Citrus Sinensis ID: 008500

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560---
MSEPIILSDEEDQNALETPIQCPYKKIRTGPHPVAPTVLILDDDPTPKKSGFAPSSSSTPSFVAETPMSDVCIIKCTSRSWLDPQIRVSNSDENLAGSSRLVCLESDNECESGSGRVDLGQNELVHSDSDDEKDSEWDLRIGNAGFIQMSGDSSSQPTCSEYDMDLLQDCPEKENFSMEQMGNLLNTKRSLQVNADNRKSTDEAVGKKKKMTKEERMLFMEEKKKKKEEEKLRKAALKAEAAESKKLQKEMQKWAKGKFAQDSIVTEIDAKVVELGSVGGHLLTRFAEKRFKYRIASNPIERSIVWTMPVPEHISQISPQGMEIPYILLIYEAEEFCNLVLNESLMDHVSLVRRHYPSHTICYLTNRLMAHISKKEKERYKNPANNSGWRRPPVEEVLAKLTTHFFRVHSRQCIDEAEVAEHVVGLTSSLASCQFRKKLTRLSVNANGSLISKDSVDKNLIKKSPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNRKLGEVCSKRVYRILIAQSGSIKTDDIEDGADFFRCQSN
ccccEEccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccHHcccccHHHHHHHHHHcccEEEEEccccccEEEEEEEccccccccccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccccccccccccccccHHccc
ccccEEEEccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccEEEEEEcccccccccEEEcccccccccccEEEEEEcccccccccccccccccEEEEccccccccccccEEcccccccccccccccccccccccHHHHHcccccccccccccccccccccccEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcHHHHccccccHHHHHHHHHcccEEEEEccccccEEEEEEEccHHHcccccccccccEEEEEEcHHHHHHHHHcccHHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccEEEccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccHHccHHHHccccc
msepiilsdeedqnaletpiqcpykkirtgphpvaptvlildddptpkksgfapsssstpsfvaetpmsdvciikctsrswldpqirvsnsdenlagssrlvclesdnecesgsgrvdlgqnelvhsdsddekdsewdlrignagfiqmsgdsssqptcseydmdllqdcpekenfSMEQMGNLLNTKrslqvnadnrkstdeavgkkkkMTKEERMLFMEEKKKKKEEEKLRKAALKAEAAESKKLQKEMQKWAkgkfaqdsiVTEIDAKVVELGSVGGHLLTRFAEKRFKyriasnpiersivwtmpvpehisqispqgmeIPYILLIYEAEEFCNLVLNESLMDHVSLVrrhypshtICYLTNRLMAHISKKEkeryknpannsgwrrppVEEVLAKLTTHFFRvhsrqcideaEVAEHVVGLTSSLASCQFRKKLTRlsvnangsliskdsvdknlikkspwlkalvsipkvqprYAIAIWKKYPTMKALLSIymdpsksvhekefLLKDLtvdgllgdnrklgevCSKRVYRILIAqsgsiktddiedgadffrcqsn
msepiilsdeedqnALETPIQCPYKKIRTGPHPVAPTVLILDDDPTPKKSGfapsssstpsfvaETPMSDVCIIKCTsrswldpqirvsnsdenlagSSRLVCLESDNECESgsgrvdlgqnelvhsdsddekdsewDLRIGNAGFIQMSGDSSSQPTCSEYDMDLLQDCPEKENFSMEQMGNLLNTkrslqvnadnrkstdeavgkkkkmtkeermlfmeekkkkkeEEKLRKAALKAEAAESKKLQKEMQKWAKGKFAQDSIVTEIDAKVVELGSVGGHLLTRFAEKRFKYRIASNPIERSIVWTMPVPEHISQISPQGMEIPYILLIYEAEEFCNLVLNESLMDHVSLVRRHYPSHTICYLTNRLMAHISKKEkeryknpannsgwrrppVEEVLAKLTTHFFRVHSRQCIDEAEVAEHVVGLTSSLASCQFRKKLTrlsvnangsliskdsvdknlikkspwlkalvsipkvqprYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDltvdgllgdnrklgevcskRVYRILiaqsgsiktddiedGADFFRCQSN
MSEPIILSDEEDQNALETPIQCPYKKIRTGPHPVAPTVLILDDDPTPKKSGFApsssstpsFVAETPMSDVCIIKCTSRSWLDPQIRVSNSDENLAGSSRLVCLESDNECESGSGRVDLGQNELVHsdsddekdsewdLRIGNAGFIQMSGDSSSQPTCSEYDMDLLQDCPEKENFSMEQMGNLLNTKRSLQVNADNRKSTDEAVGKKKKMTkeermlfmeekkkkkeeeklrkaalkaeaaeskklqkeMQKWAKGKFAQDSIVTEIDAKVVELGSVGGHLLTRFAEKRFKYRIASNPIERSIVWTMPVPEHISQISPQGMEIPYILLIYEAEEFCNLVLNESLMDHVSLVRRHYPSHTICYLTNRLMAHISKKEKERYKNPANNSGWRRPPVEEVLAKLTTHFFRVHSRQCIDEAEVAEHVVGLTSSLASCQFRKKLTRLSVNANGSLISKDSVDKNLIKKSPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNRKLGEVCSKRVYRILIAQSGSIKTDDIEDGADFFRCQSN
********************QCPYKKIRTGPHPVAPTVLIL**************************MSDVCIIKCTSRSWLDPQIR*****************************************************IG***************************************************************************************************************WAKGKFAQDSIVTEIDAKVVELGSVGGHLLTRFAEKRFKYRIASNPIERSIVWTMPVPEHISQISPQGMEIPYILLIYEAEEFCNLVLNESLMDHVSLVRRHYPSHTICYLTNRLMAHI********************PVEEVLAKLTTHFFRVHSRQCIDEAEVAEHVVGLTSSLASCQFRKKLTRLSVNANGSLISKDSVDKNLIKKSPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNRKLGEVCSKRVYRILIAQSGSIKTDDIE**ADFF*****
**EPIIL***************************************************************************************************************************************************************************************************************************************************************SIVTEIDAKVVELGSVGGHLLTRFAEKRFKYRIASNPIERSIVWTMPVPEHISQISPQGMEIPYILLIYEAEEFCNLVLNESLMDHVSLVRRHYPSHTICYLTNRLMAHI*********************VEEVLAKLTTHFFRVHSRQCIDEAEVAEHVVGLTSSLASCQF********VNANGSLI***S*DKNLIKKSPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSK***********************LGEVCSKRVYRILIAQSGSIKTDDIEDGA********
MSEPIILSDEEDQNALETPIQCPYKKIRTGPHPVAPTVLILDDDPTP****************AETPMSDVCIIKCTSRSWLDPQIRVSNSDENLAGSSRLVCLESDNECESGSGRVDLGQNELV**********EWDLRIGNAGFIQM*********CSEYDMDLLQDCPEKENFSMEQMGNLLNTKRSLQVNA***************MTKEERMLFME*************************************FAQDSIVTEIDAKVVELGSVGGHLLTRFAEKRFKYRIASNPIERSIVWTMPVPEHISQISPQGMEIPYILLIYEAEEFCNLVLNESLMDHVSLVRRHYPSHTICYLTNRLMAHISKKEKERYKNPANNSGWRRPPVEEVLAKLTTHFFRVHSRQCIDEAEVAEHVVGLTSSLASCQFRKKLTRLSVNANGSLISKDSVDKNLIKKSPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNRKLGEVCSKRVYRILIAQSGSIKTDDIEDGADFFRCQSN
***********DQNALETPIQCPYKKIRTGPHPVAPTVLILDDD****************SFVAETPMSDVCIIKCTSRSWLDPQIRVSNSDENLAGSSRLVCLESDN*C***SGRVDLGQNELVHSDSDDEKDSEWDLRIGNAGF**********************DC*************************************************************LRKAALKAEAAESKKLQKEMQKWAKGKFAQDSIVTEIDAKVVELGSVGGHLLTRFAEKRFKYRIASNPIERSIVWTMPVPEHISQISPQGMEIPYILLIYEAEEFCNLVLNESLMDHVSLVRRHYPSHTICYLTNRLMAHISKKEKERY******SGWRRPPVEEVLAKLTTHFFRVHSRQCIDEAEVAEHVVGLTSSLASCQFRKKLTRLSVNANGSLISKDSVDKNLIKKSPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNRKLGEVCSKRVYRILIAQSGSIKTDDIEDGADFF*****
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MSEPIILSDEEDQNALETPIQCPYKKIRTGPHPVAPTVLILDDDPTPKKSGFAPSSSSTPSFVAETPMSDVCIIKCTSRSWLDPQIRVSNSDENLAGSSRLVCLESDNECESGSGRVDLGQNELVHSDSDDEKDSEWDLRIGNAGFIQMSGDSSSQPTCSEYDMDLLQDCPEKENFSMEQMGNLLNTKRSLQVNADNRKSTDEAVGKKKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQKEMQKWAKGKFAQDSIVTEIDAKVVELGSVGGHLLTRFAEKRFKYRIASNPIERSIVWTMPVPEHISQISPQGMEIPYILLIYEAEEFCNLVLNESLMDHVSLVRRHYPSHTICYLTNRLMAHISKKEKERYKNPANNSGWRRPPVEEVLAKLTTHFFRVHSRQCIDEAEVAEHVVGLTSSLASCQFRKKLTRLSVNANGSLISKDSVDKNLIKKSPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNRKLGEVCSKRVYRILIAQSGSIKTDDIEDGADFFRCQSN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query563 2.2.26 [Sep-21-2011]
C5H8J1551 Crossover junction endonu yes no 0.939 0.960 0.516 1e-143
Q84M98546 Crossover junction endonu no no 0.918 0.946 0.483 1e-133
Q0J9J6650 Crossover junction endonu yes no 0.596 0.516 0.568 1e-100
>sp|C5H8J1|EME1B_ARATH Crossover junction endonuclease EME1B OS=Arabidopsis thaliana GN=EME1B PE=1 SV=1 Back     alignment and function desciption
 Score =  508 bits (1309), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 296/573 (51%), Positives = 399/573 (69%), Gaps = 44/573 (7%)

