...+..+...+.+.|++++|++.++++++.. +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999874 5678889999999999999999999999999874 3467889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCH
Q 008454 527 AMKLFRKMEIRGLLPKG 543 (565)
Q Consensus 527 A~~~~~~m~~~g~~p~~ 543 (565)
|.+.|++..+. .|+.
T Consensus 160 A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHHHHHT--THHH
T ss_pred HHHHHHHHHhC--CccC
Confidence 99999999875 3543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-11 Score=123.42 Aligned_cols=212 Identities=11% Similarity=-0.044 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008454 279 IERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLL-SLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFS 357 (565)
Q Consensus 279 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 357 (565)
++++++.+++..... ..+...+..+...+...|++ ++|.+.+++..+.. +-+...|..+..+|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555444332 12556666666666666666 66666666666543 2245666666666666677777777766
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCHH
Q 008454 358 EMKATNVSPNVVTYNTLINGYGQV---------GNSEMGASLYEEMLRNGIKVDILTYNALILGLCKE--------GKTK 420 (565)
Q Consensus 358 ~m~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~~ 420 (565)
+..+. .|+...+..+...+... |++++|...+++..+.... +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 66655 34456666666666666 6666666666666655322 455666666666666 6666
Q ss_pred HHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 421 KAAYLVKDLDKNSLV--PNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVL 496 (565)
Q Consensus 421 ~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 496 (565)
+|...|++..+.... -+...|..+...|...|++++|.+.|+++++.. +-+...+..+..++...|++++|.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666554220 155566666666666666666666666666553 334455556666666666666665543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-11 Score=124.40 Aligned_cols=215 Identities=12% Similarity=0.021 Sum_probs=185.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 008454 313 LLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKL-HEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLY 391 (565)
Q Consensus 313 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 391 (565)
.++++...++...... +.+...+..+...+...|++ ++|++.|++..+.. +-+...|..+..+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566677777666543 34788899999999999999 99999999998874 456889999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCH
Q 008454 392 EEMLRNGIKVDILTYNALILGLCKE---------GKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVR--------KNS 454 (565)
Q Consensus 392 ~~m~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------~~~ 454 (565)
++..+.. |+...+..+...|... |++++|...++++.+.... +...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 9999864 6678999999999999 9999999999999887544 688899999999998 999
Q ss_pred HHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 455 ERAFQLYKSMIRSGCR---PNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLF 531 (565)
Q Consensus 455 ~~A~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 531 (565)
++|++.|+++++.. + -+...|..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.+
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999874 3 478999999999999999999999999998874 336678888999999999999998866
Q ss_pred HHH
Q 008454 532 RKM 534 (565)
Q Consensus 532 ~~m 534 (565)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.4e-12 Score=120.52 Aligned_cols=171 Identities=17% Similarity=0.116 Sum_probs=125.3
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC------
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDY-------GFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRN------ 257 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~------ 257 (565)
....++..+...|...|++++|+..|+++.+. .......++..+...+...|++++|...+++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 35577888999999999999999999998773 22235677888899999999999999999887653
Q ss_pred CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--
Q 008454 258 RI-SPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM------GFIP-SVTTYNTLISGHCNKGLLSLAMKFKNLMEKN-- 327 (565)
Q Consensus 258 ~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 327 (565)
+- +....++..+...+...|++++|.+.+++..+. +..| ....+..+...+...|++++|.++++++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 11 223566777888888888888888888887653 1112 3455667777788888888888888777653
Q ss_pred ----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 328 ----GIQP-NVITFNTLIFGFCKKGKLHEANRIFSEMKA 361 (565)
Q Consensus 328 ----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 361 (565)
+..| ...++..+...|...|++++|.+.++++.+
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 244566777778888888888888877764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.7e-11 Score=113.93 Aligned_cols=239 Identities=17% Similarity=0.108 Sum_probs=170.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------C
Q 008454 297 SVTTYNTLISGHCNKGLLSLAMKFKNLMEKN-------GIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKAT------N 363 (565)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~ 363 (565)
+..++..+...+...|++++|..+++++.+. .......++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4677888999999999999999999998873 22334667888899999999999999999988764 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---
Q 008454 364 V-SPNVVTYNTLINGYGQVGNSEMGASLYEEMLRN------GI-KVDILTYNALILGLCKEGKTKKAAYLVKDLDKN--- 432 (565)
Q Consensus 364 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--- 432 (565)
. +.....+..+...+...|++++|...++++.+. +. ......+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 233567888899999999999999999998864 22 224567888999999999999999999998764
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 008454 433 ---SLVP-NASTYSALITGQCVRKNSERAFQLYKSMIRS-------GCRPNK-------HIFEMLMSTFCQNEDFDRAAE 494 (565)
Q Consensus 433 ---~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~-------~~~~~li~~~~~~g~~~~A~~ 494 (565)
+..| ....+..+...+...|++++|.+.++++++. ...+.. ..+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2122 3457888899999999999999999999863 111111 122223333444555666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 495 VLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 536 (565)
.++..... ...+..++..+..+|.+.|++++|.+.|++..+
T Consensus 266 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666543 223456788999999999999999999998765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.34 E-value=9e-09 Score=107.70 Aligned_cols=401 Identities=9% Similarity=0.010 Sum_probs=257.7
Q ss_pred CCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCC-CcCH
Q 008454 153 NRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKK---FRNATDTFCQMRDYGF-LPII 228 (565)
Q Consensus 153 ~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~-~p~~ 228 (565)
-.+++.-..+++...+.+.+...+.+|+.++.. .|.....|...+..-.+.|+ ++.+.++|++...... .|++
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~---fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv 139 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR---FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDL 139 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCH
Confidence 356777777777776666666667777777765 44566777777887778787 8888888888877542 3678
Q ss_pred HHHHHHHHHHHcCCCh--------HHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHH---------HcCCHHHHHHHHHH
Q 008454 229 ESCNKFLSSLLDSERV--------DIALGFYKEMRR-NRI-SPN-VYTLNMVMHAFC---------KLGIIERAVEVFKN 288 (565)
Q Consensus 229 ~~~~~ll~~~~~~~~~--------~~A~~~~~~m~~-~~~-~p~-~~~~~~li~~~~---------~~g~~~~a~~~~~~ 288 (565)
..|...+....+.++. +.+.++|+.... .|. .++ ...|...+.... ..++++.+.++|+.
T Consensus 140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 8888877766665543 234467766543 455 443 467777665433 23456778888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-------------ChhHHHHHHHHHHH--CCCC---------------C-----C-
Q 008454 289 MESMGFIPSVTTYNTLISGHCNKG-------------LLSLAMKFKNLMEK--NGIQ---------------P-----N- 332 (565)
Q Consensus 289 m~~~g~~p~~~~~~~li~~~~~~g-------------~~~~a~~~~~~m~~--~g~~---------------~-----~- 332 (565)
........-..+|......--..+ +++.|...+.++.. .++. | +
T Consensus 220 aL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 220 LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp HTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred HHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 775422212344433322211111 12223333333321 1111 0 0
Q ss_pred --HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHHCCCCCC
Q 008454 333 --VITFNTLIFGFCKKG-------KLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGA-SLYEEMLRNGIKVD 402 (565)
Q Consensus 333 --~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~ 402 (565)
...|...+..--..+ ..+.+..+|+++... ++-+...|...+..+...|+.++|. .+|++.... ++.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 133444444322222 123456677777665 2456777877888888889999996 999999875 3446
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 403 ILTYNALILGLCKEGKTKKAAYLVKDLDKNS---------LVPN------------ASTYSALITGQCVRKNSERAFQLY 461 (565)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~p~------------~~~~~~li~~~~~~~~~~~A~~~~ 461 (565)
...|...+....+.|++++|..+|+.+.+.. -.|+ ...|...+....+.|+.+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7778888888999999999999999987631 0132 236777788778889999999999
Q ss_pred HHHHHc-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008454 462 KSMIRS-GCRPNKHIFEMLMSTFCQN-EDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGL 539 (565)
Q Consensus 462 ~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 539 (565)
.++++. + ......|...+..-.+. ++.+.|..+|+..++. .+-+...|...++.....|+.+.|+.+|++......
T Consensus 458 ~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 458 GKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 999876 2 22334443333333333 5589999999999887 455677788889988899999999999999977653
Q ss_pred CC--CHhhHHHHHhhcccCCCcc
Q 008454 540 LP--KGFDKLRTINCAPENGEKE 560 (565)
Q Consensus 540 ~p--~~~~~~~ll~~~~~~g~~~ 560 (565)
.+ ....|...+.-=.+.|+.+
T Consensus 536 ~~~~~~~lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 536 DSHLLKMIFQKVIFFESKVGSLN 558 (679)
T ss_dssp STTHHHHHHHHHHHHHHHTCCSH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHH
Confidence 22 2346666666555666654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.7e-10 Score=110.64 Aligned_cols=228 Identities=11% Similarity=0.035 Sum_probs=138.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCC-C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-C-CCHHHHHH
Q 008454 305 ISGHCNKGLLSLAMKFKNLMEKNGIQ-P----NVITFNTLIFGFCKKGKLHEANRIFSEMKAT----NV-S-PNVVTYNT 373 (565)
Q Consensus 305 i~~~~~~g~~~~a~~~~~~m~~~g~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~-~~~~~~~~ 373 (565)
...+...|++++|...+++..+.... + ...++..+...|...|+++.|...+++..+. +. . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 34455666777777766666543100 1 2345566666677777777777776665542 10 0 11345566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 008454 374 LINGYGQVGNSEMGASLYEEMLRN----GIK-VDILTYNALILGLCKEGKTKKAAYLVKDLDK-----NSLVPNASTYSA 443 (565)
Q Consensus 374 li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~ 443 (565)
+...|...|++++|...+++..+. +.. ....++..+..+|...|++++|...+++..+ .... ...++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHH
Confidence 666777777777777777666542 111 1234566677777777787777777777665 3322 2556777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 008454 444 LITGQCVRKNSERAFQLYKSMIRSG----CRPNKHIFEMLMSTFCQNED---FDRAAEVLLEMLEKCMAPD-SIILSELY 515 (565)
Q Consensus 444 li~~~~~~~~~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~li 515 (565)
+...+.+.|++++|...+++.++.. -+.....+..+...+...++ +++|..++++. +..++ ...+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 7777888888888888888777641 11123345555556666677 66666666542 22222 23566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 008454 516 SGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 516 ~~~~~~g~~~~A~~~~~~m~~ 536 (565)
..|...|++++|.+.|++..+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 788888888888888887653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.6e-10 Score=109.09 Aligned_cols=306 Identities=9% Similarity=0.018 Sum_probs=211.9
Q ss_pred ChHHHHHHHHHH--HhcCChHHHHHHHHHHHHC--CC--CcCHHHHHHHHHHH--HcCCChHHHH---------HHHHHH
Q 008454 192 SPLVFDLLFKTY--AHRKKFRNATDTFCQMRDY--GF--LPIIESCNKFLSSL--LDSERVDIAL---------GFYKEM 254 (565)
Q Consensus 192 ~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~--~~--~p~~~~~~~ll~~~--~~~~~~~~A~---------~~~~~m 254 (565)
+..+-+.|-..| .+.+++++|.++++++... .. ..++..|-.++..- .-.+....+. +.++.+
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence 455566666677 7899999999999987553 22 22344444444321 1112222222 555555
Q ss_pred HHCCCCCC--H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008454 255 RRNRISPN--V--YTLNMVMHAFCKLGIIERAVEVFKNMESMGF-IPS----VTTYNTLISGHCNKGLLSLAMKFKNLME 325 (565)
Q Consensus 255 ~~~~~~p~--~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~ 325 (565)
.....+.+ . ..+......+...|++++|+..+++..+... .++ ..++..+...|...|+++.|...+++..
T Consensus 89 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 89 ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 43211101 1 1233344556789999999999999876411 122 4577888899999999999999998876
Q ss_pred HC----CC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 326 KN----GI-Q-PNVITFNTLIFGFCKKGKLHEANRIFSEMKAT----NVS-PNVVTYNTLINGYGQVGNSEMGASLYEEM 394 (565)
Q Consensus 326 ~~----g~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m 394 (565)
+. +. . ....+++.+...|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|...+++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 169 DIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 43 11 1 12557788899999999999999999987653 111 12356778899999999999999999998
Q ss_pred HH-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CC-CHHHHHHHHHHHHhcCC---HHHHHHHHH
Q 008454 395 LR-----NGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSL---VP-NASTYSALITGQCVRKN---SERAFQLYK 462 (565)
Q Consensus 395 ~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p-~~~~~~~li~~~~~~~~---~~~A~~~~~ 462 (565)
.+ .... ...++..+...|.+.|++++|...+++..+... .+ ....+..+...+...++ +++|+..++
T Consensus 249 l~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 249 AKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 87 4433 377889999999999999999999999876321 12 23356666667777888 777777777
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 463 SMIRSGCRP-NKHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 463 ~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
+. +..+ ....+..+...|...|++++|...+++..+
T Consensus 328 ~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 328 KK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 63 2222 235667888999999999999999998865
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.1e-09 Score=105.69 Aligned_cols=199 Identities=13% Similarity=0.030 Sum_probs=100.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHHHH
Q 008454 303 TLISGHCNKGLLSLAMKFKNLMEKN----GIQ--P-NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVS----PNVVTY 371 (565)
Q Consensus 303 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~ 371 (565)
.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... .....+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 3444455555555555555544321 111 1 1233444455555566666666666555432111 012344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHH
Q 008454 372 NTLINGYGQVGNSEMGASLYEEMLRNGIKV--DILTYN----ALILGLCKEGKTKKAAYLVKDLDKNSLVP---NASTYS 442 (565)
Q Consensus 372 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~ 442 (565)
..+...+...|++++|...+++.......+ ...... ..+..+...|++++|...+++.......+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 455555566666666666666554321111 111111 22233556677777766666655432211 122445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 443 ALITGQCVRKNSERAFQLYKSMIRS----GCRPNK-HIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 443 ~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
.+...+...|++++|...++++... |..++. .++..+..++...|+.++|...+++...
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5666667777777777777766542 211122 2455556667777788777777777654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-09 Score=106.46 Aligned_cols=290 Identities=11% Similarity=-0.029 Sum_probs=196.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHHHHHHH
Q 008454 269 VMHAFCKLGIIERAVEVFKNMESMGFIPSV----TTYNTLISGHCNKGLLSLAMKFKNLMEKN----GIQ-PNVITFNTL 339 (565)
Q Consensus 269 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~l 339 (565)
....+...|++++|...+++........+. ..++.+...+...|++++|...+++.... |.. ....++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 334455677788887777776654322222 24555667777888888888888776542 211 012345667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----CCHHHHHH
Q 008454 340 IFGFCKKGKLHEANRIFSEMKAT----NVS--P-NVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIK----VDILTYNA 408 (565)
Q Consensus 340 i~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~ 408 (565)
...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... ....++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 78899999999999999987653 221 2 2345667888899999999999999998764221 12467888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHH
Q 008454 409 LILGLCKEGKTKKAAYLVKDLDKNSLVPN--ASTYS----ALITGQCVRKNSERAFQLYKSMIRSGCRP---NKHIFEML 479 (565)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~----~li~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~l 479 (565)
+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ....+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 89999999999999999998865311111 11111 23344778999999999999987643211 13356777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC----CCHhhH
Q 008454 480 MSTFCQNEDFDRAAEVLLEMLEK----CMAPDS-IILSELYSGLHHCGKDELAMKLFRKMEIR----GLL----PKGFDK 546 (565)
Q Consensus 480 i~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~----p~~~~~ 546 (565)
...+...|++++|...++++.+. +..++. ..+..+..++...|+.++|...+++..+. |.. ......
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~g~~~ 339 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 339 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHccHHH
Confidence 88899999999999999988653 222222 36667788899999999999999887543 322 123344
Q ss_pred HHHHhhcccCCC
Q 008454 547 LRTINCAPENGE 558 (565)
Q Consensus 547 ~~ll~~~~~~g~ 558 (565)
..++..+...+.
T Consensus 340 ~~ll~~~~~~~~ 351 (373)
T 1hz4_A 340 AQQLRQLIQLNT 351 (373)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHhCCC
Confidence 555555555444
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.27 E-value=6.5e-10 Score=96.84 Aligned_cols=161 Identities=14% Similarity=0.090 Sum_probs=85.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008454 372 NTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVR 451 (565)
Q Consensus 372 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 451 (565)
..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+... .+...+..+...+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHh
Confidence 3344444444555555554444443321 2344455555555555555555555555544322 1444555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 452 KNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLF 531 (565)
Q Consensus 452 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 531 (565)
|++++|.+.++++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.+
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666665555542 3445555555666666666666666666665542 224555666666666666666666666
Q ss_pred HHHHH
Q 008454 532 RKMEI 536 (565)
Q Consensus 532 ~~m~~ 536 (565)
++..+
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.27 E-value=7.4e-10 Score=96.48 Aligned_cols=165 Identities=14% Similarity=0.091 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008454 334 ITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGL 413 (565)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 413 (565)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 344555556666666666666666655442 33455566666666666666666666666665432 2556666666667
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 414 CKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAA 493 (565)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 493 (565)
...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777776665432 255666667777777777777777777776653 445666777777777777777777
Q ss_pred HHHHHHHHc
Q 008454 494 EVLLEMLEK 502 (565)
Q Consensus 494 ~~~~~~~~~ 502 (565)
..++++.+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 777776553
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-10 Score=120.98 Aligned_cols=169 Identities=11% Similarity=0.053 Sum_probs=149.9
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNM 268 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 268 (565)
+|.++.+|+.|...|.+.|++++|++.|++..+.... +..+|+.+..+|.+.|++++|+..|++..+.. +-+...|+.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 5667889999999999999999999999999987644 68999999999999999999999999998864 236889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 269 VMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGK 348 (565)
Q Consensus 269 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 348 (565)
+..++.+.|++++|++.|++..+.... +...|+.+..+|.+.|++++|++.+++..+... -+...+..+..++...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhccc
Confidence 999999999999999999999886533 688999999999999999999999999988643 368889999999999999
Q ss_pred HHHHHHHHHHHHh
Q 008454 349 LHEANRIFSEMKA 361 (565)
Q Consensus 349 ~~~A~~~~~~m~~ 361 (565)
+++|.+.++++.+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=5.6e-10 Score=118.19 Aligned_cols=165 Identities=15% Similarity=0.063 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 333 VITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILG 412 (565)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 412 (565)
..+|+.+...|.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|+..|++.++.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4555666666666666666666666655542 234455666666666666666666666666554322 45566666666
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 413 LCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRA 492 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 492 (565)
|.+.|++++|++.|++..+.+.. +...|+.+...|...|++++|++.|+++++.. +-+...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 66666666666666666554332 45566666666666666666666666666653 33455666666666666666666
Q ss_pred HHHHHHHHH
Q 008454 493 AEVLLEMLE 501 (565)
Q Consensus 493 ~~~~~~~~~ 501 (565)
.+.++++++
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.6e-09 Score=95.32 Aligned_cols=133 Identities=14% Similarity=-0.013 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008454 297 SVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLIN 376 (565)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 376 (565)
|...+......+...|++++|...|++..+....++...+..+..++...|++++|++.+++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 3455555555566666666666666665554332445555555555666666666666666555542 223445555555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 377 GYGQVGNSEMGASLYEEMLRNGIKVDI-------LTYNALILGLCKEGKTKKAAYLVKDLDK 431 (565)
Q Consensus 377 ~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~ 431 (565)
.+...|++++|...+++..+.... +. ..|..+...+...|++++|...|+++.+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 555666666666666655554221 22 2344455555555555555555555544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.1e-09 Score=95.01 Aligned_cols=202 Identities=12% Similarity=-0.018 Sum_probs=156.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 331 PNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALI 410 (565)
Q Consensus 331 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 410 (565)
.|+..+......+.+.|++++|++.|++..+....++...+..+..++...|++++|...+++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3667888889999999999999999999988753367788888999999999999999999999987544 677899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 008454 411 LGLCKEGKTKKAAYLVKDLDKNSLVPNA-------STYSALITGQCVRKNSERAFQLYKSMIRSGCRPN---KHIFEMLM 480 (565)
Q Consensus 411 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li 480 (565)
..|...|++++|...+++..+.... +. ..|..+...+...|++++|++.|+++++. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999999886433 44 45788888889999999999999999976 454 46677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 008454 481 STFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDK 546 (565)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 546 (565)
.++... +..+++++...+ ..+...|.... ....|.+++|...+++..+.. |+....
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~--p~~~~~ 216 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS--PNRTEI 216 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CCCHHH
Confidence 777544 444556665543 22344444443 344567899999999998763 554433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.15 E-value=5e-10 Score=104.95 Aligned_cols=228 Identities=17% Similarity=0.088 Sum_probs=157.5
Q ss_pred HhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 008454 309 CNKGLLSLAMKFKNLMEKN-------GIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKAT------NV-SPNVVTYNTL 374 (565)
Q Consensus 309 ~~~g~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~l 374 (565)
...|++++|..++++..+. ..+....++..+...|...|++++|+..++++.+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4467777777777766542 22234677888999999999999999999998754 21 2235678889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-CHHH
Q 008454 375 INGYGQVGNSEMGASLYEEMLRN------G-IKVDILTYNALILGLCKEGKTKKAAYLVKDLDKN------SLVP-NAST 440 (565)
Q Consensus 375 i~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~ 440 (565)
...+...|++++|...++++.+. . ......++..+...|...|++++|...++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1224677888999999999999999999998764 1122 3457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCC
Q 008454 441 YSALITGQCVRKNSERAFQLYKSMIRS-------GCRPN-KHIFEMLMSTFCQNED------FDRAAEVLLEMLEKCMAP 506 (565)
Q Consensus 441 ~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p~-~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~~~~p 506 (565)
+..+...+...|++++|..+++++++. ...+. ...+..+.......+. +..+...++.... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999999864 11122 2233333333333222 2222222221111 1122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 507 DSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 507 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
...++..+...|...|++++|.+++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3457888999999999999999999987653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.13 E-value=6.5e-10 Score=104.20 Aligned_cols=227 Identities=17% Similarity=0.044 Sum_probs=157.7
Q ss_pred HcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CC-CCCHHHHHHHH
Q 008454 275 KLGIIERAVEVFKNMESM-------GFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKN------GI-QPNVITFNTLI 340 (565)
Q Consensus 275 ~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~~~~~~~~~li 340 (565)
..|++++|+..+++..+. .......++..+...|...|++++|...+++..+. +. +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 567777777777766542 22234677888999999999999999999998754 22 22456788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHH
Q 008454 341 FGFCKKGKLHEANRIFSEMKAT------N-VSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRN------GIKV-DILTY 406 (565)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~-~~~~~ 406 (565)
..|...|++++|.+.+++..+. . .+.....+..+...+...|++++|...++++.+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998764 1 1233567888999999999999999999998875 1122 35678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCC
Q 008454 407 NALILGLCKEGKTKKAAYLVKDLDKN-------SLVP-NASTYSALITGQCVRKN------SERAFQLYKSMIRSGCRPN 472 (565)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~p-~~~~~~~li~~~~~~~~------~~~A~~~~~~m~~~~~~p~ 472 (565)
..+...|...|++++|...++++.+. ...+ ....|..+...+...+. +..+...++..... .+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHH
Confidence 89999999999999999999998753 1111 12233333333332222 22333333222111 1223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 473 KHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
..++..+...+...|++++|..++++.++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457888999999999999999999988763
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.09 E-value=2.7e-08 Score=92.56 Aligned_cols=244 Identities=12% Similarity=0.011 Sum_probs=155.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGII 279 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 279 (565)
++-..-.|.+..++.-..++.. ......-..+.+++...|+++.. ..-.|....+..+...+ . ++
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~-~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-D-TK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-T-TT-
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-c-cc-
Confidence 4555667888888874433322 22334444456778877776642 12234444444444333 2 22
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008454 280 ERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGI-QPNVITFNTLIFGFCKKGKLHEANRIFSE 358 (565)
Q Consensus 280 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 358 (565)
|+..++++.+.+ .++..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677777776654 44566666777888888888888888888776653 12567777788888888888888888888
Q ss_pred HHhCCCCC-----CHHHHHHHHHHHH--hcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008454 359 MKATNVSP-----NVVTYNTLINGYG--QVG--NSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDL 429 (565)
Q Consensus 359 m~~~~~~~-----~~~~~~~li~~~~--~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 429 (565)
|.+. .| +..+...+..++. ..| +..+|..+|+++.+. .|+..+...++.++.+.|++++|...++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8775 44 2455555655533 223 788888888888665 244333344444778888888888888766
Q ss_pred HhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 430 DKNS---------LVPNASTYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 430 ~~~~---------~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
.+.. -.-+..++..+|......|+ +|.+++.++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 5421 01255566455555555665 777888888775
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-08 Score=95.38 Aligned_cols=68 Identities=18% Similarity=0.094 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 008454 208 KFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRN----RISPN-VYTLNMVMHAFCKLGIIERA 282 (565)
Q Consensus 208 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a 282 (565)
++++|.+.|++. ...|...|++++|...|++..+. |-.++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666655 23455566666666666665431 11111 34555566666666666666
Q ss_pred HHHHHHHH
Q 008454 283 VEVFKNME 290 (565)
Q Consensus 283 ~~~~~~m~ 290 (565)
+..+++..
T Consensus 97 ~~~~~~Al 104 (292)
T 1qqe_A 97 VDSLENAI 104 (292)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.03 E-value=4.6e-08 Score=90.97 Aligned_cols=179 Identities=9% Similarity=0.042 Sum_probs=84.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 352 ANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGI-KVDILTYNALILGLCKEGKTKKAAYLVKDLD 430 (565)
Q Consensus 352 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 430 (565)
|+..|++....+ .++...+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444455444433 23333444555555555555555555555544432 1234455555555555556666655555554
Q ss_pred hCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 431 KNSLVP-----NASTYSALITGQ--CVRK--NSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 431 ~~~~~p-----~~~~~~~li~~~--~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
+. .| +..+...|+.++ ...| ++++|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 23 123333333331 1122 555666666665443 34322223333355555666666666654433
Q ss_pred cC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 502 KC---------MAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 502 ~~---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
.. -+-+..++..+|......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 02234444344444444454 555555555443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2.8e-08 Score=81.09 Aligned_cols=130 Identities=15% Similarity=0.135 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFC 484 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (565)
.+..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3445555666666666666666666554322 45556666666666666666666666666553 344556666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 485 QNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 485 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
..|++++|.++++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6777777777776666542 224556666666777777777777777766543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-08 Score=94.46 Aligned_cols=205 Identities=15% Similarity=0.013 Sum_probs=126.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHH
Q 008454 313 LLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKAT----NVSPN-VVTYNTLINGYGQVGNSEMG 387 (565)
Q Consensus 313 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A 387 (565)
++++|...+++. ...|...|++++|.+.|++..+. |..++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666554 33455667777777777665442 21111 34666777777777777777
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHhcCCHHH
Q 008454 388 ASLYEEMLRN----GIKV-DILTYNALILGLCKE-GKTKKAAYLVKDLDKNSLVP-N----ASTYSALITGQCVRKNSER 456 (565)
Q Consensus 388 ~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p-~----~~~~~~li~~~~~~~~~~~ 456 (565)
...+++..+. |... -..+++.+...|... |++++|+..|++..+..... + ..+|..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 7777766543 1110 134677777778775 88888888888775531110 1 3457777888888888888
Q ss_pred HHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH--hcC
Q 008454 457 AFQLYKSMIRSGCRPNK------HIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDS------IILSELYSGLH--HCG 522 (565)
Q Consensus 457 A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~li~~~~--~~g 522 (565)
|+..|+++++....... ..|..+..++...|++++|...+++.++. .|+. ..+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 88888888875322111 14666777778888888888888887653 2221 13444555554 356
Q ss_pred CHHHHHHHHHHH
Q 008454 523 KDELAMKLFRKM 534 (565)
Q Consensus 523 ~~~~A~~~~~~m 534 (565)
++++|+..|+++
T Consensus 255 ~~~~A~~~~~~~ 266 (292)
T 1qqe_A 255 QLSEHCKEFDNF 266 (292)
T ss_dssp THHHHHHHHTTS
T ss_pred HHHHHHHHhccC
Confidence 677777777665
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.98 E-value=4.7e-06 Score=84.46 Aligned_cols=345 Identities=12% Similarity=0.012 Sum_probs=197.9
Q ss_pred CCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCC-hHHHHHHHHHHHHC-CCCc-CHHH
Q 008454 154 RKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKK-FRNATDTFCQMRDY-GFLP-IIES 230 (565)
Q Consensus 154 ~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~-~~~p-~~~~ 230 (565)
++++.+..+|++.+.. + |+..+|...+....+.++ .+....+|+..... |..+ +...
T Consensus 28 ~~~e~~~~iferal~~-------------------~-ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~i 87 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK-------------------S-YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGL 87 (493)
T ss_dssp TCHHHHHHHHHHHSTT-------------------C-CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHH
T ss_pred CCHHHHHHHHHHHhcc-------------------C-CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHH
Confidence 5566666666666654 2 144455555544444442 34455556655442 3222 4556
Q ss_pred HHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHHhCC
Q 008454 231 CNKFLSSLLD----SERVDIALGFYKEMRRNRISPNVYTLNMVMHAFC-------------KLGIIERAVEVFKNMESMG 293 (565)
Q Consensus 231 ~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-------------~~g~~~~a~~~~~~m~~~g 293 (565)
|...+..+.. .++.+.+..+|++........-...|......-. ..+.+..|..+++++...-
T Consensus 88 W~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~ 167 (493)
T 2uy1_A 88 YKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLI 167 (493)
T ss_dssp HHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 6665555432 2445566666666655211101112221111100 1122333444444443210
Q ss_pred CCCCHHHHHHHHHHHHhcC--C-----hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008454 294 FIPSVTTYNTLISGHCNKG--L-----LSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSP 366 (565)
Q Consensus 294 ~~p~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 366 (565)
...+...|...+..-...+ - .+.+..+++++.... +-+...|...+..+.+.|+.++|..++++.... +.
T Consensus 168 ~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~ 244 (493)
T 2uy1_A 168 RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SD 244 (493)
T ss_dssp HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CC
T ss_pred hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC
Confidence 0013445655554432221 1 244667888888753 446788888888889999999999999999887 33
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008454 367 NVVTYNTLINGYGQVGNSEMGASLYEEMLRNG---------I---KVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSL 434 (565)
Q Consensus 367 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 434 (565)
+...+. .|....+.++. ++.+.+.- . ......|...+..+.+.+..+.|..+|+.+ .. .
T Consensus 245 ~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~ 315 (493)
T 2uy1_A 245 GMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E 315 (493)
T ss_dssp SSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S
T ss_pred cHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C
Confidence 333322 22222222222 22222210 0 111345677777777788999999999999 32 1
Q ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 008454 435 VPNASTYSALITGQCV-RKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSE 513 (565)
Q Consensus 435 ~p~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 513 (565)
..+...|......-.. .++.+.|..+|+..++.- +-+...+...++...+.|+.+.|..+|+++. .....|..
T Consensus 316 ~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~ 389 (493)
T 2uy1_A 316 GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDS 389 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHH
Confidence 2344555433322222 346999999999999863 3345556667777788999999999999873 25778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 008454 514 LYSGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 514 li~~~~~~g~~~~A~~~~~~m~~ 536 (565)
.+..-...|+.+.+..+++++.+
T Consensus 390 ~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 390 MIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888999999999998764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4.6e-08 Score=79.75 Aligned_cols=127 Identities=17% Similarity=0.186 Sum_probs=62.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008454 372 NTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVR 451 (565)
Q Consensus 372 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 451 (565)
..+...+...|++++|..+++++.+.+. .+...+..+...+...|++++|...++++.+.+.. +...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHh
Confidence 3344444444444444444444444321 13444444445555555555555555554443221 344455555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 452 KNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 452 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555555442 23444555555555555666666555555544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.97 E-value=4e-08 Score=91.14 Aligned_cols=184 Identities=13% Similarity=0.057 Sum_probs=92.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHH
Q 008454 297 SVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPN---VITFNTLIFGFCKKGKLHEANRIFSEMKATNV--SPNVVTY 371 (565)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~ 371 (565)
+...+..+...+.+.|++++|...|+++.+.... + ...+..+..+|.+.|++++|+..|+.+.+... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3444445555555666666666666665554211 2 34455555556666666666666665555310 1112334
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008454 372 NTLINGYGQ--------VGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSA 443 (565)
Q Consensus 372 ~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 443 (565)
..+..++.. .|++++|...|+++.+.... +......+.. +..+... -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 444555555 55555555555555543211 1111111100 0000000 0011345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHc
Q 008454 444 LITGQCVRKNSERAFQLYKSMIRSGCRPN----KHIFEMLMSTFCQN----------EDFDRAAEVLLEMLEK 502 (565)
Q Consensus 444 li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~ 502 (565)
+...|...|++++|+..|+++++.. |+ ...+..+..++... |++++|...++++++.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 5666677777777777777777652 32 34555666666654 6777777777777664
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.97 E-value=6.9e-07 Score=83.91 Aligned_cols=226 Identities=10% Similarity=-0.046 Sum_probs=154.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----H
Q 008454 201 KTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSE--RVDIALGFYKEMRRNRISPNVYTLNMVMHAF----C 274 (565)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~----~ 274 (565)
....+....++|+++++.+...+.. +..+|+.-...+...+ ++++++++++.+.....+ +..+|+.--..+ .
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHH
Confidence 3333444557899999999887754 6788888888888888 899999999998876433 455565444444 4
Q ss_pred Hc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-
Q 008454 275 KL---GIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLS--LAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGK- 348 (565)
Q Consensus 275 ~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~- 348 (565)
.. +++++++++++++.+...+ +-.+|+.-.-.+.+.|.++ ++++.++++.+.... |..+|+.....+.+.|.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGG
T ss_pred hccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 44 6788888888888876544 7777877777777778777 888888888876543 77777776666666665
Q ss_pred -----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHH
Q 008454 349 -----LHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEM-GASLYEEMLRNG--IKVDILTYNALILGLCKEGKTK 420 (565)
Q Consensus 349 -----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~ 420 (565)
++++++.++.+.... +-|...|+.+...+.+.|+... +..+..++.+.+ -..+...+..++..|.+.|+.+
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred chhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 777777777776654 4566677766666666665333 444544444322 1235566666777777777777
Q ss_pred HHHHHHHHHHh
Q 008454 421 KAAYLVKDLDK 431 (565)
Q Consensus 421 ~A~~~~~~~~~ 431 (565)
+|.++++.+.+
T Consensus 276 ~A~~~~~~l~~ 286 (306)
T 3dra_A 276 ESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777777664
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.6e-08 Score=92.44 Aligned_cols=213 Identities=10% Similarity=-0.025 Sum_probs=133.3
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC-CCC-H
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPI---IESCNKFLSSLLDSERVDIALGFYKEMRRNRI-SPN-V 263 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~p~-~ 263 (565)
.+.++..+..+...+.+.|++++|+..|+++.+.... + ..++..+..++.+.|++++|+..|+...+... .+. .
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 3456777888889999999999999999999886533 3 67888899999999999999999999987532 122 4
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 008454 264 YTLNMVMHAFCK--------LGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVIT 335 (565)
Q Consensus 264 ~~~~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 335 (565)
..+..+..++.. .|++++|+..|+++.+.... +......+ ..+..+... -...
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~--------------~~~~~~~~~----~~~~ 150 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDAT--------------QKIRELRAK----LARK 150 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHH--------------HHHHHHHHH----HHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHH--------------HHHHHHHHH----HHHH
Confidence 567777788888 89999999999998875322 22222111 001111000 0112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHCCCCCC-
Q 008454 336 FNTLIFGFCKKGKLHEANRIFSEMKATNVS--PNVVTYNTLINGYGQV----------GNSEMGASLYEEMLRNGIKVD- 402 (565)
Q Consensus 336 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~- 402 (565)
+..+...|.+.|++++|+..|+.+.+.... .....+..+..+|... |++++|...|+++.+......
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 344556666677777777777766654211 1233455555666544 666777777777666432211
Q ss_pred -HHHHHHHHHHHHHcCCHHH
Q 008454 403 -ILTYNALILGLCKEGKTKK 421 (565)
Q Consensus 403 -~~~~~~li~~~~~~g~~~~ 421 (565)
......+...+...+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 2334444444444444443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.4e-07 Score=83.69 Aligned_cols=221 Identities=8% Similarity=-0.040 Sum_probs=176.4
Q ss_pred CCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCcCHHHH
Q 008454 154 RKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRK--KFRNATDTFCQMRDYGFLPIIESC 231 (565)
Q Consensus 154 ~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~ 231 (565)
...++|+.+.+.++.. .|....+|+.-...+...| +++++++.++.+...+.+ +..+|
T Consensus 47 e~s~~aL~~t~~~L~~-------------------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW 106 (306)
T 3dra_A 47 EYSERALHITELGINE-------------------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIW 106 (306)
T ss_dssp CCSHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHH
T ss_pred CCCHHHHHHHHHHHHH-------------------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHH
Confidence 3445788888888776 4556777888888888888 999999999999987765 67777
Q ss_pred HHHHHHH----HcC---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCCHHHHH
Q 008454 232 NKFLSSL----LDS---ERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIE--RAVEVFKNMESMGFIPSVTTYN 302 (565)
Q Consensus 232 ~~ll~~~----~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~~~~ 302 (565)
+.-...+ ... +++++++++++.+.+.. +-|-.+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+
T Consensus 107 ~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~ 184 (306)
T 3dra_A 107 NYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWS 184 (306)
T ss_dssp HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHH
Confidence 7766666 555 78999999999998865 348888888888888889888 999999999987655 888888
Q ss_pred HHHHHHHhcCC------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhCC--CCCCHHHHHH
Q 008454 303 TLISGHCNKGL------LSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHE-ANRIFSEMKATN--VSPNVVTYNT 373 (565)
Q Consensus 303 ~li~~~~~~g~------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~~~~~~~~~ 373 (565)
.-...+.+.|. ++++++.++.+..... -|...|+-+-..+.+.|+..+ +....+++.+.+ -..+...+..
T Consensus 185 ~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~ 263 (306)
T 3dra_A 185 HRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALET 263 (306)
T ss_dssp HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHH
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHH
Confidence 87777777776 8899999999888754 488999988888888887444 555666555432 2457788889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 008454 374 LINGYGQVGNSEMGASLYEEMLRN 397 (565)
Q Consensus 374 li~~~~~~g~~~~A~~~~~~m~~~ 397 (565)
+...+.+.|+.++|.++++.+.+.
T Consensus 264 la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 264 LAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHccCCHHHHHHHHHHHHhc
Confidence 999999999999999999999874
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.94 E-value=5.6e-08 Score=86.70 Aligned_cols=130 Identities=13% Similarity=0.060 Sum_probs=63.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008454 374 LINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKN 453 (565)
Q Consensus 374 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 453 (565)
+..++.+.|++++|...|++..+.... +...+..+..++...|++++|...|+++.+.... +...|..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 555555666666666666665554322 4555555666666666666666666665554332 44555555555544332
Q ss_pred --HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 008454 454 --SERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSI 509 (565)
Q Consensus 454 --~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 509 (565)
.+.+...++.... ..|....+.....++...|++++|...|+++++. .|+..
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~ 191 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTE 191 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHH
Confidence 2233334433321 1111222223333444556666666666666553 34443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-07 Score=83.74 Aligned_cols=163 Identities=7% Similarity=-0.114 Sum_probs=112.2
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC----ChHHHHHHHHHHHHCCCCCCHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSE----RVDIALGFYKEMRRNRISPNVYTLN 267 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~----~~~~A~~~~~~m~~~~~~p~~~~~~ 267 (565)
++.++..|...|...+++++|++.|++..+.| +..++..+...|.. + ++++|...|+...+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 66777778888888888888888888887765 56777777777776 5 7888888888877654 566666
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 268 MVMHAFCK----LGIIERAVEVFKNMESMGFI-PSVTTYNTLISGHCN----KGLLSLAMKFKNLMEKNGIQPNVITFNT 338 (565)
Q Consensus 268 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 338 (565)
.+...|.. .+++++|++.|++..+.|.. -+...+..|...|.. .+++++|..++++..+.+ .+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHH
Confidence 66666665 67777888777777766521 015666667677766 667777777777776651 23445555
Q ss_pred HHHHHHHc-C-----CHHHHHHHHHHHHhCC
Q 008454 339 LIFGFCKK-G-----KLHEANRIFSEMKATN 363 (565)
Q Consensus 339 li~~~~~~-g-----~~~~A~~~~~~m~~~~ 363 (565)
|...|... | ++++|...|+...+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66665543 2 6777777777766655
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.9e-08 Score=87.08 Aligned_cols=165 Identities=7% Similarity=-0.030 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHH----------------HHHH
Q 008454 139 TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDL----------------LFKT 202 (565)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------li~~ 202 (565)
+.+.+......+...|++++|...+++.++.. |.++..|.. +..+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------------------p~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-------------------IDRTEMYYWTNVDKNSEISSKLATELALA 63 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------HHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------------CCChHHHHHhhhcchhhhhHHHHHHHHHH
Confidence 34455566677788899999999999888762 223333433 6666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HH
Q 008454 203 YAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGI--IE 280 (565)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~ 280 (565)
|.+.|++++|+..|++..+.+.. +...+..+...+...|++++|+..|++..+.. +-+...+..+...|...|+ .+
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHH
Confidence 66666666666666666665433 55666666666666666666666666665543 2244555555555544332 22
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008454 281 RAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEK 326 (565)
Q Consensus 281 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 326 (565)
.+...++.... ..|....+..+..++...|++++|...|++..+
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33333333321 111112222233334445555555555555554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-08 Score=106.26 Aligned_cols=153 Identities=14% Similarity=-0.067 Sum_probs=73.5
Q ss_pred HhcCChHHHHHHHHHHH--------HCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 204 AHRKKFRNATDTFCQMR--------DYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK 275 (565)
Q Consensus 204 ~~~g~~~~A~~~~~~~~--------~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 275 (565)
...|++++|++.|++.. +... .+...+..+...+...|++++|++.|++..+.. +-+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44455555555555554 2221 134445555555555555555555555554432 1234445555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008454 276 LGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRI 355 (565)
Q Consensus 276 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 355 (565)
.|++++|++.|++..+.... +...|..+..++.+.|++++ .+.+++..+... -+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555443221 34444445555555555555 555555444321 1344445555555555555555555
Q ss_pred HHHHHh
Q 008454 356 FSEMKA 361 (565)
Q Consensus 356 ~~~m~~ 361 (565)
|++..+
T Consensus 557 ~~~al~ 562 (681)
T 2pzi_A 557 LDEVPP 562 (681)
T ss_dssp HHTSCT
T ss_pred HHhhcc
Confidence 554443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-08 Score=107.11 Aligned_cols=173 Identities=9% Similarity=-0.064 Sum_probs=107.8
Q ss_pred HHcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 344 CKKGKLHEANRIFSEMK--------ATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCK 415 (565)
Q Consensus 344 ~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 415 (565)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...|+++.+.+.. +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 55667777777777666 221 334456666666777777777777777776665332 55666667777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008454 416 EGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEV 495 (565)
Q Consensus 416 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 495 (565)
.|++++|...|+++.+.... +...|..+..++.+.|++++ ++.|+++++.. +-+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777776665433 45566666677777777777 77777776653 44556666677777777777777777
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 008454 496 LLEMLEKCMAPD-SIILSELYSGLHHCGK 523 (565)
Q Consensus 496 ~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 523 (565)
|+++.+. .|+ ...+..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 7766653 333 3455555555555443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.88 E-value=2e-07 Score=83.35 Aligned_cols=176 Identities=11% Similarity=-0.019 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHH
Q 008454 211 NATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG----IIERAVEVF 286 (565)
Q Consensus 211 ~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~a~~~~ 286 (565)
+|++.|++..+.| +..++..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4555666666543 55666666666666666777777776666554 45555555555555 4 666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 008454 287 KNMESMGFIPSVTTYNTLISGHCN----KGLLSLAMKFKNLMEKNGIQ-PNVITFNTLIFGFCK----KGKLHEANRIFS 357 (565)
Q Consensus 287 ~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~ 357 (565)
++..+.| +...+..|...|.. .+++++|.+++++..+.|.. .+...+..|...|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6665543 45555555555555 55666666666666655421 014555555555555 556666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHCC
Q 008454 358 EMKATNVSPNVVTYNTLINGYGQV-G-----NSEMGASLYEEMLRNG 398 (565)
Q Consensus 358 ~m~~~~~~~~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 398 (565)
+..+. ..+...+..|...|... | +.++|...|+...+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66554 12333444454444432 2 5566666666655544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.85 E-value=4e-08 Score=85.03 Aligned_cols=159 Identities=11% Similarity=-0.037 Sum_probs=74.2
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 008454 144 SIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYG 223 (565)
Q Consensus 144 ~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 223 (565)
......+...|++++|...+++.++. .|.++.++..+...+...|++++|+..|+++....
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~-------------------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~ 70 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDE-------------------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY 70 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHH-------------------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH-------------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc
Confidence 34445555566666666666555544 33445555556666666666666666666554433
Q ss_pred CCcCHHHHHHHHHH-HHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHH
Q 008454 224 FLPIIESCNKFLSS-LLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIP-SVTTY 301 (565)
Q Consensus 224 ~~p~~~~~~~ll~~-~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~ 301 (565)
. +...+..+... +...+....|+..+++..+.. +-+...+..+...+...|++++|...|+++.+....+ +...+
T Consensus 71 p--~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~ 147 (176)
T 2r5s_A 71 Q--DNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVK 147 (176)
T ss_dssp C--CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHH
T ss_pred C--ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHH
Confidence 2 32222221111 111112223444454444432 1134445555555555555555555555555443221 23344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 008454 302 NTLISGHCNKGLLSLAMKFKNLM 324 (565)
Q Consensus 302 ~~li~~~~~~g~~~~a~~~~~~m 324 (565)
..+...+...|+.++|...+++.
T Consensus 148 ~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 148 KTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcHHHHHHHH
Confidence 44555555555555555554443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.8e-08 Score=85.15 Aligned_cols=161 Identities=7% Similarity=-0.047 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHA-F 273 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~ 273 (565)
.+..+...+.+.|++++|+..|++..+.... +...+..+...+...|++++|+..|+...+.. |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 3445667778888888888888887665432 56778888888888888888888887765542 244333222111 1
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 008454 274 CKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQP-NVITFNTLIFGFCKKGKLHEA 352 (565)
Q Consensus 274 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A 352 (565)
...++..+|+..+++..+.... +...+..+...+...|++++|...++++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1222223345555555543221 35555556666666666666666666665543221 234555555666666666666
Q ss_pred HHHHHHH
Q 008454 353 NRIFSEM 359 (565)
Q Consensus 353 ~~~~~~m 359 (565)
...|++.
T Consensus 164 ~~~y~~a 170 (176)
T 2r5s_A 164 ASKYRRQ 170 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.81 E-value=5.9e-07 Score=81.06 Aligned_cols=203 Identities=10% Similarity=0.002 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHH
Q 008454 298 VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQ-P-NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNV----VTY 371 (565)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~ 371 (565)
...+..+...+.+.|++++|...|+++.+.... + ....+..+..+|.+.|++++|+..|+++.+.. |+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 344555566677777777777777777664221 1 13456666677777777777777777776642 221 133
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008454 372 NTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVR 451 (565)
Q Consensus 372 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 451 (565)
..+..++...|.. .+ ..|..+...+...|+.++|...|+++.+.... +...+......
T Consensus 82 ~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l---- 139 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL---- 139 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----
T ss_pred HHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----
Confidence 3334444332210 00 01122233334456777777777777765322 11122111100
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 008454 452 KNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPD--SIILSELYSGLHHCGKDELAMK 529 (565)
Q Consensus 452 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~ 529 (565)
..+...+. .....+...+.+.|++++|...|+++++...... ...+..+..++.+.|+.++|.+
T Consensus 140 ------~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 140 ------VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp ------HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 00000000 1123455677788888888888888887532211 2467778888888888888888
Q ss_pred HHHHHHHCC
Q 008454 530 LFRKMEIRG 538 (565)
Q Consensus 530 ~~~~m~~~g 538 (565)
.++.+...+
T Consensus 206 ~~~~l~~~~ 214 (225)
T 2yhc_A 206 VAKIIAANS 214 (225)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhhC
Confidence 888887664
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-07 Score=88.28 Aligned_cols=164 Identities=10% Similarity=-0.017 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 139 TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (565)
+.+.+..+...+...|++++|...++++++. .|.++.++..+...|.+.|++++|+..+++
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-------------------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~ 176 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL-------------------SNQNGEIGLLLAETLIALNRSEDAEAVLXT 176 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh-------------------CCcchhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4455556666666666666666666666665 344556666666666666666666666666
Q ss_pred HHHCCCCcCHHHHH-HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C
Q 008454 219 MRDYGFLPIIESCN-KFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFI-P 296 (565)
Q Consensus 219 ~~~~~~~p~~~~~~-~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p 296 (565)
+.... |+..... .....+...++.+.|...|++..+.. +.+...+..+...+...|++++|++.|.++.+.... .
T Consensus 177 ~~~~~--p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~ 253 (287)
T 3qou_A 177 IPLQD--QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA 253 (287)
T ss_dssp SCGGG--CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG
T ss_pred Cchhh--cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 65543 3332222 22223445555555666666655543 234555666666666666666666666666554321 1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008454 297 SVTTYNTLISGHCNKGLLSLAMKFKNLM 324 (565)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~a~~~~~~m 324 (565)
+...+..++..+...|+.++|...+++.
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 1445555666666666666665555543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-07 Score=97.55 Aligned_cols=155 Identities=10% Similarity=-0.032 Sum_probs=117.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008454 346 KGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYL 425 (565)
Q Consensus 346 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 425 (565)
.|++++|++.+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999887763 445788888999999999999999999999987543 688899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 008454 426 VKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQN---EDFDRAAEVLLEMLEK 502 (565)
Q Consensus 426 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~ 502 (565)
+++..+.... +...+..+...+...|++++|.+.++++++.. +.+...+..+...+... |++++|.+.++++++.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998886543 67889999999999999999999999999874 45678888899999999 9999999999999887
Q ss_pred CC
Q 008454 503 CM 504 (565)
Q Consensus 503 ~~ 504 (565)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 43
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.80 E-value=5.8e-07 Score=81.14 Aligned_cols=192 Identities=9% Similarity=-0.025 Sum_probs=111.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHH
Q 008454 332 NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVS-P-NVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDI--LTYN 407 (565)
Q Consensus 332 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~ 407 (565)
+...+..+...+.+.|++++|+..|+++.+.... + ....+..+..++.+.|++++|...|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445556667777888888888888887765211 1 1345667777888888888888888887765332111 2444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc
Q 008454 408 ALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNK-HIFEMLMSTFCQN 486 (565)
Q Consensus 408 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~ 486 (565)
.+..++.+.|.. .+. .|..+...+...|++++|+..|+++++. .|+. ..+......
T Consensus 83 ~~g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l---- 139 (225)
T 2yhc_A 83 MRGLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL---- 139 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----
T ss_pred HHHHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----
Confidence 444455443321 111 1222333445567889999999999876 3432 222221110
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHhhcccCCCccCC
Q 008454 487 EDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKG----FDKLRTINCAPENGEKESG 562 (565)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~~ 562 (565)
..+...+. .....+...|.+.|++++|...|+++.+.. |+. ..+..+..++.+.|+.+.+
T Consensus 140 ------~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 140 ------VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp ------HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 00111110 112356778899999999999999998763 332 4677777888888887653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.4e-07 Score=88.72 Aligned_cols=161 Identities=11% Similarity=0.037 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH
Q 008454 370 TYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYS-ALITGQ 448 (565)
Q Consensus 370 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~li~~~ 448 (565)
.+..+...+...|++++|...|++..+.... +...+..+...+.+.|++++|...++++.... |+..... .....+
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~l 195 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHHH
Confidence 3344444445555555555555555443222 34445555555555555555555555544332 2222111 111223
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 008454 449 CVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAP-DSIILSELYSGLHHCGKDELA 527 (565)
Q Consensus 449 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 527 (565)
...++.++|+..++++++.. +.+...+..+...+...|++++|...++++++..... +...+..++..|...|+.++|
T Consensus 196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence 34444455555555555543 3345555555555555666666666665555542211 134555555555556665555
Q ss_pred HHHHHHH
Q 008454 528 MKLFRKM 534 (565)
Q Consensus 528 ~~~~~~m 534 (565)
...|++.
T Consensus 275 ~~~~r~a 281 (287)
T 3qou_A 275 ASXYRRQ 281 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.79 E-value=9.1e-08 Score=91.10 Aligned_cols=157 Identities=9% Similarity=-0.053 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----CHH
Q 008454 370 TYNTLINGYGQVGNSEMGASLYEEMLRN----GIKV-DILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVP-----NAS 439 (565)
Q Consensus 370 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~ 439 (565)
+|..+...|...|++++|...|++..+. |... -..++..+...|.. |++++|+..+++..+..... ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 4444555555555666655555554432 1100 12345555566655 66666666666554321000 133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C---HHH
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRS----GCRPN-KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAP-D---SII 510 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~---~~~ 510 (565)
++..+...+...|++++|+..|++.++. +..+. ...+..++.++...|++++|...|++.+ ..... + ...
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~ 235 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAA 235 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHH
Confidence 5666666677777777777777766653 11111 1244455555666677777777777766 32110 1 123
Q ss_pred HHHHHHHHHhcCCHHHHHH
Q 008454 511 LSELYSGLHHCGKDELAMK 529 (565)
Q Consensus 511 ~~~li~~~~~~g~~~~A~~ 529 (565)
...++.++ ..|+.+.+.+
T Consensus 236 l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 236 LEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHH
Confidence 34444444 4566655555
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.5e-08 Score=83.73 Aligned_cols=141 Identities=9% Similarity=-0.014 Sum_probs=71.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 378 YGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERA 457 (565)
Q Consensus 378 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A 457 (565)
+...|++++|+..+........ -+...+..+...|.+.|++++|...|++..+.... +...|..+..+|...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHH
Confidence 3344555555555555443211 02223344555555666666666666655554332 455555666666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008454 458 FQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEV-LLEMLEKCMAPDSIILSELYSGLHHCG 522 (565)
Q Consensus 458 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~p~~~~~~~li~~~~~~g 522 (565)
+..|+++++.. +-+..++..+...+.+.|++++|.+. ++++++.. +-+..+|......+...|
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 66666665543 33455555555566666665544333 35555532 123444554444444444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2e-07 Score=97.06 Aligned_cols=164 Identities=9% Similarity=-0.072 Sum_probs=124.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008454 311 KGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASL 390 (565)
Q Consensus 311 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 390 (565)
.|++++|.+.+++..+.. +.+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478999999999988764 2367889999999999999999999999998874 45678899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 008454 391 YEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVR---KNSERAFQLYKSMIRS 467 (565)
Q Consensus 391 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~ 467 (565)
+++..+.... +...+..+..+|.+.|++++|.+.+++..+.... +...+..+...+... |+.++|.+.++++++.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999987543 6889999999999999999999999999886543 678899999999999 9999999999999987
Q ss_pred CCCCCHHHHHHH
Q 008454 468 GCRPNKHIFEML 479 (565)
Q Consensus 468 ~~~p~~~~~~~l 479 (565)
+ +.+...|..+
T Consensus 158 ~-p~~~~~~~~l 168 (568)
T 2vsy_A 158 G-VGAVEPFAFL 168 (568)
T ss_dssp T-CCCSCHHHHT
T ss_pred C-CcccChHHHh
Confidence 5 3333444433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.7e-08 Score=83.53 Aligned_cols=85 Identities=13% Similarity=0.037 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFC 274 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 274 (565)
.+..+...|.+.|++++|++.|++..+.... +..+|..+...+...|++++|+..|+...+... -+...|..+...|.