Query: 1   MSEPIILSDEEDQNALETPIQCPYKKIRTGPHPVAPTVLILDDDPTPKKSGFAPSSSSTP 60
           M++ I++SD EDQ    TP+    K+ R   +P++  +LI D DPTP+K    P SS TP
Sbjct: 1   MNDHILISDGEDQT---TPLPSLSKRARK--YPIS-AILISDSDPTPQKQ--PPESSFTP 52

Query: 61  SFVAETPMSD-VCIIKCTSRSWLDPQIRVSNSDENLAGSSRLVCLESDNECESGSGRVDL 119
            FV ETP+SD   ++KC+  S    +   SN ++  +G  R++ L  D+E E        
Sbjct: 53  IFVPETPLSDDFSVVKCSFGS----RALASNREDKFSGK-RIISL--DSEFEDSPRPETS 105

Query: 120 GQNELVHSDSDDEK------DSEWDLRIGNAGFIQMSGDSS--------SQPTCSEYDMD 165
            +NE V +   + +       SE   +        +  D+S        S PT     ++
Sbjct: 106 KKNESVLAGLREPRFGLEAETSEAYYKNTRIPETNLDDDTSWMHEVSFRSSPTND--TIE 163

Query: 166 LLQDCPEKENFSMEQMGNLLNTKRSLQVNADNRKSTDEAVGKKKKMTKEERMLFMEEKKK 225
           ++ D  EKE+ S+E++G      R  ++         EA+ KK++ +KE++   MEEKK 
Sbjct: 164 VVSD-QEKEDISVEKIG------RKKKIRTTTLPVPGEALPKKRQ-SKEDKTSAMEEKKL 215

Query: 226 KKEEEKLRKAALKAEAAESKKLQKEMQKWAKGKFAQDSIVTEIDAKVVELGSVGGHLLTR 285
           +KE+E+L KAA KAE AE K+L+KE +KW KGK A  SIV EID KV+E GS+GG LL+R
Sbjct: 216 RKEQERLEKAASKAEEAERKRLEKEKKKWEKGKLALKSIVAEIDTKVLE-GSIGGLLLSR 274

Query: 286 FAEKRFKYRIASNPIERSIVWTMPVPEHISQISPQGMEIPYILLIYEAEEFCNLVLNESL 345
           F+EK     +  NPIERSIVWTM +PE I+ + PQG +IPY+LL+Y+AEEFCNLV N   
Sbjct: 275 FSEKGITIHVGPNPIERSIVWTMTIPEDIAPLFPQGPKIPYLLLVYDAEEFCNLVANGKF 334

Query: 346 MDHVSLVRRHYPSHTICYLTNRLMAHISKKEKERYKNPANNSGWRRPPVEEVLAKLTTHF 405
           ++ +S V+  YPS+T+C LTN+LM+++ K+EKE YKNP N   WRRPP++EVLAKLTTH+
Sbjct: 335 LEIISRVQDRYPSYTVCCLTNKLMSYVKKREKEEYKNPGN---WRRPPIDEVLAKLTTHY 391

Query: 406 FRVHSRQCIDEAEVAEHVVGLTSSLASCQFRKKLTRLSVNANGSLISKDSVDKNLIKKSP 465
            +VHSR C+DEAEVAEH+VGLTSSLASCQFRKKLT LSV+ANG+L+SKDSVDK+LIKKSP
Sbjct: 392 VKVHSRHCVDEAEVAEHIVGLTSSLASCQFRKKLTMLSVSANGALVSKDSVDKHLIKKSP 451

Query: 466 WLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNR 525
           WLKALV+IPKVQPRYA+A+WKKYP+MK+LL +YMD +KSVHEKEFLLKDL V+GL+G + 
Sbjct: 452 WLKALVAIPKVQPRYALAVWKKYPSMKSLLKVYMDRNKSVHEKEFLLKDLKVEGLVGGDI 511

Query: 526 KLGEVCSKRVYRILIAQSGSIKTDDIEDGADFF 558
           +LGE+CSKR+YR+L++  G+IKTDD+E+GA FF
Sbjct: 512 RLGEICSKRIYRVLMSHDGAIKTDDVENGAAFF 544
Interacts with MUS81 to form a DNA structure-specific endonuclease with substrate preference for branched DNA structures with a 5'-end at the branch nick. Typical substrates include 3'-flap structures, D-loops, replication forks, nicked Holliday junctions and also intact Holliday junctions with a reduced efficiency. May be required in mitosis for the processing of stalled or collapsed replication fork intermediates. Plays a role in DNA repair and in genotoxic stress-induced homologous recombination (HR) in somatic cells. Mediates a subset of meiotic recombination events that are insensitive to crossover interference.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 2EC: 2EC: .EC: -
>sp|Q84M98|EME1A_ARATH Crossover junction endonuclease EME1A OS=Arabidopsis thaliana GN=EME1A PE=1 SV=1 Back     alignment and function description
>sp|Q0J9J6|EME1_ORYSJ Crossover junction endonuclease EME1 OS=Oryza sativa subsp. japonica GN=EME1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query563
359480865 678 PREDICTED: uncharacterized protein LOC10 0.989 0.821 0.649 0.0
357519715578 hypothetical protein MTR_8g092300 [Medic 0.948 0.923 0.577 1e-177
449448582563 PREDICTED: crossover junction endonuclea 0.966 0.966 0.603 1e-169
296082536443 unnamed protein product [Vitis vinifera] 0.747 0.950 0.722 1e-161
356511139624 PREDICTED: uncharacterized protein LOC10 0.802 0.724 0.650 1e-159
255578813400 conserved hypothetical protein [Ricinus 0.685 0.965 0.723 1e-146
240254508551 essential meiotic endonuclease 1B [Arabi 0.939 0.960 0.516 1e-141
79559555546 essential meiotic endonuclease 1A [Arabi 0.918 0.946 0.483 1e-132
334184359549 essential meiotic endonuclease 1A [Arabi 0.920 0.943 0.478 1e-131
297825075519 hypothetical protein ARALYDRAFT_481078 [ 0.859 0.932 0.470 1e-126
>gi|359480865|ref|XP_002275413.2| PREDICTED: uncharacterized protein LOC100254360 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/587 (64%), Positives = 455/587 (77%), Gaps = 30/587 (5%)

Query: 1   MSEPI---ILSDE-EDQNALE-TPIQCPYKKIRTGP-HPVA----PTVLILDDDPTPKKS 50
           M+EPI   ILSD+ +D ++L  TP+    KK RT    P++    PT+LI+DDDPTP+K 
Sbjct: 1   MAEPISLHILSDDDQDPSSLHSTPLPIQSKKRRTEDCDPISTLPYPTILIIDDDPTPRK- 59

Query: 51  GFAPSSSSTPSFVAETPMS-----DVCIIKCTSRSWLDPQIRVSNSDENLAGSSRLVCLE 105
              P S STPSFVAETP+S     DV I+KCT  S  +P++RVS SD+  A  SRL+CLE
Sbjct: 60  ---PGSDSTPSFVAETPLSGLSKSDVSIVKCTYAS-SNPEVRVSTSDQKFAEISRLICLE 115

Query: 106 SDNECESGSGRVDL--GQNELVHSDSDDEKDSEWDLRI-------GNAGFIQMSGDSSSQ 156
           SDNE E+G GR +L   +NE    DS+  K S+   +        G+     M  D  + 
Sbjct: 116 SDNESENGIGRGNLKENENETTCVDSNVLKVSDLSSQFVEPACSPGSVNETWMYRDGCNV 175

Query: 157 PTCSEYDMDLLQDCPEKENFSMEQMGNLLNTKRSLQVNADNRKSTDEAVGKKKKMTKEER 216
           PT  E D+  ++D  +KEN  +EQ  ++L  K +++VNA+ +K  D A+G K +  KEER
Sbjct: 176 PTFLEDDIHQVEDHSDKENVGLEQKDDVLKQKSTIEVNAEKKKRMDRAMGTKNQ-KKEER 234

Query: 217 MLFMEEKKKKKEEEKLRKAALKAEAAESKKLQKEMQKWAKGKFAQDSIVTEIDAKVVELG 276
           +  MEEKK KK+EEKL+KAALKAEAAE KKLQKE QKW KGK A  SIV +ID KV+ELG
Sbjct: 235 IRLMEEKKLKKQEEKLQKAALKAEAAELKKLQKEKQKWEKGKLALKSIVAQIDTKVIELG 294

Query: 277 SVGGHLLTRFAEKRFKYRIASNPIERSIVWTMPVPEHISQISPQGMEIPYILLIYEAEEF 336
           S+GGHLL+RFAEK   +R+ SNPI RSIVWTM VPE ISQ+SP+GMEIPY+LLIYEAEEF
Sbjct: 295 SIGGHLLSRFAEKGLTFRVTSNPIARSIVWTMTVPEQISQLSPEGMEIPYVLLIYEAEEF 354