T Consensus 33 ~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~ 110 (150)
T 4ga2_A 33 KGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELNP-TQKDLVLKIAELLC 110 (150)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 3444445555555555555555555444322 444455555555555555555555554444321 13344444444444
Q ss_pred HcCCHHH
Q 008454 275 KLGIIER 281 (565)
Q Consensus 275 ~~g~~~~ 281 (565)
+.|++++
T Consensus 111 ~~~~~~~ 117 (150)
T 4ga2_A 111 KNDVTDG 117 (150)
T ss_dssp HHCSSSS
T ss_pred HcCChHH
Confidence 4444443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-07 Score=89.48 Aligned_cols=198 Identities=10% Similarity=-0.004 Sum_probs=105.0
Q ss_pred cCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 206 RKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLD-SERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVE 284 (565)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 284 (565)
.|++++|.+++++..+.... . +.+ .++++.|...|... ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 46777888888777653211 1 112 46677777776654 235666778888877
Q ss_pred HHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 008454 285 VFKNMESM----GFIP-SVTTYNTLISGHCNKGLLSLAMKFKNLMEKN----GIQP-NVITFNTLIFGFCKKGKLHEANR 354 (565)
Q Consensus 285 ~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~ 354 (565)
.|.+..+. |-.. -..+|+.+...|.+.|++++|...+++..+. |-.. -..++..+...|.. |++++|++
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 77766542 1100 1345666667777777777777777665432 1110 12345555566655 66666666
Q ss_pred HHHHHHhCCC---CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 008454 355 IFSEMKATNV---SP--NVVTYNTLINGYGQVGNSEMGASLYEEMLRN----GIKVD-ILTYNALILGLCKEGKTKKAAY 424 (565)
Q Consensus 355 ~~~~m~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~ 424 (565)
.|++..+... .+ ...++..+...|.+.|++++|...|++..+. +..+. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666543210 00 0234455555555566666666555555432 11111 1133444444444555555555
Q ss_pred HHHHHH
Q 008454 425 LVKDLD 430 (565)
Q Consensus 425 ~~~~~~ 430 (565)
.|++..
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=8.1e-06 Score=77.46 Aligned_cols=178 Identities=11% Similarity=-0.041 Sum_probs=125.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-
Q 008454 201 KTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSE-RVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKL-G- 277 (565)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g- 277 (565)
....+.+..++|+++++.+...+.. +..+|+.--..+...+ .+++++++++.+.....+ +..+|+.-...+... +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCC
Confidence 3334445667888888888887755 6778888777777777 488899999888876533 667777766666666 6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-
Q 008454 278 IIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLS--------LAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGK- 348 (565)
Q Consensus 278 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~- 348 (565)
++++++++++++.+...+ |..+|+.-.-.+.+.|.++ ++++.++++.+.... |..+|+.....+.+.++
T Consensus 140 ~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp CCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTC
T ss_pred ChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 788888888888876544 7777776655555555555 788888888776543 77778777777777665
Q ss_pred ------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008454 349 ------LHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGN 383 (565)
Q Consensus 349 ------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 383 (565)
++++++.++++.... +-|...|+.+-..+.+.|+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 677777777777654 4566666665555555554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.72 E-value=3e-05 Score=78.61 Aligned_cols=347 Identities=9% Similarity=-0.022 Sum_probs=213.0
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCC-chhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHH
Q 008454 118 KDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRK-FKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVF 196 (565)
Q Consensus 118 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (565)
+.++.+..+|+.+.... |+.+.|...+....+.+. .+....+|+..+.. ....+.+..+|
T Consensus 28 ~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~----------------vg~d~~s~~iW 88 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQ----------------FENYWDSYGLY 88 (493)
T ss_dssp TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHH----------------STTCTTCHHHH
T ss_pred CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH----------------cCCCcccHHHH
Confidence 78999999999998854 488899888888776653 24455555555543 11123355666
Q ss_pred HHHHHHHH----hcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc-------------CCChHHHHHHHHHHHHCCC
Q 008454 197 DLLFKTYA----HRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLD-------------SERVDIALGFYKEMRRNRI 259 (565)
Q Consensus 197 ~~li~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~-------------~~~~~~A~~~~~~m~~~~~ 259 (565)
...+..+. .+|+.+.+..+|++........-...|......-.. .+.+..|..+++.+...-.
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~ 168 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR 168 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 66665543 346788899999999874222112223322221110 1223334444544432100
Q ss_pred CCCHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 008454 260 SPNVYTLNMVMHAFCKL--GI-----IERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPN 332 (565)
Q Consensus 260 ~p~~~~~~~li~~~~~~--g~-----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~ 332 (565)
..+...|...+..-... |- .+.+..+|+++.... +-+...|...+..+.+.|+.+.|..++++.... +.+
T Consensus 169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~ 245 (493)
T 2uy1_A 169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDG 245 (493)
T ss_dssp TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCc
Confidence 01334555555442221 11 345677888888753 346888888888889999999999999999987 334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---------C---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 008454 333 VITFNTLIFGFCKKGKLHEANRIFSEMKATN---------V---SPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIK 400 (565)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 400 (565)
...|.. |....+.++. ++.+.+.- . ......|...+....+.++.+.|..+|+.. +.. .
T Consensus 246 ~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~ 316 (493)
T 2uy1_A 246 MFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-G 316 (493)
T ss_dssp SHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-C
T ss_pred HHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-C
Confidence 433332 2222111121 22222110 0 011245666677777788899999999999 322 2
Q ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008454 401 VDILTYNALILGLCKEG-KTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEML 479 (565)
Q Consensus 401 ~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 479 (565)
.+...|...+..-...+ +.+.|..+|+...+.... +...+...+....+.|+.+.|..+|+.+. .....|...
T Consensus 317 ~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~ 390 (493)
T 2uy1_A 317 VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSM 390 (493)
T ss_dssp CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHH
T ss_pred CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHH
Confidence 34455543333333333 699999999998875322 45556667777788999999999999973 256788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 008454 480 MSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 480 i~~~~~~g~~~~A~~~~~~~~~ 501 (565)
+..-...|+.+.+..+++++.+
T Consensus 391 ~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 391 IEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8777788999999999988864
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.6e-06 Score=77.17 Aligned_cols=127 Identities=9% Similarity=-0.077 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008454 370 TYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQC 449 (565)
Q Consensus 370 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 449 (565)
.+..+...+...|++++|...|++.. .++...+..+...|...|++++|...+++..+.... +...|..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 34455666667777777777777663 446667777777777777777777777777665432 5566777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 450 VRKNSERAFQLYKSMIRSGCRPNK----------------HIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 450 ~~~~~~~A~~~~~~m~~~~~~p~~----------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
..|++++|++.|+++++.. +.+. ..+..+..++.+.|++++|...++++.+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777777777653 2222 55666666777777777777777777664
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1e-05 Score=76.85 Aligned_cols=175 Identities=9% Similarity=-0.050 Sum_probs=136.5
Q ss_pred HhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCcCHH
Q 008454 151 TKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRK-KFRNATDTFCQMRDYGFLPIIE 229 (565)
Q Consensus 151 ~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~ 229 (565)
......++|+.+.+.++.. .|.+..+|+.--..+...| +++++++.++.+...+.+ +..
T Consensus 65 ~~~e~se~AL~lt~~~L~~-------------------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~ 124 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM-------------------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQ 124 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHH
T ss_pred HhCCCCHHHHHHHHHHHHh-------------------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHH
Confidence 3344456788888888877 4556677887777777788 599999999999998866 888
Q ss_pred HHHHHHHHHHcC-C-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhCCCCCCHH
Q 008454 230 SCNKFLSSLLDS-E-RVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIE--------RAVEVFKNMESMGFIPSVT 299 (565)
Q Consensus 230 ~~~~ll~~~~~~-~-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~ 299 (565)
+|+.-...+... + ++++++++++.+.+... -|-.+|+.-.-.+.+.|.++ ++++.++++.+..+. |..
T Consensus 125 aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~S 202 (349)
T 3q7a_A 125 VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNS 202 (349)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHH
Confidence 998887777776 6 88999999999987653 47788876666666666665 899999999987655 889
Q ss_pred HHHHHHHHHHhcCC-------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 300 TYNTLISGHCNKGL-------LSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGK 348 (565)
Q Consensus 300 ~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 348 (565)
+|+.....+.+.++ ++++++.++++..... -|...|+-+-..+.+.|+
T Consensus 203 AW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 203 AWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 99988888888776 6888899888887653 378888877776666664
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=6.3e-06 Score=77.62 Aligned_cols=162 Identities=10% Similarity=0.036 Sum_probs=86.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 008454 339 LIFGFCKKGKLHEANRIFSEMKATNV-SPNV----VTYNTLINGYGQVGNSEMGASLYEEMLRNGIK-VD----ILTYNA 408 (565)
Q Consensus 339 li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~ 408 (565)
.+..+...|++++|.+++++..+... .++. ..+..+...+...|++++|...+++..+.... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566677777777777777665321 1121 12223445555556777777777776653211 12 234666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh----C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 008454 409 LILGLCKEGKTKKAAYLVKDLDK----N-SLVP-NASTYSALITGQCVRKNSERAFQLYKSMIRS----GCRPN-KHIFE 477 (565)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~~~~----~-~~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~ 477 (565)
+...|...|++++|...++++.+ . +..+ ...+|..+...|.+.|++++|+..+++.++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66666666666666666666552 1 1111 1124555556666666666666666655532 11111 34555
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHH
Q 008454 478 MLMSTFCQNE-DFDRAAEVLLEML 500 (565)
Q Consensus 478 ~li~~~~~~g-~~~~A~~~~~~~~ 500 (565)
.+..++.+.| ++++|.+.++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5555566666 3466666555554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=3.8e-06 Score=79.13 Aligned_cols=164 Identities=6% Similarity=-0.043 Sum_probs=125.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHH
Q 008454 373 TLINGYGQVGNSEMGASLYEEMLRNGI-KVDI----LTYNALILGLCKEGKTKKAAYLVKDLDKNSLV-PN----ASTYS 442 (565)
Q Consensus 373 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~ 442 (565)
..+..+...|++++|..++++..+... .++. ..+..+...+...|++++|...++++.+.... ++ ..+|+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778899999999999999987532 2221 23445777777888999999999999874322 22 33689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHH
Q 008454 443 ALITGQCVRKNSERAFQLYKSMIRS-----GCRPN-KHIFEMLMSTFCQNEDFDRAAEVLLEMLEK----CMAPD-SIIL 511 (565)
Q Consensus 443 ~li~~~~~~~~~~~A~~~~~~m~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~ 511 (565)
.+...|...|++++|+..|+++++. +..+. ..++..+...|.+.|++++|...+++.++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999999999852 11122 247888999999999999999999988753 22222 5688
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHH
Q 008454 512 SELYSGLHHCGK-DELAMKLFRKMEI 536 (565)
Q Consensus 512 ~~li~~~~~~g~-~~~A~~~~~~m~~ 536 (565)
..+..++.+.|+ +++|.+.+++..+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999994 6999999988753
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.3e-06 Score=76.20 Aligned_cols=129 Identities=10% Similarity=-0.049 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008454 334 ITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGL 413 (565)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 413 (565)
..+..+...+...|++++|++.|++.. .++...+..+...+...|++++|...+++..+... .+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHH
Confidence 445666778888899999998888763 55778888888888899999999999988887643 3677888888889
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 414 CKEGKTKKAAYLVKDLDKNSLVP---------------NASTYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~p---------------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
...|++++|...|+.+.+..... ....+..+..++...|++++|.+.|+.+++.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999999998888754321 1267788888888899999999999988875
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.61 E-value=2.4e-06 Score=72.48 Aligned_cols=129 Identities=9% Similarity=-0.115 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 404 LTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTF 483 (565)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (565)
..+..+...+...|++++|...++...+.... +...+..+...+...|++++|...+++.++.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 44566667777777777777777777665332 56677777777778888888888888877764 44567777777788
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 008454 484 CQNEDFDRAAEVLLEMLEKCMAPDSIILSEL--YSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~ 535 (565)
...|++++|...++++.+... .+...+..+ +..+.+.|++++|.+.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888888777532 244444333 333667788888888877654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-05 Score=75.36 Aligned_cols=165 Identities=10% Similarity=0.012 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--H
Q 008454 335 TFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNV------VTYNTLINGYGQVGNSEMGASLYEEMLRNGI---KVD--I 403 (565)
Q Consensus 335 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~--~ 403 (565)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|...+++..+... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444556667777777777777666554211 11 1123344455566677777777766654311 111 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-C
Q 008454 404 LTYNALILGLCKEGKTKKAAYLVKDLDK---NSL-VP--NASTYSALITGQCVRKNSERAFQLYKSMIRSG----CRP-N 472 (565)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~-~p--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~----~~p-~ 472 (565)
.+|+.+...|...|++++|...++++.+ ... .+ ...+|..+...|...|++++|+..+++.++.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4566666677777777777777666542 110 11 11356666666667777777777666665421 001 1
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 008454 473 KHIFEMLMSTFCQNEDFDRA-AEVLLEML 500 (565)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~A-~~~~~~~~ 500 (565)
..+|..+..++.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45566666666677777666 55555544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.1e-06 Score=68.31 Aligned_cols=94 Identities=15% Similarity=0.044 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ 485 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 485 (565)
+......|.+.|++++|+..|++..+.... +...|..+..++.+.|++++|+..+++.++.. +.+...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 333444444444444444444444433222 33444444444444444444444444444432 2233444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 008454 486 NEDFDRAAEVLLEMLE 501 (565)
Q Consensus 486 ~g~~~~A~~~~~~~~~ 501 (565)
.|++++|.+.|++.++
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4444444444444444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-05 Score=76.00 Aligned_cols=166 Identities=7% Similarity=-0.030 Sum_probs=126.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCC--HH
Q 008454 370 TYNTLINGYGQVGNSEMGASLYEEMLRNGIKVD-----ILTYNALILGLCKEGKTKKAAYLVKDLDKNSL---VPN--AS 439 (565)
Q Consensus 370 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~~ 439 (565)
.+...+..+...|++++|.+.+.+..+...... ...+..+...+...|++++|...+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445567788899999999999998887643211 12344566777888999999999999875322 122 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CH
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRS-GCRPN-----KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKC----MAP-DS 508 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~ 508 (565)
+|+.+...|...|++++|+..++++++. ...++ ..++..+...|...|++++|...+++.++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8899999999999999999999998832 00222 2578889999999999999999999987542 111 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 008454 509 IILSELYSGLHHCGKDELA-MKLFRKME 535 (565)
Q Consensus 509 ~~~~~li~~~~~~g~~~~A-~~~~~~m~ 535 (565)
.+|..+...|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6788999999999999999 77777654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.54 E-value=4.4e-06 Score=70.78 Aligned_cols=126 Identities=12% Similarity=0.058 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008454 371 YNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCV 450 (565)
Q Consensus 371 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 450 (565)
+..+...+...|++++|...|++..+... .+..++..+..++...|++++|...+++..+.... +...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 44444555555555555555555554322 24555555666666666666666666665554322 45556666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHH
Q 008454 451 RKNSERAFQLYKSMIRSGCRPNKHIFEML--MSTFCQNEDFDRAAEVLLEM 499 (565)
Q Consensus 451 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l--i~~~~~~g~~~~A~~~~~~~ 499 (565)
.|++++|...++++++.. +.+...+..+ +..+...|++++|...+.+.
T Consensus 94 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666666543 2333343222 22355566666666666554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.53 E-value=9.4e-07 Score=73.82 Aligned_cols=100 Identities=11% Similarity=-0.009 Sum_probs=75.7
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVM 270 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 270 (565)
.+...+..+...+.+.|++++|++.|+++...+.. +...|..+..++...|++++|+..|++..+... -+...|..+.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg 111 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHH
Confidence 35566777777888888888888888888776643 677788888888888888888888888776542 2566777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC
Q 008454 271 HAFCKLGIIERAVEVFKNMESM 292 (565)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~m~~~ 292 (565)
.+|...|++++|+..|++..+.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 7888888888888888877765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.5e-06 Score=68.01 Aligned_cols=94 Identities=17% Similarity=0.076 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 336 FNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCK 415 (565)
Q Consensus 336 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 415 (565)
+......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++.++.+.. +...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Confidence 3334444444444444444444444332 233444444444444444444444444444443221 33444444444444
Q ss_pred cCCHHHHHHHHHHHHh
Q 008454 416 EGKTKKAAYLVKDLDK 431 (565)
Q Consensus 416 ~g~~~~A~~~~~~~~~ 431 (565)
.|++++|...|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4444444444444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.5e-06 Score=76.67 Aligned_cols=84 Identities=10% Similarity=-0.010 Sum_probs=38.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCH
Q 008454 345 KKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRN----GIK-VDILTYNALILGLCKEGKT 419 (565)
Q Consensus 345 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~ 419 (565)
..|++++|.++++.+... .......+..+...+...|++++|...+++..+. +.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644433321 1123344555555555566666666655555431 111 1223344444555555555
Q ss_pred HHHHHHHHHH
Q 008454 420 KKAAYLVKDL 429 (565)
Q Consensus 420 ~~A~~~~~~~ 429 (565)
++|...+++.
T Consensus 83 ~~A~~~~~~a 92 (203)
T 3gw4_A 83 DAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.50 E-value=7e-06 Score=65.44 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFC 484 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (565)
.+..+...+...|++++|...++++.+... .+...+..+...+...|++++|..+++++.+.. +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 344444444444444444444444443321 133444444444444555555555555444432 233444444444455
Q ss_pred hcCCHHHHHHHHHHHHH
Q 008454 485 QNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 485 ~~g~~~~A~~~~~~~~~ 501 (565)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 55555555555554444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.50 E-value=8.7e-07 Score=82.99 Aligned_cols=195 Identities=11% Similarity=-0.019 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 332 NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALIL 411 (565)
Q Consensus 332 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 411 (565)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...+++..+.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34556666667777777777777777766653 335666667777777777777777777777665332 5666777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008454 412 GLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDR 491 (565)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 491 (565)
+|...|++++|...|+...+.+.. +...+...+....+ ..++ .-+........+.+......+... ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKK-KRWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHH-HHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHH-HHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 777777777777777766543210 00001111111111 0111 112222223334444444444322 2577888
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 008454 492 AAEVLLEMLEKCMAPDSI-ILSELYSGLHHC-GKDELAMKLFRKMEIR 537 (565)
Q Consensus 492 A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 537 (565)
|.+.+++..+. .|+.. ....+...+.+. +.+++|.++|++..+.
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88887777664 44443 333333334443 6677888888877543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.3e-06 Score=76.73 Aligned_cols=187 Identities=11% Similarity=-0.043 Sum_probs=113.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCcCHHHHHHH-------HHHHHcCCChHHHHHHHHHHHHCCCCCC---------------
Q 008454 205 HRKKFRNATDTFCQMRDYGFLPIIESCNKF-------LSSLLDSERVDIALGFYKEMRRNRISPN--------------- 262 (565)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-------l~~~~~~~~~~~A~~~~~~m~~~~~~p~--------------- 262 (565)
..++...|.+.|.++.+.... ....|+.+ ...+...++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 578999999999999887654 67788777 4556655556655555554333 1111
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--H
Q 008454 263 -------VYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPN--V 333 (565)
Q Consensus 263 -------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~ 333 (565)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..++...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1223345556667777777777777766543 333344445556667777777777776443321 111 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 334 ITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPN--VVTYNTLINGYGQVGNSEMGASLYEEMLRN 397 (565)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 397 (565)
..+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3455566667777777777777776654322132 234445555666677777777777776664
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.6e-06 Score=67.56 Aligned_cols=118 Identities=11% Similarity=-0.044 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008454 402 DILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMS 481 (565)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 481 (565)
+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.+.++++++.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3445555666666666666666666666554322 45556666666666666666666666666543 334556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008454 482 TFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCG 522 (565)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 522 (565)
++...|++++|.+.+++..+... .+...+..+...+.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 66666666666666666655421 12334444444444433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.1e-06 Score=75.65 Aligned_cols=120 Identities=9% Similarity=-0.064 Sum_probs=59.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCC
Q 008454 309 CNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKAT----NVS-PNVVTYNTLINGYGQVGN 383 (565)
Q Consensus 309 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~ 383 (565)
...|++++|.++++.+... ......++..+...+...|++++|...+++..+. +.. .....+..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3456666666644444331 1124455566666666666666666666665441 111 122445555666666666
Q ss_pred hHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008454 384 SEMGASLYEEMLRN----GIKV--DILTYNALILGLCKEGKTKKAAYLVKDL 429 (565)
Q Consensus 384 ~~~A~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~ 429 (565)
+++|...+++..+. +..+ ....+..+...+...|++++|...+++.
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666666655432 1011 1233444455555555555555555544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.46 E-value=9.8e-06 Score=64.56 Aligned_cols=95 Identities=16% Similarity=0.175 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008454 371 YNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCV 450 (565)
Q Consensus 371 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 450 (565)
+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+... .+...+..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHH
Confidence 33444444444444444444444443321 1334444444555555555555555555444322 134445555555555
Q ss_pred cCCHHHHHHHHHHHHHc
Q 008454 451 RKNSERAFQLYKSMIRS 467 (565)
Q Consensus 451 ~~~~~~A~~~~~~m~~~ 467 (565)
.|++++|...++++.+.
T Consensus 90 ~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 90 QGDYDEAIEYYQKALEL 106 (125)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 55555555555555544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=5.8e-06 Score=66.56 Aligned_cols=117 Identities=11% Similarity=-0.070 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 404 LTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTF 483 (565)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (565)
..+..+...+...|++++|...++++.+.... +...+..+...+...|++++|.+.+++.++.. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 33444444555555555555555554443211 34444555555555555555555555555432 23344455555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008454 484 CQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGK 523 (565)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 523 (565)
...|++++|...+++..+.. +.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 55555555555555554432 1233444444444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.4e-06 Score=67.67 Aligned_cols=121 Identities=7% Similarity=-0.043 Sum_probs=87.5
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNM 268 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 268 (565)
.+.+...+..+...+...|++++|+..|++..+.... +...+..+...+...|++++|+..+++..+.. +.+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 3445677888888888889999999988888876533 67788888888888888888888888887653 235677777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008454 269 VMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKG 312 (565)
Q Consensus 269 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 312 (565)
+...+...|++++|.+.+++..+.... +...+..+...+.+.|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 777888888888888888877664322 3444555555554443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.45 E-value=6.9e-07 Score=83.68 Aligned_cols=98 Identities=9% Similarity=-0.009 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 139 TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (565)
+...+..+...+...|++++|...+++.++. .+.+...|..+..+|.+.|++++|++.+++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 63 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR-------------------NPLVAVYYTNRALCYLKMQQPEQALADCRR 63 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3455566666666667777777766666665 334556666666666667777777777766
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 219 MRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 219 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
..+.... +...+..+..++...|++++|+..|+...+
T Consensus 64 al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 64 ALELDGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6665432 556666666666666666666666666544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.44 E-value=6.3e-06 Score=68.73 Aligned_cols=97 Identities=11% Similarity=0.060 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 404 LTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTF 483 (565)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (565)
..+..+...+.+.|++++|...|+.+.+.... +...|..+..+|...|++++|+..|+++++.. +-+...|..+..++
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 34555566666666666666666666654432 55566666666666666666666666666653 33455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 008454 484 CQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~ 502 (565)
...|++++|...|+++++.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.44 E-value=6.7e-06 Score=79.11 Aligned_cols=130 Identities=14% Similarity=0.032 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008454 404 LTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPN--------------ASTYSALITGQCVRKNSERAFQLYKSMIRSGC 469 (565)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 469 (565)
..+..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..++++++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3445555555555555555555555544322211 3566666666777777777777777776653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 008454 470 RPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELA-MKLFRKME 535 (565)
Q Consensus 470 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 535 (565)
+.+...|..+..++...|++++|...|+++++.. +.+...+..+..++.+.|+.++| ..+|+.|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666667777777777777777777776652 22455666666666667776666 34555553
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=7.1e-06 Score=66.03 Aligned_cols=120 Identities=8% Similarity=-0.114 Sum_probs=81.6
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMH 271 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 271 (565)
+...+..+...+...|++++|++.|++....... +...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 3456667777778888888888888887765432 56777777777777778888877777776643 234666677777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008454 272 AFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLL 314 (565)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 314 (565)
.+...|++++|.+.+++..+.... +...+..+..++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence 777777777777777776665322 455566666666665543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.41 E-value=5.8e-06 Score=75.86 Aligned_cols=202 Identities=11% Similarity=-0.033 Sum_probs=132.9
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHH-------HHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHH----
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIV-------LHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILY---- 184 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l-------~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~---- 184 (565)
..+++..|++.|..+....| .....|..+ ..++.+..+..++...+...+... ...+...+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP--~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~-----p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE--SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQIS-----MSTLNARIAIGGL 90 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCC-----GGGGCCEEECCTT
T ss_pred cCCCHHHHHHHHHHHHHhCh--hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCC-----hhhhhhhhccCCc
Confidence 46799999999999999876 456677666 455555555555555555444421 000000000
Q ss_pred ----hcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC
Q 008454 185 ----SYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRIS 260 (565)
Q Consensus 185 ----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~ 260 (565)
.|+ ...-..+.-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .
T Consensus 91 y~~~~~~-v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d 166 (282)
T 4f3v_A 91 YGDITYP-VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-D 166 (282)
T ss_dssp TCCCEEE-CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-C
T ss_pred ccccccc-cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-C
Confidence 000 00112344556778889999999999999988765 433366666678888999999999997554321 1
Q ss_pred CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 008454 261 PN--VYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPS--VTTYNTLISGHCNKGLLSLAMKFKNLMEKNG 328 (565)
Q Consensus 261 p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 328 (565)
|. ...+..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 11 23677778888888999999999988875432243 3355666777888888888888888888763
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.39 E-value=7.3e-06 Score=78.84 Aligned_cols=146 Identities=11% Similarity=-0.030 Sum_probs=87.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 332 NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALIL 411 (565)
Q Consensus 332 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 411 (565)
+...+..+...+.+.|++++|+..|++..+.. |+...+ ..+.+..+-. .....|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~~--------~~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQA--------LRLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHHH--------HHHHHHHHHHH
Confidence 46677778888888888888888888877653 221000 0011110000 01345566666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008454 412 GLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDR 491 (565)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 491 (565)
+|.+.|++++|...++++.+.... +...|..+..+|...|++++|+..|+++++.. +-+...+..+..++.+.|+.++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666655432 55666666667777777777777777776653 3455666666666666666666
Q ss_pred H-HHHHHHHH
Q 008454 492 A-AEVLLEML 500 (565)
Q Consensus 492 A-~~~~~~~~ 500 (565)
| ...++.|.
T Consensus 283 a~~~~~~~~~ 292 (336)
T 1p5q_A 283 REKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6 33455544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.4e-06 Score=72.67 Aligned_cols=120 Identities=9% Similarity=0.078 Sum_probs=79.1
Q ss_pred hCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHH
Q 008454 152 KNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESC 231 (565)
Q Consensus 152 ~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 231 (565)
..|++++|...+++.++. .+.++.++..+...|...|++++|+..|++..+.+.. +...+
T Consensus 22 ~~~~~~~A~~~~~~al~~-------------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 81 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA-------------------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELY 81 (177)
T ss_dssp -----CCCCHHHHHHHHH-------------------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHH
T ss_pred hccCHHHHHHHHHHHHHh-------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHH
Confidence 345666666666666554 3456677777777777778888888887777665433 56666
Q ss_pred HHHHHH-HHcCCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 232 NKFLSS-LLDSERV--DIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM 292 (565)
Q Consensus 232 ~~ll~~-~~~~~~~--~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (565)
..+... +...|++ ++|...|+...+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 82 ~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 82 AALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666 6677776 77777777776653 224566667777777777777777777777665
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.1e-06 Score=72.89 Aligned_cols=119 Identities=12% Similarity=0.065 Sum_probs=59.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 008454 381 VGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITG-QCVRKNS--ERA 457 (565)
Q Consensus 381 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~~~~~~--~~A 457 (565)
.|++++|...+++..+... .+...+..+...|...|++++|...|+++.+.... +...+..+... +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHH
Confidence 4455555555555544322 24455555555555555555555555555443222 34444445544 4455555 555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 458 FQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 458 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
...++++++.. +.+...+..+...+...|++++|...++++++.