Query: 337 CNLVLNESLMDHVSLVRRHYPSHTICYLTNRLMAHISKKEKERYKNPANNSGWRRPPVEE 396
           CNLV NESLMDHV  VR HYPSHT+CYLTNRLMA+I ++E+  YKNP N+S WRRPPVEE
Sbjct: 355 CNLVTNESLMDHVLGVRSHYPSHTVCYLTNRLMAYIHRREQGHYKNPTNSSSWRRPPVEE 414

Query: 397 VLAKLTTHFFRVHSRQCIDEAEVAEHVVGLTSSLASCQFRKKLTRLSVNANGSLISKDSV 456
           VL+KLTTHF RVHSRQCIDEAE+AEHVVGLT SLASCQFRKKLTRLSVNANGSLI KDS 
Sbjct: 415 VLSKLTTHFLRVHSRQCIDEAELAEHVVGLTCSLASCQFRKKLTRLSVNANGSLIPKDST 474

Query: 457 DKNLIKKSPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLT 516
           D+NLIKKS WLKALV+IPKVQPR+AIAIWKKYPTMK+LL +YMDPSKSVHEKEFLLKDLT
Sbjct: 475 DRNLIKKSVWLKALVAIPKVQPRFAIAIWKKYPTMKSLLRVYMDPSKSVHEKEFLLKDLT 534

Query: 517 VDGLLGDNRKLGEVCSKRVYRILIAQSGSIKTDDIEDGADFFRCQSN 563
            +GLLG++R+LGEVCSKRVYRIL+AQSG++KTDD+EDGADFFR QS+
Sbjct: 535 TEGLLGEDRRLGEVCSKRVYRILMAQSGNMKTDDVEDGADFFRHQSS 581

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357519715|ref|XP_003630146.1| hypothetical protein MTR_8g092300 [Medicago truncatula] gi|355524168|gb|AET04622.1| hypothetical protein MTR_8g092300 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449448582|ref|XP_004142045.1| PREDICTED: crossover junction endonuclease EME1B-like [Cucumis sativus] gi|449487947|ref|XP_004157880.1| PREDICTED: crossover junction endonuclease EME1B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296082536|emb|CBI21541.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356511139|ref|XP_003524287.1| PREDICTED: uncharacterized protein LOC100813276 [Glycine max] Back     alignment and taxonomy information
>gi|255578813|ref|XP_002530263.1| conserved hypothetical protein [Ricinus communis] gi|223530229|gb|EEF32133.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|240254508|ref|NP_179804.5| essential meiotic endonuclease 1B [Arabidopsis thaliana] gi|403399375|sp|C5H8J1.1|EME1B_ARATH RecName: Full=Crossover junction endonuclease EME1B; AltName: Full=Essential meiotic endonuclease 1B; Short=AtEME1B gi|223930680|gb|ACN24999.1| essential meiotic endonuclease 1B [Arabidopsis thaliana] gi|330252176|gb|AEC07270.1| essential meiotic endonuclease 1B [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79559555|ref|NP_179771.2| essential meiotic endonuclease 1A [Arabidopsis thaliana] gi|75147156|sp|Q84M98.1|EME1A_ARATH RecName: Full=Crossover junction endonuclease EME1A; AltName: Full=Essential meiotic endonuclease 1A; Short=AtEME1A gi|30102692|gb|AAP21264.1| At2g21800 [Arabidopsis thaliana] gi|110735996|dbj|BAE99972.1| hypothetical protein [Arabidopsis thaliana] gi|330252129|gb|AEC07223.1| essential meiotic endonuclease 1A [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334184359|ref|NP_001189572.1| essential meiotic endonuclease 1A [Arabidopsis thaliana] gi|238480371|gb|ACR43775.1| meiotic endonuclease 1A [Arabidopsis thaliana] gi|330252130|gb|AEC07224.1| essential meiotic endonuclease 1A [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297825075|ref|XP_002880420.1| hypothetical protein ARALYDRAFT_481078 [Arabidopsis lyrata subsp. lyrata] gi|297326259|gb|EFH56679.1| hypothetical protein ARALYDRAFT_481078 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query563
TAIR|locus:2055961551 EME1B "essential meiotic endon 0.538 0.549 0.677 8e-127
UNIPROTKB|Q0J9J6650 EME1 "Crossover junction endon 0.539 0.467 0.565 7.9e-96
UNIPROTKB|F1RT80576 EME1 "Uncharacterized protein" 0.303 0.296 0.252 0.00012
UNIPROTKB|G3N153574 EME1 "Uncharacterized protein" 0.309 0.303 0.25 0.00036
TAIR|locus:2055961 EME1B "essential meiotic endonuclease 1B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1139 (406.0 bits), Expect = 8.0e-127, Sum P(2) = 8.0e-127
 Identities = 208/307 (67%), Positives = 261/307 (85%)

Query:   252 QKWAKGKFAQDSIVTEIDAKVVELGSVGGHLLTRFAEKRFKYRIASNPIERSIVWTMPVP 311
             +KW KGK A  SIV EID KV+E GS+GG LL+RF+EK     +  NPIERSIVWTM +P
Sbjct:   242 KKWEKGKLALKSIVAEIDTKVLE-GSIGGLLLSRFSEKGITIHVGPNPIERSIVWTMTIP 300

Query:   312 EHISQISPQGMEIPYILLIYEAEEFCNLVLNESLMDHVSLVRRHYPSHTICYLTNRLMAH 371
             E I+ + PQG +IPY+LL+Y+AEEFCNLV N   ++ +S V+  YPS+T+C LTN+LM++
Sbjct:   301 EDIAPLFPQGPKIPYLLLVYDAEEFCNLVANGKFLEIISRVQDRYPSYTVCCLTNKLMSY 360

Query:   372 ISKKEKERYKNPANNSGWRRPPVEEVLAKLTTHFFRVHSRQCIDEAEVAEHVVGLTSSLA 431
             + K+EKE YKNP N   WRRPP++EVLAKLTTH+ +VHSR C+DEAEVAEH+VGLTSSLA
Sbjct:   361 VKKREKEEYKNPGN---WRRPPIDEVLAKLTTHYVKVHSRHCVDEAEVAEHIVGLTSSLA 417

Query:   432 SCQFRKKLTRLSVNANGSLISKDSVDKNLIKKSPWLKALVSIPKVQPRYAIAIWKKYPTM 491
             SCQFRKKLT LSV+ANG+L+SKDSVDK+LIKKSPWLKALV+IPKVQPRYA+A+WKKYP+M
Sbjct:   418 SCQFRKKLTMLSVSANGALVSKDSVDKHLIKKSPWLKALVAIPKVQPRYALAVWKKYPSM 477

Query:   492 KALLSIYMDPSKSVHEKEFLLKDLTVDGLLGDNRKLGEVCSKRVYRILIAQSGSIKTDDI 551
             K+LL +YMD +KSVHEKEFLLKDL V+GL+G + +LGE+CSKR+YR+L++  G+IKTDD+
Sbjct:   478 KSLLKVYMDRNKSVHEKEFLLKDLKVEGLVGGDIRLGEICSKRIYRVLMSHDGAIKTDDV 537

Query:   552 EDGADFF 558
             E+GA FF
Sbjct:   538 ENGAAFF 544
GO:0003677 "DNA binding" evidence=IEA
GO:0004518 "nuclease activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006259 "DNA metabolic process" evidence=IEA
GO:0004519 "endonuclease activity" evidence=IDA
GO:0006281 "DNA repair" evidence=IDA
GO:0006310 "DNA recombination" evidence=IDA
UNIPROTKB|Q0J9J6 EME1 "Crossover junction endonuclease EME1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|F1RT80 EME1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|G3N153 EME1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
C5H8J1EME1B_ARATH3, ., 1, ., 2, 2, ., -0.51650.93960.9600yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.22LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 563
KOG2379501 consensus Endonuclease MUS81 [Replication, recombi 99.94
PF02732143 ERCC4: ERCC4 domain; InterPro: IPR006166 This entr 99.69
COG1948254 MUS81 ERCC4-type nuclease [DNA replication, recomb 99.38
PRK13766773 Hef nuclease; Provisional 98.9
TIGR00596814 rad1 DNA repair protein (rad1). This family is bas 98.79
KOG2841254 consensus Structure-specific endonuclease ERCC1-XP 93.24
KOG0442892 consensus Structure-specific endonuclease ERCC1-XP 93.24
PF1282664 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS 90.93
KOG4364 811 consensus Chromatin assembly factor-I [Chromatin s 88.75
KOG4364 811 consensus Chromatin assembly factor-I [Chromatin s 83.54
PF1452060 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU 81.06
>KOG2379 consensus Endonuclease MUS81 [Replication, recombination and repair] Back     alignment and domain information 
Probab=99.94  E-value=5.8e-26  Score=243.11  Aligned_cols=232  Identities=16%  Similarity=0.228  Sum_probs=178.8

Q ss_pred             HHHHhhCCCeEEEeecCCCceEEEEccCCCCCCCCCCCccccCeEEEEecHHHHHHHHhcCchhHHHHHHHhhCCCCcEE
Q 008500          283 LTRFAEKRFKYRIASNPIERSIVWTMPVPEHISQISPQGMEIPYILLIYEAEEFCNLVLNESLMDHVSLVRRHYPSHTIC  362 (563)
Q Consensus       283 l~~L~~lgv~~~I~s~pIp~sI~WrRkVp~~~~~~~~~~~eEp~VLv~l~aeeFv~lI~d~~L~e~v~rLk~~~P~~kli  362 (563)
                      ...+.-.||+++|+.+.+ |++.|.++-...     +.+...++||.+.+.+||+.+|.||+|++|+.||++++. .++|
T Consensus       249 ~~~~~~~~v~~evR~L~v-GD~lWVa~~k~~-----g~E~VLd~IVERKr~DDl~SSIrDgRf~EQK~RLq~sGi-k~~i  321 (501)
T KOG2379|consen  249 GEYFELEGVKHEVRSLEV-GDFLWVARHKYD-----GTELVLDFIVERKRLDDLVSSIRDGRFKEQKNRLQRSGI-KRII  321 (501)
T ss_pred             hhhhhhccceeeEEEecc-cceEEEecccCC-----CceEeeeeheeecchHHHHHHHhccchHHHHHHHHhcCc-ceEE
Confidence            344666799999999998 999999984222     344567899999999999999999999999999999988 6899


Q ss_pred             EEeccchHHHHHHhhhhhcCCCCCCCCCCCcHHHHHHHHHHhhceeEEEEcCCHHHHHHHHHHHHHHHHhc---------
Q 008500          363 YLTNRLMAHISKKEKERYKNPANNSGWRRPPVEEVLAKLTTHFFRVHSRQCIDEAEVAEHVVGLTSSLASC---------  433 (563)
Q Consensus       363 yLVEGL~~ylrKr~~~qyk~~~~~~~~~rp~VEeALlqLQl~~~~Vh~~~~~d~~Eta~~I~~lTKaIA~~---------  433 (563)
                      |||||...-     | +        +.-...+.+|+.-.|+.. ++++..+.+..|++.+|..+|+.+-..         
T Consensus       322 YlvE~~~~~-----n-~--------~~~~eslktA~~~t~v~~-GF~V~RT~~l~et~s~l~y~tr~~~~~~~~~~~~~~  386 (501)
T KOG2379|consen  322 YLVEEDGNP-----N-Q--------SKPAESLKTAVTNTLVLE-GFDVIRTRDLGETVSKLAYLTRGLLQIYASLLLDKE  386 (501)
T ss_pred             EEEeccCCc-----c-c--------ccHHHHHHHHHHHHhhhc-ceEEEEecChhHHHHHHHHHhHHHHHHHHHhhcccc
Confidence            999997510     0 0        001135677888888876 666666667889999999999999864         