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 55555555542 233445555555555555666665555555553
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00022 Score=67.38 Aligned_cols=138 Identities=7% Similarity=-0.008 Sum_probs=76.1
Q ss_pred HcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008454 275 KLGIIE-RAVEVFKNMESMGFIPSVTTYNTLISGHCNKGL----------LSLAMKFKNLMEKNGIQPNVITFNTLIFGF 343 (565)
Q Consensus 275 ~~g~~~-~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 343 (565)
+.|.+. +|+++++.+...... +...|+.--..+...+. +++++.+++.+..... -+..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 445543 677777777765433 44555543333333222 4566666666665432 2556666555555
Q ss_pred HHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 344 CKKG--KLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGN-SEMGASLYEEMLRNGIKVDILTYNALILGLCKE 416 (565)
Q Consensus 344 ~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 416 (565)
.+.| .+++++..++.+.+.. +-|...|+.-.-.+...|. ++++++.++.+++..+. |...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 5555 3666666666666654 4455566555555555565 36666666666665443 555555555444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=2e-06 Score=71.70 Aligned_cols=99 Identities=8% Similarity=-0.073 Sum_probs=70.4
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMH 271 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 271 (565)
+...+..+...+...|++++|+..|++....+.. +...|..+..++...|++++|+..|++..... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 4556666777777788888888888877765533 67777777777777777877777777776653 225566667777
Q ss_pred HHHHcCCHHHHHHHHHHHHhC
Q 008454 272 AFCKLGIIERAVEVFKNMESM 292 (565)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~~~ 292 (565)
++...|++++|.+.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777776654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.7e-06 Score=70.92 Aligned_cols=96 Identities=11% Similarity=0.021 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 404 LTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTF 483 (565)
Q Consensus 404 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (565)
..+..+...+.+.|++++|...|+.+...... +...|..+..++...|++++|+..|+++++.. +.+...+..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 34444555555555555555555555543322 44455555555555555555555555555542 23344455555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 008454 484 CQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~ 501 (565)
...|++++|...|++.++
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00069 Score=63.90 Aligned_cols=166 Identities=10% Similarity=0.011 Sum_probs=106.4
Q ss_pred HhcCChH-HHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 204 AHRKKFR-NATDTFCQMRDYGFLPIIESCNKFLSSLLDSER----------VDIALGFYKEMRRNRISPNVYTLNMVMHA 272 (565)
Q Consensus 204 ~~~g~~~-~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 272 (565)
.+.|.+. +|+++++.+...++. +..+|+.--..+...+. +++++.+++.+..... -+..+|+.-.-.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3445544 788888888887654 56667665555544333 5677777777776543 366677766666
Q ss_pred HHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---
Q 008454 273 FCKLG--IIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGL-LSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKK--- 346 (565)
Q Consensus 273 ~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--- 346 (565)
+...| .+++++++++++.+.... |..+|+.-.-.+...|. ++++++.++.+.+..+. |..+|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 66666 377888888888776544 77777776666667776 47778888777776543 667776666555544
Q ss_pred -----------CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008454 347 -----------GKLHEANRIFSEMKATNVSPNVVTYNTL 374 (565)
Q Consensus 347 -----------g~~~~A~~~~~~m~~~~~~~~~~~~~~l 374 (565)
+.++++++.+....... +-|...|+-+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~ 233 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYH 233 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 33566666666665543 3445555433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-06 Score=76.94 Aligned_cols=125 Identities=10% Similarity=-0.042 Sum_probs=55.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCC-CC--------------HH
Q 008454 200 FKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRIS-PN--------------VY 264 (565)
Q Consensus 200 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~-p~--------------~~ 264 (565)
+......|+++++.+.|+.-..... .....+..+...+...|++++|+..|++..+.... ++ ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 3344444566666555543322111 13455666667777777777777777777654211 10 13
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008454 265 TLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEK 326 (565)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 326 (565)
.|..+..++...|++++|+..+++..+... .+...+..+..+|...|++++|...+++..+
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 444444444444555555444444444321 1334444444444444444444444444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.7e-05 Score=62.58 Aligned_cols=94 Identities=11% Similarity=-0.037 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ 485 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 485 (565)
+..+...+.+.|++++|...|++..+.... +...|..+..++...|++++|+..+++.++.. +.+...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 344444445555555555555554443222 34444555555555555555555555555442 2334444445555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 008454 486 NEDFDRAAEVLLEMLE 501 (565)
Q Consensus 486 ~g~~~~A~~~~~~~~~ 501 (565)
.|++++|...+++.++
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555555444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.5e-05 Score=64.11 Aligned_cols=94 Identities=13% Similarity=0.021 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK 275 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 275 (565)
+..+...+.+.|++++|++.|++..+.... +...|..+..++.+.|++++|+..|++..+.. +.+...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 333444444444444444444444443322 34444444444444444444444444444332 1133444444444444
Q ss_pred cCCHHHHHHHHHHHHh
Q 008454 276 LGIIERAVEVFKNMES 291 (565)
Q Consensus 276 ~g~~~~a~~~~~~m~~ 291 (565)
.|++++|.+.|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 4444444444444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=2.6e-05 Score=68.45 Aligned_cols=131 Identities=12% Similarity=-0.038 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLV-P--------------NASTYSALITGQCVRKNSERAFQLYKSMIRSGC 469 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p--------------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 469 (565)
.+..+...+...|++++|...|++..+.... | ....|..+..++...|++++|+..++++++..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 3444444555555555555555555442211 0 02566667777777777777777777777753
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHC
Q 008454 470 RPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAM-KLFRKMEIR 537 (565)
Q Consensus 470 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~ 537 (565)
+.+...+..+..++...|++++|...|++.++.. +-+..++..+..++...|+.+++. ..|..|...
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4456677777777777888888888887777653 225566666666666666666655 455555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.3e-05 Score=63.23 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHH
Q 008454 441 YSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKC--MAPD----SIILSEL 514 (565)
Q Consensus 441 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~~~l 514 (565)
+..+...+.+.|++++|++.|+++++.. +-+...|..+..+|.+.|++++|++.+++.++.. ...+ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3334444444444444444444444432 2234444444444444444444444444443321 0001 1234444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 008454 515 YSGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 515 i~~~~~~g~~~~A~~~~~~m~~ 536 (565)
..++...|++++|++.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4445555555555555555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=7.2e-05 Score=58.68 Aligned_cols=94 Identities=12% Similarity=-0.018 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ 485 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 485 (565)
+..+...+...|++++|...++........ +...+..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 333444444444444444444444332211 33344444444444444444444444444432 2233444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 008454 486 NEDFDRAAEVLLEMLE 501 (565)
Q Consensus 486 ~g~~~~A~~~~~~~~~ 501 (565)
.|++++|...+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4444444444444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=6.3e-05 Score=59.01 Aligned_cols=94 Identities=14% Similarity=0.009 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 336 FNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCK 415 (565)
Q Consensus 336 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 415 (565)
+..+...+...|++++|.+.++...... +.+...+..+...+...|++++|...+++..+.... +...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 223334444444444444444444444444433211 33344444444444
Q ss_pred cCCHHHHHHHHHHHHh
Q 008454 416 EGKTKKAAYLVKDLDK 431 (565)
Q Consensus 416 ~g~~~~A~~~~~~~~~ 431 (565)
.|++++|...++...+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4444444444444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.22 E-value=3.1e-05 Score=62.41 Aligned_cols=105 Identities=14% Similarity=0.104 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSG--CRPN----KHIFEM 478 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~----~~~~~~ 478 (565)
.+..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|++.+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4455666666666666666666666654332 45566666666666666666666666665431 1111 134556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008454 479 LMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILS 512 (565)
Q Consensus 479 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (565)
+..++...|++++|++.|++.++. .||..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 666677777777777777776653 34544433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.21 E-value=2e-05 Score=61.32 Aligned_cols=101 Identities=13% Similarity=-0.040 Sum_probs=74.4
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC--CHHHHHH
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISP--NVYTLNM 268 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~ 268 (565)
.+..++..+...+...|++++|+..|++..+.... +...+..+...+...|++++|...|++..+.. +. +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 35566677788888888888888888888776533 56777777788888888888888888877653 22 4667777
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhCC
Q 008454 269 VMHAFCKL-GIIERAVEVFKNMESMG 293 (565)
Q Consensus 269 li~~~~~~-g~~~~a~~~~~~m~~~g 293 (565)
+...+... |++++|.+.++......
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 77777777 78888888777776653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00013 Score=72.80 Aligned_cols=196 Identities=11% Similarity=-0.081 Sum_probs=99.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCH
Q 008454 271 HAFCKLGIIERAVEVFKNMESMGFIPS----------------VTTYNTLISGHCNKGLLSLAMKFKNLMEKNG-IQPNV 333 (565)
Q Consensus 271 ~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~ 333 (565)
+.+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445667778888877777776532211 1234556666666667666666666554321 01111
Q ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CC--C
Q 008454 334 I----TFNTLIFGFCKKGKLHEANRIFSEMKA----TNVSPN-VVTYNTLINGYGQVGNSEMGASLYEEMLRN--GI--K 400 (565)
Q Consensus 334 ~----~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~--~ 400 (565)
. +.+.+-..+...|++++|.++++.... .+..+. ..++..+...+...|++++|..+++++... +. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 112222233344566666666665543 111111 234555666666666666666666655432 11 1
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 401 V-DILTYNALILGLCKEGKTKKAAYLVKDLDKN---SLVP-N--ASTYSALITGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 401 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~p-~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 466 (565)
+ ...++..++..|...|++++|..+++..... ...| . ...+..+...+...|++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 1345555666666666666666666654321 0111 1 12344444555556666666666655543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.18 E-value=7.6e-05 Score=60.69 Aligned_cols=98 Identities=13% Similarity=-0.013 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008454 402 DILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMS 481 (565)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 481 (565)
+...+..+...+...|++++|...|+........ +...|..+...+...|++++|...+++.++.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 3444445555555555555555555554443322 34445555555555555555555555555442 233445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 008454 482 TFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~ 501 (565)
++...|++++|...|+++++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.18 E-value=3e-05 Score=63.94 Aligned_cols=94 Identities=17% Similarity=0.016 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQ 485 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 485 (565)
+..+...+.+.|++++|...|+.+...+.. +...|..+..++...|++++|+..|+++++.. +.+...+..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 344444555555555555555555443322 44455555555555555555555555555543 3334445555555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 008454 486 NEDFDRAAEVLLEMLE 501 (565)
Q Consensus 486 ~g~~~~A~~~~~~~~~ 501 (565)
.|++++|...|+++++
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.18 E-value=4.3e-05 Score=64.69 Aligned_cols=98 Identities=12% Similarity=-0.055 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008454 403 ILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMST 482 (565)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 482 (565)
...+..+...+.+.|++++|...|++..+.... +...|..+..+|...|++++|+..|++.++.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445566666666667777777777666654332 55666666667777777777777777776653 3446666667777
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 008454 483 FCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~ 502 (565)
+...|++++|...|++.++.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 77777777777777776654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.17 E-value=3.9e-05 Score=62.48 Aligned_cols=97 Identities=9% Similarity=0.006 Sum_probs=47.3
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMH 271 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 271 (565)
++..+..+...+...|++++|+..|+........ +...|..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 3444444555555555555555555554443322 34445555555555555555555555544432 123444555555
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 008454 272 AFCKLGIIERAVEVFKNME 290 (565)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~ 290 (565)
++...|++++|...|++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5555555555555555444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.1e-05 Score=64.82 Aligned_cols=97 Identities=7% Similarity=0.014 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 140 LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQM 219 (565)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 219 (565)
...+..+...+...|++++|...+++.++. .+.++.+|..+..+|.+.|++++|+..|++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 71 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI-------------------APANPIYLSNRAAAYSASGQHEKAAEDAELA 71 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 344555555555566666666666555554 3334555555555556666666666666555
Q ss_pred HHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 220 RDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 220 ~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
.+.+.. +...|..+..++...|++++|...|++..+
T Consensus 72 l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 72 TVVDPK-YSKAWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 554422 455555555555555555555555555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.17 E-value=3.6e-05 Score=63.44 Aligned_cols=98 Identities=10% Similarity=-0.076 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008454 438 ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSG 517 (565)
Q Consensus 438 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 517 (565)
...+..+...+...|++++|...|+.++... +.+...|..+..++...|++++|...++++++... .+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHH
Confidence 3456677788899999999999999999875 56788899999999999999999999999998743 366778889999
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 008454 518 LHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 518 ~~~~g~~~~A~~~~~~m~~~ 537 (565)
|...|++++|.+.|++..+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998765
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.16 E-value=2.4e-05 Score=62.83 Aligned_cols=95 Identities=12% Similarity=0.100 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHHHHH
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGC--RPN----KHIFEML 479 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~----~~~~~~l 479 (565)
+..+...+...|++++|...++...+.... +...+..+...+...|++++|...++++++... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 334444444444444444444444433211 334444444444444555555554444443310 111 3344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 008454 480 MSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 480 i~~~~~~g~~~~A~~~~~~~~~ 501 (565)
..++...|++++|...++++.+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4445555555555555555444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00019 Score=71.50 Aligned_cols=197 Identities=10% Similarity=-0.044 Sum_probs=119.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCC
Q 008454 305 ISGHCNKGLLSLAMKFKNLMEKNGIQPN----------------VITFNTLIFGFCKKGKLHEANRIFSEMKATN-VSPN 367 (565)
Q Consensus 305 i~~~~~~g~~~~a~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~ 367 (565)
...+.+.|++++|.+.+..+.+...... ..++..+...|.+.|++++|.+.+..+...- ...+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456777888888888888877542211 1235667788888888888888887765421 1111
Q ss_pred H----HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC
Q 008454 368 V----VTYNTLINGYGQVGNSEMGASLYEEMLRN----GIKV-DILTYNALILGLCKEGKTKKAAYLVKDLDKN----SL 434 (565)
Q Consensus 368 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~ 434 (565)
. ...+.+...+...|+.++|..+++..... +..+ -..++..+...|...|++++|..+++++... +-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 11222333334557777887777766532 2222 2456677777777788888887777766432 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 435 VP-NASTYSALITGQCVRKNSERAFQLYKSMIRS--GCRPN----KHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 435 ~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
.+ ....|..++..|...|++++|..+++..... .+..+ ...+..+...+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 1335677777777777777777777776542 11111 23455555566667777777777766655
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.11 E-value=2.8e-05 Score=62.51 Aligned_cols=95 Identities=6% Similarity=0.035 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRI--SPN----VYTLNMV 269 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~--~p~----~~~~~~l 269 (565)
+..+...+...|++++|+..|++..+.... +...+..+...+...|++++|...++...+... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 333444444444444444444444443211 344444444444444444444444444433211 011 3344444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 008454 270 MHAFCKLGIIERAVEVFKNMES 291 (565)
Q Consensus 270 i~~~~~~g~~~~a~~~~~~m~~ 291 (565)
...+...|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4455555555555555555444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00017 Score=59.26 Aligned_cols=97 Identities=10% Similarity=-0.086 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 008454 403 ILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPN----ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEM 478 (565)
Q Consensus 403 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 478 (565)
...+..+...+...|++++|...|++..+.. |+ ...|..+...+...|++++|+..+++.++.. +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 4444445555555555555555555554432 22 3344444555555555555555555555432 223444455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 479 LMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 479 li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
+..++...|++++|...|++.++.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555555555555555555555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00011 Score=60.41 Aligned_cols=100 Identities=17% Similarity=0.043 Sum_probs=76.3
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHH
Q 008454 190 DSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPI----IESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYT 265 (565)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 265 (565)
+.+...+..+...+...|++++|++.|++..+.. |+ ...+..+...+...|++++|+..++...+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 3456677788888888889999988888888765 44 5677777888888888888888888876653 235667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 266 LNMVMHAFCKLGIIERAVEVFKNMESM 292 (565)
Q Consensus 266 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (565)
+..+..++...|++++|.+.|++..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 777777788888888888888877764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.2e-05 Score=60.15 Aligned_cols=96 Identities=13% Similarity=0.097 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHH
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAP--DSIILSELYSG 517 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~ 517 (565)
.+..+...+...|++++|...++++++.. +.+...+..+...+...|++++|...++++.+.. +. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 44555556666666666666666666653 3445566666666666677777777776666542 22 35566666666
Q ss_pred HHhc-CCHHHHHHHHHHHHHC
Q 008454 518 LHHC-GKDELAMKLFRKMEIR 537 (565)
Q Consensus 518 ~~~~-g~~~~A~~~~~~m~~~ 537 (565)
+.+. |++++|.+.+++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 6777 7777777777666544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=2.5e-05 Score=62.41 Aligned_cols=91 Identities=8% Similarity=-0.076 Sum_probs=45.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 199 LFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGI 278 (565)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 278 (565)
+...+.+.|++++|+..|++..+.... +...|..+..++...|++++|+..|++..+... -+...+..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 344444555555555555555544322 445555555555555555555555555544321 134444555555555555
Q ss_pred HHHHHHHHHHHHh
Q 008454 279 IERAVEVFKNMES 291 (565)
Q Consensus 279 ~~~a~~~~~~m~~ 291 (565)
+++|+..+++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.7e-05 Score=65.19 Aligned_cols=132 Identities=16% Similarity=0.059 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLV-PN----ASTYSALITGQCVRKNSERAFQLYKSMIRSGC-RPN----KH 474 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~ 474 (565)
++..+...+...|++++|...+++..+.... .+ ...+..+...+...|++++|.+.+++.++..- ..+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555555566666666555554332100 01 13456666666777777777777776654210 011 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 475 IFEMLMSTFCQNEDFDRAAEVLLEMLEK----CMA-PDSIILSELYSGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 536 (565)
++..+...+...|++++|...+++..+. +.. .....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666677777788888888887776543 111 1124566777788888888888888887654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=5.5e-05 Score=60.30 Aligned_cols=85 Identities=14% Similarity=0.006 Sum_probs=33.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 448 QCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELA 527 (565)
Q Consensus 448 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 527 (565)
+.+.|++++|+..++++++.. +.+...|..+..++...|++++|+..++++++... -+...+..+..++...|++++|
T Consensus 27 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~~~~A 104 (121)
T 1hxi_A 27 MLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNANAA 104 (121)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 334444444444444444332 22333344444444444444444444444443311 1233333444444444444444
Q ss_pred HHHHHHH
Q 008454 528 MKLFRKM 534 (565)
Q Consensus 528 ~~~~~~m 534 (565)
...+++.
T Consensus 105 ~~~~~~a 111 (121)
T 1hxi_A 105 LASLRAW 111 (121)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.00 E-value=7.9e-05 Score=74.88 Aligned_cols=137 Identities=8% Similarity=-0.045 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008454 368 VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITG 447 (565)
Q Consensus 368 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 447 (565)
...|..+...+.+.|++++|...|++..+....... + . .+... +... -....|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~----------~-~~~~~----~~~~----~~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L----------S-EKESK----ASES----FLLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C----------C-HHHHH----HHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C----------C-hHHHH----HHHH----HHHHHHHHHHHH
Confidence 345566666667777777777777766653221110 0 0 00000 0000 002344444555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 448 QCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELA 527 (565)
Q Consensus 448 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 527 (565)
|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|+++++.. +-+...+..+..++.+.|+.+++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555442 2334445555555555555555555555554431 11233444444445544544443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.97 E-value=5.1e-05 Score=76.67 Aligned_cols=119 Identities=15% Similarity=0.034 Sum_probs=61.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008454 341 FGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTK 420 (565)
Q Consensus 341 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 420 (565)
..+.+.|++++|++.+++..+.. +.+...|..+..+|.+.|++++|...+++..+.... +...+..+..+|.+.|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 34455566666666666665542 334555566666666666666666666666655322 4555555666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 008454 421 KAAYLVKDLDKNSLVPNASTYSALITG--QCVRKNSERAFQLYK 462 (565)
Q Consensus 421 ~A~~~~~~~~~~~~~p~~~~~~~li~~--~~~~~~~~~A~~~~~ 462 (565)
+|...++++.+.... +...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666665543221 22233333333 455555555555555
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.96 E-value=5.2e-05 Score=63.43 Aligned_cols=97 Identities=15% Similarity=0.036 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNS----LVP-NASTYSALITGQCVRKNSERAFQLYKSMIRS----GCR-PNKH 474 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~-p~~~ 474 (565)
++..+...+...|++++|...+++..+.. ..+ ....+..+...+...|++++|.+.+++.++. +.. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 34444444455555555555554433210 000 1234555555666666666666666665542 100 1124
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 475 IFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
++..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456666677777777777777776654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00043 Score=55.41 Aligned_cols=60 Identities=10% Similarity=-0.022 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 441 YSALITGQCVRKNSERAFQLYKSMIRSGCRPN---KHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 441 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
+..+..++...|++++|...|+++++.. +.+ ...+..+..++...|++++|...|+++++
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444431 111 23334444444444444444444444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00026 Score=56.70 Aligned_cols=62 Identities=13% Similarity=-0.002 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPI---IESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
.++..+..++.+.|++++|+..|+++.+.... + ..++..+..++...|++++|...|+.+.+
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555555555543322 1 34444555555555555555555555544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00011 Score=73.91 Aligned_cols=158 Identities=10% Similarity=-0.041 Sum_probs=85.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 008454 312 GLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLY 391 (565)
Q Consensus 312 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 391 (565)
+++++|...++...+.. +-....|..+...+.+.|++++|+..|++..+.. |+...+ . .+...
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~----------~-~~~~~--- 310 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL----------S-EKESK--- 310 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC----------C-HHHHH---
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC----------C-hHHHH---
Confidence 34455555444333221 1146678888999999999999999999988742 221000 0 00000
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008454 392 EEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRP 471 (565)
Q Consensus 392 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 471 (565)
+... .....|..+..+|.+.|++++|+..++++.+.... +...|..+..+|...|++++|+..|+++++.. +-
T Consensus 311 -~~~~----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~ 383 (457)
T 1kt0_A 311 -ASES----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQ 383 (457)
T ss_dssp -HHHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred -HHHH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 0000 01244555566666666666666666666554332 45556666666666666666666666666542 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 008454 472 NKHIFEMLMSTFCQNEDFDRAA 493 (565)
Q Consensus 472 ~~~~~~~li~~~~~~g~~~~A~ 493 (565)
+...+..+..++.+.++.+++.
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00013 Score=70.84 Aligned_cols=139 Identities=15% Similarity=0.059 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008454 369 VTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQ 448 (565)
Q Consensus 369 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 448 (565)
..+..+...+.+.|++++|...|++..+.- +.. ......+++. +.. .-+...|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~-------~~~-~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGA-------KLQ-PVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHG-------GGH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHH-------HHH-HHHHHHHHHHHHHH
Confidence 445666666777777777777777666420 000 0000000000 010 01344566677777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 449 CVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAM 528 (565)
Q Consensus 449 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 528 (565)
.+.|++++|++.++++++.. +.+...|..+..++...|++++|...|+++++.. +.+...+..+...+...++.+++.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777653 3456667777777777777777777777777653 224556666666666666665554
Q ss_pred H
Q 008454 529 K 529 (565)
Q Consensus 529 ~ 529 (565)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00066 Score=69.87 Aligned_cols=174 Identities=10% Similarity=-0.010 Sum_probs=128.1
Q ss_pred CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 008454 207 KKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSER----------VDIALGFYKEMRRNRISPNVYTLNMVMHAFCKL 276 (565)
Q Consensus 207 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 276 (565)
...++|++.++++...+.. +..+|+.--..+...++ ++++++.++.+.+...+ +..+|+.-.-.+.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 3456778999998887755 67788877777777666 88888888888876533 677787777777778
Q ss_pred C--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-------
Q 008454 277 G--IIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKG-LLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKK------- 346 (565)
Q Consensus 277 g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~------- 346 (565)
| +++++++.++++.+.... +..+|+.-...+.+.| .++++++.++++.+..+. |..+|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 8 668888888888887654 7888888777777778 788888888888876543 777787777666653
Q ss_pred -------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 008454 347 -------GKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSE 385 (565)
Q Consensus 347 -------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 385 (565)
+.++++++.+++..... +-|...|..+...+.+.++.+
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 45678888887777654 456667777666666666533
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.87 E-value=4e-05 Score=77.47 Aligned_cols=120 Identities=12% Similarity=0.062 Sum_probs=64.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008454 376 NGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSE 455 (565)
Q Consensus 376 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 455 (565)
..+.+.|++++|.+.+++..+.... +...|..+..+|.+.|++++|...+++..+.... +...|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 3445566666666666666654322 4556666666666666666666666666655332 4555666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 008454 456 RAFQLYKSMIRSGCRPNKHIFEMLMST--FCQNEDFDRAAEVLLE 498 (565)
Q Consensus 456 ~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~ 498 (565)
+|.+.|+++++.. +-+...+..+..+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 6666666666542 2222333333333 5555666666555543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00022 Score=69.34 Aligned_cols=140 Identities=11% Similarity=-0.025 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 333 VITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILG 412 (565)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 412 (565)
...+..+...+.+.|++++|++.|++..+.- +.. ......+.+. +. ...+..+|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~-------~~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGA-------KL-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHG-------GG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHH-------HH-HHHHHHHHHHHHHH
Confidence 5668888899999999999999999887620 000 0001111111 00 01134566777777
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 413 LCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRA 492 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 492 (565)
|.+.|++++|...++++.+.... +...|..+..+|...|++++|++.|+++++.. +.+...+..+..++...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777765433 56677777777777788888888777777753 33556666666666666665555
Q ss_pred HH
Q 008454 493 AE 494 (565)
Q Consensus 493 ~~ 494 (565)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00025 Score=59.72 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 439 STYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 439 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
..|..+..+|.+.|++++|+..++.+++.. +.+...|..+..++...|++++|...|++.++.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 456667777777777777777777777764 445667777777777777777777777777765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0013 Score=67.69 Aligned_cols=175 Identities=5% Similarity=-0.088 Sum_probs=139.1
Q ss_pred CCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCC
Q 008454 154 RKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKK----------FRNATDTFCQMRDYG 223 (565)
Q Consensus 154 ~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~ 223 (565)
..-++|.+.+++++.. .|.+..+|+.--.++...|+ ++++++.++.+.+.+
T Consensus 43 ~~~eeal~~~~~~l~~-------------------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~ 103 (567)
T 1dce_A 43 ELDESVLELTSQILGA-------------------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 103 (567)
T ss_dssp CCSHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHH-------------------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC
Confidence 3445678888888776 44566677777677776676 999999999999988
Q ss_pred CCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHH
Q 008454 224 FLPIIESCNKFLSSLLDSE--RVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLG-IIERAVEVFKNMESMGFIPSVTT 300 (565)
Q Consensus 224 ~~p~~~~~~~ll~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~ 300 (565)
.+ +..+|+.-.-.+.+.+ +++++++.++.+.+... -|..+|+.-...+.+.| .++++++.++++.+..+. |..+
T Consensus 104 pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~sa 180 (567)
T 1dce_A 104 PK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSS 180 (567)
T ss_dssp TT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHH
T ss_pred CC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccH
Confidence 66 8899999999999999 67999999999998754 38888988888888889 899999999999987655 8888
Q ss_pred HHHHHHHHHhc--------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008454 301 YNTLISGHCNK--------------GLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHE 351 (565)
Q Consensus 301 ~~~li~~~~~~--------------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 351 (565)
|+.....+.+. +.++++++.+++...... -+..+|.-+-..+.+.++.++
T Consensus 181 W~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 181 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 98877777663 457889999988887643 377888877777777666433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.82 E-value=4.6e-05 Score=60.31 Aligned_cols=61 Identities=15% Similarity=0.013 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 405 TYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 405 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 466 (565)
.+..+..+|...|++++|...|+++.+.... +...+..+..++...|++++|+..+++.++
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444333222 233344444444444444444444444433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.76 E-value=6.5e-05 Score=59.40 Aligned_cols=86 Identities=12% Similarity=-0.009 Sum_probs=59.1
Q ss_pred cCChHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008454 206 RKKFRNATDTFCQMRDYGF--LPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAV 283 (565)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 283 (565)
.|++++|+..|++..+.+. +.+..++..+...+...|++++|+..|++..+... -+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence 4777888888888877541 22456777777788888888888888888776542 25667777777777888888888
Q ss_pred HHHHHHHhC
Q 008454 284 EVFKNMESM 292 (565)
Q Consensus 284 ~~~~~m~~~ 292 (565)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 887776654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00044 Score=58.15 Aligned_cols=102 Identities=15% Similarity=0.112 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-------C----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRS-------G----------CRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
.+......+.+.|++++|+..|.+.++. . -+.+...|..+..++.+.|++++|...++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444555555666666666666655543 0 0223467888999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 008454 503 CMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGF 544 (565)
Q Consensus 503 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 544 (565)
. +.+...|..+..+|...|++++|...|++..+. .|+..
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 4 346788999999999999999999999999776 45544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00087 Score=55.37 Aligned_cols=108 Identities=16% Similarity=0.095 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 008454 441 YSALITGQCVRKNSERAFQLYKSMIRSGCRPN--------K-----HIFEMLMSTFCQNEDFDRAAEVLLEMLEK----- 502 (565)
Q Consensus 441 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--------~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 502 (565)
+......+.+.|++++|+..|++.++.. |+ . ..|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 3444455566666666666666666542 22 2 27777777888888888888888887764
Q ss_pred CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhhHHHHH
Q 008454 503 CMAPD-SIIL----SELYSGLHHCGKDELAMKLFRKMEI-----RGLLPKGFDKLRTI 550 (565)
Q Consensus 503 ~~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ll 550 (565)
.+.|+ ...| .....++...|++++|+..|++..+ .|+.+........+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 11444 3466 7788888888888888888888754 35555544444333
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00013 Score=70.12 Aligned_cols=148 Identities=9% Similarity=-0.031 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008454 298 VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLING 377 (565)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 377 (565)
...+..+...+.+.|++++|...|++.... .|+... +...|+++++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 555666777777788888888888877664 233221 112233333332221 1255666666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHH
Q 008454 378 YGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITG-QCVRKNSER 456 (565)
Q Consensus 378 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~~~~~~~~ 456 (565)
|.+.|++++|...+++..+... .+...|..+..+|...|++++|...|+++.+.... +...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777666532 25666666777777777777777777766554221 22333333333 122344455
Q ss_pred HHHHHHHHHH
Q 008454 457 AFQLYKSMIR 466 (565)
Q Consensus 457 A~~~~~~m~~ 466 (565)
+..+|..|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 5556665554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00086 Score=55.43 Aligned_cols=97 Identities=9% Similarity=-0.060 Sum_probs=65.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSLVP------N-----ASTYSALITGQCVRKNSERAFQLYKSMIRS-----GC 469 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p------~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~~ 469 (565)
+......+.+.|++++|...|++..+..... + ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3445555556666666666666655432210 2 226777777788888888888888887765 11
Q ss_pred CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 470 RPN-KHIF----EMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 470 ~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
.|+ ...| .....++...|++++|+..|++.++.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 344 4567 78888889999999999999888764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.001 Score=54.22 Aligned_cols=110 Identities=6% Similarity=-0.014 Sum_probs=60.7
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 008454 208 KFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK----LGIIERAV 283 (565)
Q Consensus 208 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~ 283 (565)
++++|++.|++..+.|. ...+ +...|...+.+++|.+.|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~---~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE---MFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC---Hhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45555555655555541 1222 4444444455555666666655543 44555555555555 55666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 008454 284 EVFKNMESMGFIPSVTTYNTLISGHCN----KGLLSLAMKFKNLMEKNG 328 (565)
Q Consensus 284 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 328 (565)
+.|++..+.| +...+..|...|.. .++.++|..++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665553 45555555555555 566666666666666554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0013 Score=53.68 Aligned_cols=111 Identities=10% Similarity=-0.074 Sum_probs=92.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHH
Q 008454 242 ERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCN----KGLLSLA 317 (565)
Q Consensus 242 ~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a 317 (565)
+++++|++.|++..+.| .++.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788999999998887 33333 6666777788899999999998875 77888888888888 7899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCC
Q 008454 318 MKFKNLMEKNGIQPNVITFNTLIFGFCK----KGKLHEANRIFSEMKATN 363 (565)
Q Consensus 318 ~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 363 (565)
.+++++..+.| +...+..|...|.. .+++++|.++|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999999875 67788888888888 889999999999998876
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00014 Score=69.85 Aligned_cols=149 Identities=13% Similarity=-0.007 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008454 368 VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITG 447 (565)
Q Consensus 368 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 447 (565)
...+..+...+.+.|++++|...|++..+. .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 556777888888999999999999998874 233321 122333333332221 1367788888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHH
Q 008454 448 QCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSG-LHHCGKDEL 526 (565)
Q Consensus 448 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~ 526 (565)
|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++++... -+...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999988864 45678888889999999999999999998876522 134445555444 334566778
Q ss_pred HHHHHHHHHHC
Q 008454 527 AMKLFRKMEIR 537 (565)
Q Consensus 527 A~~~~~~m~~~ 537 (565)
+..+|++|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 88888888644
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00033 Score=70.35 Aligned_cols=125 Identities=9% Similarity=-0.055 Sum_probs=74.3
Q ss_pred HHHcCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHH
Q 008454 413 LCKEGKTKKAAYLVKDLDKN---SLVP----NASTYSALITGQCVRKNSERAFQLYKSMIRS-----G-CRPN-KHIFEM 478 (565)
Q Consensus 413 ~~~~g~~~~A~~~~~~~~~~---~~~p----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~ 478 (565)
+...|++++|..++++..+. -+.+ ...+++.|...|...|++++|..++++.++. | -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566666666666655331 1111 1235677777777777777777777666542 2 0122 345677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 479 LMSTFCQNEDFDRAAEVLLEMLEK-----CMA-PD-SIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 479 li~~~~~~g~~~~A~~~~~~~~~~-----~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
|...|...|++++|..+++++++. |.. |+ ..+.+.+..++...|++++|..+|+++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766532 211 11 224455566666777788888888777653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00056 Score=53.57 Aligned_cols=67 Identities=16% Similarity=0.019 Sum_probs=51.8
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
.+.++..+..+...|...|++++|+..|++..+.+.. +...|..+...+...|++++|...|+...+
T Consensus 15 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 15 GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456777888888888888888888888888776533 567778888888888888888888887764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00011 Score=57.10 Aligned_cols=89 Identities=10% Similarity=0.045 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HHH
Q 008454 438 ASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPD-------SII 510 (565)
Q Consensus 438 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~ 510 (565)
...+..+...+...|++++|++.|++.++.. +.+...+..+..++...|++++|...++++++. .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 4455666666667777777777777776653 445666666677777777777777777777664 233 334
Q ss_pred HHHHHHHHHhcCCHHHHHH
Q 008454 511 LSELYSGLHHCGKDELAMK 529 (565)
Q Consensus 511 ~~~li~~~~~~g~~~~A~~ 529 (565)
+..+..++...|+.++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHhHhhhHh
Confidence 4444444544444444433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00073 Score=52.90 Aligned_cols=78 Identities=10% Similarity=-0.029 Sum_probs=42.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 422 AAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 422 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
|...|++..+.... +...+..+...+...|++++|+..|++.++.. +.+...|..+..++...|++++|...|++.++
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445554443322 44555555555556666666666666555543 33445555555556666666666666655544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00022 Score=55.27 Aligned_cols=90 Identities=10% Similarity=-0.047 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC------HHHHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPN------VYTLNM 268 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~------~~~~~~ 268 (565)
.+..+...+...|++++|++.|++..+.... +...+..+..++...|++++|+..|++..+.... + ...+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHH
Confidence 3444455555555555555555555444322 4455555555555555555555555555443211 1 333444
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 008454 269 VMHAFCKLGIIERAVEVF 286 (565)
Q Consensus 269 li~~~~~~g~~~~a~~~~ 286 (565)
+..++...|+.+.|.+.+
T Consensus 84 ~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHhHhhhHhHH
Confidence 444444555544444333
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00077 Score=67.70 Aligned_cols=125 Identities=12% Similarity=-0.032 Sum_probs=75.6
Q ss_pred HHhcCChHHHHHHHHHHHHC-----CC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCC-CC-HHHHHH
Q 008454 378 YGQVGNSEMGASLYEEMLRN-----GI-KV-DILTYNALILGLCKEGKTKKAAYLVKDLDK-----NSLV-PN-ASTYSA 443 (565)
Q Consensus 378 ~~~~g~~~~A~~~~~~m~~~-----~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~-p~-~~~~~~ 443 (565)
+...|++++|..++++..+. |. .| ...+++.|...|...|++++|..++++..+ .|.. |+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566677776666665532 11 11 234566777777777777777777666542 1211 11 235777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 444 LITGQCVRKNSERAFQLYKSMIRS---GCRPN----KHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 444 li~~~~~~~~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
|...|...|++++|..+++++++. -+.|+ ..+.+.+..++...+.+++|+.+++++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777778877777777776642 01122 234556666677777888888888877653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0022 Score=47.27 Aligned_cols=81 Identities=12% Similarity=0.081 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008454 193 PLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHA 272 (565)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 272 (565)
...+..+...+...|++++|+..|++..+.... +...+..+...+...|++++|...|++..+.. +.+...+..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344555556666666666666666666554322 45556666666666666666666666655532 1234455554444
Q ss_pred HHH
Q 008454 273 FCK 275 (565)
Q Consensus 273 ~~~ 275 (565)
+.+
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0032 Score=46.34 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLH 519 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 519 (565)
.+..+...+...|++++|+..+++.++.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+...+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44445555555555555555555555542 2344455555555555555666655555555542 123344444444433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00084 Score=55.35 Aligned_cols=59 Identities=10% Similarity=0.196 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008454 454 SERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQN-----------EDFDRAAEVLLEMLEKCMAPDSIILSELY 515 (565)
Q Consensus 454 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~li 515 (565)
+++|+..|++.++.. +-+..+|..+..+|... |++++|.+.|+++++. .|+...|...+
T Consensus 62 ~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 62 IQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 346666666666553 33445556666666554 3677777777777663 45544444333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0012 Score=50.29 Aligned_cols=67 Identities=12% Similarity=0.030 Sum_probs=55.4
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
.|.++.++..+...|...|++++|+..|++..+.+.. +..+|..+..+|...|++++|.+.|++..+
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3457788888999999999999999999999887644 677888899999999999999999888764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0017 Score=53.56 Aligned_cols=108 Identities=6% Similarity=-0.052 Sum_probs=55.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 345 KKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAY 424 (565)
Q Consensus 345 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 424 (565)
+.+.+++|.+.++...+.. +.+...|..+..++...++++.+...+ +.+++|+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al-------------------------~~~~eAi~ 67 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAK-------------------------QMIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHH-------------------------HHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhH-------------------------hHHHHHHH
Confidence 3445556666666555543 345555555555555554433111100 01335555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008454 425 LVKDLDKNSLVPNASTYSALITGQCVR-----------KNSERAFQLYKSMIRSGCRPNKHIFEMLMS 481 (565)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~li~~~~~~-----------~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 481 (565)
.|++..+.+.. +...|..+..+|... |++++|++.|+++++. .|+...|...+.
T Consensus 68 ~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 68 KFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 55555554332 444555555555444 4677777777777775 465555544433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0049 Score=46.71 Aligned_cols=67 Identities=13% Similarity=0.074 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 008454 137 SLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTF 216 (565)
Q Consensus 137 ~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 216 (565)
+.+...+..+..++...|++++|...++++++. .+.++.+|..+..+|...|++++|++.|
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 64 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVET-------------------DPDYVGTYYHLGKLYERLDRTDDAIDTY 64 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------STTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 357788999999999999999999999999987 4557789999999999999999999999
Q ss_pred HHHHHC
Q 008454 217 CQMRDY 222 (565)
Q Consensus 217 ~~~~~~ 222 (565)
++..+.
T Consensus 65 ~~al~l 70 (100)
T 3ma5_A 65 AQGIEV 70 (100)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998763
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.091 Score=56.68 Aligned_cols=126 Identities=12% Similarity=0.054 Sum_probs=68.8
Q ss_pred HcCCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 008454 239 LDSERVDIALG-FYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLA 317 (565)
Q Consensus 239 ~~~~~~~~A~~-~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 317 (565)
...+++++|.+ ++..+ ++......++..+.+.|..++|+++.++-. .-.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence 34566666655 43111 112223556666667777777765553111 112334556777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 008454 318 MKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRN 397 (565)
Q Consensus 318 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 397 (565)
+++.+.+ .+...|..+...+.+.|+++.|.+.|..+.. |..+...+...|+.+...++-+.....
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7765432 2566777777777777777777777776642 233444444556555555444444433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.1 Score=56.27 Aligned_cols=99 Identities=17% Similarity=0.179 Sum_probs=45.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 379 GQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAF 458 (565)
Q Consensus 379 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 458 (565)
...|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence 3445555555543322 2445556666666666666666666655432 333333344445544444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008454 459 QLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLE 498 (565)
Q Consensus 459 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (565)
++-+.+...|- ++....+|.+.|++++|.+++.+
T Consensus 728 ~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 728 TLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444333321 12222334444555555554433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.058 Score=51.13 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008454 437 NASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILS 512 (565)
Q Consensus 437 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 512 (565)
+...|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.++++... .|...+|.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 55566666655555677777777777777664 56666666666666677777777777666664 34444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.22 Score=47.22 Aligned_cols=72 Identities=15% Similarity=0.004 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008454 296 PSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTY 371 (565)
Q Consensus 296 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 371 (565)
.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 355556555555555566666666666666653 45555555556666666666666666666554 3444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.013 Score=43.91 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=31.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 446 TGQCVRKNSERAFQLYKSMIRSGCRPNKH-IFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
..+...|++++|++.++++++.. +.+.. .+..+..++...|++++|...|+++++.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455566666666666665542 23344 5555555666666666666666666554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0094 Score=58.76 Aligned_cols=85 Identities=9% Similarity=0.033 Sum_probs=50.5
Q ss_pred cCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCCH-HHHHHHHH
Q 008454 451 RKNSERAFQLYKSMIRS---GCRPN----KHIFEMLMSTFCQNEDFDRAAEVLLEMLEK-----C-MAPDS-IILSELYS 516 (565)
Q Consensus 451 ~~~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~~~~li~ 516 (565)
.|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|..+++++++. | -.|+. .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666666666665542 11122 345666777777777777777777666532 1 12222 35677777
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 008454 517 GLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 517 ~~~~~g~~~~A~~~~~~m~ 535 (565)
.|...|++++|..++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 7777777777777777654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.024 Score=55.86 Aligned_cols=88 Identities=15% Similarity=0.033 Sum_probs=51.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCCH-HHHHH
Q 008454 448 QCVRKNSERAFQLYKSMIRSG---CRPN----KHIFEMLMSTFCQNEDFDRAAEVLLEMLEK-----C-MAPDS-IILSE 513 (565)
Q Consensus 448 ~~~~~~~~~A~~~~~~m~~~~---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~~-~~~~~ 513 (565)
+...|++++|+.++++.++.. +.|+ ..+++.+..+|...|++++|+.+++++++. | ..|+. .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 445566666666666666431 1121 345666666677777777777776666432 1 11222 35666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 008454 514 LYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 514 li~~~~~~g~~~~A~~~~~~m~ 535 (565)
|...|...|++++|..++++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 6777777777777777766654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.012 Score=44.07 Aligned_cols=59 Identities=10% Similarity=0.001 Sum_probs=44.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 008454 199 LFKTYAHRKKFRNATDTFCQMRDYGFLPIIE-SCNKFLSSLLDSERVDIALGFYKEMRRNR 258 (565)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 258 (565)
....+.+.|++++|++.|+++.+.... +.. .+..+...+...|++++|...|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455677778888888888888776533 566 77788888888888888888888877653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.046 Score=40.60 Aligned_cols=68 Identities=9% Similarity=-0.099 Sum_probs=53.7
Q ss_pred CCChHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 008454 190 DSSPLVFDLLFKTYAHRKK---FRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNR 258 (565)
Q Consensus 190 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 258 (565)
+.++..+..+..++...++ .++|..+|++..+.+.. ++.+...+...+.+.|++++|+..|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4577777788887765554 68888888888887654 77888888888888888888888888888764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.057 Score=40.09 Aligned_cols=70 Identities=16% Similarity=0.072 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHhCCC---chhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHH
Q 008454 137 SLTLETHSIVLHILTKNRK---FKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNAT 213 (565)
Q Consensus 137 ~~~~~~~~~l~~~l~~~~~---~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 213 (565)
+.+.+.+..+..++...++ .++|..++++.++. .+.++.+...+...+.+.|++++|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~-------------------dp~~~rA~~~lg~~~~~~g~y~~Ai 63 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL-------------------EPYNEAALSLIANDHFISFRFQEAI 63 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-------------------CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3577888888888875554 79999999999987 5678889999999999999999999
Q ss_pred HHHHHHHHCCCC
Q 008454 214 DTFCQMRDYGFL 225 (565)
Q Consensus 214 ~~~~~~~~~~~~ 225 (565)
..|+++.+.+..
T Consensus 64 ~~w~~~l~~~p~ 75 (93)
T 3bee_A 64 DTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHTCCCT
T ss_pred HHHHHHHhhCCC
Confidence 999999987643
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.029 Score=55.29 Aligned_cols=86 Identities=8% Similarity=0.014 Sum_probs=58.2
Q ss_pred cCCHHHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHH
Q 008454 416 EGKTKKAAYLVKDLDK---NSLVPN----ASTYSALITGQCVRKNSERAFQLYKSMIRS-----G-CRPN-KHIFEMLMS 481 (565)
Q Consensus 416 ~g~~~~A~~~~~~~~~---~~~~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~-~~p~-~~~~~~li~ 481 (565)
.|++++|..++++..+ .-+.|+ ..+++.|..+|...|++++|+.+++++++. | -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4667777777776543 212222 346777888888888888888888777652 2 1222 356788888
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 008454 482 TFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 482 ~~~~~g~~~~A~~~~~~~~~ 501 (565)
.|...|++++|..+++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888887754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.059 Score=53.10 Aligned_cols=92 Identities=11% Similarity=-0.030 Sum_probs=67.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHH
Q 008454 410 ILGLCKEGKTKKAAYLVKDLDKNS---LVPN----ASTYSALITGQCVRKNSERAFQLYKSMIRS-----G-CRPN-KHI 475 (565)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~---~~p~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~-~~p~-~~~ 475 (565)
+..+.+.|++++|..++++..+.. +.|+ ..+++.|..+|...|++++|+.+++++++. | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444557788888888888876431 2222 346888888898999999999988887752 2 1222 356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 476 FEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 476 ~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
++.|...|...|++++|..+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888899999999999999888764
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.51 Score=37.04 Aligned_cols=61 Identities=20% Similarity=0.130 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008454 407 NALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSG 468 (565)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 468 (565)
...++.+...|+.++-.+++.++.. +..|++...-.+..+|.+.|+..+|.+++.++-++|
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3344444555555555555555322 123445555555555555555555555555555544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.091 Score=42.73 Aligned_cols=83 Identities=11% Similarity=0.087 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 008454 418 KTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRK---NSERAFQLYKSMIRSGCRP--NKHIFEMLMSTFCQNEDFDRA 492 (565)
Q Consensus 418 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A 492 (565)
....+.+.|.+..+.+. ++..+.-.+..++++.+ +.++++.++++..+.. .| +...+-.+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 34556666666655554 46666666666777766 5557777777777753 23 234445555566777777777
Q ss_pred HHHHHHHHHc
Q 008454 493 AEVLLEMLEK 502 (565)
Q Consensus 493 ~~~~~~~~~~ 502 (565)
.++++.+++.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777777764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.18 E-value=1.2 Score=37.19 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=22.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008454 309 CNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEM 359 (565)
Q Consensus 309 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 359 (565)
...|+++.|.++.+.+ -+...|..|.+.....|+++-|.+.|...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555554443 13445555555555555555555555444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.16 Score=38.42 Aligned_cols=75 Identities=12% Similarity=-0.035 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 138 LTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFC 217 (565)
Q Consensus 138 ~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (565)
-+...+..+...+...+++..|..+++..++....... .....+.++..|..+|.+.|+++.|+..++
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~------------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~ 70 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI------------STIDKVSVLDYLSYAVYQQGDLDKALLLTK 70 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC------------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC------------CcccHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 46678889999999999999999999998875110000 012356778889999999999999999999
Q ss_pred HHHHCCC
Q 008454 218 QMRDYGF 224 (565)
Q Consensus 218 ~~~~~~~ 224 (565)
++.+..+
T Consensus 71 ~al~l~P 77 (104)
T 2v5f_A 71 KLLELDP 77 (104)
T ss_dssp HHHHHCT
T ss_pred HHHhcCC
Confidence 9987653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.19 Score=40.84 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 008454 385 EMGASLYEEMLRNGIKVDILTYNALILGLCKEG---KTKKAAYLVKDLDKNSLVP--NASTYSALITGQCVRKNSERAFQ 459 (565)
Q Consensus 385 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~A~~ 459 (565)
..+.+.|.+..+.+. ++..+...+..++++.+ +.+++..+|+++.+.+ .| +...+-.|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344555555555444 46666666777777766 4557777777766643 12 23344555556677777777777
Q ss_pred HHHHHHHc
Q 008454 460 LYKSMIRS 467 (565)
Q Consensus 460 ~~~~m~~~ 467 (565)
.++.+++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77777765
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.31 Score=44.26 Aligned_cols=78 Identities=14% Similarity=0.064 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcC-CChHHHHHHHHHHHHCCCC--CCH
Q 008454 192 SPLVFDLLFKTYAHR-----KKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDS-ERVDIALGFYKEMRRNRIS--PNV 263 (565)
Q Consensus 192 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-~~~~~A~~~~~~m~~~~~~--p~~ 263 (565)
+...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.+++.+.+++....... |+.
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSC
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCCh
Confidence 345788888888884 89999999999998876433477777888888884 8889999999998887655 665
Q ss_pred HHHHHH
Q 008454 264 YTLNMV 269 (565)
Q Consensus 264 ~~~~~l 269 (565)
...+.+
T Consensus 278 ~lan~~ 283 (301)
T 3u64_A 278 KLLVIL 283 (301)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 554443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.33 Score=36.63 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 466 (565)
.+..|..++.+.|+++.|..+++++.+
T Consensus 48 i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 48 VLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344444444444444444444444443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.37 Score=43.82 Aligned_cols=107 Identities=14% Similarity=0.130 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCH
Q 008454 419 TKKAAYLVKDLDKNSLVPN---ASTYSALITGQCV-----RKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQN-EDF 489 (565)
Q Consensus 419 ~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~ 489 (565)
...|..++++..+. .|+ ...|..+...|.. .|+.++|.+.|++.++.+-.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777764 344 4567777777777 388888888888888764111366777777777774 888
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 490 DRAAEVLLEMLEKCMA--PDSIILSELYSGLHHCGKDELAMKLFRKME 535 (565)
Q Consensus 490 ~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 535 (565)
+++.+.+++.+..... |+....+.+ .-++|..++.++.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~~ 296 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHhH
Confidence 8888888888876555 554444433 3355666655543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.50 E-value=1.8 Score=36.07 Aligned_cols=100 Identities=13% Similarity=0.133 Sum_probs=61.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 379 GQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAF 458 (565)
Q Consensus 379 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 458 (565)
...|+++.|.++.+++ -+...|..|.......|+++-|.+.|..... +..+.-.|.-.|+.+...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 4567777777776655 2566777777777777777777777776542 344444455566666655
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 459 QLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEM 499 (565)
Q Consensus 459 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 499 (565)
++-+.....|- ++.....+...|+++++.++|.+.
T Consensus 81 kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 55555544431 344444555677777777776443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.18 E-value=0.92 Score=36.44 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=41.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008454 382 GNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALIT 446 (565)
Q Consensus 382 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 446 (565)
+|.++|.++|+.+.+.+-.. ...|......-.+.|++..|.+++......+.+| .......++
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 67778888888776553333 6666666666677888888888888877766553 333444433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.01 E-value=1.8 Score=34.08 Aligned_cols=140 Identities=14% Similarity=0.087 Sum_probs=90.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 379 GQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAF 458 (565)
Q Consensus 379 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 458 (565)
.-.|..++..++..+.... .+..-||.+|--....-+-+-..++++.+-+. .|. ...|+.....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 3457777777777777664 25566666666555555555555555554331 121 1234444444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008454 459 QLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRG 538 (565)
Q Consensus 459 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 538 (565)
..+-.+ ..+....+..+..+...|+-++-.+++..+.. +.+|+....-.+..+|.+.|+..+|-+++.+.-++|
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 444333 23445566777778888888888888888644 356778888888888888888888888888888888
Q ss_pred CC
Q 008454 539 LL 540 (565)
Q Consensus 539 ~~ 540 (565)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 64
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.81 E-value=0.46 Score=38.16 Aligned_cols=105 Identities=11% Similarity=0.099 Sum_probs=56.3
Q ss_pred CCCChHHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCcCH-HHHHHHHHH------HHcCCChHHHHHHHHHHH
Q 008454 189 CDSSPLVFDLLFKTYAHRKKF------RNATDTFCQMRDYGFLPII-ESCNKFLSS------LLDSERVDIALGFYKEMR 255 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~~~~p~~-~~~~~ll~~------~~~~~~~~~A~~~~~~m~ 255 (565)
.+.++.+|-..+...-+.|++ ++.+++|++.... ++|+. ..|...+.. +...++.++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 455777777777777777887 7777777777653 33321 111111111 112256666666666665
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008454 256 RNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFI 295 (565)
Q Consensus 256 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 295 (565)
..+-. =...|......=.++|++..|.+++...+..+.+
T Consensus 88 ~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 88 ANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 43211 1444444444445566666666666666665544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.57 E-value=9.4 Score=41.01 Aligned_cols=150 Identities=14% Similarity=0.133 Sum_probs=64.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHHCCCCCCHHH-H---HHHHHHHHHc
Q 008454 343 FCKKGKLHEANRIFSEMKATNVSPNVVTYNTLIN--GYGQVGNSEMGASLYEEMLRNGIKVDILT-Y---NALILGLCKE 416 (565)
Q Consensus 343 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~---~~li~~~~~~ 416 (565)
++..|+-+....++..+.+.. +......+.. ++...|+.+.+..+.+.+... .+..+ | .++.-+|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTS
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCC
Confidence 334455555555555544421 2222222222 233456666666666655543 12211 1 1233445555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHH
Q 008454 417 GKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDF-DRAAEV 495 (565)
Q Consensus 417 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~ 495 (565)
|+.....+++..+.... ..+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++...
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 66555555666555431 1122222223333334455455555555444432 33333222333333333332 445555
Q ss_pred HHHHH
Q 008454 496 LLEML 500 (565)
Q Consensus 496 ~~~~~ 500 (565)
+..+.
T Consensus 652 L~~L~ 656 (963)
T 4ady_A 652 LDPLT 656 (963)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 55554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.33 E-value=3.9 Score=45.83 Aligned_cols=47 Identities=11% Similarity=0.170 Sum_probs=35.0
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhh
Q 008454 116 VQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILD 168 (565)
Q Consensus 116 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~ 168 (565)
..+.++.+.++..|... +......+..++...|++++|...|++...
T Consensus 824 ~~~~~~~~~~l~~~~~~------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 824 LFKQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp HHSCTTHHHHHHHHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HhhhHHHHHHHhhhccC------CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 34567778888777543 344446778889999999999999987643
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.01 E-value=0.71 Score=36.01 Aligned_cols=22 Identities=9% Similarity=0.231 Sum_probs=10.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 008454 480 MSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 480 i~~~~~~g~~~~A~~~~~~~~~ 501 (565)
.-++.+.|++++|.++++.+++
T Consensus 81 Avg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 81 AVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444455555444444444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.97 E-value=2.9 Score=46.85 Aligned_cols=81 Identities=15% Similarity=0.183 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008454 300 TYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPN----VITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLI 375 (565)
Q Consensus 300 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 375 (565)
-|..++..+-+.|.++.+.++-....+....-+ ...|..+.+.+...|++++|...+-.+..... -......++
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 455566666666666666666555444321111 12455566666666666666666666554432 233444555
Q ss_pred HHHHhcC
Q 008454 376 NGYGQVG 382 (565)
Q Consensus 376 ~~~~~~g 382 (565)
..+|..|
T Consensus 979 ~~lce~~ 985 (1139)
T 4fhn_B 979 NQLTKQG 985 (1139)
T ss_dssp HHHHHHC
T ss_pred HHHHhCC
Confidence 5555444
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.56 E-value=8.5 Score=37.78 Aligned_cols=171 Identities=17% Similarity=0.161 Sum_probs=94.7
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCcCHHH--HHHHHHHHHcCCChHHHH--HHHHHHHH--CC-CCC-
Q 008454 191 SSPLVFDLLFKTYAHRKKFRNATDTFCQMRDY-GFLPIIES--CNKFLSSLLDSERVDIAL--GFYKEMRR--NR-ISP- 261 (565)
Q Consensus 191 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~--~~~ll~~~~~~~~~~~A~--~~~~~m~~--~~-~~p- 261 (565)
.+..+...++..|...|+++...+.+..+... |..+...+ .+.++..+......+... .+.+.+.. .| +-.
T Consensus 54 s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE 133 (445)
T 4b4t_P 54 SSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVE 133 (445)
T ss_dssp TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCC
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHH
Confidence 35667778888999999999888877766543 43222211 122223222233322211 11111100 11 111
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCC
Q 008454 262 --NVYTLNMVMHAFCKLGIIERAVEVFKNMESM--GFIPS---VTTYNTLISGHCNKGLLSLAMKFKNLMEK----NGIQ 330 (565)
Q Consensus 262 --~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~ 330 (565)
.......|...+...|++.+|.+++..+... |.... ...+..-++.|...+++..|..++.++.. ....
T Consensus 134 ~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~ 213 (445)
T 4b4t_P 134 VERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY 213 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc
Confidence 1223456677777888888888888887532 22111 34556667777888888888877776532 2122
Q ss_pred CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 331 PN--VITFNTLIFGFCKKGKLHEANRIFSEMKA 361 (565)
Q Consensus 331 ~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 361 (565)
|+ ...+...+..+...+++.+|.+.|.++..
T Consensus 214 ~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 214 ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 22 23345555666677788777777766643
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.94 E-value=0.87 Score=35.52 Aligned_cols=82 Identities=13% Similarity=0.095 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 008454 384 SEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKK---AAYLVKDLDKNSLVP--NASTYSALITGQCVRKNSERAF 458 (565)
Q Consensus 384 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~A~ 458 (565)
...+.+-|......|. ++..+-..+..++++..+... ++.+++++.+.+ .| .....-.|.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444445554444333 455666666666666665444 667777666543 12 2223444556677777777777
Q ss_pred HHHHHHHHc
Q 008454 459 QLYKSMIRS 467 (565)
Q Consensus 459 ~~~~~m~~~ 467 (565)
+.++.+++.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777775
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.22 E-value=0.98 Score=43.65 Aligned_cols=55 Identities=7% Similarity=0.012 Sum_probs=27.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 479 LMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 479 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
++..+...|+++++...++.+... -+.+...|..++.+|.+.|+..+|++.|+++
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444455555555555554443 1224445555555555555555555555544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.02 E-value=19 Score=38.69 Aligned_cols=151 Identities=14% Similarity=0.179 Sum_probs=73.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHHcCC
Q 008454 274 CKLGIIERAVEVFKNMESMGFIPSVTTYN--TLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFN---TLIFGFCKKGK 348 (565)
Q Consensus 274 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~---~li~~~~~~g~ 348 (565)
+-.|+-+....++..+.+.. +..... .+.-++...|+.+.+..+++.+.... .| ..-|. ++.-+|+..|+
T Consensus 501 vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCC
T ss_pred cccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCC
Confidence 34466666666666655431 222222 23333445677777777777766531 11 12222 23345666777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 008454 349 LHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKT-KKAAYLVK 427 (565)
Q Consensus 349 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~ 427 (565)
.....++++.+.... ..++.-...+.-++...|+.+.+.++++.+.+.+ .|.+.--..+..+....|.. .++.+++.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 766666777766542 1222222222223334566665666665555432 23333333333333333332 45666666
Q ss_pred HHHh
Q 008454 428 DLDK 431 (565)
Q Consensus 428 ~~~~ 431 (565)
.+..
T Consensus 654 ~L~~ 657 (963)
T 4ady_A 654 PLTK 657 (963)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 6654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.34 E-value=1.5 Score=45.93 Aligned_cols=127 Identities=13% Similarity=0.072 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhC------CCCC-CHH---
Q 008454 372 NTLINGYGQVGN-SEMGASLYEEMLRNGIKVDILTYNALILGLCKEG-KTKKAAYLVKDLDKN------SLVP-NAS--- 439 (565)
Q Consensus 372 ~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~------~~~p-~~~--- 439 (565)
..++..+...++ .+.|..+++++.+.....+......++..+.+.+ +--+|..++.+..+. ...+ +..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445555555555 4778888888877633222222233333333332 222455555544321 0111 110
Q ss_pred -------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 440 -------TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEM 499 (565)
Q Consensus 440 -------~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 499 (565)
....=..-+...|+++.|+++-++.+..- +-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 00111122334556666666666655542 333455666666666666666665555443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.22 E-value=15 Score=36.05 Aligned_cols=51 Identities=8% Similarity=0.089 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 242 ERVDIALGFYKEMRR-----NRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM 292 (565)
Q Consensus 242 ~~~~~A~~~~~~m~~-----~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (565)
++++.|++.+..+.+ .+..........++..|...|+++...+.+..+.+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk 85 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK 85 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 567777776655543 123334556667777777777777776666555443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.82 E-value=1.6 Score=45.81 Aligned_cols=125 Identities=14% Similarity=0.068 Sum_probs=80.8
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcC-ChHHHHHHHHHHHHC------CCCC-CHH-
Q 008454 337 NTLIFGFCKKGK-LHEANRIFSEMKATNVSPNVVTY--NTLINGYGQVG-NSEMGASLYEEMLRN------GIKV-DIL- 404 (565)
Q Consensus 337 ~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g-~~~~A~~~~~~m~~~------~~~~-~~~- 404 (565)
..++..+...|+ ++.|.++|+++.... |....+ ..++..+.+.+ +--+|.+++.+..+. ...+ +..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 445555555666 688999999998873 433332 23333333333 233566666665431 1111 111
Q ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 405 ---------TYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSM 464 (565)
Q Consensus 405 ---------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m 464 (565)
....=.+.|...|+++-|+.+-++....... +-.+|..|..+|...|+++.|+-.+..+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1222244566789999999999999875332 5779999999999999999999888775
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=89.28 E-value=1.8e-05 Score=76.20 Aligned_cols=192 Identities=13% Similarity=0.097 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008454 265 TLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFC 344 (565)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 344 (565)
.|..+|....+.|.+++-+..+....+..-.|.+ =+.|+-+|++.++..+..+++. .||..-...+.+-|.
T Consensus 85 ~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~I--DteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf 155 (624)
T 3lvg_A 85 SYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCY 155 (624)
T ss_dssp SSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTT--THHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--HHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHH
Confidence 3444444444444444444444433332212222 1245555555555444322221 234444444555555
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008454 345 KKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAY 424 (565)
Q Consensus 345 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 424 (565)
..|.++.|.-+|..+.. |..|...+.+.|++..|.+.-++ .-++.||..+..+|...+.+.-|..
T Consensus 156 ~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqi 220 (624)
T 3lvg_A 156 DEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQM 220 (624)
T ss_dssp HSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTH
T ss_pred HccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHH
Confidence 55555555444433321 22233333444444444321111 1234455555555555555544433
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008454 425 LVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQN 486 (565)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 486 (565)
.--.+.-. ++ ....++..|-..|.+++.+.+++..+... ......|+-|.-.|++-
T Consensus 221 cGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 221 CGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS
T ss_pred hcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc
Confidence 32222211 11 12234444555666666666665555332 34555666665555543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.27 E-value=2.4 Score=40.95 Aligned_cols=75 Identities=11% Similarity=0.020 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 008454 196 FDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRR-----NRISPNVYTLNMVM 270 (565)
Q Consensus 196 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~~~~~li 270 (565)
...++..+...|++.+|+..++.+...... +...|..+|.++.+.|+..+|++.|+.+.+ .|+.|...+-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 445677788889999998888888777644 778888899999999999999988888643 48888877654443
Q ss_pred H
Q 008454 271 H 271 (565)
Q Consensus 271 ~ 271 (565)
.
T Consensus 253 ~ 253 (388)
T 2ff4_A 253 R 253 (388)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.15 E-value=3.1 Score=30.67 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 421 KAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 421 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
+..+-++.+...++.|++....+.+++|.+.+++..|+++++-...+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555555555555555443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.30 E-value=20 Score=32.96 Aligned_cols=165 Identities=10% Similarity=-0.025 Sum_probs=83.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHHHHHhCCCCCCHHHHHHHHHH
Q 008454 232 NKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVE----VFKNMESMGFIPSVTTYNTLISG 307 (565)
Q Consensus 232 ~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~g~~p~~~~~~~li~~ 307 (565)
.++..-|.+.+++++|++++..-.. .+.+.|+...|-+ +++.+.+.+++++......++..
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3344455556666666665544221 2334444444333 23444455666666666656655
Q ss_pred HHhcCChh-HHHHHHHHHH----HCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008454 308 HCNKGLLS-LAMKFKNLME----KNGI--QPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQ 380 (565)
Q Consensus 308 ~~~~g~~~-~a~~~~~~m~----~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 380 (565)
+.....-+ .-.++++++. +.|- .-+...+..+...|.+.|++.+|...|- .|..-|...+..++.-+..
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHH
Confidence 54422111 1123333333 2221 2366778888888899999988888764 1111134455555554444
Q ss_pred c---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 381 V---GNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLD 430 (565)
Q Consensus 381 ~---g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 430 (565)
. |...++ |...-. .+-.|...|+...|..+++...
T Consensus 178 ~~~~~~~~e~--------------dlf~~R-aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 178 QVDDIEDSTV--------------AEFFSR-LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HTTCCCHHHH--------------HHHHHH-HHHHHHHTTBHHHHHHHHHHHH
T ss_pred hcCCCCcchH--------------HHHHHH-HHHHHHHhcCHHHHHHHHHHHH
Confidence 4 333221 122222 2233456678888887777653
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.45 E-value=9.2 Score=28.22 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008454 453 NSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELY 515 (565)
Q Consensus 453 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 515 (565)
+.-+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+.+..+ ..+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 34455566666666667777777777777777777777777777776655 223344565554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=84.45 E-value=8.2 Score=30.24 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 401 VDILTYNALILGLCKEGKT---KKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 466 (565)
|+..+--.+..++++..+. .+++.+++++.+.+..-....+-.|.-++.+.|++++|.+..+.+++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444444444332 23444444444332111122333334444445555555555444444
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.01 E-value=6.6 Score=30.72 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008454 421 KAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLM 480 (565)
Q Consensus 421 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 480 (565)
+..+-++.+...++.|++......+++|.+.+++..|+++++-...+ +.+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34444555555556666666666666666666666666666655544 233344454444
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.71 E-value=15 Score=28.73 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008454 454 SERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELY 515 (565)
Q Consensus 454 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 515 (565)
.-+..+-++.+....+.|++.+....+.+|.+.+|+..|.++|+.+..+ ..+...+|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 3455556666666677788888888888888888888888888777665 333445566554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=82.49 E-value=16 Score=28.63 Aligned_cols=69 Identities=6% Similarity=0.062 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 434 LVPNASTYSALITGQCVRKN---SERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 434 ~~p~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
..|+..+--.+..++.+..+ ..+++.++.++.+.+-.-....+-.|.-++.+.|++++|.++.+.+++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34555554445555555544 3456777777766541112344555566677777777777777777664
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.94 E-value=13 Score=30.35 Aligned_cols=122 Identities=9% Similarity=0.048 Sum_probs=67.6
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHhhcCC----CCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 143 HSIVLHILTKNRKFKSSESILRGILDSDS----FDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 143 ~~~l~~~l~~~~~~~~a~~ll~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (565)
+..-+..+...+.++.|+.+.+.++.... .-.+..- -.++..+..++...|++.+|...|++
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~--------------~~~l~~ladalf~~~eyrrA~~~y~q 88 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQK--------------YQLLVYHADSLFHDKEYRNAVSKYTM 88 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHH--------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHH--------------HHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 44456677788888888877776554310 0000000 12566788999999999999999999
Q ss_pred HHHC--CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008454 219 MRDY--GFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMES 291 (565)
Q Consensus 219 ~~~~--~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 291 (565)
..+. .+.....++..+. ....... ......+...-.-+..+|.+.|++++|+.+++.+..
T Consensus 89 ALq~~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 89 ALQQKKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 7542 1111111111110 0000000 011223455555677888899999999999887644
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=81.02 E-value=19 Score=28.58 Aligned_cols=21 Identities=10% Similarity=0.023 Sum_probs=9.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 008454 446 TGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 446 ~~~~~~~~~~~A~~~~~~m~~ 466 (565)
-++.+.|++++|.++.+.+++
T Consensus 85 vg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 85 IGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 334444444444444444444
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=80.83 E-value=34 Score=31.42 Aligned_cols=81 Identities=11% Similarity=-0.038 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008454 401 VDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVR---KNSERAFQLYKSMIRSGCRPNKHIFE 477 (565)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~ 477 (565)
-|+.....+...|.+.|++.+|...|-.- -.-+...+..++.-+... |...++-- ..-.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHH
Confidence 46778888888888888888887766411 001344455554444433 33332211 1112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 008454 478 MLMSTFCQNEDFDRAAEVLLEML 500 (565)
Q Consensus 478 ~li~~~~~~g~~~~A~~~~~~~~ 500 (565)
.++ -|.-.|+...|..+++...
T Consensus 194 aVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 194 LVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HHH-HHHHhcCHHHHHHHHHHHH
Confidence 222 2445677777777776654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.05 E-value=11 Score=30.87 Aligned_cols=28 Identities=14% Similarity=0.061 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008454 402 DILTYNALILGLCKEGKTKKAAYLVKDL 429 (565)
Q Consensus 402 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 429 (565)
+...-..+..+|.+.++.++|+.+++.+
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 3344445666666777777777666654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 565 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.22 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.22 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.19 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.17 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.17 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.14 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.03 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.02 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.99 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.95 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.59 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.57 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.54 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.46 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.4 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.4 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.39 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.37 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.35 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.3 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.25 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.1 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.08 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.08 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.05 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.01 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.93 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.92 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.87 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.77 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.76 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.73 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.72 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.7 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.64 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.63 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.6 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.58 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.57 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.57 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.56 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.42 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.4 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.4 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.28 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.95 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.75 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.74 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.17 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.13 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.11 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.22 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.97 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 89.57 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.45 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.9 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 86.39 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.07 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 80.98 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=5.4e-21 Score=187.09 Aligned_cols=383 Identities=14% Similarity=0.046 Sum_probs=318.1
Q ss_pred HHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 008454 146 VLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFL 225 (565)
Q Consensus 146 l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 225 (565)
+.+.+.+.|++++|...++++++. .|.++.++..+...|.+.|++++|++.|+++.+.+..
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~-------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 65 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ-------------------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 456677889999999999999887 5567889999999999999999999999999887644
Q ss_pred cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008454 226 PIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLI 305 (565)
Q Consensus 226 p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 305 (565)
+..+|..+...+.+.|++++|+..+....+... .+..............+....+............. .........
T Consensus 66 -~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 142 (388)
T d1w3ba_ 66 -LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLG 142 (388)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHH
T ss_pred -CHHHHHHHHHHhhhhcccccccccccccccccc-ccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 688999999999999999999999999987643 35555555666666667767766666665554333 445555566
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 008454 306 SGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSE 385 (565)
Q Consensus 306 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 385 (565)
......+....+...+....... +-+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|+++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~ 220 (388)
T d1w3ba_ 143 NLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTT
T ss_pred ccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHH
Confidence 67778888888888888877654 3367788888899999999999999999988764 446678889999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008454 386 MGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMI 465 (565)
Q Consensus 386 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 465 (565)
+|...+++....+.. +...+..+...+.+.|++++|...|+++.+.... +...|..+...+...|++++|.+.++...
T Consensus 221 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 298 (388)
T d1w3ba_ 221 RAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 999999999886543 6788888999999999999999999999887543 67789999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-Hh
Q 008454 466 RSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPK-GF 544 (565)
Q Consensus 466 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 544 (565)
... +.+...+..+...+...|++++|...++++++.. +-+..++..+..+|.+.|++++|.+.|++..+. .|+ ..
T Consensus 299 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~ 374 (388)
T d1w3ba_ 299 RLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFAD 374 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHH
T ss_pred ccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH
Confidence 874 6778889999999999999999999999998863 335778899999999999999999999998765 465 56
Q ss_pred hHHHHHhhcccCCC
Q 008454 545 DKLRTINCAPENGE 558 (565)
Q Consensus 545 ~~~~ll~~~~~~g~ 558 (565)
.+..+..++.+.||
T Consensus 375 a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 375 AYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCC
Confidence 78888888877765
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.5e-20 Score=183.96 Aligned_cols=380 Identities=12% Similarity=0.050 Sum_probs=316.6
Q ss_pred HhhcCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCCh
Q 008454 114 LKVQKDYVLSLEFFTWVQTHKPSSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSP 193 (565)
Q Consensus 114 ~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (565)
....|+++.|++.|+.+.+..| .+...+..+..++.+.|++++|...++++++. .|.++
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------------------~p~~~ 67 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-------------------NPLLA 67 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------CCCCH
Confidence 4556899999999999988765 57889999999999999999999999999887 45678
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAF 273 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 273 (565)
.++..+...|.+.|++++|++.+....+.... +...+..........+....+........... ..............
T Consensus 68 ~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 145 (388)
T d1w3ba_ 68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLL 145 (388)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccccccccccccccccc-cccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence 89999999999999999999999999887654 55556666666666666666666666655443 23455555666667
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008454 274 CKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEAN 353 (565)
Q Consensus 274 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 353 (565)
...+....+...+......... +...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~ 223 (388)
T d1w3ba_ 146 KALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAV 223 (388)
T ss_dssp HTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHH
T ss_pred cccchhhhhHHHHHHhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHH
Confidence 7888888888888887765432 67788888999999999999999999988764 236778899999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008454 354 RIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNS 433 (565)
Q Consensus 354 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 433 (565)
..++.....+ +.+...+..+...+.+.|++++|...|++..+.... +..++..+...+...|++++|...++......
T Consensus 224 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 301 (388)
T d1w3ba_ 224 AAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred HHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 9999988865 456778888999999999999999999999987543 67889999999999999999999999988764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 008454 434 LVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSE 513 (565)
Q Consensus 434 ~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 513 (565)
. .+...+..+...+...|++++|++.|++.++.. +-+..++..+..++.+.|++++|...|+++++.. +-+...|..
T Consensus 302 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~ 378 (388)
T d1w3ba_ 302 P-THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN 378 (388)
T ss_dssp T-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHH
T ss_pred C-ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3 377889999999999999999999999999863 4467889999999999999999999999998853 225678999
Q ss_pred HHHHHHhcCC
Q 008454 514 LYSGLHHCGK 523 (565)
Q Consensus 514 li~~~~~~g~ 523 (565)
+...|.+.||
T Consensus 379 lg~~~~~~~D 388 (388)
T d1w3ba_ 379 MGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHcCC
Confidence 9999988875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.1e-12 Score=124.23 Aligned_cols=228 Identities=9% Similarity=-0.032 Sum_probs=139.2
Q ss_pred HHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008454 145 IVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGF 224 (565)
Q Consensus 145 ~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 224 (565)
.....+.+.|++++|...++++++. .|.++.+|..+..+|...|++++|+..|++..+...
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~-------------------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p 84 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQ-------------------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 84 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS-------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-------------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc
Confidence 4566677889999999999988887 455778888888999999999999999998887654
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHH----------------HHHHHHHHHHcCCHHHHHHHHHH
Q 008454 225 LPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYT----------------LNMVMHAFCKLGIIERAVEVFKN 288 (565)
Q Consensus 225 ~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~----------------~~~li~~~~~~g~~~~a~~~~~~ 288 (565)
. +...|..+...+...|++++|.+.++...... |+... ....+..+...+.+.+|.+.+.+
T Consensus 85 ~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 85 D-NQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred c-cccccccccccccccccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 3 67888888888889999999999888887643 21100 01111122233444555555554
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008454 289 MESMG-FIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPN 367 (565)
Q Consensus 289 m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 367 (565)
..+.. -..+...+..+...+...|++++|...+++...... -+...|..+...|.+.|++++|.+.+++..+.. +-+
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 239 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGY 239 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHh-hcc
Confidence 44321 112344455555555555555555555555544321 234455555555555555555555555554432 223
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 368 VVTYNTLINGYGQVGNSEMGASLYEEMLR 396 (565)
Q Consensus 368 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 396 (565)
...+..+..+|.+.|++++|+..|++.++
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455555555555555555555555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.3e-12 Score=123.62 Aligned_cols=269 Identities=13% Similarity=-0.032 Sum_probs=155.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008454 234 FLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGL 313 (565)
Q Consensus 234 ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 313 (565)
....+.+.|++++|+..|+.+.+... -+..+|..+..++...|++++|...+.+..+.... +...|..+...|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccc
Confidence 34455566666666666666655432 24555666666666666666666666665554322 45555555566666666
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 314 LSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEE 393 (565)
Q Consensus 314 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 393 (565)
+++|.+.++...... |+............ ...+.......+..+...+.+.+|...+.+
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGA-------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhh-------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 666666666555432 11100000000000 000000011112223344556667777776
Q ss_pred HHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008454 394 MLRNGI-KVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPN 472 (565)
Q Consensus 394 m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 472 (565)
..+... ..+..++..+...+...|++++|...+++....... +...|..+...+...|++++|++.|+++++.. +-+
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 239 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGY 239 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hcc
Confidence 665422 345667777788888888888888888887765433 56677888888888888888888888887753 345
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------CCCCHHHHHHHHHHHHhcCCHHHH
Q 008454 473 KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKC----------MAPDSIILSELYSGLHHCGKDELA 527 (565)
Q Consensus 473 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----------~~p~~~~~~~li~~~~~~g~~~~A 527 (565)
..++..+..+|.+.|++++|...|++.++.. .......|..+-.++...|+.+.+
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6777888888888888888888888876531 111223455555566656665544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=6.3e-09 Score=97.07 Aligned_cols=217 Identities=10% Similarity=-0.022 Sum_probs=171.2
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 193 PLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSER-VDIALGFYKEMRRNRISPNVYTLNMVMH 271 (565)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~li~ 271 (565)
..+|+.+...+.+.+.+++|+++++++.+.++. +..+|+....++...|+ +++|+..++...+... -+..+|+.+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhH
Confidence 457778888899999999999999999998755 78899999999888764 8999999999987643 37889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---
Q 008454 272 AFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGK--- 348 (565)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--- 348 (565)
.+.+.|++++|++.++++.+.... +...|..+...+.+.|++++|+..++.+.+... -+...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccch
Confidence 999999999999999999987544 789999999999999999999999999998753 377788887777776655
Q ss_pred ---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH
Q 008454 349 ---LHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIK-VDILTYNALILGLCK 415 (565)
Q Consensus 349 ---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~ 415 (565)
+++|++.+....+.. +-+...|..+...+. ....+++...++...+.... .+...+..++..|..
T Consensus 199 ~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 678888888887764 456677776666554 44467777777777654332 245556666666543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=4.1e-09 Score=98.42 Aligned_cols=216 Identities=8% Similarity=0.011 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcC-ChHHHHHHHHH
Q 008454 140 LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRK-KFRNATDTFCQ 218 (565)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~ 218 (565)
.++|..+..++.+.+.+++|..+++++++. .|.+..+|+....++...| ++++|+..+++
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l-------------------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~ 103 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIEL-------------------NAANYTVWHFRRVLLKSLQKDLHEEMNYITA 103 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHH-------------------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 456777788888999999999999999998 5668889999999988876 59999999999
Q ss_pred HHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 008454 219 MRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSV 298 (565)
Q Consensus 219 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 298 (565)
..+.... +..+|+.+...+.+.|++++|++.++.+.+.. +-+...|..+...+...|++++|++.++++++.... +.
T Consensus 104 al~~~p~-~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~ 180 (315)
T d2h6fa1 104 IIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NN 180 (315)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHh-hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cH
Confidence 9987755 79999999999999999999999999998864 347899999999999999999999999999987544 78
Q ss_pred HHHHHHHHHHHhcCC------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHH
Q 008454 299 TTYNTLISGHCNKGL------LSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVS-PNVVTY 371 (565)
Q Consensus 299 ~~~~~li~~~~~~g~------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~ 371 (565)
..|+.+...+.+.+. +++|+..+....+... -+...|+.+...+. ....+++.+.++...+.... .+...+
T Consensus 181 ~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~ 258 (315)
T d2h6fa1 181 SVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLI 258 (315)
T ss_dssp HHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHH
T ss_pred HHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHH
Confidence 888887777777665 5788888888877643 36777777766554 44467777777777654322 244555
Q ss_pred HHHHHHHH
Q 008454 372 NTLINGYG 379 (565)
Q Consensus 372 ~~li~~~~ 379 (565)
..++..|.
T Consensus 259 ~~l~~~y~ 266 (315)
T d2h6fa1 259 AFLVDIYE 266 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56666554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=1.1e-08 Score=96.84 Aligned_cols=305 Identities=10% Similarity=0.002 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHCCC-CCC----HH
Q 008454 194 LVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPI----IESCNKFLSSLLDSERVDIALGFYKEMRRNRI-SPN----VY 264 (565)
Q Consensus 194 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~ 264 (565)
.........+...|++++|++++++..+.....+ ..++..+...+...|++++|+..|++..+... .++ ..
T Consensus 13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 92 (366)
T d1hz4a_ 13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 92 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 3444445556666677777766666655432211 23445555556666666666666655543110 001 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHH
Q 008454 265 TLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQP---NVITFNTLIF 341 (565)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~li~ 341 (565)
.+..+...+...|++..+...+...... ....+... ....+..+..
T Consensus 93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~-------------------------------~~~~~~~~~~~~~~~~~~la~ 141 (366)
T d1hz4a_ 93 SLIQQSEILFAQGFLQTAWETQEKAFQL-------------------------------INEQHLEQLPMHEFLVRIRAQ 141 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------HHHTTCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------hHhcccchhhHHHHHHHHHHH
Confidence 2233333444444444444444433211 00111110 1122333444
Q ss_pred HHHHcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC--CHHHHHHHHH
Q 008454 342 GFCKKGKLHEANRIFSEMKATN----VSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRN----GIKV--DILTYNALIL 411 (565)
Q Consensus 342 ~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~--~~~~~~~li~ 411 (565)
.+...|+++.+...+....... .......+......+...++...+...+.+.... +..+ ....+..+..
T Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 221 (366)
T d1hz4a_ 142 LLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 221 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH
Confidence 5555555555555555544321 1111233333444455555555555555544321 1100 1223444555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHH
Q 008454 412 GLCKEGKTKKAAYLVKDLDKNSLVP---NASTYSALITGQCVRKNSERAFQLYKSMIRS----GCRPN-KHIFEMLMSTF 483 (565)
Q Consensus 412 ~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~ 483 (565)
.+...|+.++|...++...+..... ....+..+...+...|++++|...++.++.. +..|+ ..++..+...+
T Consensus 222 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 301 (366)
T d1hz4a_ 222 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 301 (366)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHH
Confidence 5666667777766666654432221 2234455666667777777777777666532 22222 34556666677
Q ss_pred HhcCCHHHHHHHHHHHHHc----CCC----CCHHHHHHHHHHHHhcCCHHHHHH
Q 008454 484 CQNEDFDRAAEVLLEMLEK----CMA----PDSIILSELYSGLHHCGKDELAMK 529 (565)
Q Consensus 484 ~~~g~~~~A~~~~~~~~~~----~~~----p~~~~~~~li~~~~~~g~~~~A~~ 529 (565)
...|++++|.+.+++.++. |.. -....+..++..+...++.+++.+
T Consensus 302 ~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 302 WQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 7777777777777766542 111 011233445555555666555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.17 E-value=1e-08 Score=95.47 Aligned_cols=189 Identities=12% Similarity=0.093 Sum_probs=148.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008454 347 GKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLV 426 (565)
Q Consensus 347 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 426 (565)
+..++|..+|++..+...+.+...|...+....+.|+.+.|..+|+++.+........+|...+..+.+.|+.+.|..+|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34578888888888765455666777888888889999999999999987655444567888899999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C
Q 008454 427 KDLDKNSLVPNASTYSALITG-QCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKC-M 504 (565)
Q Consensus 427 ~~~~~~~~~p~~~~~~~li~~-~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~ 504 (565)
+.+.+.+.. +...|...... +...|+.+.|..+|+.+++. .+.+...|...+..+.+.|+.+.|..+|++.++.. .
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 998876544 33444433332 34568899999999999986 35667889999999999999999999999998764 2
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 505 APD--SIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 505 ~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
.|+ ...|...+..-...|+.+.+.++++++.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 332 457888888888889999999999988654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=2.9e-08 Score=93.91 Aligned_cols=264 Identities=11% Similarity=0.018 Sum_probs=158.3
Q ss_pred HhhcCCCCCcHHHHHHHHHhcccCCCC--hHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCc-CHHHHHHHHHHH
Q 008454 166 ILDSDSFDLPSKLFDSILYSYRMCDSS--PLVFDLLFKTYAHRKKFRNATDTFCQMRDYG----FLP-IIESCNKFLSSL 238 (565)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~~~~~ll~~~ 238 (565)
....|.+..+..++...+...+..++. ..++..+...|...|++++|+..|++..+.. ..+ ....+..+...+
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 101 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 356677777788888887754432221 2467788899999999999999999986532 111 235567778888
Q ss_pred HcCCChHHHHHHHHHHHH----CCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 008454 239 LDSERVDIALGFYKEMRR----NRISPN---VYTLNMVMHAFCKLGIIERAVEVFKNMESM----GFIPSVTTYNTLISG 307 (565)
Q Consensus 239 ~~~~~~~~A~~~~~~m~~----~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~ 307 (565)
...|++..+...+..... .+.... ...+..+...+...|+++.+...+...... +.......+..+...
T Consensus 102 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
T d1hz4a_ 102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 999999999999988653 211111 234455666777788888888877776643 222234455556666
Q ss_pred HHhcCChhHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHH
Q 008454 308 HCNKGLLSLAMKFKNLMEKN----GIQP--NVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSP---NVVTYNTLINGY 378 (565)
Q Consensus 308 ~~~~g~~~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~ 378 (565)
+...++...+...+.+.... +..+ ....+..+...+...|++++|...++......... ....+..+...+
T Consensus 182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 261 (366)
T d1hz4a_ 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 261 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 67777777777766655432 1111 12233444556666677777777766654432111 123344455566
Q ss_pred HhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008454 379 GQVGNSEMGASLYEEMLRN----GIKVD-ILTYNALILGLCKEGKTKKAAYLVKDL 429 (565)
Q Consensus 379 ~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 429 (565)
...|++++|...+++.... +..|+ ..++..+...|...|++++|.+.+++.
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666666666655421 22221 234445555555555555555555544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.14 E-value=1.4e-08 Score=94.54 Aligned_cols=186 Identities=9% Similarity=-0.034 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008454 209 FRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKN 288 (565)
Q Consensus 209 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 288 (565)
.++|..+|++..+...+.+...|...+..+.+.|+++.|..+|+.+.+.........|...+..+.+.|+.+.|.++|+.
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 35555666665544333345555555555666666666666666655443222233455555555556666666666666
Q ss_pred HHhCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCC
Q 008454 289 MESMGFIPSVTTYNTLISG-HCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATN-VSP 366 (565)
Q Consensus 289 m~~~g~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~ 366 (565)
+.+.+.. +...|...... +...|+.+.|..+|+.+.+.. +.+...|...++.+.+.|+++.|..+|++..... ..|
T Consensus 160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 5554322 22222222221 223455555555555555431 2244555555555555555555555555554432 121
Q ss_pred C--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 008454 367 N--VVTYNTLINGYGQVGNSEMGASLYEEMLR 396 (565)
Q Consensus 367 ~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 396 (565)
+ ...|...+..-...|+.+.+..+++++.+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 22444444444455555555555554443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.03 E-value=1.5e-09 Score=102.55 Aligned_cols=253 Identities=7% Similarity=-0.098 Sum_probs=146.1
Q ss_pred HhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHH----------HHhcCChHHHHHHHHHHH
Q 008454 151 TKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKT----------YAHRKKFRNATDTFCQMR 220 (565)
Q Consensus 151 ~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~----------~~~~g~~~~A~~~~~~~~ 220 (565)
......++|.++++++++. .|.+..+|+..-.. +...|++++|+..++...
T Consensus 40 ~~~~~~~~al~~~~~~l~~-------------------~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l 100 (334)
T d1dcea1 40 QAGELDESVLELTSQILGA-------------------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 100 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHH-------------------CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Confidence 3344457888888888876 33344444332222 333445778888888887
Q ss_pred HCCCCcCHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008454 221 DYGFLPIIESCNKFLSSLLDSER--VDIALGFYKEMRRNRISPNVYTLN-MVMHAFCKLGIIERAVEVFKNMESMGFIPS 297 (565)
Q Consensus 221 ~~~~~p~~~~~~~ll~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 297 (565)
+.+.. +...|..+..++...++ .++|...++.+.+.. +.+...+. .....+...|..++|+..++.+.+.... +
T Consensus 101 ~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~ 177 (334)
T d1dcea1 101 RVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-N 177 (334)
T ss_dssp HHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-C
T ss_pred HhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-C
Confidence 76644 67777777777766654 678888888877653 23455543 3335555677888888888877776543 6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008454 298 VTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLING 377 (565)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 377 (565)
...|+.+...+.+.|++++|...+....+. .|+ ...+...+...+..+++...+....... +.+...+..++..
T Consensus 178 ~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~ 251 (334)
T d1dcea1 178 YSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEK 251 (334)
T ss_dssp HHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHH
Confidence 777777777777877777665444433221 011 1112233344455555555555554432 2333344444555
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 378 YGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKN 432 (565)
Q Consensus 378 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 432 (565)
+...|+.++|...+.+..+.... +...+..+..++...|+.++|.+.++.+.+.
T Consensus 252 ~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 252 STVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55555666666655555543221 3344555555555666666666666655553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=1.7e-09 Score=102.30 Aligned_cols=151 Identities=10% Similarity=0.011 Sum_probs=68.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----------CCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 199 LFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLD----------SERVDIALGFYKEMRRNRISPNVYTLNM 268 (565)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----------~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 268 (565)
++......+..++|+++++++.+.++. +...|+..-..+.. .|++++|+.+++...+.. +-+...|..
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~ 112 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 112 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 333333334457888888888776533 44555443333221 122445555555554432 123444444
Q ss_pred HHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 269 VMHAFCKLG--IIERAVEVFKNMESMGFIPSVTTYNT-LISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCK 345 (565)
Q Consensus 269 li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 345 (565)
+..++...+ ++++|...+.++.+.... +...+.. ....+...|.+++|+..++.+.+... -+...|+.+...+.+
T Consensus 113 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~ 190 (334)
T d1dcea1 113 RCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQ 190 (334)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHH
T ss_pred hhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 444443333 245555555554443211 2333222 22333444555555555554444432 244445555555555
Q ss_pred cCCHHHHH
Q 008454 346 KGKLHEAN 353 (565)
Q Consensus 346 ~g~~~~A~ 353 (565)
.|++++|.
T Consensus 191 ~~~~~~A~ 198 (334)
T d1dcea1 191 LHPQPDSG 198 (334)
T ss_dssp HSCCCCSS
T ss_pred hcCHHHHH
Confidence 55444443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=1.2e-08 Score=92.36 Aligned_cols=150 Identities=11% Similarity=-0.043 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhhcCCCC--CCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHH
Q 008454 121 VLSLEFFTWVQTHKPSS--LTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDL 198 (565)
Q Consensus 121 ~~al~~f~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (565)
..|+.-++.+....... .....|..+..++.+.|++++|...|++.++. .|.++.+|..
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l-------------------~p~~~~a~~~ 76 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI-------------------RPDMPEVFNY 76 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CCCCHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc-------------------CCCCHHHHhh
Confidence 34444455554433221 12346666777777888888888888887776 4557777888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 199 LFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGI 278 (565)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 278 (565)
+..+|.+.|++++|++.|+++.+.... +..++..+...+...|++++|...|+...+... .+......+...+.+.+.
T Consensus 77 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~ 154 (259)
T d1xnfa_ 77 LGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDE 154 (259)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCH
T ss_pred hchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhh
Confidence 888888888888888888888776543 566777777778888888888888887766532 234444444444455555
Q ss_pred HHHHHHHHHHHHh
Q 008454 279 IERAVEVFKNMES 291 (565)
Q Consensus 279 ~~~a~~~~~~m~~ 291 (565)
.+.+..+......
T Consensus 155 ~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 155 KQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 5555555454444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=1.6e-08 Score=91.35 Aligned_cols=94 Identities=12% Similarity=-0.064 Sum_probs=42.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008454 266 LNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCK 345 (565)
Q Consensus 266 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 345 (565)
|..+...|.+.|++++|++.|++..+.... +..+|..+..++.+.|++++|+..|++..+... -+..++..+..++..
T Consensus 40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 40 LYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-hhhhhHHHHHHHHHH
Confidence 333344444444444444444444443221 344444444444444444444444444444321 133344444444444
Q ss_pred cCCHHHHHHHHHHHHh
Q 008454 346 KGKLHEANRIFSEMKA 361 (565)
Q Consensus 346 ~g~~~~A~~~~~~m~~ 361 (565)
.|++++|.+.++...+
T Consensus 118 ~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHh
Confidence 4555555555544444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=2.6e-06 Score=72.33 Aligned_cols=133 Identities=13% Similarity=-0.004 Sum_probs=59.8
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 414 CKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAA 493 (565)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 493 (565)
...|+++.|++.|.++. .|+..+|..+..+|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|.
T Consensus 16 ~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 34444444444444321 2334444444444444455555555444444443 233444444444444455555554
Q ss_pred HHHHHHHHcCC--------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHh
Q 008454 494 EVLLEMLEKCM--------------APD-SIILSELYSGLHHCGKDELAMKLFRKMEIRGLLPKGFDKLRTIN 551 (565)
Q Consensus 494 ~~~~~~~~~~~--------------~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 551 (565)
..|++.+.... ..+ ..++..+..++.+.|++++|.+.+++..+....++.......+.
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~ 163 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAME 163 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHH
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHH
Confidence 44444433100 000 12333444555555666666665555554444444444443343
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.57 E-value=0.00018 Score=64.06 Aligned_cols=224 Identities=12% Similarity=-0.006 Sum_probs=128.2
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLD----SERVDIALGFYKEMRRNRISPNVYTLN 267 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~ 267 (565)
||..+..|...+.+.|++++|++.|++..+.| +..++..|...|.. ..+...|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 35566667778888889999999999888876 66677777777765 567778888887777654 334444
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 008454 268 MVMHAFCK----LGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCN----KGLLSLAMKFKNLMEKNGIQPNVITFNTL 339 (565)
Q Consensus 268 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 339 (565)
.+...+.. .++.+.|...++...+.|. ......+...+.. ......+...+......+ +...+..+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhh
Confidence 44444333 3566777777777766653 2222223222222 334555555555555532 45555555
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 340 IFGFCK----KGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQ----VGNSEMGASLYEEMLRNGIKVDILTYNALIL 411 (565)
Q Consensus 340 i~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 411 (565)
...+.. ..+...+...++...+.| +......+...|.. ..+.++|..+|....+.| +...+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 555554 334556666666655543 34444444444433 345666666666665554 3344444555
Q ss_pred HHHH----cCCHHHHHHHHHHHHhCC
Q 008454 412 GLCK----EGKTKKAAYLVKDLDKNS 433 (565)
Q Consensus 412 ~~~~----~g~~~~A~~~~~~~~~~~ 433 (565)
.|.+ ..+.++|.+.|++..+.|
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 5443 224555555555555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.54 E-value=0.00016 Score=64.52 Aligned_cols=225 Identities=13% Similarity=0.014 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHh----cCChHHHHHH
Q 008454 140 LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAH----RKKFRNATDT 215 (565)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 215 (565)
++.+..+...+...+++.+|..+|++..+.| +..++..|...|.. ..+...|...
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---------------------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~ 60 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---------------------ENSGCFNLGVLYYQGQGVEKNLKKAASF 60 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHcCCCcchhHHHHHHh
Confidence 4566667777777888888888888887764 44555556666665 5678888888
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHc----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 008454 216 FCQMRDYGFLPIIESCNKFLSSLLD----SERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK----LGIIERAVEVFK 287 (565)
Q Consensus 216 ~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~ 287 (565)
+......+ +...+..+...+.. .++.+.|...++...+.|. ......+...+.. ......+...+.
T Consensus 61 ~~~a~~~~---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~ 134 (265)
T d1ouva_ 61 YAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFT 134 (265)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred hccccccc---ccchhhccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhh
Confidence 88877765 44455555444443 4567778888888777652 2333333333332 345667777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 008454 288 NMESMGFIPSVTTYNTLISGHCN----KGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCK----KGKLHEANRIFSEM 359 (565)
Q Consensus 288 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m 359 (565)
.....+ +...+..|...+.. ..+...+..+++...+.| +..+...+...|.. ..++++|+.+|+..
T Consensus 135 ~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~a 208 (265)
T d1ouva_ 135 KACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKA 208 (265)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred hhhccc---ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhh
Confidence 766643 66677777777775 446667777777777765 56666666666665 56899999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCC
Q 008454 360 KATNVSPNVVTYNTLINGYGQ----VGNSEMGASLYEEMLRNGIK 400 (565)
Q Consensus 360 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~ 400 (565)
.+.| +...+..|...|.+ ..+.++|.++|++..+.|..
T Consensus 209 a~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 209 CELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 8876 45666677777764 34788999999998887654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=5.8e-06 Score=70.13 Aligned_cols=122 Identities=7% Similarity=-0.087 Sum_probs=61.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 379 GQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAF 458 (565)
Q Consensus 379 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 458 (565)
...|+++.|++.|.++ ..++..+|..+..+|...|++++|...|++..+.+.. +...|..+..++.+.|++++|+
T Consensus 16 ~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHHH
Confidence 3444444444444432 1233444444455555555555555555554443322 3444444455555555555555
Q ss_pred HHHHHHHHcC------------C--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008454 459 QLYKSMIRSG------------C--RPN-KHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMA 505 (565)
Q Consensus 459 ~~~~~m~~~~------------~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 505 (565)
+.|++.+... . ..+ ..++..+..++.+.|++++|.+.++...+....
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 5554444310 0 011 244555666777888888888888777765443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.40 E-value=6e-06 Score=75.35 Aligned_cols=61 Identities=16% Similarity=0.109 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008454 195 VFDLLFKTYAHRKKFRNATDTFCQMRDY----GFLP-IIESCNKFLSSLLDSERVDIALGFYKEMR 255 (565)
Q Consensus 195 ~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 255 (565)
.|......|...|++++|++.|.++.+. +-.+ -..+|+.+..+|.+.|++++|...++...
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~ 104 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhh
Confidence 4555666677777777777777776542 1111 13456666666666666666666665543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.40 E-value=9.2e-06 Score=74.09 Aligned_cols=162 Identities=11% Similarity=-0.100 Sum_probs=83.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHH
Q 008454 305 ISGHCNKGLLSLAMKFKNLMEKN----GIQP-NVITFNTLIFGFCKKGKLHEANRIFSEMKAT----NV-SPNVVTYNTL 374 (565)
Q Consensus 305 i~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~~~~~~~l 374 (565)
...|...|++++|.+.|.+..+. +-.+ -..+|..+..+|.+.|++++|.+.++...+. |. ......+..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44566667777777777665432 1111 1345666677777777777777777665432 10 0012333444
Q ss_pred HHHHHh-cCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----H-HHHH
Q 008454 375 INGYGQ-VGNSEMGASLYEEMLRN----GIKV-DILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPN-----A-STYS 442 (565)
Q Consensus 375 i~~~~~-~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~-~~~~ 442 (565)
...|.. .|++++|...+++..+. +..+ -..++..+...+...|++++|...|+++........ . ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 444433 46677776666655431 1111 123455556666666666666666666554322111 0 1123
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 443 ALITGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 443 ~li~~~~~~~~~~~A~~~~~~m~~ 466 (565)
..+..+...|+++.|...++++.+
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 333344455666666666665554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=6.5e-06 Score=63.44 Aligned_cols=90 Identities=11% Similarity=0.052 Sum_probs=46.5
Q ss_pred HHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc
Q 008454 147 LHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLP 226 (565)
Q Consensus 147 ~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 226 (565)
.+.+...|++++|...+.++++. .|.++.+|..+..+|...|++++|+..++...+.+..
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~-------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~- 69 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL-------------------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD- 69 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc-------------------CCcchhhhhcccccccccccccccchhhhhHHHhccc-
Confidence 44444555555555555555544 3344455555555555555555555555555544432
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Q 008454 227 IIESCNKFLSSLLDSERVDIALGFYKEMRR 256 (565)
Q Consensus 227 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 256 (565)
+...|..+..++...|++++|+..|+...+
T Consensus 70 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~ 99 (117)
T d1elwa_ 70 WGKGYSRKAAALEFLNRFEEAKRTYEEGLK 99 (117)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 445555555555555555555555555544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=1e-05 Score=66.30 Aligned_cols=105 Identities=10% Similarity=-0.098 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008454 407 NALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQN 486 (565)
Q Consensus 407 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 486 (565)
......|.+.|++++|...|+++.+.+.. +...|..+..+|...|++++|+..|+.+++.. +-+..+|..+..++...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHc
Confidence 33455667778888888888877776543 66777777777888888888888888887764 45567777777788888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008454 487 EDFDRAAEVLLEMLEKCMAPDSIILSEL 514 (565)
Q Consensus 487 g~~~~A~~~~~~~~~~~~~p~~~~~~~l 514 (565)
|++++|...+++...... -+...+..+
T Consensus 92 g~~~eA~~~~~~a~~~~p-~~~~~~~~l 118 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKP-HDKDAKMKY 118 (159)
T ss_dssp TCHHHHHHHHHHHHHHST-TCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 888888888887777532 234444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1.1e-05 Score=62.01 Aligned_cols=90 Identities=12% Similarity=-0.014 Sum_probs=43.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 008454 410 ILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDF 489 (565)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 489 (565)
...+.+.|++++|+..|.++.+.... +...|..+..++...|++++|+..+..+++.+ +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 33444455555555555554443322 44445555555555555555555555555443 33444455555555555555
Q ss_pred HHHHHHHHHHHH
Q 008454 490 DRAAEVLLEMLE 501 (565)
Q Consensus 490 ~~A~~~~~~~~~ 501 (565)
++|...+++.++
T Consensus 88 ~~A~~~~~~a~~ 99 (117)
T d1elwa_ 88 EEAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=8.3e-06 Score=66.81 Aligned_cols=89 Identities=15% Similarity=0.073 Sum_probs=40.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 008454 201 KTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIE 280 (565)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 280 (565)
..|.+.|++++|+..|++..+.+.. +...|..+...+...|++++|+..|+..++.. +-+...|..+..++...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHH
Confidence 3344444444444444444443322 44444444444444444444444444444332 113344444444444444444
Q ss_pred HHHHHHHHHHh
Q 008454 281 RAVEVFKNMES 291 (565)
Q Consensus 281 ~a~~~~~~m~~ 291 (565)
+|...+++...
T Consensus 96 eA~~~~~~a~~ 106 (159)
T d1a17a_ 96 AALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444444
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.30 E-value=4.8e-06 Score=71.22 Aligned_cols=98 Identities=9% Similarity=-0.016 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 008454 138 LTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFC 217 (565)
Q Consensus 138 ~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 217 (565)
|+.+.+......+.+.|++++|...|+++++. .|.++.+|..+..+|.+.|++++|+..|+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~-------------------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~ 62 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR-------------------NPLVAVYYTNRALCYLKMQQPEQALADCR 62 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------CCCCHHHHHhHHHHHhhhhhhhhhhHHHH
Confidence 45555666666666666666666666666655 34455666666666666666666666666
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Q 008454 218 QMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMR 255 (565)
Q Consensus 218 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~ 255 (565)
+..+.... +..+|..+..+|.+.|++++|+..|+...
T Consensus 63 ~al~l~p~-~~~a~~~lg~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 63 RALELDGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHTTSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66654422 45566666666666666666666666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.25 E-value=9.9e-06 Score=69.18 Aligned_cols=100 Identities=13% Similarity=-0.025 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008454 401 VDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLM 480 (565)
Q Consensus 401 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li 480 (565)
|+...+...+..|.+.|++++|+..|.++.+.... +...|..+..+|.+.|++++|+..|+.+++.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 67777888899999999999999999998887654 78889999999999999999999999999763 44578899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 008454 481 STFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 481 ~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
.++.+.|++++|...|+++++.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999988764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.10 E-value=1.9e-05 Score=60.06 Aligned_cols=85 Identities=14% Similarity=0.022 Sum_probs=39.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008454 447 GQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDEL 526 (565)
Q Consensus 447 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 526 (565)
.+.+.|++++|+..|++.+... +-+..+|..+..++.+.|++++|+..++++++.. +.+...|..+...|...|++++
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHHH
Confidence 3444444555555554444432 2234444444444444555555555554444432 1134444444444555555555
Q ss_pred HHHHHHH
Q 008454 527 AMKLFRK 533 (565)
Q Consensus 527 A~~~~~~ 533 (565)
|.+.+++
T Consensus 103 A~~~l~~ 109 (112)
T d1hxia_ 103 ALASLRA 109 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544444
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.08 E-value=0.0028 Score=57.69 Aligned_cols=283 Identities=10% Similarity=0.008 Sum_probs=143.3
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 192 SPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMH 271 (565)
Q Consensus 192 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 271 (565)
+..--..++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+.... +..+|..+..
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~ 77 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCF 77 (336)
T ss_dssp ----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHH
Confidence 333344567777788888888888876644 5566777788888888877776541 5667877777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008454 272 AFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHE 351 (565)
Q Consensus 272 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 351 (565)
.+.+......+ .+...+...+......++..|-..|.+++...+++..... -..+...++.++..|++.+ .++
T Consensus 78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~k 150 (336)
T d1b89a_ 78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQK 150 (336)
T ss_dssp HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHH
T ss_pred HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHH
Confidence 77776655443 2223333446666667888888888888888888876543 2456677777888887754 333
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHcCCHHHHH
Q 008454 352 ANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNG--------IKVDILTYNALILGLCKEGKTKKAA 423 (565)
Q Consensus 352 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~ 423 (565)
..+.+... +..-| ...++..|-+.+-+.++.-++.++.... ..++..-...++..+.+.++.
T Consensus 151 l~e~l~~~---s~~y~---~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~---- 220 (336)
T d1b89a_ 151 MREHLELF---WSRVN---IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANV---- 220 (336)
T ss_dssp HHHHHHHH---STTSC---HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSST----
T ss_pred HHHHHHhc---cccCC---HHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCCh----
Confidence 33333322 11112 2334555555555555554444432110 001111111222222222222
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008454 424 YLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKC 503 (565)
Q Consensus 424 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 503 (565)
..|-.++..|.... .+-...++..+... .|. ..++..+.+.+++.....+++...+.+
T Consensus 221 ---------------e~~~~~i~~yL~~~-p~~i~~lL~~v~~~---~d~---~r~V~~~~k~~~l~li~p~Le~v~~~n 278 (336)
T d1b89a_ 221 ---------------ELYYRAIQFYLEFK-PLLLNDLLMVLSPR---LDH---TRAVNYFSKVKQLPLVKPYLRSVQNHN 278 (336)
T ss_dssp ---------------HHHHHHHHHHHHHC-GGGHHHHHHHHGGG---CCH---HHHHHHHHHTTCTTTTHHHHHHHHTTC
T ss_pred ---------------HHHHHHHHHHHHcC-HHHHHHHHHHhccC---CCH---HHHHHHHHhcCCcHHHHHHHHHHHHcC
Confidence 23333333333211 11112222222111 111 234444556666666666666655543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 504 MAPDSIILSELYSGLHHCGKDELAMKLF 531 (565)
Q Consensus 504 ~~p~~~~~~~li~~~~~~g~~~~A~~~~ 531 (565)
+..+.++|...|...++++.-++..
T Consensus 279 ---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 279 ---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 3467788888888888865544333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.08 E-value=1.5e-05 Score=60.65 Aligned_cols=89 Identities=8% Similarity=-0.048 Sum_probs=57.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 008454 199 LFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGI 278 (565)
Q Consensus 199 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 278 (565)
+...+.+.|++++|+..|++..+.+.. +..+|..+..++.+.|++++|+..|+...+.. +.+...|..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 455566667777777777776665533 56666667777777777777777777666543 2246666666667777777
Q ss_pred HHHHHHHHHHH
Q 008454 279 IERAVEVFKNM 289 (565)
Q Consensus 279 ~~~a~~~~~~m 289 (565)
+++|++.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=1.5e-05 Score=61.61 Aligned_cols=92 Identities=11% Similarity=0.102 Sum_probs=42.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 008454 409 LILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKN---SERAFQLYKSMIRSGCRPN-KHIFEMLMSTFC 484 (565)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~ 484 (565)
+++.+...+++++|.+.|+.....+.. +..++..+..++.+.++ +++|+.++++++.....|+ ..++..+..+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 444445555555555555555444332 44444444444444332 2335555555544321111 123444444555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 008454 485 QNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 485 ~~g~~~~A~~~~~~~~~ 501 (565)
+.|++++|.+.|+++++
T Consensus 84 ~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 55555555555555554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.01 E-value=0.0051 Score=55.87 Aligned_cols=280 Identities=14% Similarity=0.114 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008454 140 LETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQM 219 (565)
Q Consensus 140 ~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 219 (565)
...-..+++.|.+.|.++.|..++..+.. |..++..+.+.++++.|.+++.+.
T Consensus 14 ~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------------------------~~rl~~~~v~l~~~~~avd~~~k~ 66 (336)
T d1b89a_ 14 NAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------------------------FGRLASTLVHLGEYQAAVDGARKA 66 (336)
T ss_dssp ---------------CTTTHHHHHHHTTC---------------------------HHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------------------------HHHHHHHHHhhccHHHHHHHHHHc
Confidence 33445567777788888888888764422 556778888888888888877654
Q ss_pred HHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008454 220 RDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVT 299 (565)
Q Consensus 220 ~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 299 (565)
-+..+|..+...+.+......| .+.......+......++..|-..|.+++...+++..... -..+..
T Consensus 67 ------~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~ 134 (336)
T d1b89a_ 67 ------NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMG 134 (336)
T ss_dssp ------TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHH
T ss_pred ------CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchH
Confidence 2567888888888877766544 2223333446666678888888899999998888877643 234677
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008454 300 TYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVI----------TFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVV 369 (565)
Q Consensus 300 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 369 (565)
.++.++..|++.+. ++. .+.+...+..-|.. .|.-++..|.+.|++++|..++ .+. .++..
T Consensus 135 ~~~~L~~lyak~~~-~kl---~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~ 205 (336)
T d1b89a_ 135 MFTELAILYSKFKP-QKM---REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAW 205 (336)
T ss_dssp HHHHHHHHHHTTCH-HHH---HHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTC
T ss_pred HHHHHHHHHHHhCh-HHH---HHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhh
Confidence 77888888887643 333 33333211111211 1233444444445555444432 111 12222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008454 370 TYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQC 449 (565)
Q Consensus 370 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 449 (565)
-....+..+.+..+.+...++.....+. .| ...+.++......-+. ..++..+.
T Consensus 206 ~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~----------------------~r~V~~~~ 259 (336)
T d1b89a_ 206 KEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDH----------------------TRAVNYFS 259 (336)
T ss_dssp CHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCH----------------------HHHHHHHH
T ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCH----------------------HHHHHHHH
Confidence 2333444455555554444444433321 11 1222333332222222 23344444
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008454 450 VRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVL 496 (565)
Q Consensus 450 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 496 (565)
+.+++......++...+.| +..+.+++...|...++++.-.+..
T Consensus 260 k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 260 KVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 5566666666666655544 4568888888898888876644443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=3.6e-05 Score=59.37 Aligned_cols=93 Identities=15% Similarity=0.060 Sum_probs=47.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 008454 443 ALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNED---FDRAAEVLLEMLEKCMAPDS-IILSELYSGL 518 (565)
Q Consensus 443 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~ 518 (565)
.+++.+...+++++|.+.|+..+..+ +.+..++..+..++.+.++ +++|+.+++++++.+..|+. .+|..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 34445555555555555555555543 4445555555555554332 33455555555543322221 2444555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 008454 519 HHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 519 ~~~g~~~~A~~~~~~m~~ 536 (565)
.+.|++++|.+.|+++.+
T Consensus 83 ~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 555666666665555554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=0.00024 Score=58.34 Aligned_cols=79 Identities=10% Similarity=0.013 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLH 519 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 519 (565)
+|+.+..+|.+.|++++|+..++..++.. +.+..++..+..++...|++++|...|+++++... -+..+...+.....
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQ 141 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 56677788888888999998888888874 55778888888888888999999999888887532 25555555544443
Q ss_pred h
Q 008454 520 H 520 (565)
Q Consensus 520 ~ 520 (565)
+
T Consensus 142 ~ 142 (170)
T d1p5qa1 142 R 142 (170)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=0.00032 Score=57.57 Aligned_cols=127 Identities=13% Similarity=-0.046 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008454 334 ITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGL 413 (565)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 413 (565)
..+......+.+.|++++|+..|.+......... +..+.-......+ -..+|+.+..+|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~--------------~~~~~~~~~~~~~-------~~~~~~nla~~y 72 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES--------------SFSNEEAQKAQAL-------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC--------------CCCSHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc--------------ccchHHHhhhchh-------HHHHHHHHHHHH
Confidence 3445556677788888888888877765310000 0000000111111 123567788888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008454 414 CKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTF 483 (565)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (565)
.+.|++++|+..++...+.+.. +...|..+..+|...|++++|+..|+.+++.. +-+..+...+..+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred Hhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 8999999999999988876543 77888888889999999999999999988864 33555555444443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=0.00022 Score=55.47 Aligned_cols=95 Identities=11% Similarity=0.079 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-----HHHHHHH
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGC-RPN-----KHIFEML 479 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~-----~~~~~~l 479 (565)
+..+...+.+.|++++|+..|.+..+.+.. +...|..+..+|.+.|++++|++.++++++..- .+. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 344555555566666666666655554332 455555555556666666666666655554210 000 1244445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 008454 480 MSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 480 i~~~~~~g~~~~A~~~~~~~~~ 501 (565)
...+...+++++|...|++.+.
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 5555555555555555555544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=1.2e-05 Score=79.31 Aligned_cols=212 Identities=11% Similarity=-0.037 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008454 193 PLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPII-ESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMH 271 (565)
Q Consensus 193 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 271 (565)
..++..+..+|...|++++| |+++...+ |+. ..++. ...+. ...+..+.+.++...+....++..-....+.
T Consensus 20 a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~-e~~Lw-~~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~ 92 (497)
T d1ya0a1 20 TDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKV-EQDLW-NHAFKNQITTLQGQAKNRANPNRSEVQANLS 92 (497)
T ss_dssp TCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTH-HHHHH-HHHTHHHHHHHHHHHSCSSCTTTTHHHHHHH
T ss_pred HHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhH-HHHHH-HHHHHHHHHHHHHhcccccCccHHHHHHHHH
Confidence 34445566667777777766 66665432 211 11111 11111 1224556677777665443333322222221
Q ss_pred H--HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 008454 272 A--FCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKL 349 (565)
Q Consensus 272 ~--~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 349 (565)
. ....+.++.++..+....+.. .++...+..+...+.+.|+.++|...+....... ...++..+...+...|++
T Consensus 93 ~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~ 168 (497)
T d1ya0a1 93 LFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQT 168 (497)
T ss_dssp HHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccH
Confidence 1 223445555555554443322 1245566777778888888888887776655431 135667788889999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 008454 350 HEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEG 417 (565)
Q Consensus 350 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 417 (565)
++|...|++..+.. +-+...|+.+...+...|+..+|...|.+..... .|-..++..|...+.+..
T Consensus 169 ~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 169 SQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence 99999999988874 4566889999999999999999999999998764 357778888887776543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=0.00031 Score=54.50 Aligned_cols=93 Identities=13% Similarity=0.158 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHHHHHHH
Q 008454 443 ALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCM--APD----SIILSELYS 516 (565)
Q Consensus 443 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~~li~ 516 (565)
.+...+...|++++|+..|.+.++.+ +.+..++..+..+|.+.|++++|...++++++... ... ..+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555543 33445555555555555555555555555543210 000 124444555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 008454 517 GLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 517 ~~~~~g~~~~A~~~~~~m~~ 536 (565)
.+...+++++|.+.|++...
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 55555555555555555443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.72 E-value=0.00037 Score=57.65 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHhhc
Q 008454 142 THSIVLHILTKNRKFKSSESILRGILDS 169 (565)
Q Consensus 142 ~~~~l~~~l~~~~~~~~a~~ll~~~~~~ 169 (565)
........+...|++++|...+.+.+..
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l 40 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALRE 40 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 3444566778899999999999998876
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.70 E-value=0.00073 Score=54.21 Aligned_cols=62 Identities=15% Similarity=0.021 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
+|+.+..+|.+.|++++|++.+..+++.. +.+..+|..+..++...|++++|...|++.++.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566667777777777777777777664 456677777777777777777777777777765
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.64 E-value=0.00089 Score=53.68 Aligned_cols=124 Identities=15% Similarity=-0.018 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008454 334 ITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGL 413 (565)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 413 (565)
..+..-...+.+.|++.+|+..|.+....-.... ............. ....+|+.+..+|
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~-------------~~~~~~~~~~~~~-------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE-------------EWDDQILLDKKKN-------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT-------------TCCCHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchh-------------hhhhHHHHHhhhh-------HHHHHHhhHHHHH
Confidence 3455566777788888888888887765310000 0000000000000 0234677788888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008454 414 CKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEML 479 (565)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 479 (565)
.+.|++++|+..++.+.+.+.. +...|..+..++...|++++|+..|+..++.. +-+..+...+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l 141 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSY 141 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 8999999999999888876543 77888888899999999999999999888863 2344444433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.63 E-value=0.00062 Score=55.74 Aligned_cols=61 Identities=10% Similarity=-0.001 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 441 YSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 441 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
|..+..++.+.|++++|+..+..+++.. +.+..+|..+..++...|++++|...|+++++.
T Consensus 80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 80 VLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3444444445555555555555554432 333444445555555555555555555555443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=1.6e-05 Score=78.44 Aligned_cols=109 Identities=11% Similarity=-0.036 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008454 334 ITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGL 413 (565)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 413 (565)
..+..+...+.+.|+.++|...+....... ....+..+...+...|++++|...|++..+.... +...|+.+...+
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILA 196 (497)
T ss_dssp ----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHH
Confidence 334444444455555555554444433211 1123444444445555555555555555443221 334455555555
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008454 414 CKEGKTKKAAYLVKDLDKNSLVPNASTYSALITG 447 (565)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 447 (565)
...|+..+|...|.+...... |-..++..|...
T Consensus 197 ~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~~~ 229 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQKA 229 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHH
Confidence 555555555555554444321 233444444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.58 E-value=0.0015 Score=53.24 Aligned_cols=94 Identities=10% Similarity=0.060 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008454 440 TYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLH 519 (565)
Q Consensus 440 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 519 (565)
.|..+..+|.+.|++++|+..+...++.. +.+...|..+..++...|++++|...|+++++.. +.+..+...+-....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45566777888888888888888888764 6677788888888888888888888888888753 224444444444433
Q ss_pred hcCCH-HHHHHHHHHHH
Q 008454 520 HCGKD-ELAMKLFRKME 535 (565)
Q Consensus 520 ~~g~~-~~A~~~~~~m~ 535 (565)
+.+.. +...++|..|.
T Consensus 144 ~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 144 KAKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 33332 23444444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.57 E-value=0.00067 Score=56.00 Aligned_cols=59 Identities=10% Similarity=-0.049 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008454 265 TLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCNKGLLSLAMKFKNLM 324 (565)
Q Consensus 265 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 324 (565)
.+..+...+.+.|++++|+..++++.+.... +...|..++.+|.+.|+..+|++.|+++
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4444555555556666666555555554322 4555555555555556655555555554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.57 E-value=0.00071 Score=55.35 Aligned_cols=63 Identities=16% Similarity=0.084 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 474 HIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
..|..+..++.+.|++++|+..++++++.. +.+...|..+..++.+.|++++|++.|++..+.
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 345555556666666666666666666543 224555666666666666666666666666554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.56 E-value=0.00082 Score=54.92 Aligned_cols=128 Identities=12% Similarity=-0.015 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008454 333 VITFNTLIFGFCKKGKLHEANRIFSEMKAT---NVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNAL 409 (565)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 409 (565)
...+......+.+.|++++|+..|.+.... ....+. .-......+ ....|+.+
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~-----------------~~~~~~~~~-------~~~~~~Nl 70 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE-----------------KESKASESF-------LLAAFLNL 70 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH-----------------HHHHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch-----------------hhhhhcchh-------HHHHHHhH
Confidence 345555667777788888888777765431 000000 000000111 12356667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008454 410 ILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQN 486 (565)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 486 (565)
..+|.+.|++++|+..++...+.+.. +...|..+..++...|++++|...|.++++.. +.+......+-....+.
T Consensus 71 a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 71 AMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Confidence 77888888888888888888776543 77788888888888888888888888888764 34455555444443333
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.42 E-value=0.00049 Score=54.67 Aligned_cols=77 Identities=13% Similarity=0.174 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008454 454 SERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNE-----------DFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCG 522 (565)
Q Consensus 454 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 522 (565)
+++|+..|+++++.. +-+..+|..+..+|...| .+++|.+.|+++++. .|+...|..-+..+
T Consensus 57 ~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~---- 129 (145)
T d1zu2a1 57 IQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT---- 129 (145)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH----
Confidence 456666666666653 445566666666665443 357788888888774 45555554444333
Q ss_pred CHHHHHHHHHHHHHCCC
Q 008454 523 KDELAMKLFRKMEIRGL 539 (565)
Q Consensus 523 ~~~~A~~~~~~m~~~g~ 539 (565)
..|.+++.+..+.|+
T Consensus 130 --~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 130 --AKAPQLHAEAYKQGL 144 (145)
T ss_dssp --HTHHHHHHHHHHSSS
T ss_pred --HHHHHHHHHHHHHhc
Confidence 456677777666654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.40 E-value=9e-05 Score=65.72 Aligned_cols=122 Identities=6% Similarity=-0.034 Sum_probs=66.7
Q ss_pred HhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHH
Q 008454 151 TKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIES 230 (565)
Q Consensus 151 ~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 230 (565)
.+.|++++|...+++.++. .|.+...+..++..|+..|++++|++.|+...+.... +...
T Consensus 7 L~~G~l~eAl~~l~~al~~-------------------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~ 66 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA-------------------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPG 66 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT-------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHH
T ss_pred HHCCCHHHHHHHHHHHHHH-------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHH
Confidence 3567777777777777776 5567777777777777777777777777777765422 3444
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008454 231 CNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCKLGIIERAVEVFKNMESM 292 (565)
Q Consensus 231 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 292 (565)
+..+...+...+..+++..-+......+-+++...+......+...|+.++|.+.++++.+.
T Consensus 67 ~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 67 ASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 44444444332222222111110000111112223333444555667777777777666543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.40 E-value=0.00018 Score=63.70 Aligned_cols=122 Identities=16% Similarity=-0.027 Sum_probs=68.6
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 414 CKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAA 493 (565)
Q Consensus 414 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 493 (565)
.+.|++++|+..+++..+.... |...+..+...++..|++++|.+.++...+.. +-+...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHH
Confidence 4567777777777777776544 66777777777777777777777777777652 222333443433333332222221
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008454 494 EVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIR 537 (565)
Q Consensus 494 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 537 (565)
.-.......+-.++...+......+...|+.++|.++++++.+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 11111111111122233344455667778888888888777654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.28 E-value=0.0005 Score=54.64 Aligned_cols=72 Identities=7% Similarity=-0.156 Sum_probs=53.6
Q ss_pred HhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhc----------CChHHHHHHHHHHH
Q 008454 151 TKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHR----------KKFRNATDTFCQMR 220 (565)
Q Consensus 151 ~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~ 220 (565)
-+.+.|++|...++..++. .|.++.++..+..+|... +.+++|++.|++..
T Consensus 8 ~r~~~fe~A~~~~e~al~~-------------------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl 68 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKS-------------------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL 68 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhh-------------------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3455688999999998887 667888888888888754 34567888888887
Q ss_pred HCCCCcCHHHHHHHHHHHHcCC
Q 008454 221 DYGFLPIIESCNKFLSSLLDSE 242 (565)
Q Consensus 221 ~~~~~p~~~~~~~ll~~~~~~~ 242 (565)
+.+.. +..+|..+..+|...|
T Consensus 69 ~l~P~-~~~a~~~lG~~y~~~g 89 (145)
T d1zu2a1 69 LIDPK-KDEAVWCIGNAYTSFA 89 (145)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHH
T ss_pred Hhcch-hhHHHhhHHHHHHHcc
Confidence 76644 6777777777776544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.95 E-value=0.0093 Score=47.56 Aligned_cols=97 Identities=20% Similarity=0.149 Sum_probs=63.2
Q ss_pred HHHHH--HHHHHhcCCHHHHHHHHHHHHHcCC-CCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 008454 440 TYSAL--ITGQCVRKNSERAFQLYKSMIRSGC-RPN----------KHIFEMLMSTFCQNEDFDRAAEVLLEMLEK---- 502 (565)
Q Consensus 440 ~~~~l--i~~~~~~~~~~~A~~~~~~m~~~~~-~p~----------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 502 (565)
+|..+ ...+...|++++|++.|++.++..- .|+ ..+|+.+..+|.+.|++++|...+++.++.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 3345566777777777777775310 111 356777788888888888888888777642
Q ss_pred -CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 503 -CMAPD-----SIILSELYSGLHHCGKDELAMKLFRKMEI 536 (565)
Q Consensus 503 -~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 536 (565)
...++ ...+..+..+|...|++++|.+.|++..+
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11121 12466678888888999998888888653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.75 E-value=0.0051 Score=44.32 Aligned_cols=83 Identities=10% Similarity=-0.059 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 008454 139 TLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQ 218 (565)
Q Consensus 139 ~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 218 (565)
+.+.+..+..++.+.|+++.|..++++.++....... .......+++.|..+|.+.|++++|++.+++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~------------~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~ 71 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEI------------STIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC------------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc------------cCccHHHHHHHHhhHHHhcCChHHHHHHHHH
Confidence 5667788999999999999999999998765210000 0112356788899999999999999999999
Q ss_pred HHHCCCCcCHHHHHHH
Q 008454 219 MRDYGFLPIIESCNKF 234 (565)
Q Consensus 219 ~~~~~~~p~~~~~~~l 234 (565)
+.+..+. +..+++.+
T Consensus 72 aL~l~P~-~~~a~~Nl 86 (95)
T d1tjca_ 72 LLELDPE-HQRANGNL 86 (95)
T ss_dssp HHHHCTT-CHHHHHHH
T ss_pred HHHhCcC-CHHHHHHH
Confidence 9987643 45665554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.74 E-value=0.016 Score=46.14 Aligned_cols=92 Identities=11% Similarity=-0.025 Sum_probs=59.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCC-C----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-
Q 008454 410 ILGLCKEGKTKKAAYLVKDLDKNSLV-P----------NASTYSALITGQCVRKNSERAFQLYKSMIRS-----GCRPN- 472 (565)
Q Consensus 410 i~~~~~~g~~~~A~~~~~~~~~~~~~-p----------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~~~p~- 472 (565)
...+.+.|++++|+..|++..+.... | ....|+.+..+|.+.|++++|+..+++.++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 34445566666666666666542110 1 1345777777788888888888777777642 11122
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 473 ----KHIFEMLMSTFCQNEDFDRAAEVLLEMLE 501 (565)
Q Consensus 473 ----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 501 (565)
...+..+..+|...|++++|...|+++++
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23466778888999999999999988765
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.17 E-value=0.093 Score=40.00 Aligned_cols=78 Identities=5% Similarity=0.085 Sum_probs=37.6
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 008454 208 KFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK----LGIIERAV 283 (565)
Q Consensus 208 ~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~ 283 (565)
|+++|++.|++..+.|. ...+..+.. ....+.++|..++++..+.| +...+..|-..|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 56777777777766652 223333322 22344555666665555543 33333333333332 23344555
Q ss_pred HHHHHHHhCC
Q 008454 284 EVFKNMESMG 293 (565)
Q Consensus 284 ~~~~~m~~~g 293 (565)
++|++..+.|
T Consensus 80 ~~~~~aa~~g 89 (133)
T d1klxa_ 80 QYYSKACGLN 89 (133)
T ss_dssp HHHHHHHHTT
T ss_pred HHHhhhhccC
Confidence 5555544443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.13 E-value=0.024 Score=40.52 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=9.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 008454 406 YNALILGLCKEGKTKKAAYLVKDLD 430 (565)
Q Consensus 406 ~~~li~~~~~~g~~~~A~~~~~~~~ 430 (565)
++.+..++.+.|++++|...++++.
T Consensus 49 l~~Lg~~~~~~g~~~~A~~~y~~aL 73 (95)
T d1tjca_ 49 LDYLSYAVYQQGDLDKALLLTKKLL 73 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHhcCChHHHHHHHHHHH
Confidence 3333333444444444444444333
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.11 E-value=0.087 Score=40.18 Aligned_cols=112 Identities=8% Similarity=0.013 Sum_probs=79.9
Q ss_pred CCchhHHHHHHHHhhcCCCCCcHHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHH
Q 008454 154 RKFKSSESILRGILDSDSFDLPSKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNK 233 (565)
Q Consensus 154 ~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 233 (565)
+++++|..++++..+.|. +.....|. .....+.++|++.|++..+.| +..++..
T Consensus 7 kd~~~A~~~~~kaa~~g~---------------------~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~ 60 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNE---------------------MFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRF 60 (133)
T ss_dssp HHHHHHHHHHHHHHHTTC---------------------TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCC---------------------hhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhh
Confidence 356788888888877752 22222222 223468899999999998877 6677777
Q ss_pred HHHHHHc----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCC
Q 008454 234 FLSSLLD----SERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK----LGIIERAVEVFKNMESMGF 294 (565)
Q Consensus 234 ll~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~ 294 (565)
|...|.. ..+.++|.++|+...+.| +......|...|.. ..+.++|.++|++..+.|.
T Consensus 61 Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 61 LGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 7777764 456899999999998876 55666666666655 4578888888888877763
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.22 E-value=0.68 Score=33.91 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008454 336 FNTLIFGFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGI 399 (565)
Q Consensus 336 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 399 (565)
+...++.+.+.|+-+.-.++++.+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|.
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3444455555555555555555544432 44555555555555555555555555555555554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.97 E-value=0.77 Score=33.61 Aligned_cols=140 Identities=14% Similarity=0.093 Sum_probs=81.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008454 379 GQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAF 458 (565)
Q Consensus 379 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~ 458 (565)
.-.|..++..+++.+.... .+..-||.+|--....-+-+.....++.+-+. .|. ...++.....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHH
Confidence 3456777777777766653 24556666666555555555555555554331 111 1122222222
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008454 459 QLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKMEIRG 538 (565)
Q Consensus 459 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 538 (565)
..+-.+ .-+...++..++.+.+.|+-+.-.++++.+.+. -++++...-.+..+|.+-|...++-+++.+.-++|
T Consensus 77 ~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 222221 123344556666777777777777777776663 45667777777778888888888888887777777
Q ss_pred CC
Q 008454 539 LL 540 (565)
Q Consensus 539 ~~ 540 (565)
++
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 53
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=89.57 E-value=7.8 Score=35.70 Aligned_cols=316 Identities=7% Similarity=-0.076 Sum_probs=156.0
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHcCCChH--HHHHHHHHHHHCC--------
Q 008454 189 CDSSPLVFDLLFKTYAHRKKFRNATDTFCQMRDYGFLPIIESCNKFLSSLLDSERVD--IALGFYKEMRRNR-------- 258 (565)
Q Consensus 189 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~--~A~~~~~~m~~~~-------- 258 (565)
.+.+...-...+.+....|+..+|...+..+-..|.. ....|..+...+.+.|... ....-+..+...|
T Consensus 98 ~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l 176 (450)
T d1qsaa1 98 KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVL 176 (450)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHH
Confidence 3445555556677777888888888877777665543 4445555555555544332 1222222222221
Q ss_pred ---CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCC
Q 008454 259 ---ISPNV-YTLNMVMHAFCKLGIIERAVEVFKNMESMGFIPSVTTYNTLISGHCN--KGLLSLAMKFKNLMEKNGIQPN 332 (565)
Q Consensus 259 ---~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~~~ 332 (565)
++++. ......+.... +...+.... ... ..+......+..++.+ ..+.+.+..++......... +
T Consensus 177 ~~~l~~~~~~~~~a~~~l~~---~p~~~~~~~---~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~ 247 (450)
T d1qsaa1 177 AGQMPADYQTIASAIISLAN---NPNTVLTFA---RTT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-N 247 (450)
T ss_dssp HHTCCGGGHHHHHHHHHHHH---CGGGHHHHH---HHS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-C
T ss_pred HhhCChhHHHHHHHHHHHHh---ChHhHHHHH---hcC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-c
Confidence 01111 11111111111 111111111 111 1233333333333332 24566666666666543222 2
Q ss_pred HHHHHHHHH----HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 008454 333 VITFNTLIF----GFCKKGKLHEANRIFSEMKATNVSPNVVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNA 408 (565)
Q Consensus 333 ~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 408 (565)
...+..+-. .+...+..+.+...+......+ .+.......+......+++..+...+..|... ..-.......
T Consensus 248 ~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW 324 (450)
T d1qsaa1 248 EDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYW 324 (450)
T ss_dssp HHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHH
Confidence 222222222 2223455566666666655543 23333334444455667777777777766433 2223455566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHH----HHHHHHHH
Q 008454 409 LILGLCKEGKTKKAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIRSGC--RPNKH----IFEMLMST 482 (565)
Q Consensus 409 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~----~~~~li~~ 482 (565)
+..++...|+.+.|...|..+... ++ .|..|...- .|..-. +-.... .+... .-...+..
T Consensus 325 ~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa~~--Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~ 390 (450)
T d1qsaa1 325 QADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAAQR--IGEEYE-------LKIDKAPQNVDSALTQGPEMARVRE 390 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHHHH--TTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHH
T ss_pred HHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHHHH--cCCCCC-------CCcCCCCccHHHhhhcChHHHHHHH
Confidence 777777777777777777776542 23 333333221 111000 000000 00000 01123455
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 483 FCQNEDFDRAAEVLLEMLEKCMAPDSIILSELYSGLHHCGKDELAMKLFRKM 534 (565)
Q Consensus 483 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 534 (565)
+...|....|...|..+.+. .+......+.....+.|.++.|+....+.
T Consensus 391 L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 391 LMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 67889999999999888764 24556667778888899999998777665
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.45 E-value=3.4 Score=30.15 Aligned_cols=26 Identities=12% Similarity=0.008 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 442 SALITGQCVRKNSERAFQLYKSMIRS 467 (565)
Q Consensus 442 ~~li~~~~~~~~~~~A~~~~~~m~~~ 467 (565)
-.|..+|.+.|++++|.+.++.+++.
T Consensus 77 Y~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 77 YYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 33444444455555555555554443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.90 E-value=2 Score=29.71 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008454 421 KAAYLVKDLDKNSLVPNASTYSALITGQCVRKNSERAFQLYKSMIR 466 (565)
Q Consensus 421 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 466 (565)
++.+-+..+...++.|++....+.+++|.+.+++..|+++++....
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555555555555555444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.39 E-value=4.6 Score=29.43 Aligned_cols=66 Identities=6% Similarity=0.101 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008454 436 PNASTYSALITGQCVRK---NSERAFQLYKSMIRSGCRPNK-HIFEMLMSTFCQNEDFDRAAEVLLEMLEK 502 (565)
Q Consensus 436 p~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 502 (565)
+...+--....++++.. +.++++.++++..+.+ +.+. ..+-.|.-+|.+.|++++|.+.++.+++.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 34444334444444433 3456777777776543 2232 44555666677777777777777777764
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.07 E-value=5.4 Score=27.46 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008454 454 SERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEMLEKCMAPDSIILSELY 515 (565)
Q Consensus 454 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 515 (565)
.-++.+-+..+....+.|++.+..+.+.+|.+.+++..|.++|+....+ ..++...|..++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil 82 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence 3345555555555566677777777777777777777777777666544 222334554443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=80.98 E-value=20 Score=32.66 Aligned_cols=328 Identities=11% Similarity=0.024 Sum_probs=196.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCchhHHHHHHHHhhcCCCCCc--HHHHHHHHHhcccCCCChHHHHHHHHHHHhcCChHHHH
Q 008454 136 SSLTLETHSIVLHILTKNRKFKSSESILRGILDSDSFDLP--SKLFDSILYSYRMCDSSPLVFDLLFKTYAHRKKFRNAT 213 (565)
Q Consensus 136 ~~~~~~~~~~l~~~l~~~~~~~~a~~ll~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 213 (565)
.+.+.+.-+....++...|+...|...+..+-..|...+. ..+|..+.. ....++..+-.-+......|++..|.
T Consensus 98 ~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~---~~~lt~~~~~~R~~~~l~~~~~~~a~ 174 (450)
T d1qsaa1 98 KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRA---SGKQDPLAYLERIRLAMKAGNTGLVT 174 (450)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHH---TTCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCChhhHH
Confidence 3456777778888999999999999999888877654432 233333322 12345555556666777778888887
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHh
Q 008454 214 DTFCQMRDYGFLPIIESCNKFLSSLLDSERVDIALGFYKEMRRNRISPNVYTLNMVMHAFCK--LGIIERAVEVFKNMES 291 (565)
Q Consensus 214 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~ 291 (565)
.+...+.. .........+..... ...+..... .. ..+......+..++.+ ..+.+.+..++.....
T Consensus 175 ~l~~~l~~----~~~~~~~a~~~l~~~---p~~~~~~~~---~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~ 242 (450)
T d1qsaa1 175 VLAGQMPA----DYQTIASAIISLANN---PNTVLTFAR---TT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQ 242 (450)
T ss_dssp HHHHTCCG----GGHHHHHHHHHHHHC---GGGHHHHHH---HS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHhhCCh----hHHHHHHHHHHHHhC---hHhHHHHHh---cC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 77665433 122333444444332 222222211 11 2344444444444433 3578888888888765
Q ss_pred CCCCCCHHHHHHHHH----HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008454 292 MGFIPSVTTYNTLIS----GHCNKGLLSLAMKFKNLMEKNGIQPNVITFNTLIFGFCKKGKLHEANRIFSEMKATNVSPN 367 (565)
Q Consensus 292 ~g~~p~~~~~~~li~----~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 367 (565)
.... +...+..+-. .....+..+.+..++......+. +.....-.+......+++..+...+..|.... ...
T Consensus 243 ~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~ 318 (450)
T d1qsaa1 243 AQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEK 318 (450)
T ss_dssp HTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGS
T ss_pred cccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccH
Confidence 4322 3333322222 22345667888888887776643 44444445666677899999999998875432 223
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CC-CHHH---H
Q 008454 368 VVTYNTLINGYGQVGNSEMGASLYEEMLRNGIKVDILTYNALILGLCKEGKTKKAAYLVKDLDKNSL--VP-NAST---Y 441 (565)
Q Consensus 368 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p-~~~~---~ 441 (565)
.....-+..++...|+.+.|...|...... ++ |..++.+- +.|..-. +....+ .+ .... -
T Consensus 319 ~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa~-~Lg~~~~-------~~~~~~~~~~~~~~~~~~~ 384 (450)
T d1qsaa1 319 DEWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAAQ-RIGEEYE-------LKIDKAPQNVDSALTQGPE 384 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHHH-HTTCCCC-------CCCCCCCSCCCCHHHHSHH
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHHH-HcCCCCC-------CCcCCCCccHHHhhhcChH
Confidence 445566788999999999999999998753 33 43333321 2222100 000000 00 0000 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008454 442 SALITGQCVRKNSERAFQLYKSMIRSGCRPNKHIFEMLMSTFCQNEDFDRAAEVLLEM 499 (565)
Q Consensus 442 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 499 (565)
..-+..+...|....|...|..+.+. .+......+.....+.|.++.|+....+.
T Consensus 385 ~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 385 MARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 12355677889999999999988764 35556667778888999999999877655
|