Q ss_pred             cccccccccc---cccCCceeccCcc------ccCCCchHHHHHHHhhccCCCHHHHHHHHHhCCCHHHHHHHhcCCCcC
Q 008500          434 QFRKKLTRLS---VNANGSLISKDSV------DKNLIKKSPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKS  504 (563)
Q Consensus       434 PyKk~~~~~s---~~~~g~~v~k~~V------~kg~~l~dvW~rqLqQI~rVS~eiA~AIv~~YPSP~~Lv~AY~~cs~S  504 (563)
                      +|+...+.+.   -...+.|+..+++      .++.++.++|.+|||||+|||.++|+||+.+||||.+|+.||+.| .+
T Consensus       387 d~~~~~~q~~~~~~~p~~~~~~f~~F~~~~~K~~~~TV~evf~~qLMqvkg~S~erAiAI~d~YpTl~sLl~AY~~s-~~  465 (501)
T KOG2379|consen  387 DYRERDDQLKGAMTVPSETELSFSAFQERLSKGKALTVGEVFARQLMQVKGMSLERAIAIADRYPTLRSLLSAYEVS-AD  465 (501)
T ss_pred             ccccchhhhhcccCCCCcccccHHHHHHHhhhcccccHHHHHHHHHHhccCccHHHHHHHHHhccCHHHHHHHHhcc-Cc
Confidence            3333222211   1122333433332      346789999999999999999999999999999999999999744 57


Q ss_pred             hHHHHhhhhcccccCCCCCcccccHHHHHHHHHHHh
Q 008500          505 VHEKEFLLKDLTVDGLLGDNRKLGEVCSKRVYRILI  540 (563)
Q Consensus       505 e~Eke~LLadlki~g~~g~~RRIGpaLSrRIY~vft  540 (563)
                      ++++.++|..+++. .  +.|+|||+||..||.+|.
T Consensus       466 ~k~~~l~ln~~~~~-~--~~rn~~~~Ls~~l~~~F~  498 (501)
T KOG2379|consen  466 DKLRLLLLNPIKCG-P--GSRNIGPALSAKLYEFFL  498 (501)
T ss_pred             HHHHhccccccccc-c--ccccccHHHHHHHHHhhh
Confidence            77888888888763 1  469999999999999885

>PF02732 ERCC4: ERCC4 domain; InterPro: IPR006166 This entry represents a structural motif found in several DNA repair nucleases, such as Rad1/Mus81/XPF endonucleases (3 Back     alignment and domain information
>COG1948 MUS81 ERCC4-type nuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>KOG2841 consensus Structure-specific endonuclease ERCC1-XPF, ERCC1 component [Replication, recombination and repair] Back     alignment and domain information
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair] Back     alignment and domain information
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B Back     alignment and domain information
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] Back     alignment and domain information
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] Back     alignment and domain information
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query563
2ziu_B341 Crossover junction endonuclease EME1; helix-hairpi 5e-47
2zix_A307 Crossover junction endonuclease MUS81; helix-hairp 2e-24
2ziu_A311 MUS81 protein; helix-hairpin-helix, alternative sp 1e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 6e-04
>2ziu_B Crossover junction endonuclease EME1; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Homo sapiens} PDB: 2ziw_B 2zix_B 2ziv_B Length = 341 Back     alignment and structure
 Score =  166 bits (422), Expect = 5e-47
 Identities = 58/344 (16%), Positives = 118/344 (34%), Gaps = 40/344 (11%)

Query: 244 SKKLQKEMQKWAKGKFAQDSIVTEIDAKVVELGSVGGHLLTRFAEKRFKYRIASNPIERS 303
           S        +    +     I+  +D  ++++   GG LL        +  I +  +  S
Sbjct: 3   SSHHHHHHSQDPNSEECLKHIIVVLDPVLLQM-EGGGQLLGALQTMECRCVIEAQAVPCS 61

Query: 304 IVWTMPVPEHISQISPQGMEIPYILLIYEAEEFCNLVLN-------------ESLMDHVS 350
           + W         +     +E P +L++  AE F +++ N             E+L   V+
Sbjct: 62  VTWRRRAGPS--EDREDWVEEPTVLVLLRAEAFVSMIDNGKQGSLDSTMKGKETLQGFVT 119

Query: 351 LVRRHYPSHTICYLTNRLMAHISKKEK----------------ERYKNPANNSGWRRPPV 394
            +        +  +        S +                  +R    +  S   R   
Sbjct: 120 DITAKTAGKALSLVIVDQEKCFSAQNPPRRGKQGANKQTKKQQQRQPEASIGSMVSRVDA 179

Query: 395 EEVLAKLTTHFFRVHSRQCIDEAEVAEHVVGLTSSLASCQFRKKLTRLSVNANGSLISKD 454
           EE L  L  H     ++      E+A+     T ++A   F+K     + +         
Sbjct: 180 EEALVDLQLHT-EAQAQIVQSWKELADFTCAFTKAVAEAPFKKLRDETTFSFCLESDWAG 238

Query: 455 SVDKNLIKKSP---WLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFL 511
            V  +L  +     W + +  + +V    A A+   YP+ + L+  Y     S  E++ L
Sbjct: 239 GVKVDLAGRGLALVWRRQIQQLNRVSLEMASAVVNAYPSPQLLVQAYQQCF-SDKERQNL 297

Query: 512 LKDLTV---DGLLGDNRKLGEVCSKRVYRILIAQSGSIKTDDIE 552
           L D+ V   +G+   +R++G   S+R+Y  +      +  D  +
Sbjct: 298 LADIQVRRGEGVTSTSRRIGPELSRRIYLQMTTLQPHLSLDSAD 341
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens} Length = 307 Back     alignment and structure
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A Length = 311 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query563
2ziu_B341 Crossover junction endonuclease EME1; helix-hairpi 100.0
2ziu_A311 MUS81 protein; helix-hairpin-helix, alternative sp 100.0
2zix_A307 Crossover junction endonuclease MUS81; helix-hairp 100.0
2bgw_A219 XPF endonuclease; hydrolase, structure specific en 99.63
1j23_A143 HEF nuclease, ATP-dependent RNA helicase, putative 99.07
4gfj_A 685 Topoisomerase V; helix-hairpin-helix, DNA repair e 95.18
1x2i_A75 HEF helicase/nuclease; alpha helix, helix-hairpin- 92.02
1z00_B84 DNA repair endonuclease XPF; helix-hairpin-helix, 88.86
2a1j_A63 DNA repair endonuclease XPF; XPF, xeroderma pigmen 88.57
1z00_A89 DNA excision repair protein ERCC-1; helix-hairpin- 86.68
2a1j_B91 DNA excision repair protein ERCC-1; XPF, xeroderma 84.01
1kft_A78 UVRC, excinuclease ABC subunit C; helix-hairpin-he 80.23
>2ziu_B Crossover junction endonuclease EME1; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Homo sapiens} PDB: 2ziw_B 2zix_B 2ziv_B Back     alignment and structure
Probab=100.00  E-value=2.2e-61  Score=503.43  Aligned_cols=289  Identities=19%  Similarity=0.259  Sum_probs=227.0

Q ss_pred             hccCCccceEEEEEcccccccCCchHHHHHHHhhCCCeEEEeecCCCceEEEEccCCCCCCCCCCCccccCeEEEEecHH
Q 008500          255 AKGKFAQDSIVTEIDAKVVELGSVGGHLLTRFAEKRFKYRIASNPIERSIVWTMPVPEHISQISPQGMEIPYILLIYEAE  334 (563)
Q Consensus       255 ~k~k~~lK~mvVvID~~lle~~s~GgqLl~~L~~lgv~~~I~s~pIp~sI~WrRkVp~~~~~~~~~~~eEp~VLv~l~ae  334 (563)
                      ++|++|+|+|+|+||++|++ .++|++|++.|+++||+|.|++++||++|+|+|++++ ++ +...|++|+|||++++|+
T Consensus        14 ~~p~eclk~~~v~lD~~ll~-~~~g~~ll~~L~~~~~~~~i~~~~ip~sI~WrRkv~~-~~-d~~~~~~E~~vl~~l~a~   90 (341)
T 2ziu_B           14 PNSEECLKHIIVVLDPVLLQ-MEGGGQLLGALQTMECRCVIEAQAVPCSVTWRRRAGP-SE-DREDWVEEPTVLVLLRAE   90 (341)
T ss_dssp             ----CCGGGCEEEECHHHHT-STTHHHHHHHHHHSSCEEEECCCSSTTEEEEEC-----------CCCBCSCEEEEEEHH
T ss_pred             CChHHhcceEEEEEChHHhh-cccHHHHHHHHHhCCCeEEEEecCCCceEEEEEecCC-CC-CcccceEccEEEEEEEHH
Confidence            57899999999999999999 6799999999999999999999999999999999988 43 346788999999999999


Q ss_pred             HHHHHHhcC-------------chhHHHHHHHhhCCCCcEEEEeccchHHHHHHhh--hhhcC------------CC--C
Q 008500          335 EFCNLVLNE-------------SLMDHVSLVRRHYPSHTICYLTNRLMAHISKKEK--ERYKN------------PA--N  385 (563)
Q Consensus       335 eFv~lI~d~-------------~L~e~v~rLk~~~P~~kliyLVEGL~~ylrKr~~--~qyk~------------~~--~  385 (563)
                      +|++||.++             +|.+||.+|+++||++++||||+||++|+++++.  ++|..            ..  .
T Consensus        91 eF~~~v~~~~~~~~~~~~~~~~tL~~~v~~l~~~~p~~~~~llI~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (341)
T 2ziu_B           91 AFVSMIDNGKQGSLDSTMKGKETLQGFVTDITAKTAGKALSLVIVDQEKCFSAQNPPRRGKQGANKQTKKQQQRQPEASI  170 (341)
T ss_dssp             HHHHHHHCCC------------CCTHHHHHHHHHHTSCCEEEEEECCC--------------------------------
T ss_pred             HHHHHHhhcccccccccccccchHHHHHHHHHhhCCCCeEEEEEecHHHHHHhhhhhhhhhhhhcccccccccccccCCC
Confidence            999999983             8999999999999999999999999999985332  12210            00  0


Q ss_pred             CCCCCCCcHHHHHHHHHHhhceeEEEEcCCHHHHHHHHHHHHHHHHhccccccccccccccCCceecc---Cccc---cC
Q 008500          386 NSGWRRPPVEEVLAKLTTHFFRVHSRQCIDEAEVAEHVVGLTSSLASCQFRKKLTRLSVNANGSLISK---DSVD---KN  459 (563)
Q Consensus       386 ~~~~~rp~VEeALlqLQl~~~~Vh~~~~~d~~Eta~~I~~lTKaIA~~PyKk~~~~~s~~~~g~~v~k---~~V~---kg  459 (563)
                      ...++++.||+||+.||+.+ ++|+..+.+++|+++||++||++|+++|||+.+....   ..||+..   ++|+   +|
T Consensus       171 ~~~~~~~~ie~Al~~lqv~~-~~~v~~t~~~~Et~~~l~~~T~~Ia~~pyk~~r~~~~---~~~~~~~~~~~~vk~~~~~  246 (341)
T 2ziu_B          171 GSMVSRVDAEEALVDLQLHT-EAQAQIVQSWKELADFTCAFTKAVAEAPFKKLRDETT---FSFCLESDWAGGVKVDLAG  246 (341)
T ss_dssp             ----CHHHHHHHHHHHHHHC-SCBCCEESSHHHHHHHHHHHHHHHHCCC---CCSCCH---HHHHTSCCTTCCBCCCTTC
T ss_pred             CCCCCHHHHHHHHHHheeec-CEEEEEeCCHHHHHHHHHHHHHHHHhCcchhhhccCC---cceeecCccccccccCCCC
Confidence            12345567899999999975 7777777899999999999999999999998775321   2244443   2343   48


Q ss_pred             CCchHHHHHHHhhccCCCHHHHHHHHHhCCCHHHHHHHhcCCCcChHHHHhhhhcccccCCC---CCcccccHHHHHHHH
Q 008500          460 LIKKSPWLKALVSIPKVQPRYAIAIWKKYPTMKALLSIYMDPSKSVHEKEFLLKDLTVDGLL---GDNRKLGEVCSKRVY  536 (563)
Q Consensus       460 ~~l~dvW~rqLqQI~rVS~eiA~AIv~~YPSP~~Lv~AY~~cs~Se~Eke~LLadlki~g~~---g~~RRIGpaLSrRIY  536 (563)
                      .+++++|++|||||||||+++|.||+++||||++|++||++|. +++|++.||+|+++..+.   .+.|||||+||+|||
T Consensus       247 ~~~~d~w~~~L~qi~gVS~ekA~aI~~~YPTp~~L~~Ay~~~~-~~~e~~~lL~~~~~~~~~g~~~~~r~iG~~lS~rI~  325 (341)
T 2ziu_B          247 RGLALVWRRQIQQLNRVSLEMASAVVNAYPSPQLLVQAYQQCF-SDKERQNLLADIQVRRGEGVTSTSRRIGPELSRRIY  325 (341)
T ss_dssp             TTHHHHHHHHHTTSTTCCHHHHHHHHHHSCSHHHHHHHHHTCS-CHHHHTTTTTTCBTTTTC----CCCBCCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHccCCCHHHHHHHHHHCCCHHHHHHHHHhcC-ChHHHHHHHHhhhcccccCCcccCCccCHHHHHHHH
Confidence            8999999999999999999999999999999999999999984 678899999999986433   367999999999999


Q ss_pred             HHHhcCCCCcccccc
Q 008500          537 RILIAQSGSIKTDDI  551 (563)
Q Consensus       537 ~vfts~Dp~l~ld~~  551 (563)
                      ++||++||+++||.+
T Consensus       326 ~~f~~~dp~~~ld~~  340 (341)
T 2ziu_B          326 LQMTTLQPHLSLDSA  340 (341)
T ss_dssp             HHHHCSCTTCBCCC-
T ss_pred             HHHhcCCcchhccCC
Confidence            999999999999965
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A Back     alignment and structure
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens} Back     alignment and structure
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A Back     alignment and structure
>1j23_A HEF nuclease, ATP-dependent RNA helicase, putative; structure-specific endonuclease, hydrolase; 1.78A {Pyrococcus furiosus} SCOP: c.52.1.20 PDB: 1j22_A 1j24_A 1j25_A Back     alignment and structure
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19} Back     alignment and structure
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5 Back     alignment and structure
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* Back     alignment and structure
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* Back     alignment and structure
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 Back     alignment and structure
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 Back     alignment and structure
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query563
d2bgwa2133 XPF endonuclease {Aeropyrum pernix [TaxId: 56636]} 99.07
d1j23a_131 Putative ATP-dependent RNA helicase Hef, nuclease 99.03
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 95.1
d2a1ja162 DNA repair endonuclease XPF {Human (Homo sapiens) 94.78
d2bgwa170 DNA repair endonuclease XPF {Aeropyrum pernix [Tax 93.82
d1x2ia168 ATP-dependent RNA helicase PF2015 {Pyrococcus furi 92.7
d2a1jb178 DNA excision repair protein ERCC-1 {Human (Homo sa 90.82
d1bvsa271 DNA helicase RuvA subunit, middle domain {Mycobact 90.62
d1cuka278 DNA helicase RuvA subunit, middle domain {Escheric 89.25
d1ixra173 DNA helicase RuvA subunit, middle domain {Thermus 86.83
>d2bgwa2 c.52.1.20 (A:16-148) XPF endonuclease {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: Restriction endonuclease-like
family: XPF/Rad1/Mus81 nuclease
domain: XPF endonuclease
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.07  E-value=1.1e-09  Score=97.73  Aligned_cols=128  Identities=13%  Similarity=0.156  Sum_probs=103.4

Q ss_pred             EEEEcccccccCCchHHHHHHHhhCCCeEEEeecCCCceEEEEccCCCCCCCCCCCccccCeEEEEecHHHHHHHHhcCc
Q 008500          265 VTEIDAKVVELGSVGGHLLTRFAEKRFKYRIASNPIERSIVWTMPVPEHISQISPQGMEIPYILLIYEAEEFCNLVLNES  344 (563)
Q Consensus       265 vVvID~~lle~~s~GgqLl~~L~~lgv~~~I~s~pIp~sI~WrRkVp~~~~~~~~~~~eEp~VLv~l~aeeFv~lI~d~~  344 (563)
                      +++||.+-..     ..+...|...|+.+.+..+++ |++.|..                .+++.+.+.+||+.+|.+|+
T Consensus         5 ~IiiD~RE~~-----s~~~~~l~~~gi~~~~~~L~~-GDy~i~~----------------~~iIERKt~~Dl~~Si~dgR   62 (133)
T d2bgwa2           5 RVYVDVREER-----SPVPSILESLGVQVIPKQLPM-GDYLVSD----------------SIIVERKTSSDFAKSLFDGR   62 (133)
T ss_dssp             EEEEETTTTT-----SSHHHHHHHTTCEEEEECCSS-SSEEEET----------------TEEEEEEEHHHHHHHHHHSH
T ss_pred             EEEEECCCCc-----chhhHHHHHCCCEEEEEEcCC-cCEEEec----------------CEEEEEechhHhhhhccCCh
Confidence            5679998643     237888999999999999998 9999953                26889999999999999999


Q ss_pred             hhHHHHHHHhhCCCCcEEEEeccchHHHHHHhhhhhcCCCCCCCCCCCcHHHHHHHHHHhhceeEEEEcCCHHHHHHHHH
Q 008500          345 LMDHVSLVRRHYPSHTICYLTNRLMAHISKKEKERYKNPANNSGWRRPPVEEVLAKLTTHFFRVHSRQCIDEAEVAEHVV  424 (563)
Q Consensus       345 L~e~v~rLk~~~P~~kliyLVEGL~~ylrKr~~~qyk~~~~~~~~~rp~VEeALlqLQl~~~~Vh~~~~~d~~Eta~~I~  424 (563)
                      |.+|+.||++++  .+++|||||-.....      +       ......+..||+.+|+.+ ++++..+.+.+|||.||.
T Consensus        63 ~~eQ~~rL~~~~--~~~~~LIEg~~~~~~------~-------~~~~~~l~~al~~l~~~~-g~~vi~t~~~~eTa~~l~  126 (133)
T d2bgwa2          63 LFEQASRLAEHY--ETVFIIVEGPPVPRR------Y-------RGRERSLYAAMAALQLDY-GIRLMNTMDPKGTALVIE  126 (133)
T ss_dssp             HHHHHHHHHHHC--SEEEEEEESCSSCGG------G-------TTTHHHHHHHHHHHHHHS-CCEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHHhcC--CCeEEEEEcCcchhh------c-------cCCHHHHHHHHHHHHHHc-CceEEEeCCHHHHHHHHH
Confidence            999999999987  479999998542111      0       011235788999999986 788878889999999999


Q ss_pred             HHHHHH
Q 008500          425 GLTSSL  430 (563)
Q Consensus       425 ~lTKaI  430 (563)
                      .|+|..
T Consensus       127 ~lak~~  132 (133)
T d2bgwa2         127 SLARLS  132 (133)
T ss_dssp             HHHHHH
T ss_pred             HHhccc
Confidence            999864
>d1j23a_ c.52.1.20 (A:) Putative ATP-dependent RNA helicase Hef, nuclease domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure