Citrus Sinensis ID: 008514
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 563 | ||||||
| 255536871 | 589 | conserved hypothetical protein [Ricinus | 0.992 | 0.949 | 0.808 | 0.0 | |
| 225451469 | 591 | PREDICTED: uncharacterized protein LOC10 | 0.992 | 0.945 | 0.774 | 0.0 | |
| 147853498 | 591 | hypothetical protein VITISV_016786 [Viti | 0.992 | 0.945 | 0.773 | 0.0 | |
| 225451471 | 591 | PREDICTED: uncharacterized protein LOC10 | 0.992 | 0.945 | 0.768 | 0.0 | |
| 312282435 | 579 | unnamed protein product [Thellungiella h | 0.980 | 0.953 | 0.772 | 0.0 | |
| 297807437 | 579 | nodulin family protein [Arabidopsis lyra | 0.980 | 0.953 | 0.760 | 0.0 | |
| 15241312 | 579 | major facilitator protein [Arabidopsis t | 0.980 | 0.953 | 0.757 | 0.0 | |
| 18395988 | 584 | major facilitator protein [Arabidopsis t | 0.985 | 0.950 | 0.761 | 0.0 | |
| 449441700 | 576 | PREDICTED: uncharacterized protein LOC10 | 0.998 | 0.975 | 0.721 | 0.0 | |
| 297828556 | 583 | nodulin family protein [Arabidopsis lyra | 0.985 | 0.951 | 0.754 | 0.0 |
| >gi|255536871|ref|XP_002509502.1| conserved hypothetical protein [Ricinus communis] gi|223549401|gb|EEF50889.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 938 bits (2424), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/589 (80%), Positives = 518/589 (87%), Gaps = 30/589 (5%)
Query: 1 MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAK 60
MG+ QER +F NNRWLVFVAAMWIQSCAG+GYLFGSISPVIKSSLNYNQ+Q+A LGVAK
Sbjct: 1 MGRLQERLYAFINNRWLVFVAAMWIQSCAGVGYLFGSISPVIKSSLNYNQRQLASLGVAK 60
Query: 61 DLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVG 120
DLGDSVGFLAGSL E+LP+WGALLVGALQN +GYGWVWL+VTG+APVLPLW MCILIFVG
Sbjct: 61 DLGDSVGFLAGSLSEILPLWGALLVGALQNLVGYGWVWLVVTGKAPVLPLWVMCILIFVG 120
Query: 121 NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMV 180
NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGL GAILTQ+YTMIH+P+HA+LIFMV
Sbjct: 121 NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMIHSPNHASLIFMV 180
Query: 181 AVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNH 240
AVGPAMVV+ LMFIIRPVGGHRQVRPSD +SFTF+YSVCLLLAAYLMGVML+EDLVDL+H
Sbjct: 181 AVGPAMVVVTLMFIIRPVGGHRQVRPSDGTSFTFVYSVCLLLAAYLMGVMLLEDLVDLSH 240
Query: 241 TVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILS 300
T+II+FTV+LFVLL +PIVIPI LSFF E DPAEE LL + E E GKS Q+ EVILS
Sbjct: 241 TLIIVFTVVLFVLLLLPIVIPIWLSFFHEPRDPAEETLLPESEKQEAGKSEQDGHEVILS 300
Query: 301 EVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIK 360
EVEDEKPK+VDLLPASER+KRIAQLQ +LF AAAEGAVR+KRRRGPHRGEDFTL QALIK
Sbjct: 301 EVEDEKPKEVDLLPASERKKRIAQLQTKLFQAAAEGAVRIKRRRGPHRGEDFTLMQALIK 360
Query: 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEI 420
ADFWLIF SLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEI
Sbjct: 361 ADFWLIFVSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEI 420
Query: 421 IVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASEL 480
IVRDYAYPRP+AMAVAQFVMAIGH+F WPG MY+GTLLIGLGYGAHWAIVPAAASEL
Sbjct: 421 IVRDYAYPRPIAMAVAQFVMAIGHVFFAFDWPGTMYIGTLLIGLGYGAHWAIVPAAASEL 480
Query: 481 FGLKKFGALYNFLTLANP------------------------------AGSIFTSMPRVD 510
FGLKKFGALYNFLTLANP AGS+F+ + D
Sbjct: 481 FGLKKFGALYNFLTLANPAGSLVFSGLIASRIYDREAERQAHEHHMRTAGSLFSGLFGPD 540
Query: 511 EPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 559
EPLKCEG++CYFLTSMIMSG CI+AVILS+ILVHRT VY++LYGKSR+
Sbjct: 541 EPLKCEGAVCYFLTSMIMSGFCIIAVILSLILVHRTKIVYANLYGKSRT 589
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451469|ref|XP_002270737.1| PREDICTED: uncharacterized protein LOC100244537 [Vitis vinifera] gi|296082334|emb|CBI21339.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/591 (77%), Positives = 505/591 (85%), Gaps = 32/591 (5%)
Query: 1 MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAK 60
M + ERF +F NNRWLVFVAAMWIQSCAGIGYLFGS+SPV+KSSLNYNQ+QIA+LGVAK
Sbjct: 1 MIRLPERFRAFLNNRWLVFVAAMWIQSCAGIGYLFGSLSPVMKSSLNYNQRQIAKLGVAK 60
Query: 61 DLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVG 120
D+GDS+GF GSLCE+LP+W LLVGALQNFIGYGWVWLIVT R P LPLWA+CILIFVG
Sbjct: 61 DIGDSIGFWIGSLCEILPLWAVLLVGALQNFIGYGWVWLIVTHRVPTLPLWAICILIFVG 120
Query: 121 NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMV 180
NGETYFNT LVSCVQNFPKSRGPVVGILKGFAGL GAILTQ+YTMIH+PDHA+L+FMV
Sbjct: 121 TNGETYFNTVDLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMIHSPDHASLVFMV 180
Query: 181 AVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNH 240
AVGP MVV ALMFI+RPVGGHRQVRP+D SFTFIY VCLLLAAYLMGVMLV+DLV L+H
Sbjct: 181 AVGPIMVVFALMFIVRPVGGHRQVRPTDDLSFTFIYGVCLLLAAYLMGVMLVQDLVHLSH 240
Query: 241 TVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILS 300
TV+ IFT ILFVL+ PIVIP+ LSFF E P EALL++P+ EPGKS Q+ EVI S
Sbjct: 241 TVVTIFTAILFVLILAPIVIPVSLSFFSEPKAPEAEALLTEPQKDEPGKSEQDATEVIFS 300
Query: 301 EVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIK 360
EVEDEKPK+VDLLPASER+KRIA LQA+LF AAAEGAVRVKRRRGPHRGEDFTL QALIK
Sbjct: 301 EVEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRGPHRGEDFTLMQALIK 360
Query: 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEI 420
ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGY NTHIFVSMISIWNFLGR+GGGYFSE+
Sbjct: 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYHNTHIFVSMISIWNFLGRIGGGYFSEM 420
Query: 421 IVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASEL 480
IVRD+AYPRPVAMA AQ +MA+GH+F MGWPGAM++GTLLIGLGYGAHWAIVPAAASEL
Sbjct: 421 IVRDHAYPRPVAMAAAQVIMALGHLFFAMGWPGAMHIGTLLIGLGYGAHWAIVPAAASEL 480
Query: 481 FGLKKFGALYNFLTLANPA--------------------------------GSIFTSMPR 508
FGLK FGALYNFLTLANPA GSIF+ M
Sbjct: 481 FGLKNFGALYNFLTLANPAGSLVFSGVIASSIYDREAEKQAHHHHHLQQNVGSIFSGMLS 540
Query: 509 VDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 559
+D+P KCEGSIC+FLTSMIMSGLCI+AV+LSM+LVHRT VY++LYGKSR+
Sbjct: 541 MDDPPKCEGSICFFLTSMIMSGLCIIAVVLSMVLVHRTKIVYANLYGKSRT 591
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147853498|emb|CAN82292.1| hypothetical protein VITISV_016786 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 920 bits (2377), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/591 (77%), Positives = 504/591 (85%), Gaps = 32/591 (5%)
Query: 1 MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAK 60
M + ER +F NNRWLVFVAAMWIQSCAGIGYLFGS+SPV+KSSLNYNQ+QIA+LGVAK
Sbjct: 1 MIRLPERXRAFXNNRWLVFVAAMWIQSCAGIGYLFGSLSPVMKSSLNYNQRQIAKLGVAK 60
Query: 61 DLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVG 120
D+GDS+GF GSLCE+LP+W LLVGALQNFIGYGWVWLIVT R P LPLWA+CILIFVG
Sbjct: 61 DIGDSIGFWIGSLCEILPLWAVLLVGALQNFIGYGWVWLIVTHRVPTLPLWAICILIFVG 120
Query: 121 NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMV 180
NGETYFNT LVSCVQNFPKSRGPVVGILKGFAGL GAILTQ+YTMIH+PDHA+L+FMV
Sbjct: 121 TNGETYFNTVDLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMIHSPDHASLVFMV 180
Query: 181 AVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNH 240
AVGP MVV ALMFI+RPVGGHRQVRP+D SFTFIY VCLLLAAYLMGVMLV+DLV L+H
Sbjct: 181 AVGPIMVVFALMFIVRPVGGHRQVRPTDDLSFTFIYGVCLLLAAYLMGVMLVQDLVHLSH 240
Query: 241 TVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILS 300
TV+ IFT ILFVL+ PIVIP+ LSFF E P EALL++P+ EPGKS Q+ EVI S
Sbjct: 241 TVVTIFTAILFVLILAPIVIPVSLSFFSEPKAPEAEALLTEPQKDEPGKSEQDATEVIFS 300
Query: 301 EVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIK 360
EVEDEKPK+VDLLPASER+KRIA LQA+LF AAAEGAVRVKRRRGPHRGEDFTL QALIK
Sbjct: 301 EVEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRGPHRGEDFTLMQALIK 360
Query: 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEI 420
ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGY NTHIFVSMISIWNFLGR+GGGYFSE+
Sbjct: 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYHNTHIFVSMISIWNFLGRIGGGYFSEM 420
Query: 421 IVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASEL 480
IVRD+AYPRPVAMA AQ +MA+GH+F MGWPGAM++GTLLIGLGYGAHWAIVPAAASEL
Sbjct: 421 IVRDHAYPRPVAMAAAQVIMALGHLFFAMGWPGAMHIGTLLIGLGYGAHWAIVPAAASEL 480
Query: 481 FGLKKFGALYNFLTLANPA--------------------------------GSIFTSMPR 508
FGLK FGALYNFLTLANPA GSIF+ M
Sbjct: 481 FGLKNFGALYNFLTLANPAGSLVFSGVIASSIYDREAEKQAHHHHHLQQNVGSIFSGMLS 540
Query: 509 VDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 559
+D+P KCEGSIC+FLTSMIMSGLCI+AV+LSM+LVHRT VY++LYGKSR+
Sbjct: 541 MDDPPKCEGSICFFLTSMIMSGLCIIAVVLSMVLVHRTKIVYANLYGKSRT 591
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451471|ref|XP_002270809.1| PREDICTED: uncharacterized protein LOC100266857 [Vitis vinifera] gi|296082332|emb|CBI21337.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/591 (76%), Positives = 505/591 (85%), Gaps = 32/591 (5%)
Query: 1 MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAK 60
M + ERF +FFNNRWLVFVAAMWIQSCAGIGYLFGS+SPVIKSSLNYNQ+QIARLGVAK
Sbjct: 1 MIRLPERFRAFFNNRWLVFVAAMWIQSCAGIGYLFGSLSPVIKSSLNYNQRQIARLGVAK 60
Query: 61 DLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVG 120
D+GDSVGF GSLCE+LP+W ALL+GALQN IGYGWVWLI+T R P LPLWA+CILIFVG
Sbjct: 61 DIGDSVGFWIGSLCEILPLWVALLIGALQNLIGYGWVWLIITHRVPTLPLWAICILIFVG 120
Query: 121 NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMV 180
NGETYFNT LVSCVQNFPKSRGPVVGILKGF+GL GAILTQ+YTMIH+PDHA+L+FMV
Sbjct: 121 TNGETYFNTVDLVSCVQNFPKSRGPVVGILKGFSGLSGAILTQIYTMIHSPDHASLVFMV 180
Query: 181 AVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNH 240
AVGP MVV ALMFI+RPVGGHRQVRP+D SFTFIY VCL+LAAYLMGVML++DLVDL+H
Sbjct: 181 AVGPTMVVFALMFIVRPVGGHRQVRPTDDLSFTFIYGVCLVLAAYLMGVMLLQDLVDLSH 240
Query: 241 TVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILS 300
TV+ IFT ILFVL+ +PIVIP+ LSF E P EALL++P+ EPGKS Q+ EVI S
Sbjct: 241 TVVTIFTAILFVLVLVPIVIPVSLSFPSEPKAPELEALLTEPQKEEPGKSEQDATEVIFS 300
Query: 301 EVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIK 360
E+EDEKPK+VDLLPASER+KRIA LQA+LF AAAEGAVRVKRRRGP RGEDFTL QALIK
Sbjct: 301 ELEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRGPRRGEDFTLMQALIK 360
Query: 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEI 420
ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGR+GGGYFSE+
Sbjct: 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRIGGGYFSEM 420
Query: 421 IVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASEL 480
IVRDYAYPRPVAMAVAQ MA+GH+F MGWPG++Y+GTLLIGLGYGAHWAIVPAAASEL
Sbjct: 421 IVRDYAYPRPVAMAVAQVTMALGHLFFAMGWPGSLYIGTLLIGLGYGAHWAIVPAAASEL 480
Query: 481 FGLKKFGALYNFLTLANPA--------------------------------GSIFTSMPR 508
FGLK FGALYNF+ LANP GSIF+ M
Sbjct: 481 FGLKNFGALYNFINLANPTGSLVFSGVIASSIYDREAEKQAHHHHHQQQNMGSIFSGMLS 540
Query: 509 VDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 559
VD+P KCEGSIC+FLTSMIMSG+CI+AV+LSM+LVHRT VY++LYGKSR+
Sbjct: 541 VDDPPKCEGSICFFLTSMIMSGICIIAVVLSMVLVHRTKVVYANLYGKSRT 591
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|312282435|dbj|BAJ34083.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
|---|
Score = 879 bits (2272), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/577 (77%), Positives = 501/577 (86%), Gaps = 25/577 (4%)
Query: 5 QERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD 64
+E+FVSF NNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQK++ARLGVAKDLGD
Sbjct: 6 REKFVSFINNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKELARLGVAKDLGD 65
Query: 65 SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGE 124
SVGFLAGSL E+LP+W ALLVGA+QN +GYGWVWLIVTGRAP+LPLWAMCILIFVGNNGE
Sbjct: 66 SVGFLAGSLSEILPLWAALLVGAVQNLVGYGWVWLIVTGRAPILPLWAMCILIFVGNNGE 125
Query: 125 TYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGP 184
TYFNT +LVS V NFPKSRGPVVGILKGFAGLGGAIL+Q+YT +H+PD A+LI MVAVGP
Sbjct: 126 TYFNTGSLVSGVHNFPKSRGPVVGILKGFAGLGGAILSQIYTTMHSPDPASLIVMVAVGP 185
Query: 185 AMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVII 244
A+VV LMF IRPVGGHRQ+RP+D +SFTFIY VC+LLAAYLM VML+EDLV ++H +I
Sbjct: 186 AVVVAFLMFFIRPVGGHRQIRPTDGASFTFIYGVCILLAAYLMAVMLIEDLVVVSHNIIT 245
Query: 245 IFTVILFVLLFIPIVIPIILSFFLERTDPA---EEALLSKPENMEPGKSNQETDEVILSE 301
+FT++LFV+L +PI++PI+ SFF E PA EE L+ K EN EPG Q+T ++ILSE
Sbjct: 246 VFTIVLFVILVVPILVPIMTSFFTESNAPADTVEEPLVPKRENQEPG---QQTPDLILSE 302
Query: 302 VEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKA 361
VEDEKPK++DLLPASER KRIA LQARL AAAEGAVRVKR RGPHRGEDFTLTQAL+KA
Sbjct: 303 VEDEKPKEMDLLPASERHKRIAHLQARLMQAAAEGAVRVKRHRGPHRGEDFTLTQALVKA 362
Query: 362 DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEII 421
DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH+FVSMISIWNFLGR+GGGYFSE+I
Sbjct: 363 DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWNFLGRIGGGYFSELI 422
Query: 422 VRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELF 481
VRDYAYPRPVAMAVAQ VM++GH+F GWPGAMY+GTLLIGLGYGAHWAIVPA ASELF
Sbjct: 423 VRDYAYPRPVAMAVAQLVMSVGHVFFAFGWPGAMYIGTLLIGLGYGAHWAIVPATASELF 482
Query: 482 GLKKFGALYNFLTLANPAGSI-------------------FTSMPRVDEPLKCEGSICYF 522
GLKKFGALYNFLTLANPAGS+ S+ D+ L+CEG ICYF
Sbjct: 483 GLKKFGALYNFLTLANPAGSLVFSGLIASTIYDREAERQAHVSVFDPDDALRCEGYICYF 542
Query: 523 LTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 559
LTS+IMSG CI+A ILSMILV RT +VYSHLYGK+R+
Sbjct: 543 LTSLIMSGFCIIACILSMILVRRTKSVYSHLYGKTRT 579
|
Source: Thellungiella halophila Species: Eutrema halophilum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807437|ref|XP_002871602.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] gi|297317439|gb|EFH47861.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 873 bits (2256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/577 (76%), Positives = 501/577 (86%), Gaps = 25/577 (4%)
Query: 5 QERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD 64
+E+FVSF NNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQK++ARLGVAKDLGD
Sbjct: 6 REKFVSFINNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKELARLGVAKDLGD 65
Query: 65 SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGE 124
SVGF+AG+L E+LP+W ALLVGA+QN IGYGWVWLI TGRAP+LPLWAMC+LIFVGNNGE
Sbjct: 66 SVGFIAGTLSEILPLWAALLVGAVQNLIGYGWVWLITTGRAPILPLWAMCVLIFVGNNGE 125
Query: 125 TYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGP 184
TYFNT ALVS VQNFPKSRGPVVGILKGFAGLGGAI++Q+YTMIH+ + A+LI MVAV P
Sbjct: 126 TYFNTGALVSGVQNFPKSRGPVVGILKGFAGLGGAIISQIYTMIHSSNPASLILMVAVTP 185
Query: 185 AMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVII 244
A+VV+ LMF IRPVGGH+Q+RPSD +SFTFIY VCLLLAAYLM VML++DLV ++H VI
Sbjct: 186 AVVVVCLMFFIRPVGGHKQIRPSDGASFTFIYGVCLLLAAYLMAVMLIQDLVVVSHNVIT 245
Query: 245 IFTVILFVLLFIPIVIPIILSFFLERTDPA---EEALLSKPENMEPGKSNQETDEVILSE 301
+FT++LFV+L +PI++PI+ SFF E +P EE L+ K E+ EPG +T ++ILSE
Sbjct: 246 MFTIVLFVILVVPILVPIMTSFFTETNEPDDTIEEPLVPKREDQEPG---MQTPDLILSE 302
Query: 302 VEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKA 361
VEDEKPKDVDLLPASER KRIA LQA+L AAAEGAVRVKRRRGPHRGEDFTLTQAL+KA
Sbjct: 303 VEDEKPKDVDLLPASERHKRIAHLQAQLMQAAAEGAVRVKRRRGPHRGEDFTLTQALVKA 362
Query: 362 DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEII 421
DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH+ VSMISIWNFLGR+GGGYFSE++
Sbjct: 363 DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVLVSMISIWNFLGRIGGGYFSELV 422
Query: 422 VRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELF 481
VRDYAYPRPVAMAVAQ +M++GHIF GWPGAMY+GTLLIGLGYGAHWAIVPA ASELF
Sbjct: 423 VRDYAYPRPVAMAVAQLIMSVGHIFFAYGWPGAMYIGTLLIGLGYGAHWAIVPATASELF 482
Query: 482 GLKKFGALYNFLTLANPAGS-IFTSMPRV------------------DEPLKCEGSICYF 522
GLKKFGALYNFLTLANPAGS +F+ M D+ L+C GSIC+F
Sbjct: 483 GLKKFGALYNFLTLANPAGSLVFSGMIASSIYDREAERQAHGSVFDPDDALRCNGSICFF 542
Query: 523 LTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 559
LTS++MSG CI+A ILSMILV RT +VY+HLYGK+R+
Sbjct: 543 LTSLVMSGFCIIACILSMILVRRTKSVYTHLYGKTRT 579
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15241312|ref|NP_196916.1| major facilitator protein [Arabidopsis thaliana] gi|9757793|dbj|BAB08291.1| nodulin-like protein [Arabidopsis thaliana] gi|332004607|gb|AED91990.1| major facilitator protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/577 (75%), Positives = 501/577 (86%), Gaps = 25/577 (4%)
Query: 5 QERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD 64
+E+FVSF NNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQK+++RLGVAKDLGD
Sbjct: 6 REKFVSFINNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKELSRLGVAKDLGD 65
Query: 65 SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGE 124
SVGF+AG+L E+LP+W ALLVGA+QN IGYGWVWLIVTGRAP+LPLWAMC+LIFVGNNGE
Sbjct: 66 SVGFIAGTLSEILPLWAALLVGAVQNLIGYGWVWLIVTGRAPILPLWAMCVLIFVGNNGE 125
Query: 125 TYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGP 184
TYFNT ALVS VQNFPKSRGPVVGILKGFAGLGGAI++Q+YTMIH+ + A+LI MVAV P
Sbjct: 126 TYFNTGALVSGVQNFPKSRGPVVGILKGFAGLGGAIISQIYTMIHSSNPASLILMVAVTP 185
Query: 185 AMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVII 244
A+VV+ LMF IRPVGGH+Q+RP+D +SFTFIY VCLLLAAYLM VML++DLV ++H VI
Sbjct: 186 AVVVVCLMFFIRPVGGHKQIRPTDGASFTFIYGVCLLLAAYLMSVMLIQDLVVVSHNVIT 245
Query: 245 IFTVILFVLLFIPIVIPIILSFFLERTDPA---EEALLSKPENMEPGKSNQETDEVILSE 301
+FT++LFV+L +PI++PI+ SFF E +P EE L+ K E+ EPG +T ++ILSE
Sbjct: 246 VFTIVLFVILVVPILVPIMTSFFTETNEPDDTIEEPLVPKREDQEPG---LQTPDLILSE 302
Query: 302 VEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKA 361
VEDEKPKDVDLLPASER KRIA LQA+L AAAEGAVRV RRRGPHRGEDFTLTQAL+KA
Sbjct: 303 VEDEKPKDVDLLPASERHKRIAHLQAQLMQAAAEGAVRVNRRRGPHRGEDFTLTQALVKA 362
Query: 362 DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEII 421
DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH+ VSMISIWNFLGR+GGGYFSE++
Sbjct: 363 DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVLVSMISIWNFLGRIGGGYFSELV 422
Query: 422 VRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELF 481
VRDYAYPRPVAMAVAQ +M++GHIF GWPGAMY+GTLLIGLGYGAHWAIVPA ASELF
Sbjct: 423 VRDYAYPRPVAMAVAQLIMSVGHIFFAYGWPGAMYIGTLLIGLGYGAHWAIVPATASELF 482
Query: 482 GLKKFGALYNFLTLANPAGS-IFTSMPRV------------------DEPLKCEGSICYF 522
GLKKFGALYNFLTLANPAGS +F+ M D+ L+C GSIC+F
Sbjct: 483 GLKKFGALYNFLTLANPAGSLVFSGMIASSIYDREAERQAHGSVFDPDDALRCNGSICFF 542
Query: 523 LTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 559
LTS+IMSG CI+A +LSMILV RT +VY+HLYGK+R+
Sbjct: 543 LTSLIMSGFCIIACMLSMILVRRTKSVYTHLYGKTRT 579
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18395988|ref|NP_566157.1| major facilitator protein [Arabidopsis thaliana] gi|6091732|gb|AAF03444.1|AC010797_20 unknown protein [Arabidopsis thaliana] gi|6513938|gb|AAF14842.1|AC011664_24 unknown protein [Arabidopsis thaliana] gi|22136036|gb|AAM91600.1| unknown protein [Arabidopsis thaliana] gi|23197760|gb|AAN15407.1| unknown protein [Arabidopsis thaliana] gi|332640216|gb|AEE73737.1| major facilitator protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 868 bits (2243), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/579 (76%), Positives = 496/579 (85%), Gaps = 24/579 (4%)
Query: 5 QERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD 64
+ER SF NNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQ++RLGVAKDLGD
Sbjct: 6 RERVKSFINNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQLSRLGVAKDLGD 65
Query: 65 SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGE 124
SVGFLAG+L E+LP+W ALLVG++QN +GYGWVWLIVTGRAP+LPLWAMCILIFVGNNGE
Sbjct: 66 SVGFLAGTLSEILPLWAALLVGSVQNLVGYGWVWLIVTGRAPILPLWAMCILIFVGNNGE 125
Query: 125 TYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGP 184
TYFNTAALVS VQNFPKSRGPVVGILKGFAGLGGAIL+QVYTMIH+ D A+LIFMVAV P
Sbjct: 126 TYFNTAALVSGVQNFPKSRGPVVGILKGFAGLGGAILSQVYTMIHSSDRASLIFMVAVAP 185
Query: 185 AMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVII 244
++VV+ LMF IRPVGGHRQ+R SD++SFT IY+VC+LLAAYLM VMLVED +DL+H++II
Sbjct: 186 SVVVVPLMFFIRPVGGHRQIRSSDATSFTVIYAVCILLAAYLMAVMLVEDFIDLSHSIII 245
Query: 245 IFTVILFVLLFIPIVIPIILSFFLERTDPA---EEALLSKPENMEPGKSN--QETDEVIL 299
FTV+LF +L +PI IPI S F TDP EE LL + +PG+S E+I
Sbjct: 246 AFTVVLFAILLVPIFIPIATSCFTASTDPCDTLEEPLLGDQQGQDPGQSTTPDHGPELIF 305
Query: 300 SEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALI 359
SEVEDEKPK+VDLLPA ER KRIAQLQA+L AAAEGAVRVKRRRGPHRGEDFTLTQAL+
Sbjct: 306 SEVEDEKPKEVDLLPAVERHKRIAQLQAKLMQAAAEGAVRVKRRRGPHRGEDFTLTQALV 365
Query: 360 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSE 419
KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH+FVSMISIWNFLGR+GGGYFSE
Sbjct: 366 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWNFLGRIGGGYFSE 425
Query: 420 IIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASE 479
+IVRDYAYPRPVA+AVAQ VM++GHIF GWPGAM++GTLLIGLGYGAHWAIVPA ASE
Sbjct: 426 LIVRDYAYPRPVAIAVAQLVMSVGHIFFAYGWPGAMHIGTLLIGLGYGAHWAIVPATASE 485
Query: 480 LFGLKKFGALYNFLTLANPAGS-IFT------------------SMPRVDEPLKCEGSIC 520
LFGLKKFGALYNFLTLANPAGS +F+ S+ D+ L+C GSIC
Sbjct: 486 LFGLKKFGALYNFLTLANPAGSLVFSGLIASSIYDREAERQAQGSLFNPDDVLRCRGSIC 545
Query: 521 YFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 559
YFLTS+IMSG C++A LSMILV RT VY++LYGK+R+
Sbjct: 546 YFLTSLIMSGFCLIAAALSMILVQRTKPVYTNLYGKTRN 584
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441700|ref|XP_004138620.1| PREDICTED: uncharacterized protein LOC101211655 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 862 bits (2228), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/575 (72%), Positives = 480/575 (83%), Gaps = 13/575 (2%)
Query: 1 MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAK 60
MG++ ++ V+F NNRWLVFVAA+W+QS AGIGYLFGSISP+IK++L+YNQ+QI+RLGVAK
Sbjct: 1 MGRWNDKLVAFINNRWLVFVAAIWLQSWAGIGYLFGSISPIIKTNLSYNQRQISRLGVAK 60
Query: 61 DLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVG 120
DLGDSVGFLA +L E+LP WG+LLVGA+ NF+GYGWVWLIVTGRAPVLPLWAMC L+F+G
Sbjct: 61 DLGDSVGFLAATLTEILPFWGSLLVGAIHNFVGYGWVWLIVTGRAPVLPLWAMCALVFIG 120
Query: 121 NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMV 180
NGETYFNT +LVSCVQNFPKSRGPVVGILKGFAGL GAILTQ Y + H+P+ ANLIFMV
Sbjct: 121 TNGETYFNTVSLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQTYAIFHSPESANLIFMV 180
Query: 181 AVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNH 240
AVGPA+V I +MF IRPV GHRQVRPSD SFT +Y VCLLLAAYLMGVML+EDLV L+
Sbjct: 181 AVGPALVAIGVMFFIRPVAGHRQVRPSDGMSFTSVYGVCLLLAAYLMGVMLIEDLVTLSP 240
Query: 241 TVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAE-EALLSKPENMEPGKSNQETDEVIL 299
VI IFTV++FV+L P IP+ L+ E T AE EALL E EP ++ + +EVI
Sbjct: 241 IVITIFTVVMFVILLTPFFIPVSLTLSSEATTYAEQEALLPPSEKEEPARTEPDGNEVIF 300
Query: 300 SEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALI 359
SEVEDEK + DLLPASER+KRIAQLQA+L AAAEGAVRVKRR+GP RGEDFTL QALI
Sbjct: 301 SEVEDEKSEGEDLLPASERQKRIAQLQAKLLQAAAEGAVRVKRRKGPRRGEDFTLGQALI 360
Query: 360 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSE 419
KADFWLIF S LLGSG+GLTVIDNLGQMSQSLGYDNTHIFVS+ISIWNFLGRVGGGY SE
Sbjct: 361 KADFWLIFSSHLLGSGTGLTVIDNLGQMSQSLGYDNTHIFVSLISIWNFLGRVGGGYLSE 420
Query: 420 IIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASE 479
I+VRD+AYPRP+AM +AQ +M GH+F+GMGWPGAMY+GTL+ GLGYGAHWAIVPA ASE
Sbjct: 421 IVVRDFAYPRPIAMTIAQVLMIFGHVFIGMGWPGAMYIGTLITGLGYGAHWAIVPATASE 480
Query: 480 LFGLKKFGALYNFLTLANPAGS-IFTSM-----------PRVDEPLKCEGSICYFLTSMI 527
LFGLKKFGALYNF+TL+ P GS +F+ + + P KCEG+IC+FLT MI
Sbjct: 481 LFGLKKFGALYNFITLSTPMGSLVFSGLIASSIYDSEAEKQAQGPHKCEGAICFFLTCMI 540
Query: 528 MSGLCIVAVILSMILVHRTTNVYSHLYGKSRSSNL 562
M G C +A ILS+ILVHRT VY +LYGKSR+S L
Sbjct: 541 MGGFCAIAAILSLILVHRTKGVYHNLYGKSRTSTL 575
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297828556|ref|XP_002882160.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] gi|297328000|gb|EFH58419.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 860 bits (2222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/578 (75%), Positives = 494/578 (85%), Gaps = 23/578 (3%)
Query: 5 QERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD 64
+ER SF NNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQ++RLGVAKDLGD
Sbjct: 6 RERVKSFINNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQLSRLGVAKDLGD 65
Query: 65 SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGE 124
SVGFLAG+L E+LP+W ALLVG++QN +GYGWVWLIVTGRAP+LPLWAMCILIFVGNNGE
Sbjct: 66 SVGFLAGTLSEILPLWAALLVGSVQNLVGYGWVWLIVTGRAPILPLWAMCILIFVGNNGE 125
Query: 125 TYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGP 184
TYFNTA LVS VQNFPKSRGPVVGILKGFAGLGGAIL+QVYTMIH+ D A+LIFMVAV P
Sbjct: 126 TYFNTATLVSGVQNFPKSRGPVVGILKGFAGLGGAILSQVYTMIHSSDRASLIFMVAVAP 185
Query: 185 AMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVII 244
++VV+ LMF IRPVGGHRQ+R SD++SFT IY+VC+LLAAYLM VMLVED +DL+H +I
Sbjct: 186 SVVVVPLMFFIRPVGGHRQIRSSDATSFTIIYAVCILLAAYLMAVMLVEDFIDLSHLIIT 245
Query: 245 IFTVILFVLLFIPIVIPIILSFFLERT--DPAEEALLSKPENMEPGKSN--QETDEVILS 300
FT++LF +L +PI IPI S F D EE L+ ++ +PG+S E+ILS
Sbjct: 246 AFTIVLFAILLVPIFIPIATSCFASTNPCDTLEEPLVGNQQSQDPGQSTTPDHGPELILS 305
Query: 301 EVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIK 360
EVEDEKPK+VDLLPA ER KRIAQLQA+L AAA+GAVRVKRRRGPHRGEDFTLTQAL+K
Sbjct: 306 EVEDEKPKEVDLLPALERHKRIAQLQAKLMQAAAKGAVRVKRRRGPHRGEDFTLTQALVK 365
Query: 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEI 420
ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH+FVSMISIWNFLGR+GGGYFSE+
Sbjct: 366 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWNFLGRIGGGYFSEL 425
Query: 421 IVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASEL 480
IVRDYAYPRPVA+AVAQ VM++GHIF GWPGAM++GTLLIGLGYGAHWAIVPA ASEL
Sbjct: 426 IVRDYAYPRPVAIAVAQLVMSVGHIFFAYGWPGAMHIGTLLIGLGYGAHWAIVPATASEL 485
Query: 481 FGLKKFGALYNFLTLANPAGS-IFT------------------SMPRVDEPLKCEGSICY 521
FGLKKFGALYNFLTLANPAGS +F+ S+ D+ L+C GSICY
Sbjct: 486 FGLKKFGALYNFLTLANPAGSLVFSGLIASSIYDREAERQAQGSLFNPDDVLRCRGSICY 545
Query: 522 FLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 559
FLTS+IMSG C++A LSMILV RT +VY++LYGK+RS
Sbjct: 546 FLTSLIMSGFCLIAAALSMILVQRTKSVYTNLYGKTRS 583
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 563 | ||||||
| TAIR|locus:2078643 | 584 | AT3G01930 [Arabidopsis thalian | 0.889 | 0.857 | 0.754 | 1.3e-205 | |
| TAIR|locus:2174683 | 579 | AT5G14120 [Arabidopsis thalian | 0.886 | 0.861 | 0.747 | 5.4e-205 | |
| TAIR|locus:2159752 | 540 | AT5G50520 [Arabidopsis thalian | 0.396 | 0.412 | 0.619 | 9.2e-135 | |
| TAIR|locus:2832385 | 540 | AT5G50630 [Arabidopsis thalian | 0.396 | 0.412 | 0.619 | 9.2e-135 | |
| TAIR|locus:2046238 | 577 | AT2G28120 [Arabidopsis thalian | 0.404 | 0.395 | 0.437 | 3.1e-83 | |
| TAIR|locus:2059829 | 546 | AT2G16660 [Arabidopsis thalian | 0.410 | 0.423 | 0.380 | 1.3e-82 | |
| TAIR|locus:2056103 | 601 | AT2G39210 "AT2G39210" [Arabido | 0.412 | 0.386 | 0.423 | 5.2e-79 | |
| TAIR|locus:2116855 | 567 | AT4G34950 [Arabidopsis thalian | 0.387 | 0.384 | 0.35 | 2e-77 | |
| TAIR|locus:2040809 | 525 | AT2G34350 [Arabidopsis thalian | 0.404 | 0.434 | 0.345 | 5.9e-76 | |
| TAIR|locus:2198938 | 561 | AT1G80530 "AT1G80530" [Arabido | 0.390 | 0.392 | 0.363 | 1.2e-75 |
| TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1989 (705.2 bits), Expect = 1.3e-205, P = 1.3e-205
Identities = 382/506 (75%), Positives = 421/506 (83%)
Query: 5 QERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD 64
+ER SF NNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQ++RLGVAKDLGD
Sbjct: 6 RERVKSFINNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQLSRLGVAKDLGD 65
Query: 65 SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGE 124
SVGFLAG+L E+LP+W ALLVG++QN +GYGWVWLIVTGRAP+LPLWAMCILIFVGNNGE
Sbjct: 66 SVGFLAGTLSEILPLWAALLVGSVQNLVGYGWVWLIVTGRAPILPLWAMCILIFVGNNGE 125
Query: 125 TYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGP 184
TYFNTAALVS VQNFPKSRGPVVGILKGFAGLGGAIL+QVYTMIH+ D A+LIFMVAV P
Sbjct: 126 TYFNTAALVSGVQNFPKSRGPVVGILKGFAGLGGAILSQVYTMIHSSDRASLIFMVAVAP 185
Query: 185 AMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHXXXX 244
++VV+ LMF IRPVGGHRQ+R SD++SFT IY+VC+LLAAYLM VMLVED +DL+H
Sbjct: 186 SVVVVPLMFFIRPVGGHRQIRSSDATSFTVIYAVCILLAAYLMAVMLVEDFIDLSHSIII 245
Query: 245 XXXXXXXXXXXXXXXXXXXXXXXXERTDPA---EEALLSKPENMEPGKSN--QETDEVIL 299
TDP EE LL + +PG+S E+I
Sbjct: 246 AFTVVLFAILLVPIFIPIATSCFTASTDPCDTLEEPLLGDQQGQDPGQSTTPDHGPELIF 305
Query: 300 SEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALI 359
SEVEDEKPK+VDLLPA ER KRIAQLQA+L AAAEGAVRVKRRRGPHRGEDFTLTQAL+
Sbjct: 306 SEVEDEKPKEVDLLPAVERHKRIAQLQAKLMQAAAEGAVRVKRRRGPHRGEDFTLTQALV 365
Query: 360 KADFWLIFFXXXXXXXXXXTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSE 419
KADFWLIFF TVIDNLGQMSQSLGYDNTH+FVSMISIWNFLGR+GGGYFSE
Sbjct: 366 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWNFLGRIGGGYFSE 425
Query: 420 IIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASE 479
+IVRDYAYPRPVA+AVAQ VM++GHIF GWPGAM++GTLLIGLGYGAHWAIVPA ASE
Sbjct: 426 LIVRDYAYPRPVAIAVAQLVMSVGHIFFAYGWPGAMHIGTLLIGLGYGAHWAIVPATASE 485
Query: 480 LFGLKKFGALYNFLTLANPAGSIFTS 505
LFGLKKFGALYNFLTLANPAGS+ S
Sbjct: 486 LFGLKKFGALYNFLTLANPAGSLVFS 511
|
|
| TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1983 (703.1 bits), Expect = 5.4e-205, P = 5.4e-205
Identities = 378/506 (74%), Positives = 424/506 (83%)
Query: 5 QERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD 64
+E+FVSF NNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQK+++RLGVAKDLGD
Sbjct: 6 REKFVSFINNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKELSRLGVAKDLGD 65
Query: 65 SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGE 124
SVGF+AG+L E+LP+W ALLVGA+QN IGYGWVWLIVTGRAP+LPLWAMC+LIFVGNNGE
Sbjct: 66 SVGFIAGTLSEILPLWAALLVGAVQNLIGYGWVWLIVTGRAPILPLWAMCVLIFVGNNGE 125
Query: 125 TYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGP 184
TYFNT ALVS VQNFPKSRGPVVGILKGFAGLGGAI++Q+YTMIH+ + A+LI MVAV P
Sbjct: 126 TYFNTGALVSGVQNFPKSRGPVVGILKGFAGLGGAIISQIYTMIHSSNPASLILMVAVTP 185
Query: 185 AMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHXXXX 244
A+VV+ LMF IRPVGGH+Q+RP+D +SFTFIY VCLLLAAYLM VML++DLV ++H
Sbjct: 186 AVVVVCLMFFIRPVGGHKQIRPTDGASFTFIYGVCLLLAAYLMSVMLIQDLVVVSHNVIT 245
Query: 245 XXXXXXXXXXXXXXXXXXXXXXXXERTDP---AEEALLSKPENMEPGKSNQETDEVILSE 301
E +P EE L+ K E+ EPG +T ++ILSE
Sbjct: 246 VFTIVLFVILVVPILVPIMTSFFTETNEPDDTIEEPLVPKREDQEPGL---QTPDLILSE 302
Query: 302 VEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKA 361
VEDEKPKDVDLLPASER KRIA LQA+L AAAEGAVRV RRRGPHRGEDFTLTQAL+KA
Sbjct: 303 VEDEKPKDVDLLPASERHKRIAHLQAQLMQAAAEGAVRVNRRRGPHRGEDFTLTQALVKA 362
Query: 362 DFWLIFFXXXXXXXXXXTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEII 421
DFWLIFF TVIDNLGQMSQSLGYDNTH+ VSMISIWNFLGR+GGGYFSE++
Sbjct: 363 DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVLVSMISIWNFLGRIGGGYFSELV 422
Query: 422 VRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELF 481
VRDYAYPRPVAMAVAQ +M++GHIF GWPGAMY+GTLLIGLGYGAHWAIVPA ASELF
Sbjct: 423 VRDYAYPRPVAMAVAQLIMSVGHIFFAYGWPGAMYIGTLLIGLGYGAHWAIVPATASELF 482
Query: 482 GLKKFGALYNFLTLANPAGS-IFTSM 506
GLKKFGALYNFLTLANPAGS +F+ M
Sbjct: 483 GLKKFGALYNFLTLANPAGSLVFSGM 508
|
|
| TAIR|locus:2159752 AT5G50520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 742 (266.3 bits), Expect = 9.2e-135, Sum P(3) = 9.2e-135
Identities = 143/231 (61%), Positives = 182/231 (78%)
Query: 13 NNRWLVFVAAMWIQSCAGIGYLFG-SISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAG 71
N+RWLVFV AMW+QS AG+GYLFG S+SP IK+SL YNQKQIA LGVAK+LGD++GF++G
Sbjct: 14 NDRWLVFVCAMWVQSVAGVGYLFGGSMSPAIKTSLGYNQKQIALLGVAKNLGDAIGFVSG 73
Query: 72 SLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAA 131
+L EV P W LLVGA QN GYG VWL+VTG+ P LPLW + + IFVG NGETY+NTA+
Sbjct: 74 ALSEVSPSWVVLLVGATQNLFGYGVVWLVVTGQLPNLPLWMLFVAIFVGTNGETYYNTAS 133
Query: 132 LVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDH-ANLIFMVAVGPAMVVIA 190
LVSC+ NFP+SRGPVVGILKGF+GL GAILTQVY M + P H +++I MVA+GP +VV+A
Sbjct: 134 LVSCIHNFPESRGPVVGILKGFSGLSGAILTQVYLMFN-PSHDSSVILMVALGPPVVVLA 192
Query: 191 LMFIIRPVGGHRQVRP---SDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDL 238
L+FI+RPV R R SD F IY C++LA YL+G+++++ + D+
Sbjct: 193 LLFIVRPV--ERSCRTNLRSDDLRFLAIYGFCVVLAVYLLGLLVLQSVFDM 241
|
|
| TAIR|locus:2832385 AT5G50630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 742 (266.3 bits), Expect = 9.2e-135, Sum P(3) = 9.2e-135
Identities = 143/231 (61%), Positives = 182/231 (78%)
Query: 13 NNRWLVFVAAMWIQSCAGIGYLFG-SISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAG 71
N+RWLVFV AMW+QS AG+GYLFG S+SP IK+SL YNQKQIA LGVAK+LGD++GF++G
Sbjct: 14 NDRWLVFVCAMWVQSVAGVGYLFGGSMSPAIKTSLGYNQKQIALLGVAKNLGDAIGFVSG 73
Query: 72 SLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAA 131
+L EV P W LLVGA QN GYG VWL+VTG+ P LPLW + + IFVG NGETY+NTA+
Sbjct: 74 ALSEVSPSWVVLLVGATQNLFGYGVVWLVVTGQLPNLPLWMLFVAIFVGTNGETYYNTAS 133
Query: 132 LVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDH-ANLIFMVAVGPAMVVIA 190
LVSC+ NFP+SRGPVVGILKGF+GL GAILTQVY M + P H +++I MVA+GP +VV+A
Sbjct: 134 LVSCIHNFPESRGPVVGILKGFSGLSGAILTQVYLMFN-PSHDSSVILMVALGPPVVVLA 192
Query: 191 LMFIIRPVGGHRQVRP---SDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDL 238
L+FI+RPV R R SD F IY C++LA YL+G+++++ + D+
Sbjct: 193 LLFIVRPV--ERSCRTNLRSDDLRFLAIYGFCVVLAVYLLGLLVLQSVFDM 241
|
|
| TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 500 (181.1 bits), Expect = 3.1e-83, Sum P(2) = 3.1e-83
Identities = 101/231 (43%), Positives = 145/231 (62%)
Query: 7 RF-VSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS 65
RF + FFN RW + A+ I +CAG YLFG+ S IKS+L Y+Q + LG KDLG +
Sbjct: 8 RFLIHFFNGRWFMVFASFLIMACAGATYLFGTYSKDIKSTLGYDQTTLNLLGFFKDLGAN 67
Query: 66 VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGET 125
VG L+G + EV P W L +G+ NF+GY +WL VTG+ +W MC+ I +G N +
Sbjct: 68 VGVLSGLIAEVTPTWFVLTIGSAMNFVGYFMIWLTVTGKVAKPKVWQMCLYICIGANSQN 127
Query: 126 YFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPA 185
+ NT ALV+CV+NFP+SRG ++G+LKG+ GL GAI TQ+Y I+ D +LI ++A PA
Sbjct: 128 FANTGALVTCVKNFPESRGVMLGLLKGYVGLSGAIFTQLYFAIYGHDSKSLILLIAWLPA 187
Query: 186 MVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLV 236
V + +++IR RQ R S + F+Y + + LA +LM + + E V
Sbjct: 188 AVSLVFVYLIREKKVVRQ-RNELSVFYQFLY-ISIFLALFLMAMNIAEKQV 236
|
|
| TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 432 (157.1 bits), Expect = 1.3e-82, Sum P(2) = 1.3e-82
Identities = 89/234 (38%), Positives = 133/234 (56%)
Query: 1 MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAK 60
MG FQ S +WL FV A+W+QS +G Y F + S +KS +N NQ ++ L VAK
Sbjct: 1 MG-FQRSISSSSALKWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLNQLELNNLSVAK 59
Query: 61 DLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVG 120
D+G + G LAG + LP LL+G + +GYG WL+V+ +P W MCI + +G
Sbjct: 60 DVGKAFGILAGLASDRLPTPVILLIGCFEGLLGYGVQWLVVSRTIQPIPYWQMCIFLCMG 119
Query: 121 NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMV 180
N T+ NTA LV+C++NF ++RGPV GILKG+ GL AI T + T + + D A+ + ++
Sbjct: 120 GNSTTWMNTAVLVTCIRNFRRNRGPVSGILKGYVGLSTAIFTDLCTALFSNDPASFLVLL 179
Query: 181 AVGPAMVVIALMFIIR--PVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 232
AV P V + +F +R P ++ FT V +++A YL ++
Sbjct: 180 AVVPFAVCLTAVFFLREIPPASSAAEENEETRYFTIFNIVAVVVAVYLQSYDII 233
|
|
| TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 461 (167.3 bits), Expect = 5.2e-79, Sum P(2) = 5.2e-79
Identities = 99/234 (42%), Positives = 137/234 (58%)
Query: 2 GKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKD 61
G + + RW +F ++ I S AG Y+FG S IK +L Y+Q + L KD
Sbjct: 8 GSMKSLTIQILTGRWFMFFGSLLIMSTAGATYMFGIYSGDIKETLGYDQTTLNLLSFFKD 67
Query: 62 LGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGN 121
LG +VG LAG L EV P W LL+GA+ NF GY +WL VT R +W MC+ I VG
Sbjct: 68 LGANVGVLAGLLNEVTPPWFILLIGAILNFFGYFMIWLAVTERISKPQVWHMCLYICVGA 127
Query: 122 NGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVA 181
N +++ NT +LV+CV+NFP+SRG V+GILKG+ GL GAI+TQ+Y + D LI M+
Sbjct: 128 NSQSFANTGSLVTCVKNFPESRGVVLGILKGYVGLSGAIITQLYRAFYGEDTKELILMIG 187
Query: 182 VGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDL 235
PA+V A + IR + RQ + F+Y + L LA +LM V+++ L
Sbjct: 188 WLPAIVSFAFLRTIRIMKVKRQTNEL-KVFYNFLY-ISLGLATFLMVVIIINKL 239
|
|
| TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 400 (145.9 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
Identities = 77/220 (35%), Positives = 129/220 (58%)
Query: 15 RWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLC 74
+WL FV A+W+QS +G Y F + S +KS +N Q ++ L VAKD+G + G LAG
Sbjct: 16 KWLGFVTAVWVQSISGNNYTFSNYSGALKSLMNLTQLELNSLSVAKDVGKAFGILAGLAS 75
Query: 75 EVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVS 134
+ L LL+G+ + +GYG WL+V+ +P W MC+ + +G N T+ NTA LV+
Sbjct: 76 DRLSTPVILLIGSFEGLLGYGVQWLVVSRTIQPIPYWQMCVFLCMGGNSTTWMNTAVLVT 135
Query: 135 CVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFI 194
C++NF ++RGPV GILKG+ GL AI T + + + D A+ + +++V P V + +F
Sbjct: 136 CIRNFRRNRGPVSGILKGYVGLSTAIFTDLCNALFSSDPASFLVLLSVVPFAVCLTAVFF 195
Query: 195 IRPVGGHRQ-VRPSDSSSFTFIYS-VCLLLAAYLMGVMLV 232
+R + ++ S + +++ V +++A YL ++
Sbjct: 196 LREIPPSTTFAEDNEESKYFAVFNIVAVVVAVYLQSYDII 235
|
|
| TAIR|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 399 (145.5 bits), Expect = 5.9e-76, Sum P(2) = 5.9e-76
Identities = 84/243 (34%), Positives = 138/243 (56%)
Query: 9 VSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGF 68
+ F N +W+ A++WIQS +G Y FG S V+KSS +Y+Q + + V KD+G +VG
Sbjct: 1 MEFANTKWVAAAASIWIQSFSGASYTFGIYSSVLKSSQSYDQSTLDTVSVYKDIGANVGI 60
Query: 69 LAGSLCEVLPI------------WGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCIL 116
L+G + W + VG LQ F+GYG++W+ +G P P+ MC+
Sbjct: 61 LSGLFYTAVASRKSGNGGFFSGPWLVIFVGLLQWFVGYGFIWMATSGVIPRPPVAMMCLF 120
Query: 117 IFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANL 176
+F + + +FNTA +V+ V+NF G VGI+KG+ GL GAIL Q+Y + D N
Sbjct: 121 MFFAGHCQPFFNTAIVVTAVRNFSDYGGTAVGIMKGYLGLSGAILVQMYHIFCGGDPRNY 180
Query: 177 IFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLV 236
I ++AV P+++++ LM +R + V D + ++ L++ YLM V+LVE+++
Sbjct: 181 ILLLAVVPSLLILTLMPFVRT---YDTVIAGDKKHLNGLSAISLIIVTYLMVVILVENII 237
Query: 237 DLN 239
++
Sbjct: 238 GMS 240
|
|
| TAIR|locus:2198938 AT1G80530 "AT1G80530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 404 (147.3 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 80/220 (36%), Positives = 128/220 (58%)
Query: 16 WLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCE 75
W+ AA W+Q AG G F S +KS L ++Q+Q+ LGVA DLG+++G L G
Sbjct: 14 WVGLAAAAWVQVSAGSGSTFPLYSSALKSVLGFSQQQVTILGVACDLGENMGLLPGYASN 73
Query: 76 VLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSC 135
LP W LL+GA F+G+G +WL V+ LP W + + + + N ++F TA+LV+
Sbjct: 74 KLPPWSMLLIGASSCFLGFGVLWLSVSQIVLGLPFWLLFVALALATNSNSWFGTASLVTN 133
Query: 136 VQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFII 195
++NFP SRGPV G+LKG+ G+ GA T +++M+ +L+ + VG ++ + +M+ I
Sbjct: 134 MRNFPMSRGPVAGLLKGYIGISGAAFTVLFSMVLHHSAMDLLLFLTVGIPVICLTVMYFI 193
Query: 196 RPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDL 235
RP PS+ F F+ +L AAYL+ ++ ++
Sbjct: 194 RPCIPATGEDPSEPMYFAFLLVTSILFAAYLVVTTVLSEV 233
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 563 | |||
| pfam06813 | 248 | pfam06813, Nodulin-like, Nodulin-like | 1e-107 | |
| TIGR00890 | 377 | TIGR00890, 2A0111, oxalate/formate antiporter fami | 5e-11 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-04 | |
| PTZ00207 | 591 | PTZ00207, PTZ00207, hypothetical protein; Provisio | 0.002 |
| >gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like | Back alignment and domain information |
|---|
Score = 321 bits (824), Expect = e-107
Identities = 111/248 (44%), Positives = 155/248 (62%)
Query: 15 RWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLC 74
RWL VAA+WIQS AG Y F S +KSSL Y+Q Q+ LGVAKDLG + G+L+G
Sbjct: 1 RWLGLVAAIWIQSFAGANYDFSLYSSALKSSLGYSQVQLNLLGVAKDLGKNFGWLSGLAA 60
Query: 75 EVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVS 134
E LP W LLVGA F+GYG WL VTG+ P LP W +C+ I + N +FNTA+LV+
Sbjct: 61 EYLPPWVVLLVGAAMGFVGYGVQWLAVTGKIPGLPYWLLCLAICLAGNSICWFNTASLVT 120
Query: 135 CVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFI 194
C++NFP+SRG V+GILKG+AGL AI TQ+YT I D ++L+ + A+ P +V + ++
Sbjct: 121 CIRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGNDASSLLLLNALVPLVVSLVALYF 180
Query: 195 IRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLL 254
IRP G + S+S F + + LA YL+ + ++ DL+ I+ +LL
Sbjct: 181 IRPCPGKVGEQRSESVVFLVFNVLSVALAVYLVAMSILSKSFDLSSAEYYALGAIMVLLL 240
Query: 255 FIPIVIPI 262
+P+ +PI
Sbjct: 241 LVPLAVPI 248
|
This family represents a conserved region within plant nodulin-like proteins. Length = 248 |
| >gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 5e-11
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 11/163 (6%)
Query: 348 RGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISI 405
+D+T+ + L FW+++ S L + SGL +I QSLG + + VS+ SI
Sbjct: 192 SVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSI 251
Query: 406 WNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIG--HIFLGMGWPGAMYVGTL-LI 462
+N GR G S+ I R M++ + A+G + +++ T+ L+
Sbjct: 252 FNGGGRPFLGALSDKI------GRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV 305
Query: 463 GLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTS 505
+G ++ P+ S++FG A Y FL A IF
Sbjct: 306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGG 348
|
This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 10/182 (5%)
Query: 363 FWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIV 422
L FF L G LT + Q L + +S+ + LG + GG S+ +
Sbjct: 180 LALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLG 239
Query: 423 RDYAYPRPVAMAVAQFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASELF 481
R R + + + + A+G + L + + V LL+G G G + + ASEL
Sbjct: 240 R-----RRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELA 294
Query: 482 GLKKFGALYNFLTLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 541
+ G G + + Y +I++ L ++A +L ++
Sbjct: 295 PPEARGTASGLFNTFGSLGGALGPLL----AGLLLDTGGYGGVFLILAALALLAALLLLL 350
Query: 542 LV 543
L
Sbjct: 351 LP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|140234 PTZ00207, PTZ00207, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 123 GETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQV 164
G F+ A+V+ + FP +RG VV I+K F GLG AIL +
Sbjct: 133 GCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSI 174
|
Length = 591 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 563 | |||
| PTZ00207 | 591 | hypothetical protein; Provisional | 100.0 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.93 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.91 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.86 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.86 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.84 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.84 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.84 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.83 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.81 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.81 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.79 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.78 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.77 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.76 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.75 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.74 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.73 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.73 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.72 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.72 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.71 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.71 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.69 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.69 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.68 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.67 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.66 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.66 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.65 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.65 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.64 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.64 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.63 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.63 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.62 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.62 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.61 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.61 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.6 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.6 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.59 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.59 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.58 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.58 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.58 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.58 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.56 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.55 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.55 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.55 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.54 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.54 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.54 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.54 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.53 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.53 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.51 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.51 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.5 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.49 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.49 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.48 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.45 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.45 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.4 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.38 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.37 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.36 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.36 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.35 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.34 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.32 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.25 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.24 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.22 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.21 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.19 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.15 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.08 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.08 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.02 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.99 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.98 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.98 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.89 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.87 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.85 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.83 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.81 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.76 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 98.74 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.7 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.67 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.56 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.54 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.52 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.5 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.48 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.46 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.46 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.45 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.44 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.43 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.41 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.37 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.36 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.35 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.34 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.34 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.33 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.31 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.3 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.29 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.28 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.25 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.25 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.24 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 98.22 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.2 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.19 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.19 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 98.18 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.16 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.16 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.16 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.15 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.13 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.13 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.12 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.11 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.1 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 98.1 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.08 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 98.07 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.07 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.05 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.05 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.05 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.04 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.03 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.03 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.03 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.02 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.01 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.0 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 98.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 97.98 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 97.96 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 97.95 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 97.95 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 97.95 | |
| PRK12382 | 392 | putative transporter; Provisional | 97.93 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 97.92 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 97.92 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.91 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 97.89 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 97.89 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 97.88 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 97.87 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 97.84 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 97.84 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 97.84 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 97.82 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 97.81 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.8 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 97.79 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 97.79 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 97.78 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 97.77 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.76 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 97.75 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.74 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 97.74 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 97.74 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.7 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 97.69 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 97.68 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 97.67 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 97.64 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 97.63 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 97.61 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 97.61 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 97.6 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 97.53 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 97.52 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 97.5 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.47 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 97.38 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.37 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.36 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 97.36 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 97.22 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 97.16 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.03 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.03 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.03 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 96.89 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 96.8 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 96.71 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 96.64 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.59 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 96.56 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 96.53 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 96.5 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.45 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 96.33 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 95.98 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 95.97 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 95.96 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 95.94 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 95.93 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 95.89 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 95.84 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 95.63 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 95.55 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 95.55 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 95.52 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 95.52 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 95.5 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 95.37 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 95.12 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 94.87 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 94.84 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 94.74 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 94.09 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 94.03 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 93.95 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 93.82 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 92.71 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 91.91 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 91.65 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 91.57 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 91.46 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 91.01 | |
| PRK11462 | 460 | putative transporter; Provisional | 90.14 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 89.53 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 88.86 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 88.61 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 88.53 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 88.32 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 87.45 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 85.03 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 84.17 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 83.24 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 82.77 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 81.46 |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-75 Score=644.44 Aligned_cols=497 Identities=18% Similarity=0.273 Sum_probs=415.4
Q ss_pred ccchHHHHHHHHHHHHhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhhhhhhcchhhhccchhHHHHHHHHHHHH
Q 008514 12 FNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNF 91 (563)
Q Consensus 12 ~~~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~gi~~G~l~D~~gp~~~~~iG~~~~~ 91 (563)
..+||++++++++++.++|+.|.|++|+++|++++|+||+|+++++..+...+.+++++|.++||+|||.++++|+++.+
T Consensus 23 e~~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~ 102 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC 102 (591)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999865544445667799999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCCCCCcchhhhHhhhhhhHHHHHHHHHHhcCC
Q 008514 92 IGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAP 171 (563)
Q Consensus 92 ~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~ 171 (563)
+||.+.|+++++.+. +++|+++++.++.|+|++++++++++++++|||++||+++|+.+++.|+|++++++++.+++.+
T Consensus 103 iG~ll~ala~~~~i~-~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~ 181 (591)
T PTZ00207 103 LGTLLFALTFQEVIE-GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSD 181 (591)
T ss_pred HHHHHHHHHhccccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888774 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhheeecccCCCCC---C---CCCCCC-----------------chhHHHHHHHHHHHHHHH
Q 008514 172 DHANLIFMVAVGPAMVVIALMFIIRPVGGHRQ---V---RPSDSS-----------------SFTFIYSVCLLLAAYLMG 228 (563)
Q Consensus 172 ~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~---~---~~~~~~-----------------~f~~~~~~~~~l~~~l~~ 228 (563)
+.+.+++++++.+.+++++...++|.+|++.. + +++|+. +|..++.+++.+++|+++
T Consensus 182 ~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~ 261 (591)
T PTZ00207 182 NTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPL 261 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999998875532 1 222332 788999999999999999
Q ss_pred HHHhhccccCChhHHHHHHHHHH-HHhhcc-cccchhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCC
Q 008514 229 VMLVEDLVDLNHTVIIIFTVILF-VLLFIP-IVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEK 306 (563)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~i~~-~ll~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (563)
+++++++.+++++.+..++++++ ++++.| +++|++. ....++ ++ ++ +.+ + .+.+ +++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~--~~~~~~-~~-----~~-~~~-~---~~~~--------~~~ 320 (591)
T PTZ00207 262 QGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTT--FDGKRP-HD-----DS-DGK-A---KEHV--------EAG 320 (591)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHH--hccCCc-CC-----Cc-ccc-c---cccc--------ccc
Confidence 99999999999998888888776 778888 8888753 211100 00 00 000 0 0000 000
Q ss_pred CCccCCCchhhHHHHHHHHHHHHHhhhhhhh-hhhhcc-CCCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeech
Q 008514 307 PKDVDLLPASERRKRIAQLQARLFHAAAEGA-VRVKRR-RGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNL 384 (563)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~ 384 (563)
.+.. +.+++ .+.+.+ ..|++++ |++|++++.|||++|+.++|+.|+|++++||+
T Consensus 321 ~~~~----------------------~~~~~~~~~~~~~~~P~~~~--t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~ 376 (591)
T PTZ00207 321 EEVS----------------------AAEDKVVETDVDYIAPQFQE--TFIEGLKTARLWCLLWSIFCCVGAHFVIIFNA 376 (591)
T ss_pred cccc----------------------ccccccccccccCCCCCCcc--hHHHHHhchhHHHHHHHHHHhhCchheeeecH
Confidence 0000 00000 001111 3377665 99999999999999999999999999999999
Q ss_pred HHHHHHh-CC-Cch--hH-HHHHHHHHHhhhhhhhhhhhhhhhhhcC----CchhHHHHHHHHHHHHHHHHHhhcCc-hh
Q 008514 385 GQMSQSL-GY-DNT--HI-FVSMISIWNFLGRVGGGYFSEIIVRDYA----YPRPVAMAVAQFVMAIGHIFLGMGWP-GA 454 (563)
Q Consensus 385 ~~i~~~~-g~-~~~--~~-~Vsl~si~n~~GRl~~G~lsD~~~~~~~----~~r~~~l~~~~~~~~~~~lll~~~~~-~~ 454 (563)
+||.+++ |+ .++ .+ +|+++|++|++||+++|++| .+.++++ +||+.++++.++ +.+++++++...| ..
T Consensus 377 ~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~ 454 (591)
T PTZ00207 377 RFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAA 454 (591)
T ss_pred HHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccH
Confidence 9999999 77 333 33 89999999999999999999 5555554 999999999988 8888888777666 78
Q ss_pred HHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhcc-------CCC---CCCCCccccCcccHHH
Q 008514 455 MYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTS-------MPR---VDEPLKCEGSICYFLT 524 (563)
Q Consensus 455 l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~-------~~~---~~~~~~C~G~~cy~~~ 524 (563)
||++++++|+|||+.|++.|.+++|+|| ||||+|||+++++.++|++++| +++ ++++..|.|.+||+.+
T Consensus 455 L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~ 533 (591)
T PTZ00207 455 LPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMP 533 (591)
T ss_pred hHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhH
Confidence 9999999999999999999999999999 9999999999999999999998 222 3556799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhcc
Q 008514 525 SMIMSGLCIVAVILSMILVHRTTNVYSH-LYGKS 557 (563)
Q Consensus 525 f~i~~~~~~~~~~l~l~l~~R~r~~~~~-~~~~~ 557 (563)
|++++++|++|+++++++|+||||||++ +.+++
T Consensus 534 ~~v~~~~~~~g~~~s~~l~~R~r~~y~~~~~~~~ 567 (591)
T PTZ00207 534 LAFLLGLSFLAFITSTYVHLQYRRLCLKALEERR 567 (591)
T ss_pred HHHHHHHHHHHHHHHhheeeehHHHHHHHHHHHH
Confidence 9999999999999999999999999974 44433
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-57 Score=452.75 Aligned_cols=248 Identities=46% Similarity=0.937 Sum_probs=239.8
Q ss_pred hHHHHHHHHHHHHhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhhhhhhcchhhhccchhHHHHHHHHHHHHHHH
Q 008514 15 RWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGY 94 (563)
Q Consensus 15 Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy 94 (563)
||+++++++|+|+++|++|.||+||||||+++|+||+|+|++++++|+|.++|+++|+++|++|||.++++|++++++||
T Consensus 1 rW~~l~a~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G~~~G~l~d~~gp~~~l~iG~~~~~~GY 80 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFGILAGLLYDRFGPWVVLLIGAVLGFVGY 80 (250)
T ss_pred ChhhHHHHHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhccHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCCCCCcchhhhHhhhhhhHHHHHHHHHHhcCCChh
Q 008514 95 GWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHA 174 (563)
Q Consensus 95 ~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~ 174 (563)
+++|++++++++.+++|++|++.+++|+|++|+||++++||+||||++||+|+|++|+++||||+||+++|+++|++|++
T Consensus 81 ~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~ 160 (250)
T PF06813_consen 81 GLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPS 160 (250)
T ss_pred HHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChH
Confidence 99999999999877999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhheeecccCC--CCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHH
Q 008514 175 NLIFMVAVGPAMVVIALMFIIRPVGG--HRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFV 252 (563)
Q Consensus 175 ~fll~la~~~~~v~l~~~~~vr~~~~--~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 252 (563)
.|++|++++|.++++++++++|++|+ +++++++|+++|...+.+++.+++|+++.++++++.+++++.+...+.++++
T Consensus 161 ~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~~~F~~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~~~~il~l 240 (250)
T PF06813_consen 161 SFLLFLAVLPAVVCLVAMFFVRPVPPSPSRTRQPSESKRFLFFFAIALALAIYLLVISILQNFVKLSRAARVIFAVILLL 240 (250)
T ss_pred HHHHHHHHHHHHHHHHHhhheeccCCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999986 3456677888999999999999999999999999999999998899999999
Q ss_pred Hhhcccccch
Q 008514 253 LLFIPIVIPI 262 (563)
Q Consensus 253 ll~~~~~i~~ 262 (563)
+++.|++||+
T Consensus 241 lL~~Pl~i~~ 250 (250)
T PF06813_consen 241 LLLLPLAIPV 250 (250)
T ss_pred HHHhhhhccC
Confidence 9999999884
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=225.61 Aligned_cols=365 Identities=22% Similarity=0.303 Sum_probs=251.3
Q ss_pred chHHHHHHHHHHHHhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHH
Q 008514 14 NRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFI 92 (563)
Q Consensus 14 ~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~ 92 (563)
+||..+++.+..+.+.|..|+|+.+.|++++++|+|.+|++.+.....++..+ .++.|.+.||+|+|.++.++.++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~ 80 (377)
T TIGR00890 1 RWWYVLVGTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGL 80 (377)
T ss_pred CeEEEeHHHHHHHHHhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHH
Confidence 57889999999999999999999999999999999999999987777777755 78899999999999999999998888
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCCCCCcchhhhHhhhhhhHHHHHHHHHHhcCCC
Q 008514 93 GYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 172 (563)
Q Consensus 93 Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~ 172 (563)
|+.+.... +++|.+...-++.|.|.+..+.++.....+|||++||++.|+...+.++++.+..++...+.+..
T Consensus 81 ~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 153 (377)
T TIGR00890 81 GFTFYAIA-------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLE 153 (377)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHHHHHHHhcc
Confidence 87654322 25677766556778888888888888999999999999999999999999877665554221100
Q ss_pred hhHHHHHHHHHHHHHHHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHH
Q 008514 173 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFV 252 (563)
Q Consensus 173 ~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 252 (563)
..+..+ +..+ ....+.++
T Consensus 154 --------------------------------------~~~~~f--------~~~~----------------~~~~~~~~ 171 (377)
T TIGR00890 154 --------------------------------------GVPAAF--------IYMG----------------IIFLLVIV 171 (377)
T ss_pred --------------------------------------cHHHHH--------HHHH----------------HHHHHHHH
Confidence 000000 0000 00011110
Q ss_pred HhhcccccchhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhh
Q 008514 253 LLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHA 332 (563)
Q Consensus 253 ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (563)
+... +.++++ +++.+ ++++ .
T Consensus 172 ~~~~---------~~~~~~------------~~~~~--------------~~~~---~---------------------- 191 (377)
T TIGR00890 172 LGAF---------LIGYPP------------GQLIK--------------TNIE---V---------------------- 191 (377)
T ss_pred HHHH---------heecCc------------hhccc--------------cCcc---c----------------------
Confidence 0000 011100 00000 0000 0
Q ss_pred hhhhhhhhhccCCCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchh--HHHHHHHHHHhhh
Q 008514 333 AAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLG 410 (563)
Q Consensus 333 ~~~~~~~~~~~~~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~--~~Vsl~si~n~~G 410 (563)
+ .++.+.++.+|++++|++...+++.......+.+...++.+++|.++.. ...++.++.+.+|
T Consensus 192 -------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (377)
T TIGR00890 192 -------------S--VKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGG 256 (377)
T ss_pred -------------c--hhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 0 0112346788999999999888887776666667777788888877653 3778899999999
Q ss_pred hhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhcC--ch-hHHHHHHHHHhhhhhhcchhHHHHHHhhccCcch
Q 008514 411 RVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW--PG-AMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFG 487 (563)
Q Consensus 411 Rl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~--~~-~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg 487 (563)
|+.+|+++||++||+. +.+...+..++.+++.... .. .++....+.|+++|..+.+.|.+++|.++.++.|
T Consensus 257 ~~~~g~l~dr~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~ 330 (377)
T TIGR00890 257 RPFLGALSDKIGRQKT------MSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSA 330 (377)
T ss_pred HHHHHHHHHHHhhhhh------hhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhh
Confidence 9999999999987432 2233344444443333222 22 2334567789999999999999999999999999
Q ss_pred hhhhhhhh----chhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHH
Q 008514 488 ALYNFLTL----ANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAV 536 (563)
Q Consensus 488 ~nyg~~~~----a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~ 536 (563)
+.+|+... +..+||.+.+...+ ...|+..|.+.++++++++
T Consensus 331 ~~~g~~~~~~~~g~~~~~~~~g~l~~--------~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 331 ANYGFLYTAKAVAGIFGGLIASHALT--------EIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHh--------hhchhhHHHHHHHHHHHhc
Confidence 99998764 45555555443220 1238999988887777654
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=230.67 Aligned_cols=423 Identities=19% Similarity=0.249 Sum_probs=287.1
Q ss_pred hHHHHHHHHHH-HHhcCcccccccccHHHHhhhCCChhhHHHH-HHHHhhhhhhhhcchhhhccchhHHHHHHHHHHHHH
Q 008514 15 RWLVFVAAMWI-QSCAGIGYLFGSISPVIKSSLNYNQKQIARL-GVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFI 92 (563)
Q Consensus 15 Rw~~l~a~~~i-~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i-~~a~~vG~~~gi~~G~l~D~~gp~~~~~iG~~~~~~ 92 (563)
-|.+.+++.++ ..+-|..|.|+++-+.+++.++-+.+|.++| ++...+....|++.+.++||+|.|.+.++|+++.+.
T Consensus 44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHH
Confidence 48888888666 5677999999999999999999999998886 555555556699999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHH-HHHHHhccCcchhhhhHHHHHHHhcCCCCCcchhhhHhhhhhhHHHHHHHHHHhcC-
Q 008514 93 GYGWVWLIVTGRAPVLPLWAMC-ILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHA- 170 (563)
Q Consensus 93 Gy~~~~l~~~g~i~~~s~~~l~-~~~~l~g~g~~~~~ta~l~t~~k~FP~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~- 170 (563)
|+.+-..+ .++|+++ .|++++|.|.++.|..+++...++|++||++|+|+..++-|++..+|+.+....++
T Consensus 124 g~~lssF~-------~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~ 196 (509)
T KOG2504|consen 124 GLLLSSFA-------TSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSK 196 (509)
T ss_pred HHHHHHHH-------hhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHH
Confidence 98864322 2589886 59999999999999999999999999999999999999999999999999987663
Q ss_pred -CChhHHHHHHHHHHHHHHHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHH
Q 008514 171 -PDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVI 249 (563)
Q Consensus 171 -~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i 249 (563)
+....++.+.++. +-.+.+....||+..+..+. ++++. +.
T Consensus 197 ~G~r~~~l~~~~~~--l~~~~~~~~~rp~~~~~~~~-~~~~~---------------------------~~--------- 237 (509)
T KOG2504|consen 197 YGWRGALLIFGGIS--LNVLVAGALLRPLSPPKKPN-EEKDL---------------------------RN--------- 237 (509)
T ss_pred hCcHHHHHHHHHHH--HHHHHHHHHcCCCCcCCCch-hhhhh---------------------------cc---------
Confidence 3334444444332 33344444555543321111 00000 00
Q ss_pred HHHHhhcccccchhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCcc-CCCchhhHHHHHHHHHHH
Q 008514 250 LFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDV-DLLPASERRKRIAQLQAR 328 (563)
Q Consensus 250 ~~~ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 328 (563)
. .. ..+..+ .+.+.+. .+++ ....+.. ...+..++.
T Consensus 238 ------~-------~~-~~~~~~--------~~~~~~~----~~~~--------~~~~~~~~~~~~~~~~~--------- 274 (509)
T KOG2504|consen 238 ------S-------AA-SVESTP--------KPVELRI----SERD--------SGLKKLSLSNLATLKRG--------- 274 (509)
T ss_pred ------c-------cc-cccccc--------ccccccc----ccCC--------CCCCcccccchhhhhhC---------
Confidence 0 00 000000 0000000 0000 0000000 000000000
Q ss_pred HHhhhhhhhhhhhccCCCC-cCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchh--HHHHHHHH
Q 008514 329 LFHAAAEGAVRVKRRRGPH-RGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISI 405 (563)
Q Consensus 329 ~~~~~~~~~~~~~~~~~p~-~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~--~~Vsl~si 405 (563)
+ .+..+.+. ...+.--.+++|++.||.+.+...+....-..-..++...++++|++..+ ..+|++++
T Consensus 275 ----~------~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi 344 (509)
T KOG2504|consen 275 ----P------DKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGV 344 (509)
T ss_pred ----C------ccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHH
Confidence 0 00000011 00111135889999999999998888887777788899999999998764 48999999
Q ss_pred HHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhc-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccC
Q 008514 406 WNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLK 484 (563)
Q Consensus 406 ~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~-~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k 484 (563)
.|.+||++.|++.|+-. .++.+...+..+..+++.++.... ....+..-+++.|++.|...++.+.++.|+.|++
T Consensus 345 ~~i~gRi~~G~laD~~~----~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~ 420 (509)
T KOG2504|consen 345 SDIIGRIILGLLADKPG----IRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE 420 (509)
T ss_pred hhhhhhhhhhhhcCccc----cchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 99999999999999764 234444445555555555444433 3346888999999999999999999999999999
Q ss_pred cchhhhhhhhhchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008514 485 KFGALYNFLTLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 543 (563)
Q Consensus 485 ~fg~nyg~~~~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~ 543 (563)
++..-||++.+..+++.++.+-.. +.-.+.+ +.|..+|+......+++..+.+...
T Consensus 421 ~l~~a~Gl~l~~~gi~~l~gpPia-g~~~d~t--g~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 421 KLSNAYGLLLLFQGIGALVGPPIA-GLLYDIT--GNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred hcchHHHHHHHHhHHHHHcCcccc-eeeeecc--CCeeeehhhcChHHHHHHHHHHHhH
Confidence 999999998866666555544221 0001223 3499999999888888887777666
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.7e-20 Score=199.33 Aligned_cols=402 Identities=12% Similarity=0.108 Sum_probs=239.8
Q ss_pred cchHHHHHHHHHHHHh-cCcccccccccHHHHhhhCCChhhHHHHHHHHhhhh-hhhhcchhhhccchhHHHHHHHHHHH
Q 008514 13 NNRWLVFVAAMWIQSC-AGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLVGALQN 90 (563)
Q Consensus 13 ~~Rw~~l~a~~~i~l~-~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~-~~gi~~G~l~D~~gp~~~~~iG~~~~ 90 (563)
..||.+++++.+.+.. -+..+.++.+-+++++.+|+|+++...+.+...++. ..+++.|.+.||+|+|.+++++.++.
T Consensus 15 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 94 (455)
T TIGR00892 15 GWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLA 94 (455)
T ss_pred CcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHH
Confidence 3478877777766543 445577899999999999999999999755444444 45888999999999999999988877
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHH-HHHHhccCcchhhhhHHHHHHHhcCCCCCcchhhhHhhhhhhHHHHHHHHHHhc
Q 008514 91 FIGYGWVWLIVTGRAPVLPLWAMCI-LIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIH 169 (563)
Q Consensus 91 ~~Gy~~~~l~~~g~i~~~s~~~l~~-~~~l~g~g~~~~~ta~l~t~~k~FP~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f 169 (563)
.++..+.. +. .++|.+.. ..++.|.+.+.....+.....+|||++||++.|+...+.++++.+...+...+.
T Consensus 95 ~~~~~~~~--~~-----~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~ 167 (455)
T TIGR00892 95 SLGMILAS--FS-----SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLF 167 (455)
T ss_pred HHHHHHHH--Hh-----hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 66665432 21 13566543 345667777765566667778999999999999999999998877655442111
Q ss_pred CCChhHHHHHHHHHHHHHHHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHH
Q 008514 170 APDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVI 249 (563)
Q Consensus 170 ~~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i 249 (563)
+. . + ++..+ ++.+. ...+
T Consensus 168 ~~--------~------------------g------------wr~~f--------~~~~~----------------~~~~ 185 (455)
T TIGR00892 168 ES--------F------------------G------------WRGSF--------LILGG----------------LLLH 185 (455)
T ss_pred HH--------h------------------C------------hHHHH--------HHHHH----------------HHHH
Confidence 00 0 0 01100 00000 0000
Q ss_pred HHHHhhcccccchhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHH
Q 008514 250 LFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARL 329 (563)
Q Consensus 250 ~~~ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (563)
.++..+. +.+.+++++ . +++++++. .+ ++.+.++.. .++
T Consensus 186 ~~v~~~~---------~~~~~~~~~--~---~~~~~~~~-----~~-------~~~~~~~~~----~~~----------- 224 (455)
T TIGR00892 186 CCVCGAL---------MRPVGPSQR--V---SKSKSKEG-----LP-------PDGSTKKLS----KKS----------- 224 (455)
T ss_pred HHHHHHH---------hCCCCcccc--c---cccccccc-----CC-------CCCcccccc----ccc-----------
Confidence 0000000 000000000 0 00000000 00 000000000 000
Q ss_pred HhhhhhhhhhhhccCCCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchh--HHHHHHHHHH
Q 008514 330 FHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWN 407 (563)
Q Consensus 330 ~~~~~~~~~~~~~~~~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~--~~Vsl~si~n 407 (563)
. .+ + . .+.-..+.+++++||.+....++....-.+....+.++.++.|++... ...++.++.+
T Consensus 225 --------~-~~-~--~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~ 289 (455)
T TIGR00892 225 --------T-AE-K--I---NRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVD 289 (455)
T ss_pred --------h-hh-h--h---hhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 0 00 0 0 011113678999999888877766555555666778888888887654 3788899999
Q ss_pred hhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHh-hcCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcc
Q 008514 408 FLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKF 486 (563)
Q Consensus 408 ~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~-~~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~f 486 (563)
.++|++.|+++||...+. .|...+.....+..++.++.. ..+...+++..++.|+++|........++.|.++.++.
T Consensus 290 ~~~~~~~g~l~d~~~~~~--~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~ 367 (455)
T TIGR00892 290 IFARPSCGLIAGLKWIRP--HVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRF 367 (455)
T ss_pred HHHHHHHHHHhcccccCH--HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHH
Confidence 999999999999732111 111222222222223332322 23334566678888999999999999999999999999
Q ss_pred hhhhhhhhh----chhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHH----HHHHHHhhhhh
Q 008514 487 GALYNFLTL----ANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVI----LSMILVHRTTN 548 (563)
Q Consensus 487 g~nyg~~~~----a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~----l~l~l~~R~r~ 548 (563)
|+.+|+... +..+||.+.+... +-.+.|+..|++.+++++++.+ ..+..++|+|+
T Consensus 368 g~~~g~~~~~~~lg~~igp~i~G~l~-------~~~g~~~~~f~~~~~~~li~~~~~~~~~~~~~~~~~~ 430 (455)
T TIGR00892 368 SSAVGLVTIVECCAVLIGPPLAGRLV-------DATKNYKYIFYASGSIVVSAGLFLAIGNYINYRLLAK 430 (455)
T ss_pred hhHHhHHHHHHHHHHHccccceeeee-------hhcCCcchHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998764 4555555555332 1123489999888877776655 33445555555
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-20 Score=204.90 Aligned_cols=391 Identities=16% Similarity=0.238 Sum_probs=223.9
Q ss_pred hHHHHHHHHHHHHhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHH
Q 008514 15 RWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIG 93 (563)
Q Consensus 15 Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~G 93 (563)
+|..........+..-..|.++.+.+.+++.+|+|.+|.+++.....++..+ .++.|.+.||+|+|.++.++.+...++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~ 114 (476)
T PLN00028 35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPA 114 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3444444444455555568899999999999999999999987777777766 589999999999999999888877666
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHHhcCCC
Q 008514 94 YGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 172 (563)
Q Consensus 94 y~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~ 172 (563)
..+..+ .+ +++.+.+..++.|.+.+.. ..+.....++|| ++||++.|+..+...+++.+-..+..
T Consensus 115 ~~~~~~-----~~--s~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~------ 180 (476)
T PLN00028 115 VFCMSL-----VS--SATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMP------ 180 (476)
T ss_pred HHHHHH-----hc--CHHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHH------
Confidence 554322 22 3455544444455554432 333444668898 57999999987655555544332221
Q ss_pred hhHHHHHHHHHHHHHHHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHH
Q 008514 173 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFV 252 (563)
Q Consensus 173 ~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 252 (563)
.+...+... . ..+....+..+.+ .+ ....+.++
T Consensus 181 ------------~i~~~~~~~-----~------~~~~~gWr~~f~i--------~g----------------~l~l~~~l 213 (476)
T PLN00028 181 ------------LVFPLIKDA-----G------APSFTAWRIAFFV--------PG----------------LLHIIMGI 213 (476)
T ss_pred ------------HHHHHHHhc-----C------CcchhhhHHHHHH--------HH----------------HHHHHHHH
Confidence 000000000 0 0000011111111 00 00011110
Q ss_pred HhhcccccchhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhh
Q 008514 253 LLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHA 332 (563)
Q Consensus 253 ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (563)
+.. +..+ ++ | +++. ++ .+++. +
T Consensus 214 ~~~----------~~~~-~~---------p-~~~~-------~~-----~~~~~--~----------------------- 235 (476)
T PLN00028 214 LVL----------TLGQ-DL---------P-DGNY-------RE-----LKKSG--T----------------------- 235 (476)
T ss_pred HHH----------HHcC-cC---------C-CCch-------hh-----HHhcC--c-----------------------
Confidence 000 0000 00 0 0000 00 00000 0
Q ss_pred hhhhhhhhhccCCCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchh--HHHHHHHHHHhh
Q 008514 333 AAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFL 409 (563)
Q Consensus 333 ~~~~~~~~~~~~~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~--~~Vsl~si~n~~ 409 (563)
.+ + ++ ....+++.++++.+|++++.+++..+....+.+.+.+..++ .|.+... ...+++.+++.+
T Consensus 236 -------~~--~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~i 303 (476)
T PLN00028 236 -------MP--K-DS--FSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLF 303 (476)
T ss_pred -------cc--c-cc--HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 00 0 00 01135678899999999998877666666555556666654 5887654 377889999999
Q ss_pred hhhhhhhhhhhhhhhcCCc-hhHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHh----hhhhhcchhHHHHHHhhcc
Q 008514 410 GRVGGGYFSEIIVRDYAYP-RPVAMAVAQFVMAIGHIFLGMGW-PGAMYVGTLLIGL----GYGAHWAIVPAAASELFGL 483 (563)
Q Consensus 410 GRl~~G~lsD~~~~~~~~~-r~~~l~~~~~~~~~~~lll~~~~-~~~l~~~~~l~Gl----~~G~~~~l~p~i~se~FG~ 483 (563)
||+++|+++||++||+... |.+...+...+..+..+++.... ........++.++ +.|..+++.| + ++.
T Consensus 304 g~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~-~~~ 378 (476)
T PLN00028 304 ARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVP----F-VSR 378 (476)
T ss_pred HHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCc----c-cCh
Confidence 9999999999999875432 44444444444433333333222 1122223333344 4555555554 3 356
Q ss_pred CcchhhhhhhhhchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008514 484 KKFGALYNFLTLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRT 546 (563)
Q Consensus 484 k~fg~nyg~~~~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~ 546 (563)
|+.|+++|++..+..+|+.+.+.... ..+.+.|+.+|++.+++.+++.++.++++..+
T Consensus 379 ~~~g~~~g~~~~~g~lg~~i~~~l~~-----~~~~~~y~~~f~~~~~~~~i~~~~~~~~~~~~ 436 (476)
T PLN00028 379 RSLGVISGLTGAGGNVGAVLTQLLFF-----TGSSYSTETGISLMGVMIIACTLPVAFIHFPQ 436 (476)
T ss_pred hhchhhhhhhhccccHHHHHHHHHHH-----hcCCccHhhHHHHHHHHHHHHHHHHHheeccc
Confidence 89999999998766667666654321 02235699999999999989888887775333
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.2e-19 Score=192.00 Aligned_cols=410 Identities=13% Similarity=0.064 Sum_probs=229.4
Q ss_pred ccchHHHHHHHHHHHH-hcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHH
Q 008514 12 FNNRWLVFVAAMWIQS-CAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQ 89 (563)
Q Consensus 12 ~~~Rw~~l~a~~~i~l-~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~ 89 (563)
.+.+|.++....+.-. .--.-+.+++-.|++++++|+|.+|+.++..+..++..+ .++.|.+.||+|+|.++.++.+.
T Consensus 24 ~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~ 103 (467)
T PRK09556 24 FKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLIL 103 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHH
Confidence 3344544433333322 223456788889999999999999999987777777654 78999999999999998888777
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHHh
Q 008514 90 NFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMI 168 (563)
Q Consensus 90 ~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~ 168 (563)
..++...+.....+.. ++++.+.++-++.|.+++....+......+||| ++||++.|+......+++++-..+....
T Consensus 104 ~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~ 181 (467)
T PRK09556 104 SAICMLGFGASLGSGS--VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWG 181 (467)
T ss_pred HHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHH
Confidence 6555554443333322 357887777777778888777888888899998 5699999999888888887654332100
Q ss_pred cCCChhHHHHHHHHHHHHHHHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHH
Q 008514 169 HAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTV 248 (563)
Q Consensus 169 f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 248 (563)
....+ +. ..+. . +...+ ....
T Consensus 182 ---------------------~~~~~----~~-------~~~~---~--------f~~~g----------------~~~~ 202 (467)
T PRK09556 182 ---------------------ANYFF----DG-------HVIG---M--------FIFPS----------------IIAL 202 (467)
T ss_pred ---------------------HHhhc----cC-------cchh---H--------HHHHH----------------HHHH
Confidence 00000 00 0000 0 00000 0000
Q ss_pred HHHHHhhcccccchhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHH
Q 008514 249 ILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQAR 328 (563)
Q Consensus 249 i~~~ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (563)
+..++.+. +.++ +|++.... ++ ++ . . ++..++ ++.
T Consensus 203 ~~~i~~~~---------~~~~--~p~~~~~~-----~~--------~~-~---~-~~~~~~-------~~~--------- 237 (467)
T PRK09556 203 IIGFIGLR---------YGSD--SPEELGWG-----KA--------EE-I---F-GEPISE-------EDK--------- 237 (467)
T ss_pred HHHHHHHH---------hCCC--ChhhcCCC-----Ch--------hh-c---c-cCccch-------hhh---------
Confidence 00000000 1111 11110000 00 00 0 0 000000 000
Q ss_pred HHhhhhhhhhhhhccCCCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchhH--HHHHHHH
Q 008514 329 LFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTHI--FVSMISI 405 (563)
Q Consensus 329 ~~~~~~~~~~~~~~~~~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~~--~Vsl~si 405 (563)
. .+.+ +....+.-.++.+|++.+|.+++..++....-..+...+....++ +|++..+. ..++..+
T Consensus 238 ---------~-~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~ 305 (467)
T PRK09556 238 ---------E-TEST--DMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEI 305 (467)
T ss_pred ---------c-cccc--cCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 0 0000 000001112347899999999998887666555555556666654 78886543 6678889
Q ss_pred HHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHhhhhhhcchhHHHHHHhhccC
Q 008514 406 WNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLK 484 (563)
Q Consensus 406 ~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~-~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k 484 (563)
++.+|++++|+++||++||+. ..............+++.... ...+++...++|+...+........+.|.+..+
T Consensus 306 ~~~ig~~~~G~lsDr~g~r~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~ 381 (467)
T PRK09556 306 GALVGSLLWGWLSDLANGRRA----LVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKK 381 (467)
T ss_pred HHHHHHHHHHHHHHHHCCCch----HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchh
Confidence 999999999999999987432 121111111111111222222 223445556667543333334446777999999
Q ss_pred cchhhhhhhhhc-----hhhhhhhccCCCC---CCCCc-cccCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008514 485 KFGALYNFLTLA-----NPAGSIFTSMPRV---DEPLK-CEGSICYFLTSMIMSGLCIVAVILSMILV 543 (563)
Q Consensus 485 ~fg~nyg~~~~a-----~~vg~~l~~~~~~---~~~~~-C~G~~cy~~~f~i~~~~~~~~~~l~l~l~ 543 (563)
+.|+-.|+.... ..++|.+.+...+ ++... =.....|+..|.+..++++++.++.+.+.
T Consensus 382 ~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 449 (467)
T PRK09556 382 AIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVA 449 (467)
T ss_pred hHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987532 2344555543221 00000 00023499999999888888887777665
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.3e-19 Score=190.66 Aligned_cols=380 Identities=16% Similarity=0.137 Sum_probs=212.5
Q ss_pred CcccccccccHHHHhhhCCChhhHHHHHHHHhhhh-hhhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 008514 30 GIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVL 108 (563)
Q Consensus 30 Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~-~~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~ 108 (563)
...+.++.+.|++++++|+|.+|..++.....++. ...++.|.+.||+|+|.++.++.+...++..+.... +
T Consensus 37 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~ 109 (434)
T PRK11663 37 FTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS-------S 109 (434)
T ss_pred HhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH-------h
Confidence 34457788999999999999999999866666666 458899999999999999999988877776543221 2
Q ss_pred hHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 008514 109 PLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMV 187 (563)
Q Consensus 109 s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v 187 (563)
++|.+++..++.|.+.+..+.+......+|||+ +||++.|+.-.+.++++.+-..+...+.+.
T Consensus 110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~---------------- 173 (434)
T PRK11663 110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH---------------- 173 (434)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------------
Confidence 467666555555666666667778888899985 699999999999888887665444211100
Q ss_pred HHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhccc
Q 008514 188 VIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFF 267 (563)
Q Consensus 188 ~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~ 267 (563)
.+ .+..+.+ .+ ....+..+++.. ++
T Consensus 174 ----------~g------------w~~~f~~--------~~----------------i~~~~~~~~~~~---------~~ 198 (434)
T PRK11663 174 ----------YG------------WRYGMMI--------AG----------------IIAIVVGLFLCW---------RL 198 (434)
T ss_pred ----------cc------------HHHHHHH--------HH----------------HHHHHHHHHHHH---------Hc
Confidence 00 0000000 00 000000000000 11
Q ss_pred cCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCC
Q 008514 268 LERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPH 347 (563)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 347 (563)
+++ +++.. .++.++.+ ++. ++.+ + +++..+.
T Consensus 199 ~~~--p~~~~---~~~~~~~~--------------~~~--~~~~-------~---------------------~~~~~~~ 229 (434)
T PRK11663 199 RDK--PQAMG---LPSVGEWR--------------HDA--LELA-------Q---------------------QQEGAGL 229 (434)
T ss_pred CCC--HhhcC---CCCccccc--------------ccc--cccc-------h---------------------hccccCC
Confidence 111 11000 00000000 000 0000 0 0000000
Q ss_pred cCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHH-HhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 008514 348 RGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRD 424 (563)
Q Consensus 348 ~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~ 424 (563)
...+.-....+|++.+|.+.+.+++....-..+.+.+.++.+ +.|++..+ ...+++.+++.+||+++|+++||+.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~ 309 (434)
T PRK11663 230 SRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNG 309 (434)
T ss_pred ChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccC
Confidence 000110123567899999887766544433333345556664 46887654 378889999999999999999999554
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh----hchhhh
Q 008514 425 YAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAG 500 (563)
Q Consensus 425 ~~~~r~~~l~~~~~~~~~~~lll~~~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~----~a~~vg 500 (563)
++.+......+...+..+..+++.......++....++|+...+...+....++|.|+.++.|+--|+.. ++..+|
T Consensus 310 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~ 389 (434)
T PRK11663 310 NRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALS 389 (434)
T ss_pred CccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHh
Confidence 3222111212121211211111111111122223333343322233455677899999999999988765 455666
Q ss_pred hhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 008514 501 SIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVH 544 (563)
Q Consensus 501 ~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~ 544 (563)
|.+++... +..+ |+..|++.+++++++++..+...+
T Consensus 390 p~~~g~l~-------~~~g-~~~~f~~~~~~~~~~~~~~~~~~~ 425 (434)
T PRK11663 390 GYPLAKVL-------EIWH-WTGFFVVISIAAGISALLLLPFLN 425 (434)
T ss_pred cccHHHHH-------Hhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66655433 1123 899999888888777665544333
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.6e-19 Score=190.61 Aligned_cols=412 Identities=15% Similarity=0.143 Sum_probs=229.0
Q ss_pred ccchHHHHHHHHHHHHhcCcc-cccccccHHHHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHHHHHHH
Q 008514 12 FNNRWLVFVAAMWIQSCAGIG-YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQ 89 (563)
Q Consensus 12 ~~~Rw~~l~a~~~i~l~~Gt~-Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~iG~~~ 89 (563)
.+++|..+.+..+........ +.++..-|.++++ |+|.+|.+++.....++.. ..++.|.+.||+|+|.++.++.+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~ 102 (452)
T PRK11273 24 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 102 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHH
Confidence 345676655544443333322 3467788999988 9999999998666666664 488999999999999999999887
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHHh
Q 008514 90 NFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMI 168 (563)
Q Consensus 90 ~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~ 168 (563)
..++.....+.-.. ..+++.+....++.|.+.+..+........++|| ++||++.|+.-.+.++++.+..++....
T Consensus 103 ~~i~~~~~~~~~~~---~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~ 179 (452)
T PRK11273 103 AAAVMLFMGFVPWA---TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLG 179 (452)
T ss_pred HHHHHHHHHhhhcc---cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 76666654332111 1245555555556666677666666777889997 4599999998777777765554432100
Q ss_pred cCCChhHHHHHHHHHHHHHHHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHH
Q 008514 169 HAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTV 248 (563)
Q Consensus 169 f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 248 (563)
. ... . ..+. ++++.+ ....
T Consensus 180 ~---------------------~~~-----~-----------gw~~--------~f~i~~----------------~~~~ 198 (452)
T PRK11273 180 M---------------------AWF-----N-----------DWHA--------ALYMPA----------------FAAI 198 (452)
T ss_pred H---------------------HHh-----c-----------cHHH--------HHHHHH----------------HHHH
Confidence 0 000 0 0000 000000 0000
Q ss_pred HHHHHhhcccccchhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHH
Q 008514 249 ILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQAR 328 (563)
Q Consensus 249 i~~~ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (563)
+..++... +.+++ +++.. .++ +++. +++.+++.+
T Consensus 199 ~~~~l~~~---------~~~~~--~~~~~-~~~--~~~~---------------~~~~~~~~~----------------- 232 (452)
T PRK11273 199 LVALFAFA---------MMRDT--PQSCG-LPP--IEEY---------------KNDYPDDYN----------------- 232 (452)
T ss_pred HHHHHHHH---------HccCC--HhhcC-CCC--hhhh---------------hhccccccc-----------------
Confidence 00000000 11111 11000 000 0000 000000000
Q ss_pred HHhhhhhhhhhhhccCCCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchhH--HHHHHHH
Q 008514 329 LFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTHI--FVSMISI 405 (563)
Q Consensus 329 ~~~~~~~~~~~~~~~~~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~~--~Vsl~si 405 (563)
.+. + ++.+ ..+.-.+.++|++.+|.+++..++....-..+.+......++ .|++..+. ..+++++
T Consensus 233 -------~~~--~-~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~ 300 (452)
T PRK11273 233 -------EKH--E-QELT--AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEY 300 (452)
T ss_pred -------ccc--C-CCcc--HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 000 0 0000 001112346789999999888877665544555677777776 57775543 5668889
Q ss_pred HHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh--c-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhc
Q 008514 406 WNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM--G-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFG 482 (563)
Q Consensus 406 ~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~--~-~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG 482 (563)
++.+|+++.|+++||+.++++... ......+..++.+++.. . ....+++...++|....+........+.|.+.
T Consensus 301 ~~~~g~~~~G~l~dr~~~~r~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p 377 (452)
T PRK11273 301 AGIPGTLLCGWMSDKVFRGNRGAT---GVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAP 377 (452)
T ss_pred HHHHHHHHHHHHHHHHccCCcchH---HHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcC
Confidence 999999999999999965333221 11112222222222221 1 22223334445555443333344556789999
Q ss_pred cCcchhhhhhhhh----chh-hhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Q 008514 483 LKKFGALYNFLTL----ANP-AGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKS 557 (563)
Q Consensus 483 ~k~fg~nyg~~~~----a~~-vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r~~~~~~~~~~ 557 (563)
.+..|+..|+... +.. +||.+.+...+ . . + |+..|.++.++++++++...++.+-+||-.+++..++
T Consensus 378 ~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~-~----~--g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (452)
T PRK11273 378 KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD-F----F--G-WDGGFMVMIGGSILAVILLIVVMIGEKRHHEELLQKR 449 (452)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH-H----h--c-chHHHHHHHHHHHHHHHHHHHHhccccchHHHHHhhh
Confidence 9999999998653 222 24555443320 0 1 2 9999999999999998888876666666566665544
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.4e-19 Score=186.90 Aligned_cols=351 Identities=12% Similarity=0.069 Sum_probs=223.1
Q ss_pred cccccccHHHHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 008514 33 YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLW 111 (563)
Q Consensus 33 Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~ 111 (563)
+..+...|++++++|+|.+|..++.....++.. ..++.|++.||+|+|.++..|.++..+|..... ..+ +++
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~-----~a~--~~~ 98 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRE-----LYP--QSA 98 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHH-----HCc--chH
Confidence 668899999999999999999997666666654 478999999999999999999999888887532 232 466
Q ss_pred HHHHHHHHhccCcchhhhhHHHHHHHhcCCCCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhh
Q 008514 112 AMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIAL 191 (563)
Q Consensus 112 ~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~l~~ 191 (563)
.+.+.-++.|.|.+..+........|+||++||.+.|+..++..+++.+-..+....-
T Consensus 99 ~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~---------------------- 156 (393)
T PRK09705 99 LLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLV---------------------- 156 (393)
T ss_pred HHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 6666788888999988877777778899999999999987766666655543332000
Q ss_pred heeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhccccCCC
Q 008514 192 MFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERT 271 (563)
Q Consensus 192 ~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~~~~~ 271 (563)
+.. .+.+ . .+. .+++..++.+.. ..+ . .++
T Consensus 157 -------~~~-----~~w~---~---------~~~------------------~~~~~~~~~~~~--~~~-----~-~~~ 186 (393)
T PRK09705 157 -------QHS-----ETWY---Q---------TLA------------------WWALPAVVALFA--WWW-----Q-SAR 186 (393)
T ss_pred -------Hhc-----CCHH---H---------HHH------------------HHHHHHHHHHHH--HHH-----H-hcC
Confidence 000 0000 0 000 000000000000 000 0 000
Q ss_pred ChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCCcCCC
Q 008514 272 DPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGED 351 (563)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 351 (563)
+ | +++ ++ + +
T Consensus 187 ~---------~-~~~------------------~~----------------------------------~----~----- 195 (393)
T PRK09705 187 E---------V-ASS------------------HK----------------------------------T----T----- 195 (393)
T ss_pred C---------C-ccc------------------cC----------------------------------C----C-----
Confidence 0 0 000 00 0 0
Q ss_pred CcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCch
Q 008514 352 FTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 429 (563)
Q Consensus 352 ~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r 429 (563)
.+.++.+|++++|.+.+.+++....-..+.+...++.++.|.+..+ ...+++++++.+||+.+|++.||++|++.
T Consensus 196 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~--- 272 (393)
T PRK09705 196 TTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKL--- 272 (393)
T ss_pred cCCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHH---
Confidence 0012456788899888777666555556667788888888887654 38899999999999999999999877422
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHhhhhhhcchhHHHHHHhhc-cCcchhhhhhhh----hchhhhhhhc
Q 008514 430 PVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFG-LKKFGALYNFLT----LANPAGSIFT 504 (563)
Q Consensus 430 ~~~l~~~~~~~~~~~lll~~~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG-~k~fg~nyg~~~----~a~~vg~~l~ 504 (563)
. .....+..++.+++....+....+...+.|++.|..+......+.+.++ .++-|+.+|++. ++..+||.+.
T Consensus 273 -~--~~~~~l~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~ 349 (393)
T PRK09705 273 -L--MLALVLQLVGFCGFIWLPLQLPVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFS 349 (393)
T ss_pred -H--HHHHHHHHHHHHHHHHccchHHHHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2222333334333322121111223456788888888877777788886 456678887654 5666777777
Q ss_pred cCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008514 505 SMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRT 546 (563)
Q Consensus 505 ~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~ 546 (563)
+... +.. +.|+..|.+.+.+++++.++.+.+..++
T Consensus 350 G~l~-----~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (393)
T PRK09705 350 GVLR-----SIS--GNYLMDWAFHALCVVGLMIITLRFAPAR 384 (393)
T ss_pred HHHH-----HHh--CCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6543 112 3499999999888887766655544333
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.2e-18 Score=179.61 Aligned_cols=380 Identities=14% Similarity=0.073 Sum_probs=234.9
Q ss_pred hhccchHHHHHHHHHHHHhcCc-ccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHH
Q 008514 10 SFFNNRWLVFVAAMWIQSCAGI-GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGA 87 (563)
Q Consensus 10 ~~~~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~ 87 (563)
+..+++|.+++.+.++..+.+. .+.++...|++++++|+|.+|.+.+.....++..+ .++.|.+.||+|+|.++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 87 (406)
T PRK11551 8 ASSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSV 87 (406)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 4556899988888888877665 57889999999999999999999987777777755 788999999999999999998
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHH
Q 008514 88 LQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYT 166 (563)
Q Consensus 88 ~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~ 166 (563)
++..++..+..+ . .+++.+....++.|.+.+..+++......++|| ++||++.|+...+..+++.+-..+..
T Consensus 88 ~~~~~~~~~~~~-----~--~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 160 (406)
T PRK11551 88 ALFGLFSLATAQ-----A--WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGV 160 (406)
T ss_pred HHHHHHHHHHHH-----h--ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877666654322 1 246666666777788888888888888899997 57999999988888887766543331
Q ss_pred HhcCCChhHHHHHHHHHHHHHHHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHH
Q 008514 167 MIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIF 246 (563)
Q Consensus 167 ~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 246 (563)
...+. ......+.+ .. ..
T Consensus 161 ~~~~~--------------------------------------~~~~~~~~~---------~~---------------~~ 178 (406)
T PRK11551 161 LAAGD--------------------------------------AAWRHIFYV---------GG---------------VG 178 (406)
T ss_pred HHccc--------------------------------------cCHHHHHHH---------HH---------------HH
Confidence 11000 000000000 00 00
Q ss_pred HHHHHHHhhcccccchhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHH
Q 008514 247 TVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQ 326 (563)
Q Consensus 247 ~~i~~~ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (563)
..+.+++... +.+++++++ +++++ ++++ +..
T Consensus 179 ~~~~~~~~~~---------~l~~~~~~~-------~~~~~----------------~~~~----------~~~------- 209 (406)
T PRK11551 179 PLLLVPLLMR---------WLPESRAFA-------QAAGA----------------GKQR----------APV------- 209 (406)
T ss_pred HHHHHHHHHH---------hCCCChhHH-------hccCc----------------chhh----------hhh-------
Confidence 0000000000 111110000 00000 0000 000
Q ss_pred HHHHhhhhhhhhhhhccCCCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchh--HHHHHHH
Q 008514 327 ARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMIS 404 (563)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~--~~Vsl~s 404 (563)
.+...+ + + +.+..|.++..+++.......+.+...++.++.|.++.. ...++.+
T Consensus 210 -----------~~~~~~-------~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~ 265 (406)
T PRK11551 210 -----------LRALFG-------E---G---RATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFN 265 (406)
T ss_pred -----------HHHHhh-------h---h---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHH
Confidence 000000 0 0 112334444444443333344555677788888887654 3678888
Q ss_pred HHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcc
Q 008514 405 IWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGL 483 (563)
Q Consensus 405 i~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~ 483 (563)
+++.+|++.+|+++||++|++. . ........++.+++.. .....+++...+.|++.++.....+.++.|.+..
T Consensus 266 ~~~~~~~~~~g~l~dr~g~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 339 (406)
T PRK11551 266 IGGALGSLLIGALMDRLRPRRV----V--LLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPT 339 (406)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH----H--HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcch
Confidence 9999999999999999977432 1 2222223333333322 2233455677788999888889999999999999
Q ss_pred Ccchhhhhhhh----hchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 008514 484 KKFGALYNFLT----LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVH 544 (563)
Q Consensus 484 k~fg~nyg~~~----~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~ 544 (563)
++.|+..|+.. ++..+||.+.+...+ -.+.|...+.+...+++++.++++.+.+
T Consensus 340 ~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (406)
T PRK11551 340 QVRGTGVGAAVAVGRLGSMAGPLLAGQLLA-------LGRSTVGVIGASIPVILVAALAALLLVS 397 (406)
T ss_pred hhhhhhhhHHHHhhhHHHHHHhhhHhhhhc-------cCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999775 456666666665431 0134777777777777777766665543
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.2e-18 Score=175.60 Aligned_cols=377 Identities=15% Similarity=0.127 Sum_probs=228.0
Q ss_pred ccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH
Q 008514 32 GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPL 110 (563)
Q Consensus 32 ~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~ 110 (563)
.+.++...|.+++++|+|..|...+.....++..+ .++.|.+.||+|+|.++.++.+...++..+.... +++
T Consensus 10 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 82 (399)
T TIGR00893 10 RANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-------GAY 82 (399)
T ss_pred HHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-------cCH
Confidence 35678888999999999999999987777777654 7899999999999999999988877777654332 146
Q ss_pred HHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q 008514 111 WAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVI 189 (563)
Q Consensus 111 ~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~l 189 (563)
|.+.+..++.|.|.+...++......+++| ++||.+.|+.....+++..+-..+...+.+..
T Consensus 83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~----------------- 145 (399)
T TIGR00893 83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF----------------- 145 (399)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC-----------------
Confidence 777767777788888888888888999998 56999999999998888877655443211000
Q ss_pred hhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhccccC
Q 008514 190 ALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLE 269 (563)
Q Consensus 190 ~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~~~ 269 (563)
+ ....+.+. + ....+..++... +.++
T Consensus 146 ---------~------------~~~~~~~~---~---------------------~~~~~~~~~~~~---------~~~~ 171 (399)
T TIGR00893 146 ---------S------------WQWAFIIE---G---------------------VLGIIWGVLWLK---------FIPD 171 (399)
T ss_pred ---------C------------chHHHHHH---H---------------------HHHHHHHHHhhh---------eecC
Confidence 0 00000000 0 000000000000 0111
Q ss_pred CCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCCcC
Q 008514 270 RTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRG 349 (563)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 349 (563)
++++ + +...+ ++++ +..+...++ . ++ +.+++.
T Consensus 172 ~~~~--------~-~~~~~----~~~~----~~~~~~~~~----------------------------~-~~--~~~~~~ 203 (399)
T TIGR00893 172 PPQK--------A-KWLTE----EEKY----IVVGGLLAE----------------------------Q-QG--KGPSTP 203 (399)
T ss_pred CCCc--------c-ccCCH----HHHh----hcchhhccc----------------------------c-cc--ccccCC
Confidence 1000 0 00000 0000 000000000 0 00 000011
Q ss_pred CCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcC
Q 008514 350 EDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYA 426 (563)
Q Consensus 350 ~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~ 426 (563)
+..+.++.+|++++|.+.+..++......++.....+..++ .|.++.+ ...++..+.+.+|++.+|+++||++||+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 283 (399)
T TIGR00893 204 KKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGK 283 (399)
T ss_pred CccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 23356789999999999999888887777777777777765 5776543 36778899999999999999999988652
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhc--CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhh----chhhh
Q 008514 427 YPRPVAMAVAQFVMAIGHIFLGMG--WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL----ANPAG 500 (563)
Q Consensus 427 ~~r~~~l~~~~~~~~~~~lll~~~--~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~----a~~vg 500 (563)
................+...+... ......+...+++....+.......+++|.++.++.|+.+|+... +..+|
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~ 363 (399)
T TIGR00893 284 SLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVG 363 (399)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhh
Confidence 110000111111111111111211 122233333333333333788888999999999999999998764 55556
Q ss_pred hhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 008514 501 SIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 541 (563)
Q Consensus 501 ~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~ 541 (563)
+.+.+... +..+.|+..|.+.+.+++++.++.++
T Consensus 364 ~~i~g~l~-------~~~g~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 364 PIVIGAIA-------ATTGSFAGALMVVAALALIGALSYLL 397 (399)
T ss_pred hHHhhhhc-------cCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 65555433 11245899999988888877766554
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-17 Score=174.21 Aligned_cols=373 Identities=15% Similarity=0.141 Sum_probs=228.5
Q ss_pred ccchHHHHHHHHHHHHhcC-cccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHH
Q 008514 12 FNNRWLVFVAAMWIQSCAG-IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQ 89 (563)
Q Consensus 12 ~~~Rw~~l~a~~~i~l~~G-t~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~ 89 (563)
+.|||.....+.+.....| ..+.++..-|++++++|+|.+|+..+.....++..+ .++.|++.||+|+|.++.++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~ 81 (394)
T PRK03699 2 NSNRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFAL 81 (394)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4577766655555555554 468899999999999999999999987767777655 67899999999999998888887
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHHHHh
Q 008514 90 NFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMI 168 (563)
Q Consensus 90 ~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~~~~ 168 (563)
..++..+... . +++|.+...-++.|.+.+..++.+.....++||+ +||.+.++.-..+++++.+...+...+
T Consensus 82 ~~i~~~l~~~-----~--~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 154 (394)
T PRK03699 82 MILAVAGLMF-----S--HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL 154 (394)
T ss_pred HHHHHHHHHH-----c--chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777665322 1 2466666555666677777777777778899985 599999988888888876665433211
Q ss_pred cCCChhHHHHHHHHHHHHHHHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHH
Q 008514 169 HAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTV 248 (563)
Q Consensus 169 f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 248 (563)
.... .+ .+. .+. ..++
T Consensus 155 ~~~~-------------------------~g------------w~~---------~f~------------------~~~~ 170 (394)
T PRK03699 155 LARS-------------------------IE------------WYW---------VYA------------------CIGL 170 (394)
T ss_pred Hhcc-------------------------cc------------HHH---------HHH------------------HHHH
Confidence 1000 00 000 000 0011
Q ss_pred HHHHHhhcccccchhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHH
Q 008514 249 ILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQAR 328 (563)
Q Consensus 249 i~~~ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (563)
..++.... . +..+.++ ++++++ ++++
T Consensus 171 ~~~~~~~~-------~-~~~~~p~---------~~~~~~---------------~~~~---------------------- 196 (394)
T PRK03699 171 VYVAIFIL-------T-LFSEFPA---------LGKHAP---------------KADK---------------------- 196 (394)
T ss_pred HHHHHHHH-------H-HhcCCcc---------ccccCc---------------cccC----------------------
Confidence 00000000 0 0000000 000000 0000
Q ss_pred HHhhhhhhhhhhhccCCCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchh--HHHHHHHH
Q 008514 329 LFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISI 405 (563)
Q Consensus 329 ~~~~~~~~~~~~~~~~~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~--~~Vsl~si 405 (563)
+ . .+ . ..++.+|.+.+..++....-..+.+-+..+.++ .|.++.+ ..++++.+
T Consensus 197 ------------~-~--~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~ 252 (394)
T PRK03699 197 ------------P-V--AK--E-------KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWM 252 (394)
T ss_pred ------------c-c--cc--c-------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHH
Confidence 0 0 00 0 114567888777766554433445556677755 5887654 37889999
Q ss_pred HHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccC
Q 008514 406 WNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLK 484 (563)
Q Consensus 406 ~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k 484 (563)
++.+||+++|+++||+++|+. . ....++..+..+++.. .....+.+...+.|++.|..+.+......|.. .+
T Consensus 253 ~~~ig~~~~g~l~dr~~~~~~----l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~~ 325 (394)
T PRK03699 253 AYMVGMWIFSFIVRFFDLQRI----L--TVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQT-KV 325 (394)
T ss_pred HHHHHHHHHHHHHHHhchhhH----H--HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cC
Confidence 999999999999999977432 1 2222223333333322 23334555677889999988888888877755 46
Q ss_pred cchhhhhhhh----hchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008514 485 KFGALYNFLT----LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 548 (563)
Q Consensus 485 ~fg~nyg~~~----~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r~ 548 (563)
+.++.+|.+. ++..+||.+.+...+ . -.|+.+|++..++++++.++++.+.+-.||
T Consensus 326 ~~~~~~g~~~~~~~~g~~i~p~~~G~l~~-------~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (394)
T PRK03699 326 ASPKLVNFILTCGTIGTMLTFVVTSPIVA-------H-FGLQAALLTANGLYAVVFVMCILLGFVSKH 385 (394)
T ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHHHHH-------H-hCchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6667777654 455666666554320 0 127889999988888888777776665554
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=178.77 Aligned_cols=145 Identities=8% Similarity=-0.087 Sum_probs=108.8
Q ss_pred chHHHHHHHHHHHHhcC-cccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHH
Q 008514 14 NRWLVFVAAMWIQSCAG-IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNF 91 (563)
Q Consensus 14 ~Rw~~l~a~~~i~l~~G-t~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~ 91 (563)
.||..+....+.-.+.. -.+..+.-.++|++++|+|.+|++++.....++..+ .++.|.+.||+|+|.++.++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~ 84 (412)
T TIGR02332 5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWG 84 (412)
T ss_pred ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHH
Confidence 35554444444333322 245667778899999999999999987777777654 7899999999999999999998887
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHH
Q 008514 92 IGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVY 165 (563)
Q Consensus 92 ~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~ 165 (563)
++..+..++ ++++.+.+.-++.|.+.+..+++......++||. +||++.|+...+.+++..+-..+.
T Consensus 85 ~~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~ 152 (412)
T TIGR02332 85 IASTATMFA-------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILS 152 (412)
T ss_pred HHHHHHHHh-------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777764321 2356666666777888887777777778999985 699999999999888876654443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-16 Score=168.92 Aligned_cols=364 Identities=10% Similarity=0.054 Sum_probs=220.9
Q ss_pred cchHHHHHHHHHHHHhc-CcccccccccHHHHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHHHHHHHH
Q 008514 13 NNRWLVFVAAMWIQSCA-GIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQN 90 (563)
Q Consensus 13 ~~Rw~~l~a~~~i~l~~-Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~iG~~~~ 90 (563)
.+||..+..-.+.+... -..|.-+..-|++++++|+|++|+.++.....++.. ..++.|.+.||+|+|.++.++.+..
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 84 (390)
T PRK03545 5 KVAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLF 84 (390)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 45675444434444433 333444556789999999999999997666665554 4788999999999999999998887
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHHhc
Q 008514 91 FIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIH 169 (563)
Q Consensus 91 ~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f 169 (563)
.++..+... . +++|.+.+.-++.|.+.+..++.......+++| ++||++.|+.....+++..+-..+.....
T Consensus 85 ~~~~~~~~~-----~--~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~ 157 (390)
T PRK03545 85 IASHVLSAL-----A--WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIG 157 (390)
T ss_pred HHHHHHHHH-----h--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 777665322 2 246776665566677777777777777888997 57999999998888887765543332110
Q ss_pred CCChhHHHHHHHHHHHHHHHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHH
Q 008514 170 APDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVI 249 (563)
Q Consensus 170 ~~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i 249 (563)
+ .. + .+. .+.... ...++
T Consensus 158 ~--------~~------------------g------------w~~---------~f~~~~---------------~~~~l 175 (390)
T PRK03545 158 Q--------YL------------------G------------WRT---------TFLAIG---------------GGALI 175 (390)
T ss_pred H--------Hh------------------c------------HHH---------HHHHHH---------------HHHHH
Confidence 0 00 0 000 000000 00000
Q ss_pred HHHHhhcccccchhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHH
Q 008514 250 LFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARL 329 (563)
Q Consensus 250 ~~~ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (563)
..++... .. ++++++ ++ +
T Consensus 176 ~~~~~~~---------~~------------~~~~~~-------------------~~-~--------------------- 193 (390)
T PRK03545 176 TLLLLIK---------LL------------PLLPSE-------------------HS-G--------------------- 193 (390)
T ss_pred HHHHHHH---------hC------------CCCCCC-------------------Cc-c---------------------
Confidence 1000000 00 000000 00 0
Q ss_pred HhhhhhhhhhhhccCCCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchh--HHHHHHHHH
Q 008514 330 FHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIW 406 (563)
Q Consensus 330 ~~~~~~~~~~~~~~~~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~--~~Vsl~si~ 406 (563)
+..+.++.+|++.+|.++...++......+..+.+.++.++ .|.++.. ...+++++.
T Consensus 194 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~ 253 (390)
T PRK03545 194 --------------------SLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGA 253 (390)
T ss_pred --------------------hHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 00023568889999887766655444444444556666676 4776653 367889999
Q ss_pred HhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHH-h-hcCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccC
Q 008514 407 NFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFL-G-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLK 484 (563)
Q Consensus 407 n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll-~-~~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k 484 (563)
+.+|++..|+++||.+|+ ... ....+..++.+++ . ......+++..++.|++++.........+.|... +
T Consensus 254 ~~~g~~~~g~l~dr~~~~-----~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~ 325 (390)
T PRK03545 254 GIIGSVLFSRLGNRHPSG-----FLL--IAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-D 325 (390)
T ss_pred HHHHHHHHHHHhhccchh-----HHH--HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-C
Confidence 999999999999987552 111 2222222222222 2 2223356667888899888776777777778765 5
Q ss_pred cchhhhhh----hhhchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008514 485 KFGALYNF----LTLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 543 (563)
Q Consensus 485 ~fg~nyg~----~~~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~ 543 (563)
+.|+-.|+ ..++.++|+.+.+...+ .-.|+..|.+.+.+.+++++......
T Consensus 326 ~~~~~~g~~~~~~~~g~~~G~~~~G~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 326 ATDVAMALFSGIFNIGIGAGALLGNQVSL--------HLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------ccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 66665554 34677888888774430 12378999999888888777765443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.3e-17 Score=173.87 Aligned_cols=406 Identities=17% Similarity=0.159 Sum_probs=223.8
Q ss_pred hhhccchHHHHHHHHHHHHhcCc-ccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHH
Q 008514 9 VSFFNNRWLVFVAAMWIQSCAGI-GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVG 86 (563)
Q Consensus 9 ~~~~~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG 86 (563)
|+..+.||..+.+..+...+... ...++...|.+++ +|+|++|...+.....++..+ .++.|.+.||+|+|..+.++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~ 97 (438)
T TIGR00712 19 PTYKRLRWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAG 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHH
Confidence 33444577776665555544443 3446666788876 599999999986666666644 78999999999999998888
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHH
Q 008514 87 ALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVY 165 (563)
Q Consensus 87 ~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~ 165 (563)
.+...++....... ... ..+++.++...++.|.+.+..+........++|| ++||++.|+.-...++++.+...+.
T Consensus 98 ~~~~~~~~~~~~~~--~~~-~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~ 174 (438)
T TIGR00712 98 LILSAAVMLLMGFV--PWA-TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLV 174 (438)
T ss_pred HHHHHHHHHHHhcc--ccc-cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHH
Confidence 88877776653221 111 1245666555556666677666677777889997 5799999998888888777665443
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHH
Q 008514 166 TMIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIII 245 (563)
Q Consensus 166 ~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 245 (563)
....... . + .+. ++++.+ .
T Consensus 175 ~~~~~~~-------~------------------~------------w~~--------~f~~~~----------------~ 193 (438)
T TIGR00712 175 LLGMAWF-------N------------------D------------WHA--------ALYFPA----------------I 193 (438)
T ss_pred HHHHHHh-------h------------------h------------hHH--------HHHHHH----------------H
Confidence 2110000 0 0 000 000000 0
Q ss_pred HHHHHHHHhhcccccchhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHH
Q 008514 246 FTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQL 325 (563)
Q Consensus 246 ~~~i~~~ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (563)
...+..++... +.+++ +++.. . ++.++. +++.+++.. +
T Consensus 194 ~~~i~~~~~~~---------~~~~~--~~~~~-~--~~~~~~---------------~~~~~~~~~-----~-------- 231 (438)
T TIGR00712 194 CAIIVALFAFA---------MMRDT--PQSCG-L--PPIEEY---------------RNDYPDDYN-----E-------- 231 (438)
T ss_pred HHHHHHHHHHH---------hccCC--HHhcC-C--CCchhc---------------ccccccccc-----c--------
Confidence 00000000000 11111 11000 0 000000 000000000 0
Q ss_pred HHHHHhhhhhhhhhhhccCCCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchh--HHHHH
Q 008514 326 QARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSM 402 (563)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~--~~Vsl 402 (563)
. .+++ .+ .++...++.+|++.+|.+.+..++....-..+.....+..++ .|.++.. ...++
T Consensus 232 -------~------~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~ 295 (438)
T TIGR00712 232 -------K------AEQE--LT-AKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFL 295 (438)
T ss_pred -------c------cccc--cc-hHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHH
Confidence 0 0000 00 001112347899999999877666554434455677777776 4777654 36678
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhc---CchhHHHHHHHHHhhhhhhcchhHHHHHH
Q 008514 403 ISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG---WPGAMYVGTLLIGLGYGAHWAIVPAAASE 479 (563)
Q Consensus 403 ~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~---~~~~l~~~~~l~Gl~~G~~~~l~p~i~se 479 (563)
+++.+.+|++++|+++||++++++.. ..........++.+++... .....+....+.|+...+........+.|
T Consensus 296 ~~~~~~ig~~~~g~l~dr~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 372 (438)
T TIGR00712 296 YEYAGIPGTLLCGWMSDKVFKGNRGA---TGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALE 372 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccH---HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 99999999999999999996644322 1111111122222222211 12222333334444322222222346789
Q ss_pred hhccCcchhhhhhhhh----c-hhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008514 480 LFGLKKFGALYNFLTL----A-NPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 548 (563)
Q Consensus 480 ~FG~k~fg~nyg~~~~----a-~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r~ 548 (563)
.++.++.|+..|+... + ..+||++++... +.. .|..+|.+..+.+++++++.+++..-.||
T Consensus 373 ~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~-------~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (438)
T TIGR00712 373 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV-------DFF-GWDGGFMVMIGGSILAVILLIVVMIGEKR 438 (438)
T ss_pred hcChhheeeehhhhchHHHhhhhhhcchhHHHHH-------Hhc-cchHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999997642 2 235666655332 001 29999999999988888888876655443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-16 Score=168.00 Aligned_cols=149 Identities=18% Similarity=0.145 Sum_probs=113.8
Q ss_pred hhhccchHHHHHHHHHHHHhcCcc-cccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHH
Q 008514 9 VSFFNNRWLVFVAAMWIQSCAGIG-YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVG 86 (563)
Q Consensus 9 ~~~~~~Rw~~l~a~~~i~l~~Gt~-Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG 86 (563)
++..+.+|..+.......+..+.. +..+...+.+++++|+|..|..++.....++..+ +++.|.+.||+|+|.++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~ 89 (426)
T PRK12307 10 SEITRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWS 89 (426)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 333445565556666666666554 3445566788899999999999987777777755 78899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHH
Q 008514 87 ALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQV 164 (563)
Q Consensus 87 ~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i 164 (563)
.+...++.....+. .++|.+.+.-++.|.|.+..+++......++|| ++||++.|+...+.+++..+...+
T Consensus 90 ~~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l 161 (426)
T PRK12307 90 IVAYSVGTGLSGLA-------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYF 161 (426)
T ss_pred HHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHH
Confidence 99888887654322 246777777778888888888888888899998 459999999999999988766543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-16 Score=163.38 Aligned_cols=346 Identities=14% Similarity=0.177 Sum_probs=204.5
Q ss_pred cccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 008514 31 IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLP 109 (563)
Q Consensus 31 t~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s 109 (563)
....|+...|.+++++|+|.+|...+.....++..+ .++.|.+.||+|+|.++.+|.+...++..+.... ++
T Consensus 10 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~ 82 (379)
T TIGR00881 10 VRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS-------TS 82 (379)
T ss_pred hHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh-------hh
Confidence 345678888999999999999999987777777755 7899999999999999999998887777765433 14
Q ss_pred HHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 008514 110 LWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVV 188 (563)
Q Consensus 110 ~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~ 188 (563)
+|.+.+..++.|.+.+..+........+++|+ +||.+.|+......+++.+-..+.......
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------- 145 (379)
T TIGR00881 83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE----------------- 145 (379)
T ss_pred HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh-----------------
Confidence 67777677777888888888888889999985 699999999888888877665322111100
Q ss_pred HhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhcccc
Q 008514 189 IALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFL 268 (563)
Q Consensus 189 l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~~ 268 (563)
..+. + ..+.+ .+ ....+..++... +.+
T Consensus 146 --------~~~~---------~---~~~~~---~~---------------------~~~~~~~~~~~~---------~~~ 172 (379)
T TIGR00881 146 --------LYSW---------H---WVFIV---PG---------------------IIAIIVSLICFL---------LLR 172 (379)
T ss_pred --------cCCc---------h---hHHHH---HH---------------------HHHHHHHHHHhe---------eeC
Confidence 0000 0 00000 00 000000000000 111
Q ss_pred CCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCCc
Q 008514 269 ERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHR 348 (563)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 348 (563)
+++++. . .+++++.. + ++..++.+ + .++ +..
T Consensus 173 ~~~~~~--~---~~~~~~~~------~--------~~~~~~~~----~-----------------------~~~---~~~ 203 (379)
T TIGR00881 173 DSPQSC--G---LPPAEEMP------N--------EEPDGDAE----K-----------------------KEE---ELT 203 (379)
T ss_pred CCcccc--c---cCccccCc------c--------cccccccc----c-----------------------ccc---ccc
Confidence 111100 0 00000000 0 00000000 0 000 000
Q ss_pred CCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhc
Q 008514 349 GEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDY 425 (563)
Q Consensus 349 ~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~ 425 (563)
..+...++.+|++.+|.+.+..++.......+.....+..++ .|.++.+ ...++.++.+.+|+++.|+++||..+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 283 (379)
T TIGR00881 204 KKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGR 283 (379)
T ss_pred chHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCc
Confidence 012245678999999999888777655544444455555554 5777654 3678889999999999999999875533
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhh--c-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhh----chh
Q 008514 426 AYPRPVAMAVAQFVMAIGHIFLGM--G-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL----ANP 498 (563)
Q Consensus 426 ~~~r~~~l~~~~~~~~~~~lll~~--~-~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~----a~~ 498 (563)
+.+ ..........++.+.+.. . ......+...+.|+..++.......++.|.++.++-|+.+|+... +..
T Consensus 284 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ 360 (379)
T TIGR00881 284 RGP---LAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGI 360 (379)
T ss_pred chH---HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhh
Confidence 321 111111222222222221 1 122334455666766666666777889999999999999998764 444
Q ss_pred hhhhhcc
Q 008514 499 AGSIFTS 505 (563)
Q Consensus 499 vg~~l~~ 505 (563)
+|+.+.+
T Consensus 361 ~~~~~~g 367 (379)
T TIGR00881 361 LAGLPLG 367 (379)
T ss_pred hhhhhHH
Confidence 4444443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-16 Score=164.17 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=119.5
Q ss_pred hhhccchHHHHHHHHHHHHhcCcc-cccccccHHHHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHHHH
Q 008514 9 VSFFNNRWLVFVAAMWIQSCAGIG-YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVG 86 (563)
Q Consensus 9 ~~~~~~Rw~~l~a~~~i~l~~Gt~-Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~iG 86 (563)
|+..+++|..+.+..+...+.+.. +.++...+++++++|+|++|..++.....++.. .+++.|.+.||+|+|.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~ 83 (405)
T TIGR00891 4 RHLTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTS 83 (405)
T ss_pred CcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 445678888887777777777755 567888899999999999999998666666664 488999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHH
Q 008514 87 ALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVY 165 (563)
Q Consensus 87 ~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~ 165 (563)
.+...++..+... . +++|.+...-++.|.+.+..+.++.....+++| ++||.+.|+.-.+.+++..+-..+.
T Consensus 84 ~~~~~~~~~~~~~-----~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 156 (405)
T TIGR00891 84 IVLFSAGTLACGF-----A--PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVY 156 (405)
T ss_pred HHHHHHHHHHHHH-----h--ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8877777655322 1 257777777788888888888888888899998 5699999999988888876665444
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-16 Score=164.71 Aligned_cols=147 Identities=19% Similarity=0.147 Sum_probs=114.7
Q ss_pred ccchHHHHHHHHHHHHhcCc-ccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHH
Q 008514 12 FNNRWLVFVAAMWIQSCAGI-GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQ 89 (563)
Q Consensus 12 ~~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~ 89 (563)
.+++|..++.+.+...+.|. .+.++.+.|.+.+.+|+|..|.+.+.....++..+ .++.|.+.||+|+|.++.++.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 91 (398)
T TIGR00895 12 SRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL 91 (398)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 45567777777777766654 46788899999999999999999986666676655 78899999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHH
Q 008514 90 NFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVY 165 (563)
Q Consensus 90 ~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~ 165 (563)
..+++.+.... +++|.+.+..++.|.+.+..+.+......+++|+ +||.+.|+......+++.+-..+.
T Consensus 92 ~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 161 (398)
T TIGR00895 92 FSVFTLLCALA-------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLA 161 (398)
T ss_pred HHHHHHHHHHc-------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHH
Confidence 77777654321 2466666667777888888888888888999984 699999998888888876655443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-15 Score=159.44 Aligned_cols=355 Identities=15% Similarity=0.129 Sum_probs=204.5
Q ss_pred cccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHH-hcCCCCc
Q 008514 31 IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIV-TGRAPVL 108 (563)
Q Consensus 31 t~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~-~g~i~~~ 108 (563)
......+....+++++|+|.+++..+..+..++..+ .++.|.+.||+|+|.++.++.+...++........ .+.....
T Consensus 31 ~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (399)
T PRK05122 31 IGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVL 110 (399)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchh
Confidence 334555667779999999999999987777777654 88999999999999999999887766665543332 2211112
Q ss_pred hHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 008514 109 PLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMV 187 (563)
Q Consensus 109 s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v 187 (563)
+++.+.+.-++.|.|.+..+.+......+++| ++||++.|+.-....++..+-..+...+.+
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~----------------- 173 (399)
T PRK05122 111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH----------------- 173 (399)
T ss_pred HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH-----------------
Confidence 35556666778888888888887777788886 679999998765555543332222210000
Q ss_pred HHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhccc
Q 008514 188 VIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFF 267 (563)
Q Consensus 188 ~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~ 267 (563)
..+ +...+ +... ...++.. ++.
T Consensus 174 ---------~~g------------~~~~~---------~~~~---------------~~~~~~~--~~~----------- 195 (399)
T PRK05122 174 ---------WGG------------LAGLG---------LLIM---------------LLALLGL--LLA----------- 195 (399)
T ss_pred ---------ccc------------HHHHH---------HHHH---------------HHHHHHH--HHH-----------
Confidence 000 00000 0000 0000000 000
Q ss_pred cCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCC
Q 008514 268 LERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPH 347 (563)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 347 (563)
.+ .++ +++ ++ +++
T Consensus 196 ~~--~~~------~~~-~~-----------------~~~----------------------------------------- 208 (399)
T PRK05122 196 RP--RPA------VPP-VK-----------------GER----------------------------------------- 208 (399)
T ss_pred hc--CCC------CCC-CC-----------------ccc-----------------------------------------
Confidence 00 000 000 00 000
Q ss_pred cCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchhHHHHHHHHHHhhhhhhhhhhhhhhhhhcCC
Q 008514 348 RGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAY 427 (563)
Q Consensus 348 ~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~ 427 (563)
.+.++.+| ++|.....+.+....-.++...+....++.+.+......+++.++..+||+..|++.||+++++
T Consensus 209 ----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~-- 280 (399)
T PRK05122 209 ----LPFRRVLG--RVWPYGMGLALASIGFGTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLR-- 280 (399)
T ss_pred ----hhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHH--
Confidence 00111111 1222221111111000111223344455666644445678889999999999999999987632
Q ss_pred chhHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhh----chhhhhh
Q 008514 428 PRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL----ANPAGSI 502 (563)
Q Consensus 428 ~r~~~l~~~~~~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~----a~~vg~~ 502 (563)
.+.....+..++.+++.. .+...+++..++.|+++|..+......+.|.+..++.|+.+|+... +.++++.
T Consensus 281 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~ 356 (399)
T PRK05122 281 ----VAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGP 356 (399)
T ss_pred ----HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233334444433333 2333455677888999999888888888899999999999997653 4555666
Q ss_pred hccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008514 503 FTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTT 547 (563)
Q Consensus 503 l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r 547 (563)
+.+...+ ...|+.+|.+.++++++++++...+.+|++
T Consensus 357 ~~g~l~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (399)
T PRK05122 357 LAGLVAS--------WFGYPSIFLAAALAALLGLALTWLLYRRAP 393 (399)
T ss_pred HHHHHHH--------HcCHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 5553320 013899999998888888777665544333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-15 Score=166.78 Aligned_cols=375 Identities=14% Similarity=0.144 Sum_probs=217.8
Q ss_pred hhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Q 008514 45 SLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNG 123 (563)
Q Consensus 45 ~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g 123 (563)
++|+|.++...+..+..++..+ ++++|.+.||+|+|.++.++.+...++..+....... +++.+.+..++.|.+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~~~G~~ 144 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGG-----GIALVVFCRVIQGLA 144 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHc-----CchHHHHHHHHHHHh
Confidence 6899999999987777777755 7899999999999999999988777776554333221 345566667777889
Q ss_pred cchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhheeecccCCCC
Q 008514 124 ETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHR 202 (563)
Q Consensus 124 ~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~ 202 (563)
.+..+.+......+||| ++||++.|+..++..++..+-..+...+.+. . .+.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~---------------------~----~gw~- 198 (465)
T TIGR00894 145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCES---------------------W----GGWP- 198 (465)
T ss_pred cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------------c----CCCC-
Confidence 99888899999999998 5799999999999888887765554311000 0 0000
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhccccCCCChhhhhhcCCC
Q 008514 203 QVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKP 282 (563)
Q Consensus 203 ~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 282 (563)
..| ++.+ ...++..++... +.++ +|+
T Consensus 199 -------~~f------------~i~~----------------~~~~~~~~~~~~---------~~~~--~p~-------- 224 (465)
T TIGR00894 199 -------MIF------------YVFG----------------IVGCAWSLLWFV---------FPAD--DPS-------- 224 (465)
T ss_pred -------eeh------------hhhh----------------HHHHHHHHHHHH---------HhcC--Ccc--------
Confidence 001 0000 011111110000 0000 110
Q ss_pred CCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCCcCCCCcHHHHhhcHH
Q 008514 283 ENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKAD 362 (563)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~t~~~~l~s~~ 362 (563)
++... +++ ++. . .++ . .+.+++..+ ....+++.++++.
T Consensus 225 --~~~~~---~~~---------------------~~~-~---i~~-----~----~~~~~~~~~---~~~~~~~~~~~~~ 262 (465)
T TIGR00894 225 --IHPCI---SKF---------------------EKK-Y---INS-----S----LQGQKGSTR---QSLPIKAIPKSLP 262 (465)
T ss_pred --cCCCC---CHH---------------------HHH-H---HHh-----h----cccccCCCC---CCCCHHHHhcCHH
Confidence 00000 000 000 0 000 0 000000001 1235789999999
Q ss_pred HHHHHHHHHhhccchheeeechHHHHHH-hCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHH--
Q 008514 363 FWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ-- 437 (563)
Q Consensus 363 Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~-- 437 (563)
+|.+++..++.......+...+....++ +|.+..+. ..++..++..+++++.|+++||+.+|+...|.....+..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 342 (465)
T TIGR00894 263 VWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGI 342 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 9999998887766665566666667654 68776543 567889999999999999999998766554433211111
Q ss_pred HH--HHHHHHHHhh-cCc-hhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhccCCC---CC
Q 008514 438 FV--MAIGHIFLGM-GWP-GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMPR---VD 510 (563)
Q Consensus 438 ~~--~~~~~lll~~-~~~-~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~~~~---~~ 510 (563)
.. ..+..+.... ... ....+...+.+...+......-....|..+ ++.|...|+..+...+|+.+.+... .+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~ 421 (465)
T TIGR00894 343 GGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILS 421 (465)
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeC
Confidence 11 1111111111 111 122223333344444444444344456655 6889999988766666655555221 11
Q ss_pred CCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 008514 511 EPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYS 551 (563)
Q Consensus 511 ~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r~~~~ 551 (563)
. ++.+-|+..|.+.+++++++.++.......++.-+.
T Consensus 422 ~----~~~~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~w~ 458 (465)
T TIGR00894 422 Q----DSKNVWLIVFLIMAFVNILCVIFYLIFGSAERQDWA 458 (465)
T ss_pred C----CCchHHHHHHHHHHHHHHHHHHHeeeeecceecCCC
Confidence 1 122459999999999999988777765555544444
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=165.35 Aligned_cols=378 Identities=15% Similarity=0.190 Sum_probs=218.1
Q ss_pred HhcCcccccccccHHHHh-hhCCChhhHHHH-HHHHhhhhhhhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 008514 27 SCAGIGYLFGSISPVIKS-SLNYNQKQIARL-GVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGR 104 (563)
Q Consensus 27 l~~Gt~Y~fS~ys~~Lk~-~lg~sq~~l~~i-~~a~~vG~~~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~ 104 (563)
++--.-+.||.-.+++++ .+|+|.+|+.++ ++....+...-++.|.+.||+|+|.+..++.++..++..+...+....
T Consensus 45 ~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~ 124 (462)
T PRK15034 45 LAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNP 124 (462)
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHccc
Confidence 333444667777778776 799999999996 545555555569999999999999999999998877776654443332
Q ss_pred CCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHH
Q 008514 105 APVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVG 183 (563)
Q Consensus 105 i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~ 183 (563)
. ++++.+.+..++.|.+ +..+.+++....+|||+ +||++.|+..+.-.+++.+...+.
T Consensus 125 ~--~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~------------------ 183 (462)
T PRK15034 125 N--TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVA------------------ 183 (462)
T ss_pred C--CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHH------------------
Confidence 2 4688887777777776 55778899999999995 599999999755445555443222
Q ss_pred HHHHHH--hhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccc
Q 008514 184 PAMVVI--ALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIP 261 (563)
Q Consensus 184 ~~~v~l--~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~ 261 (563)
|.++.+ ...+--+.+... . .+...... ...+|. ...++..++..
T Consensus 184 p~~i~~~l~~~~G~~~~~~~---~-g~~~~~~~------~~~~~~------------------~~~iv~~i~~~------ 229 (462)
T PRK15034 184 PLVIFVPVFAFLGVNGVPQA---D-GSVMSLAN------AAWIWV------------------PLLAIATIAAW------ 229 (462)
T ss_pred HHHHHHHHHHHhcccccccc---c-cchHHHHH------HHHHHH------------------HHHHHHHHHHH------
Confidence 111111 111100000000 0 00000000 000000 00111110000
Q ss_pred hhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 008514 262 IILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVK 341 (563)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (563)
+..+ +++ +++ .
T Consensus 230 ----~~~~-----------~~~--------------------~~~----~------------------------------ 240 (462)
T PRK15034 230 ----SGMN-----------DIA--------------------SSR----A------------------------------ 240 (462)
T ss_pred ----HhCC-----------Ccc--------------------ccc----c------------------------------
Confidence 0000 000 000 0
Q ss_pred ccCCCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhh
Q 008514 342 RRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSE 419 (563)
Q Consensus 342 ~~~~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD 419 (563)
. -...++.+|+++-|++-+.+++.-|+=..+.+-+....++ .++.... ...+..+...++|+++|+++|
T Consensus 241 ----~----~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LAD 311 (462)
T PRK15034 241 ----S----IADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISD 311 (462)
T ss_pred ----C----HHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 0 0012468899999999998888766555555555555555 3333222 344567889999999999999
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHH-H-HHhhcC----chh-----HHHHHHHHHhhhhhhcchhHHHHHH--hhcc---
Q 008514 420 IIVRDYAYPRPVAMAVAQFVMAIGH-I-FLGMGW----PGA-----MYVGTLLIGLGYGAHWAIVPAAASE--LFGL--- 483 (563)
Q Consensus 420 ~~~~~~~~~r~~~l~~~~~~~~~~~-l-ll~~~~----~~~-----l~~~~~l~Gl~~G~~~~l~p~i~se--~FG~--- 483 (563)
|+++++. .... ..++.+.. . .+.... +-. ++...+..|++.|+.|-+.|.+-.+ --..
T Consensus 312 RiG~~~v----l~~~--~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~ 385 (462)
T PRK15034 312 KFGGVRV----TLIN--FIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMK 385 (462)
T ss_pred hcCchHH----HHHH--HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhccccc
Confidence 9988432 2222 22122221 1 111111 111 2223344588888999888877653 1111
Q ss_pred ------------CcchhhhhhhhhchhhhhhhccCCC-CCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008514 484 ------------KKFGALYNFLTLANPAGSIFTSMPR-VDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTT 547 (563)
Q Consensus 484 ------------k~fg~nyg~~~~a~~vg~~l~~~~~-~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r 547 (563)
|+-|..=|++....++|+++.+... .. . +-++.|..+|++..+..+++++++.+.+.|++
T Consensus 386 ~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~--~--~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r~~ 458 (462)
T PRK15034 386 GGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMS--L--NMTGSPVGAMKVFLIFYIVCVLLTWLVYGRRK 458 (462)
T ss_pred ccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHH--H--HHcCCcHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 2566677777777777777777331 00 0 11355999999999999999999888777754
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-15 Score=158.05 Aligned_cols=377 Identities=14% Similarity=0.099 Sum_probs=218.2
Q ss_pred cchHHHHHHHHHHHHhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhh-hhhhcchhhhccchhHHHHHHHHHHHH
Q 008514 13 NNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLVGALQNF 91 (563)
Q Consensus 13 ~~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~-~~gi~~G~l~D~~gp~~~~~iG~~~~~ 91 (563)
++.+...++....+...+..|. |-+++.+++|+|.+|..++.....++. ...++.|.+.||+|+|.++..+.+...
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~ 89 (402)
T TIGR00897 13 LNLLWGYIGVVVFMTGDGLEQG---WLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWC 89 (402)
T ss_pred chhhHHHHHHHHHHHhhhhHHH---hHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 4445566666666777676664 335566789999999999766666665 458999999999999999999988877
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHHhcC
Q 008514 92 IGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHA 170 (563)
Q Consensus 92 ~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~ 170 (563)
++..+. ...+.. .+++|.+....++.|.|.+....+......+++| ++||++.|+.-+..+++..++.++.....-
T Consensus 90 ~~~~~~--~~~~~~-~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~ 166 (402)
T TIGR00897 90 VGHAAF--IVFGLG-HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI 166 (402)
T ss_pred HHHHHH--HHHhcc-CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 765432 111221 1245666555666677777655556666778875 679999999988888876444433321110
Q ss_pred CChhHHHHHHHHHHHHHHHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHH
Q 008514 171 PDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVIL 250 (563)
Q Consensus 171 ~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 250 (563)
+ ..+. . ... +... .+..+.
T Consensus 167 ~-------------------------~~g~---------~---~~~----~~~~--------------------~~~~~~ 185 (402)
T TIGR00897 167 P-------------------------AFGE---------M---NTL----WSAL--------------------AFVLTG 185 (402)
T ss_pred c-------------------------ccch---------H---HHH----HHHH--------------------HHHHHH
Confidence 0 0000 0 000 0000 000000
Q ss_pred HHHhhcccccchhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHH
Q 008514 251 FVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLF 330 (563)
Q Consensus 251 ~~ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (563)
+++... +.+++++ |++.+ ++++ . .
T Consensus 186 ~~~~~~---------~~~~~~~---------~~~~~----------------~~~~---~--------~----------- 209 (402)
T TIGR00897 186 GVIALF---------SNKDIFT---------PQHMQ----------------TREK---F--------S----------- 209 (402)
T ss_pred HHHHHh---------ccCCCCC---------ccccc----------------CCcc---h--------h-----------
Confidence 000000 0111000 00000 0000 0 0
Q ss_pred hhhhhhhhhhhccCCCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchhH--HHHHHHHHHh
Q 008514 331 HAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNF 408 (563)
Q Consensus 331 ~~~~~~~~~~~~~~~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~ 408 (563)
+ .....++.+|++.+|.+.+..++....-.........+.+++|+++.+. ..++..+++.
T Consensus 210 ----------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ 271 (402)
T TIGR00897 210 ----------E--------LGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNI 271 (402)
T ss_pred ----------h--------HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Confidence 0 0002346789999999887777655544455566667778888886643 5677889999
Q ss_pred hhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh---cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCc
Q 008514 409 LGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM---GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKK 485 (563)
Q Consensus 409 ~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~---~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~ 485 (563)
+|++..|+++||++||+.. + ....+...+..+....... .....+++...+.|++.++.... ...++|. .+++
T Consensus 272 ig~~~~g~l~dr~~~~~~~-~-~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~-~~~~ 347 (402)
T TIGR00897 272 VFNVIFGIVGDKLGWMNTV-R-WFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTL-APKH 347 (402)
T ss_pred HHHHHHHHHHHhhcchhHH-H-HHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhh-Ccch
Confidence 9999999999999764321 0 1111111111111111111 12223556777889888876543 4566775 5579
Q ss_pred chhhhhhhhh----chhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHH
Q 008514 486 FGALYNFLTL----ANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 542 (563)
Q Consensus 486 fg~nyg~~~~----a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l 542 (563)
.|+.+|+... +..+||.+.+...+ .. .|...|.+.+++.+++.++..++
T Consensus 348 ~g~~~g~~~~~~~lg~~~gp~i~g~l~~-------~~-g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 348 KGAAMSVLNLSAGLSAFLAPAIAVLFIG-------FF-GAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hc-chHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998764 44556665553320 11 27788888888877777766654
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.1e-15 Score=155.72 Aligned_cols=348 Identities=15% Similarity=0.080 Sum_probs=199.0
Q ss_pred cccccccHHHHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHH-HhcCCCCchH
Q 008514 33 YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLI-VTGRAPVLPL 110 (563)
Q Consensus 33 Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~-~~g~i~~~s~ 110 (563)
...++....+++++|+|.+|+..+..+..++.. ..++.|.+.||+|+|.++.+|.+...++.....+. ........++
T Consensus 33 ~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (392)
T PRK12382 33 LPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKF 112 (392)
T ss_pred HHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHH
Confidence 344555557889999999999998666666664 48999999999999999998877655543321111 1111112356
Q ss_pred HHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q 008514 111 WAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVI 189 (563)
Q Consensus 111 ~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~l 189 (563)
+.+.+.-++.|.|.+...++......+++| ++||++.|+.-....++..+-..+.. .
T Consensus 113 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~----------------------~ 170 (392)
T PRK12382 113 ALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGL----------------------L 170 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHH----------------------H
Confidence 666667778888888877887777788996 67999999865554444433322221 0
Q ss_pred hhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhccccC
Q 008514 190 ALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLE 269 (563)
Q Consensus 190 ~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~~~ 269 (563)
+.. ..+ +.. .. ....+..++.+. +.++
T Consensus 171 l~~----~~g------------~~~---------~~-------------------~~~~~~~~~~~~---------~~~~ 197 (392)
T PRK12382 171 LHS----HFG------------FAA---------LA-------------------LTTMVLPLLAWA---------FNGT 197 (392)
T ss_pred HHh----ccC------------hHH---------HH-------------------HHHHHHHHHHHH---------HHHh
Confidence 000 000 000 00 000000000000 0000
Q ss_pred CCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCCcC
Q 008514 270 RTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRG 349 (563)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 349 (563)
.++ + +. + ++++ +
T Consensus 198 ~~~---------~--~~-~--------------~~~~---------------------------------------~--- 209 (392)
T PRK12382 198 VRK---------V--PA-H--------------AGER---------------------------------------P--- 209 (392)
T ss_pred ccC---------C--CC-C--------------cccC---------------------------------------c---
Confidence 000 0 00 0 0000 0
Q ss_pred CCCcHHHHhhcHHHHHHHHHHHhhccchhe-eeechHHHHHHhCCCchhHHHHHHHHHHhhhhhhhhhhhhhhhhhcCCc
Q 008514 350 EDFTLTQALIKADFWLIFFSLLLGSGSGLT-VIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYP 428 (563)
Q Consensus 350 ~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~-~i~n~~~i~~~~g~~~~~~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~ 428 (563)
+.++.+| .+|...+..++. +.+.. +.....+..++.+.+......+..++++.++++..|.++||+++++..
T Consensus 210 ---~~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~- 282 (392)
T PRK12382 210 ---SLWSVVG--LIWKPGLGLALQ-GVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVA- 282 (392)
T ss_pred ---hHHHHHH--HHHHhHHHHHHH-HHHHhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeh-
Confidence 0011111 122211111111 11111 122334455666665544566778889999999999999999875432
Q ss_pred hhHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh----hchhhhhhh
Q 008514 429 RPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIF 503 (563)
Q Consensus 429 r~~~l~~~~~~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~----~a~~vg~~l 503 (563)
.....+..++.+++.. .....+++..++.|+++|..+......+.|.++.|+.|+.+|+.. ++..+||.+
T Consensus 283 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~ 357 (392)
T PRK12382 283 -----IVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPL 357 (392)
T ss_pred -----HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333344333332 223345667788899999988888899999999999999999865 456667766
Q ss_pred ccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008514 504 TSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 543 (563)
Q Consensus 504 ~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~ 543 (563)
.+...+ ...|+..|.+.+.+.++++++.+...
T Consensus 358 ~g~l~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 358 AGMLAT--------SFGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred HHHHHH--------HhCchHHHHHHHHHHHHHHHHHHhhc
Confidence 664320 01289999999888888777665443
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-15 Score=160.58 Aligned_cols=126 Identities=14% Similarity=0.041 Sum_probs=94.8
Q ss_pred ccccHHHHhhhCCC--------hhhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008514 36 GSISPVIKSSLNYN--------QKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAP 106 (563)
Q Consensus 36 S~ys~~Lk~~lg~s--------q~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~ 106 (563)
+..-+.++.+++++ +.|.+.+.....++.. .+++.|.+.||+|+|.++.++.++..+|..+.... ..
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~--~~-- 123 (481)
T TIGR00879 48 GGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLA--AF-- 123 (481)
T ss_pred hhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHh--cc--
Confidence 33345566666666 8999998666666664 48899999999999999999999887777654322 21
Q ss_pred CchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHH
Q 008514 107 VLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVY 165 (563)
Q Consensus 107 ~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~ 165 (563)
..++|.+.+.-++.|.|.+..+........+++| ++||++.|+.-.+..++..+-..+.
T Consensus 124 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 124 ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 1235666777788888888888888888899997 5699999999888888876665444
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.4e-15 Score=155.59 Aligned_cols=320 Identities=15% Similarity=0.117 Sum_probs=197.7
Q ss_pred cccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 008514 33 YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLW 111 (563)
Q Consensus 33 Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~ 111 (563)
.+++..-|++++++|+|.+|..++.....++..+ +++.|++.||+|+|.++.+|.+...++.... ..+ +.+
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~------~~~--~~~ 88 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR------SAP--GTA 88 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH------Hhc--cHH
Confidence 4677888999999999999999987777777754 8899999999999999999988766666432 112 345
Q ss_pred HHHHHHHHhccCcchhhhhHHHHHHHhcCCCCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhh
Q 008514 112 AMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIAL 191 (563)
Q Consensus 112 ~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~l~~ 191 (563)
.+.+..++.|.|.+...++......++||++||++.|+.....+++..+-..+....-+.
T Consensus 89 ~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~-------------------- 148 (355)
T TIGR00896 89 LLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPLAQH-------------------- 148 (355)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 555566667777776666666667788999999999999888888776654333211000
Q ss_pred heeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhccccCCC
Q 008514 192 MFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERT 271 (563)
Q Consensus 192 ~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~~~~~ 271 (563)
.. ...+..+ . ..+...++.... +..+.+
T Consensus 149 ------~~----------~~w~~~f--------~-------------------~~~~~~~~~~~~---------~~~~~~ 176 (355)
T TIGR00896 149 ------SG----------GHWQQAL--------A-------------------WWALPALLALLA---------WIPQVR 176 (355)
T ss_pred ------hh----------hhHHHHH--------H-------------------HHHHHHHHHHHH---------Hhhhhc
Confidence 00 0000000 0 000000000000 000000
Q ss_pred ChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCCcCCC
Q 008514 272 DPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGED 351 (563)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 351 (563)
+ + ++ +++ + + ++
T Consensus 177 ~---------~--~~-----------------~~~----------------------------------~----~---~~ 187 (355)
T TIGR00896 177 R---------R--VA-----------------ANQ----------------------------------T----T---TR 187 (355)
T ss_pred c---------c--cC-----------------CCC----------------------------------C----C---CC
Confidence 0 0 00 000 0 0 01
Q ss_pred CcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCch
Q 008514 352 FTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 429 (563)
Q Consensus 352 ~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r 429 (563)
.+.++++|++.+|.+.+.+++....-..+.+.+..+.++.|.++.. ...+++.+.+.+||+.+|+++||+++++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~--- 264 (355)
T TIGR00896 188 LTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRG--- 264 (355)
T ss_pred CCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchH---
Confidence 1234678899999887776665555555566777788888887654 37889999999999999999999854221
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcc-Ccchhhhhhhh----hchhhhhhhc
Q 008514 430 PVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGL-KKFGALYNFLT----LANPAGSIFT 504 (563)
Q Consensus 430 ~~~l~~~~~~~~~~~lll~~~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~-k~fg~nyg~~~----~a~~vg~~l~ 504 (563)
.+.....+.+++.+.+............++.|+++|..+.+..+.+.+.+.. ++.|+.+|+.. ++..+||.+.
T Consensus 265 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~ 342 (355)
T TIGR00896 265 --IVAVLAVLQLVGLCGLLFAPMHGLWAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFV 342 (355)
T ss_pred --HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333334443333322211222346788999999998888877766654 45677777654 3446677665
Q ss_pred cC
Q 008514 505 SM 506 (563)
Q Consensus 505 ~~ 506 (563)
+.
T Consensus 343 G~ 344 (355)
T TIGR00896 343 GV 344 (355)
T ss_pred HH
Confidence 53
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-14 Score=152.93 Aligned_cols=345 Identities=14% Similarity=0.120 Sum_probs=202.8
Q ss_pred cccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 008514 33 YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLW 111 (563)
Q Consensus 33 Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~ 111 (563)
+..+..-|.+++++|+|.+|.+.+.....++..+ .++.|.+.||+|+|.++.++.+...++..+.. . . +++|
T Consensus 20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~--~---~--~~~~ 92 (382)
T PRK10091 20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFT--L---S--SSYL 92 (382)
T ss_pred HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH--H---h--CcHH
Confidence 3455577899999999999999987777777755 68899999999999999999988777765432 2 2 2467
Q ss_pred HHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHh
Q 008514 112 AMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIA 190 (563)
Q Consensus 112 ~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~l~ 190 (563)
.+...-++.|.+.+...........+++|+ +|+.+.|+...+..++..+-..+...+.+.
T Consensus 93 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~------------------- 153 (382)
T PRK10091 93 MLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE------------------- 153 (382)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh-------------------
Confidence 777777777887776665555666788976 589999988777777766554333211000
Q ss_pred hheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhccccCC
Q 008514 191 LMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLER 270 (563)
Q Consensus 191 ~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~~~~ 270 (563)
...+..+ . ..+++.++.... . ..+.
T Consensus 154 -------------------~gwr~~f---------~------------------~~~~~~~~~~~~-----~-~~~l--- 178 (382)
T PRK10091 154 -------------------FSWRYTF---------L------------------LIAVFNIAVLAS-----I-YFWV--- 178 (382)
T ss_pred -------------------ccHHHHH---------H------------------HHHHHHHHHHHH-----H-HHhC---
Confidence 0000000 0 001100000000 0 0000
Q ss_pred CChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCCcCC
Q 008514 271 TDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGE 350 (563)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 350 (563)
+++++++ +.+ . +
T Consensus 179 ---------p~~~~~~-----------------~~~------------~---------------------~--------- 190 (382)
T PRK10091 179 ---------PDIRDEA-----------------KGG------------L---------------------R--------- 190 (382)
T ss_pred ---------CCCCccc-----------------ccC------------H---------------------H---------
Confidence 0000000 000 0 0
Q ss_pred CCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCC
Q 008514 351 DFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAY 427 (563)
Q Consensus 351 ~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~ 427 (563)
...+.+|++++|.++...+++........+...+..++ .|.++.. ...++.++++.+||++.|+++||+++++.
T Consensus 191 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~- 267 (382)
T PRK10091 191 --EQFHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRI- 267 (382)
T ss_pred --HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhH-
Confidence 01235678889988777666543333334445555654 6877654 37789999999999999999999876332
Q ss_pred chhHHHHHHHHHHHHHHHHHh-hc-CchhHHHHHHHHHhhhhhhcc-hhHHHHHHhhccCcchhhhh--hhhhchhhhhh
Q 008514 428 PRPVAMAVAQFVMAIGHIFLG-MG-WPGAMYVGTLLIGLGYGAHWA-IVPAAASELFGLKKFGALYN--FLTLANPAGSI 502 (563)
Q Consensus 428 ~r~~~l~~~~~~~~~~~lll~-~~-~~~~l~~~~~l~Gl~~G~~~~-l~p~i~se~FG~k~fg~nyg--~~~~a~~vg~~ 502 (563)
+.....+..++.+++. .. ......+...+.++++++... .....+.+.++.|+.|...+ ...++..+||.
T Consensus 268 -----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gp~ 342 (382)
T PRK10091 268 -----AAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAY 342 (382)
T ss_pred -----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 2333344444543332 22 222233344455555443332 23345667777777776422 23467888888
Q ss_pred hccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 008514 503 FTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 541 (563)
Q Consensus 503 l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~ 541 (563)
+.+... +..+.|+..+.+.+.++++++.....
T Consensus 343 ~~G~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 343 CGGMML-------TLGLAYNYVALPAALLSFAAMSSLLL 374 (382)
T ss_pred HhHHHH-------HcccCcchHHHHHHHHHHHHHHHHHH
Confidence 776543 11245999999887776665444443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-14 Score=151.59 Aligned_cols=126 Identities=18% Similarity=0.233 Sum_probs=94.4
Q ss_pred cCcccccccccHH-HHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008514 29 AGIGYLFGSISPV-IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAP 106 (563)
Q Consensus 29 ~Gt~Y~fS~ys~~-Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~ 106 (563)
...-|.++.+.|+ +++++|+|..|.+++.....++..+ .++.|.+.||+|+|.++.++.++..++..+.... .
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~--~--- 88 (366)
T TIGR00886 14 FSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA--V--- 88 (366)
T ss_pred HHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--h---
Confidence 4445788999996 9999999999999987777777654 7899999999999999999999888887665432 1
Q ss_pred CchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHH
Q 008514 107 VLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAIL 161 (563)
Q Consensus 107 ~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~ 161 (563)
. ++|.+....++.|.+.+. +..+.....+++| ++||.+.++..+...++..+-
T Consensus 89 ~-~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 142 (366)
T TIGR00886 89 Q-SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVA 142 (366)
T ss_pred h-hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHH
Confidence 0 466665555555565443 4566777889997 579999999875555554443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-15 Score=165.53 Aligned_cols=380 Identities=15% Similarity=0.134 Sum_probs=217.0
Q ss_pred CcccccccccHHHHhhhCCC---hhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008514 30 GIGYLFGSISPVIKSSLNYN---QKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRA 105 (563)
Q Consensus 30 Gt~Y~fS~ys~~Lk~~lg~s---q~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i 105 (563)
|-.|.++.+.+++++++|++ ..+..++.....+|..+ .++.|.+.||+|+|.++.++.+...++..+.. ..
T Consensus 103 ~~~~~~~~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~-----~~ 177 (505)
T TIGR00898 103 GWEYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTA-----FS 177 (505)
T ss_pred CcEecCCcccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH-----Hc
Confidence 45577778999999999999 88888888888888866 67899999999999999998887766665432 12
Q ss_pred CCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 008514 106 PVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGP 184 (563)
Q Consensus 106 ~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~ 184 (563)
+++|.+.++-++.|.+.+..+........+++|. +||.+.++...+++++..+...+.. +.. + ...++.+...+
T Consensus 178 --~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~-~~~-~-wr~~~~~~~i~ 252 (505)
T TIGR00898 178 --PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAY-FIP-D-WRWLQLAVSLP 252 (505)
T ss_pred --ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHH-Hhh-H-HHHHHHHHHHH
Confidence 2577777777788899998888889999999985 5999999987777777655443321 111 1 11111111111
Q ss_pred HHHHHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhh
Q 008514 185 AMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIIL 264 (563)
Q Consensus 185 ~~v~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~ 264 (563)
.++.++..++
T Consensus 253 ~~~~~~~~~~---------------------------------------------------------------------- 262 (505)
T TIGR00898 253 TFLFFLLSWF---------------------------------------------------------------------- 262 (505)
T ss_pred HHHHHHHHHh----------------------------------------------------------------------
Confidence 1111111111
Q ss_pred ccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccC
Q 008514 265 SFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRR 344 (563)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (563)
++++++. +..+. +.+ +..+... ...+.+... .+.+.. . ...+.+. +
T Consensus 263 --~~esp~~----l~~~~-~~~------~a~~~l~-~~~~~~~~~----~~~~~~-~----------~~~~~~~--~--- 308 (505)
T TIGR00898 263 --VPESPRW----LISQG-RIE------EALKILQ-RIAKINGKK----LPAEVL-S----------LSLEKDL--S--- 308 (505)
T ss_pred --cCCChHH----HHHCC-CHH------HHHHHHH-HHHHHcCCC----CCHHHH-h----------hhhhhhh--h---
Confidence 1110000 00000 000 0000000 000000000 000000 0 0000000 0
Q ss_pred CCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchhHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 008514 345 GPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRD 424 (563)
Q Consensus 345 ~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~~~Vsl~si~n~~GRl~~G~lsD~~~~~ 424 (563)
++ ....+.++++|++.+|...+...+...........+....+.++.+. .....+.++....|+++.++++||++||
T Consensus 309 -~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~l~dr~grr 385 (505)
T TIGR00898 309 -SS-KKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNI-YLDLFISGLVELPAKLITLLLIDRLGRR 385 (505)
T ss_pred -hc-cCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCh-HHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 00 01346789999999998877765544332222222222222333332 1234466778889999999999999874
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhc-Cc--hhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh----hch
Q 008514 425 YAYPRPVAMAVAQFVMAIGHIFLGMG-WP--GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LAN 497 (563)
Q Consensus 425 ~~~~r~~~l~~~~~~~~~~~lll~~~-~~--~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~----~a~ 497 (563)
+. +.+...+.+++.+++... .. ........+.+++.++.+.+...+++|.|+.++-++-.|+.. ++.
T Consensus 386 ~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~ 459 (505)
T TIGR00898 386 YT------MAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGS 459 (505)
T ss_pred HH------HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHH
Confidence 32 233334444444433322 22 234445566678888888999999999999988888888765 455
Q ss_pred hhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHH
Q 008514 498 PAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 542 (563)
Q Consensus 498 ~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l 542 (563)
.++|++.+... .-+..++.+.+++++++.++.+++
T Consensus 460 ~i~p~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l 494 (505)
T TIGR00898 460 IISPFLVYLGE----------KWLFLPLVLFGGLALLAGILTLFL 494 (505)
T ss_pred HHHhHHHHHHH----------HHHhhHHHHHHHHHHHHHHHHHcC
Confidence 56665544111 114567777777777776666544
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-14 Score=151.56 Aligned_cols=358 Identities=18% Similarity=0.221 Sum_probs=231.6
Q ss_pred cccccccHHHHhhhCCChhhHHHH-HHHHhhhhhhhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 008514 33 YLFGSISPVIKSSLNYNQKQIARL-GVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLW 111 (563)
Q Consensus 33 Y~fS~ys~~Lk~~lg~sq~~l~~i-~~a~~vG~~~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~ 111 (563)
+.||.-.+++++.+|+|..|..++ ++....|..+=++-|.+.||+|||.+..++.+...+=..+ +.+...- +++|
T Consensus 31 ~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~--~~~a~~~--~~~~ 106 (417)
T COG2223 31 TLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLG--LAFAVTY--PSTW 106 (417)
T ss_pred HHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHH--HHHHccC--CchH
Confidence 567777789999999999999996 8888889888999999999999999988888876555544 3343432 3578
Q ss_pred HHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHh
Q 008514 112 AMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIA 190 (563)
Q Consensus 112 ~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~l~ 190 (563)
++.+..++.|.+.+- +...+...-+|||+ |+|+|.||-- .|=.+.-.+|+.. |.++...
T Consensus 107 ~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~qG~AlGI~g--~GN~G~av~q~~~-----------------P~v~~~~ 166 (417)
T COG2223 107 QLLVIGLLLGLAGAS-FAVGMPNASFFFPKEKQGLALGIAG--AGNLGVAVAQLVA-----------------PLVAVAF 166 (417)
T ss_pred HHHHHHHHHhcccce-ehcccccccccCChhhhhHHHHHhc--cccccHHHHHHHH-----------------HHHHHHH
Confidence 888787777775553 35778899999985 6899999976 3433333333331 2222221
Q ss_pred hheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhccccCC
Q 008514 191 LMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLER 270 (563)
Q Consensus 191 ~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~~~~ 270 (563)
+.-.-|- ...+|+ ...++..++. +..-+
T Consensus 167 g~~~w~~-----------------------~~~i~~------------------~~l~v~~v~~-----------~~~~~ 194 (417)
T COG2223 167 GFLAWRN-----------------------VAGIYV------------------VALAIAAVLA-----------WLGMN 194 (417)
T ss_pred hhHHHHH-----------------------HHHHHH------------------HHHHHHHHHH-----------HHHhC
Confidence 1100000 000110 0001100000 00000
Q ss_pred CChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCCcCC
Q 008514 271 TDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGE 350 (563)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 350 (563)
+.| +.+++ ..+. .
T Consensus 195 d~p------------------------------~~r~~-----------------------------------~~~~--~ 207 (417)
T COG2223 195 DVP------------------------------EHRAS-----------------------------------VKPQ--L 207 (417)
T ss_pred CCh------------------------------hhhcc-----------------------------------cccc--c
Confidence 000 00000 0000 0
Q ss_pred CCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCC
Q 008514 351 DFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAY 427 (563)
Q Consensus 351 ~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~ 427 (563)
+...+...+++|-|.+.+.++..-|+=..+.+-+++..++ .|.++.+ ....++.+-+.+-|..+|++|||++.++.
T Consensus 208 ~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv- 286 (417)
T COG2223 208 PAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV- 286 (417)
T ss_pred hhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhH-
Confidence 1223456789999999999999888888888888888887 5777665 58899999999999999999999988443
Q ss_pred chhHHHHHHHHHHHHHHHHHhhc-------Cch-----hHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhh
Q 008514 428 PRPVAMAVAQFVMAIGHIFLGMG-------WPG-----AMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL 495 (563)
Q Consensus 428 ~r~~~l~~~~~~~~~~~lll~~~-------~~~-----~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~ 495 (563)
. ......++++..++... .+. .+.......|++.|+.|-+.|.+-.+ +.|..=|++..
T Consensus 287 ---~--~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-----~~G~v~G~vga 356 (417)
T COG2223 287 ---T--LAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-----ETGAVTGIVGA 356 (417)
T ss_pred ---H--HHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-----hhhHHHHHHHH
Confidence 2 22223333332222211 111 23335566788899999999887766 77777788887
Q ss_pred chhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008514 496 ANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTT 547 (563)
Q Consensus 496 a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r 547 (563)
..++|.+..+..... .-+.++.|+..|++....++++.++...++.|+|
T Consensus 357 ~G~lGGf~lp~~~g~---~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r~~ 405 (417)
T COG2223 357 IGGLGGFFLPLAFGV---SLDLTGSYTGAFMLLLAFYLVALVLTWALYARRR 405 (417)
T ss_pred hccccccchhHHHHH---HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888777643200 0023457999999999999999998888888876
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-13 Score=150.59 Aligned_cols=374 Identities=9% Similarity=0.049 Sum_probs=201.7
Q ss_pred hcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008514 28 CAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAP 106 (563)
Q Consensus 28 ~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~ 106 (563)
..-..+.++.+-|.+.+++|+|+.+...+.....++.. ..++.|.+.||+|+|.+.+++.+...+++.+.. + .
T Consensus 22 ~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~--~---~- 95 (471)
T PRK10504 22 QSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCA--L---S- 95 (471)
T ss_pred HHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH--H---h-
Confidence 33344566677888999999999999887666666654 477899999999999998888877777765422 1 2
Q ss_pred CchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 008514 107 VLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPA 185 (563)
Q Consensus 107 ~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~ 185 (563)
+++|.+.+..++.|.|.+...........+++|+ +||.+.|+.-....++..+-..+...+.+.......+.+.....
T Consensus 96 -~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~ 174 (471)
T PRK10504 96 -GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVG 174 (471)
T ss_pred -CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHH
Confidence 2456666666777788887777777778899985 58999999887777776655544433322211122222211111
Q ss_pred HHHHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhcc-ccCChhHHHHHHHHHHHHhhcccccchhh
Q 008514 186 MVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDL-VDLNHTVIIIFTVILFVLLFIPIVIPIIL 264 (563)
Q Consensus 186 ~v~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~i~~~ll~~~~~i~~~~ 264 (563)
.+..+.... ..|... .+.+++..........+...+.....++. .+..... ........+... . .
T Consensus 175 ~l~~~~~~~--~~~~~~----~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~--~ 240 (471)
T PRK10504 175 IIGAIATLM--LMPNYT----MQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLA--IAGLVAVGVVAL----L--L 240 (471)
T ss_pred HHHHHHHHH--hCCCcc----ccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHH--HHHHHHHHHHHH----H--H
Confidence 122221111 112111 11112211111100001000000000000 0000000 000000000000 0 0
Q ss_pred ccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccC
Q 008514 265 SFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRR 344 (563)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (563)
+. .+.++.
T Consensus 241 -~~----------------------------------------------------------------------~~~~~~- 248 (471)
T PRK10504 241 -YL----------------------------------------------------------------------LHARNN- 248 (471)
T ss_pred -HH----------------------------------------------------------------------HHHhcC-
Confidence 00 000000
Q ss_pred CCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHH-HHHH-hCCCchhH--HHHHHHHHHhhhhhhhhhhhhh
Q 008514 345 GPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQ-MSQS-LGYDNTHI--FVSMISIWNFLGRVGGGYFSEI 420 (563)
Q Consensus 345 ~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~-i~~~-~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~ 420 (563)
+ +..-..+.+|+++|+......++.... .....+..+ ..+. .|.++... ......+....+++++|.++||
T Consensus 249 -~---~~~~~~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r 323 (471)
T PRK10504 249 -N---RALFSLKLFRTRTFSLGLAGSFAGRIG-SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR 323 (471)
T ss_pred -C---CCccCHHHhcccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011112578999999987777665443 333444444 4443 67766543 5566777788889999999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHHhh-c--Cch-hHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh--
Q 008514 421 IVRDYAYPRPVAMAVAQFVMAIGHIFLGM-G--WPG-AMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT-- 494 (563)
Q Consensus 421 ~~~~~~~~r~~~l~~~~~~~~~~~lll~~-~--~~~-~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~-- 494 (563)
++||+. +....++.+++.+++.. . ... .+.+...+.|++.|..++....++.+.+..++.|..+++..
T Consensus 324 ~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 397 (471)
T PRK10504 324 FGYRRV------LVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMI 397 (471)
T ss_pred cCchHH------HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHH
Confidence 976332 22223333333333222 1 111 23345667788899888899999999999999999888755
Q ss_pred --hchhhhhhhcc
Q 008514 495 --LANPAGSIFTS 505 (563)
Q Consensus 495 --~a~~vg~~l~~ 505 (563)
++..+|+.+.+
T Consensus 398 ~~~g~~ig~~i~g 410 (471)
T PRK10504 398 MQLSMSIGVTIAG 410 (471)
T ss_pred HHHHHHHHHHHHH
Confidence 35555555544
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-14 Score=151.75 Aligned_cols=347 Identities=12% Similarity=0.065 Sum_probs=203.7
Q ss_pred cccccccHHHHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 008514 33 YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLW 111 (563)
Q Consensus 33 Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~ 111 (563)
+.|+..-|++++++|+|.+|+..+..+..+|.. ..++.|.+.||+|+|.++....+....+.. ..... ++++
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~---~~~~~----~~~~ 80 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG---RLLDP----FNYE 80 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH---HHHHh----ccHH
Confidence 467788899999999999999998777777664 478999999999998875544333222211 11111 2467
Q ss_pred HHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHh
Q 008514 112 AMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIA 190 (563)
Q Consensus 112 ~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~l~ 190 (563)
.+.+.-++.|.|.+. +..+.....+||| ++||++.|+...+..+|+.+-..+....
T Consensus 81 ~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l---------------------- 137 (368)
T TIGR00903 81 WLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKI---------------------- 137 (368)
T ss_pred HHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 777777777888875 4555556688897 5699999999999999887664333211
Q ss_pred hheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhccccCC
Q 008514 191 LMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLER 270 (563)
Q Consensus 191 ~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~~~~ 270 (563)
....+. + ..+.+ .+ ....+..++... +.+++
T Consensus 138 ----~~~~gW---------r---~~f~~--------~~----------------~l~~~~~~~~~~---------~lp~~ 168 (368)
T TIGR00903 138 ----YTAGGL---------Q---LLIIP--------IA----------------AVAAAGIILVLA---------ALPAL 168 (368)
T ss_pred ----HHccch---------H---HHHHH--------HH----------------HHHHHHHHHHHH---------HcCCC
Confidence 000010 1 11100 00 011111100000 11110
Q ss_pred CChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCCcCC
Q 008514 271 TDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGE 350 (563)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 350 (563)
| +++ + +.. + .++ .
T Consensus 169 -----------p-~~~-~---------------~~~----~---~~~-----------------------~--------- 181 (368)
T TIGR00903 169 -----------P-FQA-A---------------EGF----G---FKD-----------------------A--------- 181 (368)
T ss_pred -----------C-CCC-C---------------CCc----c---hHH-----------------------H---------
Confidence 0 000 0 000 0 000 0
Q ss_pred CCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchhHHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchh
Q 008514 351 DFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 430 (563)
Q Consensus 351 ~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 430 (563)
...+++.+|++++|.+++..++....-..+.+-+.++.++.|++... -....+....|-+..|+++||..|+.+ |.
T Consensus 182 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~--~~~~~l~~~~g~~g~~~~~d~~~r~~~--r~ 257 (368)
T TIGR00903 182 VKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDIA--GDAVALAILAGLIGVAVIPDRVARAGL--RS 257 (368)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChHH--HHHHHHHHHHHHHHHHHhhHHhhhhhh--HH
Confidence 00246789999999999999888777767777788899888877542 223444444555667999999976432 22
Q ss_pred HHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhh----chhhhhhhcc
Q 008514 431 VAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL----ANPAGSIFTS 505 (563)
Q Consensus 431 ~~l~~~~~~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~----a~~vg~~l~~ 505 (563)
.......++.++..+++.. .++........+.|+..+..++.+..+++|.|..++-|+-.|+... +..++|.+.+
T Consensus 258 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~ 337 (368)
T TIGR00903 258 IYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAM 337 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHH
Confidence 2222222223333333332 2232334444556677777777788999999999898888887653 4444444433
Q ss_pred CCCCCCCCccccCcccHHHHHHHHHHHHHHHHHH
Q 008514 506 MPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILS 539 (563)
Q Consensus 506 ~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~ 539 (563)
... ..++..|.+.+..++++.+..
T Consensus 338 ~~~----------~~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 338 LFI----------SSAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred HHh----------cCHHHHHHHHHHHHHHHHHHH
Confidence 211 126777877777777766664
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.8e-14 Score=147.48 Aligned_cols=145 Identities=14% Similarity=0.060 Sum_probs=106.3
Q ss_pred cchHHHHHHHHHHHHhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHH
Q 008514 13 NNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNF 91 (563)
Q Consensus 13 ~~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~ 91 (563)
++|+..+++.. ..+..-....+...-|.+++++|+|.+|...+.....++..+ .++.|.+.||+|+|.++.++.+...
T Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~ 81 (385)
T TIGR00710 3 AKAFALLLGCL-SILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFA 81 (385)
T ss_pred chHHHHHHHHH-HHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHH
Confidence 34444333333 333332334444456788999999999999987777777654 7899999999999999999988877
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHH
Q 008514 92 IGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVY 165 (563)
Q Consensus 92 ~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~ 165 (563)
++..+.... +++|.+....++.|.+.+..+++......+++|+ +||++.|+......++..+-..+.
T Consensus 82 ~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 149 (385)
T TIGR00710 82 LSSLGLALS-------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLG 149 (385)
T ss_pred HHHHHHHHH-------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777654322 2466777677778888888888888888899985 699999999888888876655444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-14 Score=166.98 Aligned_cols=146 Identities=17% Similarity=0.150 Sum_probs=111.1
Q ss_pred cchHHHHHHHHHHHHhcCc-ccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHH
Q 008514 13 NNRWLVFVAAMWIQSCAGI-GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQN 90 (563)
Q Consensus 13 ~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~ 90 (563)
+.+|..++...+..+..|. ....+..-|++++.+|++..+.+++..+..+|..+ .+++|.+.||+|+|.+++++.++.
T Consensus 163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~ 242 (742)
T TIGR01299 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN 242 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 4456666655555555543 23456677889999999999999988878888865 678999999999999999988876
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHH
Q 008514 91 FIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVY 165 (563)
Q Consensus 91 ~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~ 165 (563)
.++..+..++ +++|.+.++-++.|.|.+.....+.....+++|. +||.+.++.-.+..+|+.+-..+.
T Consensus 243 ~i~~ll~afa-------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la 311 (742)
T TIGR01299 243 GFFAFFSSFV-------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMA 311 (742)
T ss_pred HHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666543221 2466766677778888888788888888899984 699999999999888887665544
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-13 Score=149.46 Aligned_cols=169 Identities=18% Similarity=0.215 Sum_probs=119.9
Q ss_pred ccchHHHHHHHHHHHHhcCcc-cccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHH
Q 008514 12 FNNRWLVFVAAMWIQSCAGIG-YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQ 89 (563)
Q Consensus 12 ~~~Rw~~l~a~~~i~l~~Gt~-Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~ 89 (563)
.+++|..+....+..+..+.. +..+...+++++++|+|+.+.+.+.....++..+ +++.|.+.||+|+|.+++++.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 94 (496)
T PRK03893 15 NRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL 94 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 445666555444444444433 3556667999999999999999976666676654 78999999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHHHHh
Q 008514 90 NFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMI 168 (563)
Q Consensus 90 ~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~~~~ 168 (563)
..++.....+. .++|.+.+..++.|.+.+..+.+......++||+ +||.+.|+......+++.+-..+...+
T Consensus 95 ~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 167 (496)
T PRK03893 95 FSVGTLACGFA-------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLV 167 (496)
T ss_pred HHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777654322 2467776677777888887788888888999985 599999999998888887666666544
Q ss_pred cCCChhHHHHHHHHHHHHH
Q 008514 169 HAPDHANLIFMVAVGPAMV 187 (563)
Q Consensus 169 f~~~~~~fll~la~~~~~v 187 (563)
.+.-.....+.++.++.++
T Consensus 168 ~~~~~w~~~f~~~~~~~~~ 186 (496)
T PRK03893 168 VPVWGWRALFFIGILPIIF 186 (496)
T ss_pred hccCCHHHHHHHHHHHHHH
Confidence 4432333333444444333
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.5e-14 Score=142.87 Aligned_cols=326 Identities=21% Similarity=0.299 Sum_probs=225.9
Q ss_pred cccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 008514 31 IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLP 109 (563)
Q Consensus 31 t~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s 109 (563)
..+.++.+.+.+.+++|.|+++.+.+.....++..+ .++.|.+.||+|+|..+.++.+...+++....+. ++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-------~~ 86 (352)
T cd06174 14 DRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-------SS 86 (352)
T ss_pred hhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh-------cc
Confidence 345677888889999999999999987777777755 7899999999999999999999988888765543 24
Q ss_pred HHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 008514 110 LWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVV 188 (563)
Q Consensus 110 ~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~ 188 (563)
+|.+....++.|.+.+..+.+......+++|+ +|+++.|+......++..+-..+...+.+.......+.+
T Consensus 87 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------- 158 (352)
T cd06174 87 LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI-------- 158 (352)
T ss_pred HHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--------
Confidence 67777777778888888888888889999986 799999999888888877665444322110000000000
Q ss_pred HhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhcccc
Q 008514 189 IALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFL 268 (563)
Q Consensus 189 l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~~ 268 (563)
..+..++.... .
T Consensus 159 ---------------------------------------------------------~~~~~~~~~~~-------~---- 170 (352)
T cd06174 159 ---------------------------------------------------------LAILGLLLALL-------L---- 170 (352)
T ss_pred ---------------------------------------------------------HHHHHHHHHHH-------H----
Confidence 00000000000 0
Q ss_pred CCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCCc
Q 008514 269 ERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHR 348 (563)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 348 (563)
.
T Consensus 171 ------------------------------------------------------------------------~------- 171 (352)
T cd06174 171 ------------------------------------------------------------------------L------- 171 (352)
T ss_pred ------------------------------------------------------------------------H-------
Confidence 0
Q ss_pred CCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHh-CCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhc
Q 008514 349 GEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL-GYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDY 425 (563)
Q Consensus 349 ~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~-g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~ 425 (563)
.++ +++|.+.+..++.......+.....++.++. +.++.+ ...++..+.+.++++.+|.++||++||+
T Consensus 172 --------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 242 (352)
T cd06174 172 --------FLL-RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR 242 (352)
T ss_pred --------HHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 000 5566666666666665555666666666665 665543 3677888999999999999999998744
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhh----chhhh
Q 008514 426 AYPRPVAMAVAQFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL----ANPAG 500 (563)
Q Consensus 426 ~~~r~~~l~~~~~~~~~~~lll~~~~-~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~----a~~vg 500 (563)
. .+.....+..++++++.... ...+++...+.|++.+..+......+.|.+..|+.|+.+|+... +..++
T Consensus 243 ~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 317 (352)
T cd06174 243 L-----LLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALG 317 (352)
T ss_pred H-----HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22334444555554444333 44577788999999999999999999999999999999998764 44455
Q ss_pred hhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHH
Q 008514 501 SIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 540 (563)
Q Consensus 501 ~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l 540 (563)
+.+.+...+ ...|+..|.+.+.+++++.++..
T Consensus 318 ~~i~g~l~~--------~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 318 PLLAGLLLD--------TGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHhc--------ccCcchHHHHHHHHHHHHHHHhe
Confidence 554443221 23489999999888888776654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-13 Score=148.65 Aligned_cols=150 Identities=13% Similarity=0.193 Sum_probs=111.0
Q ss_pred hhhhh-ccchHHHHHHHHHHHHhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhh-hhhhcchhhhccchhHHHHH
Q 008514 7 RFVSF-FNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLPIWGALL 84 (563)
Q Consensus 7 ~~~~~-~~~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~-~~gi~~G~l~D~~gp~~~~~ 84 (563)
++|+- +..+|+.+....++.++.+.. +++.+..+++++|+|..++..+.....++. ..+++.|.+.||+|+|.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~ 80 (400)
T PRK11646 3 RVSQARNLGKYFLLIDNMLVVLGFFVV--FPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIV 80 (400)
T ss_pred CCcccccccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHH
Confidence 34443 345688888887777776554 677777899999999999999755544444 45789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHH
Q 008514 85 VGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQ 163 (563)
Q Consensus 85 iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~ 163 (563)
++.+...++...... . +++|.+....++.|.+.+....+......+++| ++||.+.|+......++..+-..
T Consensus 81 ~~~~~~~~~~~~~~~--~-----~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~ 153 (400)
T PRK11646 81 TGMLMRAAGFATMAI--A-----HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGAL 153 (400)
T ss_pred HHHHHHHHHHHHHHH--h-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988777765432 1 246777666666677777666666666788896 57999999988887777666544
Q ss_pred HH
Q 008514 164 VY 165 (563)
Q Consensus 164 i~ 165 (563)
+.
T Consensus 154 l~ 155 (400)
T PRK11646 154 LG 155 (400)
T ss_pred HH
Confidence 44
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-14 Score=151.55 Aligned_cols=174 Identities=15% Similarity=0.077 Sum_probs=108.2
Q ss_pred HHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHh----CCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCC
Q 008514 354 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL----GYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAY 427 (563)
Q Consensus 354 ~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~----g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~ 427 (563)
.++.+|++.+|.+.+..++....-............+. +.+... ...++..+.+.++.+.+|+++||+++++.
T Consensus 216 ~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~- 294 (420)
T PRK09528 216 ALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNA- 294 (420)
T ss_pred HHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh-
Confidence 35678899998876655444332222333344444432 333222 35677788899999999999999988442
Q ss_pred chhHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhh-----hhchhhhh
Q 008514 428 PRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL-----TLANPAGS 501 (563)
Q Consensus 428 ~r~~~l~~~~~~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~-----~~a~~vg~ 501 (563)
+....++..++.+++.. ..+..++....+.|+.++......-..+.|.++.|..++.|+.. .++..+|+
T Consensus 295 -----~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~ 369 (420)
T PRK09528 295 -----LLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLS 369 (420)
T ss_pred -----hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHH
Confidence 22223334444333332 33445556677778887777666667888999999988887652 25666666
Q ss_pred hhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 008514 502 IFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 541 (563)
Q Consensus 502 ~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~ 541 (563)
.+.+...+ ..| |+.+|.+.+++.+++.++.+.
T Consensus 370 ~~~G~l~~-----~~G---~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 370 TLAGNLYD-----SIG---FQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHH-----hhC---chHHHHHHHHHHHHHHHHHHH
Confidence 66554330 012 899999988877766655554
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-13 Score=144.67 Aligned_cols=145 Identities=11% Similarity=0.105 Sum_probs=99.6
Q ss_pred hhhccchHHHHHHHHHHHHhcC-cccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHH
Q 008514 9 VSFFNNRWLVFVAAMWIQSCAG-IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVG 86 (563)
Q Consensus 9 ~~~~~~Rw~~l~a~~~i~l~~G-t~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG 86 (563)
|+..++.|+..+.....+++.. ....+...-+++++++|+|+.+++.+.....++..+ .++.|.+.||+|+|.++.++
T Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 84 (406)
T PRK15402 5 ARLGRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAG 84 (406)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 3344555666555555555422 223333444679999999999999976666676654 78899999999999999998
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCCC-CCcchhhhHhhhhhhHHH
Q 008514 87 ALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKS-RGPVVGILKGFAGLGGAI 160 (563)
Q Consensus 87 ~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~~-RG~~~Gl~~a~~GLSa~i 160 (563)
.+...++....... +++|.+....++.|.+.+...........++||++ |+.+.|+......++..+
T Consensus 85 ~~~~~~~~~~~~~~-------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (406)
T PRK15402 85 VAFFILTCLAILLA-------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLL 152 (406)
T ss_pred HHHHHHHHHHHHHH-------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH
Confidence 88776666554321 24666666667777777776667777778899864 677777776665555443
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=150.27 Aligned_cols=326 Identities=20% Similarity=0.313 Sum_probs=198.5
Q ss_pred cccH-HHHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 008514 37 SISP-VIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMC 114 (563)
Q Consensus 37 ~ys~-~Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~ 114 (563)
..-+ .+++++|+|.+|++++.....++.. .+++.|.+.||+|+|.++.++.+...++..... +. + ++|.+.
T Consensus 17 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~--~~---~--~~~~~~ 89 (352)
T PF07690_consen 17 PALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA--FA---S--NFWLLL 89 (352)
T ss_dssp HHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--HH---C--CHHHHH
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh--hh---h--hHHHHh
Confidence 3334 7889999999999998777777664 588999999999999999999999888843332 22 1 456666
Q ss_pred HHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhhe
Q 008514 115 ILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMF 193 (563)
Q Consensus 115 ~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~l~~~~ 193 (563)
...++.|.+.+..+.+......+++|+ +|+++.|+.-...+++..+-..+...+. +..+
T Consensus 90 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~-~~~~------------------- 149 (352)
T PF07690_consen 90 IARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI-SYFG------------------- 149 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHCH-------------------
T ss_pred hhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh-hccc-------------------
Confidence 777888888888999999999999986 8999999999999999877655554322 1100
Q ss_pred eecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhccccCCCCh
Q 008514 194 IIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDP 273 (563)
Q Consensus 194 ~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~~~~~~~ 273 (563)
.+..+.+. + ....+..++... +..+++++
T Consensus 150 ------------------~~~~~~~~---~---------------------~~~~~~~il~~~---------~~~~~~~~ 178 (352)
T PF07690_consen 150 ------------------WRWAFLIS---A---------------------ILSLIAAILFIL---------FLPEPPPP 178 (352)
T ss_dssp ------------------HCCHHHHH---H---------------------HHHHHHHHHHHC---------CC---STT
T ss_pred ------------------cccccccc---c---------------------chhhhhhhhHhh---------hhhhcccc
Confidence 00001000 0 000000000000 11110000
Q ss_pred hhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCCcCCCCc
Q 008514 274 AEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFT 353 (563)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~t 353 (563)
++++ ++++++ +. .++ +. .+ .
T Consensus 179 ----------~~~~----------------~~~~~~--------~~--------------------~~~---~~--~~-~ 198 (352)
T PF07690_consen 179 ----------RERE----------------SPKESE--------SK--------------------KPK---PL--KP-G 198 (352)
T ss_dssp ----------TT------------------SSTTTT------------------------------HHH---CC--CH--
T ss_pred ----------cccc----------------cccccc--------cc--------------------ccc---cc--cc-c
Confidence 0000 000000 00 000 00 01 2
Q ss_pred HHHHhhcHHHHHHHHHHHhhccchheeeechHHH-HHHhCCC-chhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCch
Q 008514 354 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQM-SQSLGYD-NTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 429 (563)
Q Consensus 354 ~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i-~~~~g~~-~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r 429 (563)
+++..+++.+|.++..+++....-.......... .+..|.+ .... ..++.++...+++++.|.++||+++++..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 276 (352)
T PF07690_consen 199 FKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRL-- 276 (352)
T ss_dssp CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH--
T ss_pred cccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH--
Confidence 4567788888855555555432333333344443 4567887 4443 57888999999999999999998663321
Q ss_pred hHHHHHHHHHHHHHHHHHhhc-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhh
Q 008514 430 PVAMAVAQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIF 503 (563)
Q Consensus 430 ~~~l~~~~~~~~~~~lll~~~-~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l 503 (563)
........+..++..+.... .....+....+.|+++|..+.....++.|.++.++.|+.+|+..+...+|..+
T Consensus 277 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i 350 (352)
T PF07690_consen 277 -LIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGII 350 (352)
T ss_dssp -HHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222222221111122 23456668888999999999999999999999999999999988655555543
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-13 Score=143.90 Aligned_cols=142 Identities=13% Similarity=0.152 Sum_probs=100.2
Q ss_pred chHHHHHHHHHHHHhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHH
Q 008514 14 NRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFI 92 (563)
Q Consensus 14 ~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~ 92 (563)
+=|+.+.+..+..+..+. ...+-|++++++|+|.+|..++..+..++..+ .++.|.+.||+|+|.++.+|.+...+
T Consensus 7 ~~~~~~~~~~~~~~~~~~---~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~ 83 (381)
T PRK03633 7 PVLLLLCGLLLLTLAIAV---LNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAA 83 (381)
T ss_pred HHHHHHHHHHHHHHhhhh---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333 34557888889999999999987777788755 78899999999999999999998877
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHH
Q 008514 93 GYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVY 165 (563)
Q Consensus 93 Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~ 165 (563)
++.+... . +++|.+.+..++.|.+.+...........+..| ++||.+.|+...+..++..+-..+.
T Consensus 84 ~~~~~~~-----~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 150 (381)
T PRK03633 84 GCAGLGL-----M--VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLV 150 (381)
T ss_pred HHHHHHH-----h--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765322 2 246776666677777777665554444555665 6799999998888777776654443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.8e-13 Score=142.54 Aligned_cols=147 Identities=10% Similarity=0.014 Sum_probs=108.3
Q ss_pred ccchHHHHHHHHHHHHhcCcc-cccccccHHHHhhhCCChhhHHHHHHHHhhhh-hhhhcchhhhccchhHHHHHHHHHH
Q 008514 12 FNNRWLVFVAAMWIQSCAGIG-YLFGSISPVIKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLVGALQ 89 (563)
Q Consensus 12 ~~~Rw~~l~a~~~i~l~~Gt~-Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~-~~gi~~G~l~D~~gp~~~~~iG~~~ 89 (563)
.++-|..+........+.++. |.-.-.-|++++++|+|.+|.+.+.....++. ...++.|.+.||+|+|.++.++.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~ 94 (394)
T PRK10213 15 TRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVL 94 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence 344577666555554444443 44444678899999999999999644444444 4588999999999999999999998
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHH
Q 008514 90 NFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVY 165 (563)
Q Consensus 90 ~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~ 165 (563)
..+++.+.. . . +++|.+...-++.|.+.+.....+.....++|| ++||.+.|+.-+..+++..+-..+.
T Consensus 95 ~~~~~~~~~--~---~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~ 164 (394)
T PRK10213 95 LTLSCLLVS--F---A--NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLG 164 (394)
T ss_pred HHHHHHHHH--H---H--ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877765432 1 1 257777777777788888777888888889997 5699999999998888876554444
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-13 Score=144.14 Aligned_cols=135 Identities=13% Similarity=0.152 Sum_probs=93.1
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHH
Q 008514 399 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAA 477 (563)
Q Consensus 399 ~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~ 477 (563)
..++.++.+.++++.+|+++||++|++. . .....+..++.+.+.. ..+..+++..++.|++.|.........+
T Consensus 263 ~~~~~~l~~~~~~~~~g~l~dr~g~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 336 (408)
T PRK09874 263 IASVPGVAALLSAPRLGKLGDRIGPEKI----L--ITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLL 336 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchh----H--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 4456778899999999999999977432 1 2222233333333332 2333456677788999999998888888
Q ss_pred HHhhccCcchhhhhhhh----hchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008514 478 SELFGLKKFGALYNFLT----LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTT 547 (563)
Q Consensus 478 se~FG~k~fg~nyg~~~----~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r 547 (563)
.+....++.|+.+++.. ++..+||.+.+...+ ...|+.+|.+.+++.+++.++.....+|.+
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~--------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 402 (408)
T PRK09874 337 VYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA--------NYGFRAVFLVTAGVVLFNAVYSWNSLRRRR 402 (408)
T ss_pred HHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh--------hcchhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888888888643 566677766553321 123899999999999888887766555444
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.9e-13 Score=144.88 Aligned_cols=374 Identities=10% Similarity=0.022 Sum_probs=218.1
Q ss_pred cCccccc-ccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008514 29 AGIGYLF-GSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAP 106 (563)
Q Consensus 29 ~Gt~Y~f-S~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~ 106 (563)
-|..+.. +..-|++++++|+|..|...+.....+|..+ +++.|.+.||+|+|.++.+|.++..+|..++.... .
T Consensus 15 ~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~--~-- 90 (410)
T TIGR00885 15 WGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAA--E-- 90 (410)
T ss_pred HHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--h--
Confidence 3434333 3566999999999999999987777777755 88999999999999999999999888887643221 1
Q ss_pred CchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHHHHhcCCCh-hHHHHHHHHHH
Q 008514 107 VLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHAPDH-ANLIFMVAVGP 184 (563)
Q Consensus 107 ~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~-~~fll~la~~~ 184 (563)
..++|.+....++.|.|.++.+++.-....+..|+ +|+...++.-+++++++.+-..+...++..+. ..-...+.
T Consensus 91 ~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~--- 167 (410)
T TIGR00885 91 IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLD--- 167 (410)
T ss_pred hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhh---
Confidence 12577777777888999999888777777778874 58999999999999988777655543321100 00000000
Q ss_pred HHHHHhhheeecccCCCCCCC-CCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchh
Q 008514 185 AMVVIALMFIIRPVGGHRQVR-PSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPII 263 (563)
Q Consensus 185 ~~v~l~~~~~vr~~~~~~~~~-~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~ 263 (563)
+..+...+.. ..+....+. .|+... .......++. .
T Consensus 168 -----------~~~~~~~~~~~~~~~~~w~~---------~fl~~a---------------~~~~~~~~~~-~------- 204 (410)
T TIGR00885 168 -----------KLSPEELSAIKHSDLASVQT---------PYMIIG---------------AVVLAVALLI-M------- 204 (410)
T ss_pred -----------hcCHHHHHHHHHHHHHHHHH---------HHHHHH---------------HHHHHHHHHH-H-------
Confidence 0000000000 000000111 111110 0000000000 0
Q ss_pred hccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 008514 264 LSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRR 343 (563)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (563)
..+ .| +. +++ ++++ +
T Consensus 205 ---~~~--~p-------~~--~~~---------------~~~~----~-------------------------------- 219 (410)
T TIGR00885 205 ---LTK--MP-------AL--NHS---------------DAKQ----I-------------------------------- 219 (410)
T ss_pred ---Hhc--CC-------CC--Ccc---------------cccc----c--------------------------------
Confidence 000 00 00 000 0000 0
Q ss_pred CCCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCc--h--hHHHHHHHHHHhhhhhhhhhhhh
Q 008514 344 RGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDN--T--HIFVSMISIWNFLGRVGGGYFSE 419 (563)
Q Consensus 344 ~~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~--~--~~~Vsl~si~n~~GRl~~G~lsD 419 (563)
+ ...+.++.+|++.+|+..+..++-.|.-.+..+++.+..++.+.+. . ....+.+...-.+||+++|++.|
T Consensus 220 --~---~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~ 294 (410)
T TIGR00885 220 --S---FSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLIS 294 (410)
T ss_pred --c---chhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0012346788999999888888877776667778888887754332 2 22566666778999999999999
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh--hch
Q 008514 420 IIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT--LAN 497 (563)
Q Consensus 420 ~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~--~a~ 497 (563)
|+.+|+ .+.+...+..+.+++....+......+.+++|++.+..|...-++..+.+|.+.-..--+++. ++.
T Consensus 295 r~~~~~------~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~~Gg 368 (410)
T TIGR00885 295 YLAAHK------VLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAIIGG 368 (410)
T ss_pred HcCHHH------HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHhcc
Confidence 986632 223333333334434333333234567788899999999999999999999544222233222 566
Q ss_pred hhhhhhccCCCCCCCCccccCcccHHHHHHHHH
Q 008514 498 PAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSG 530 (563)
Q Consensus 498 ~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~ 530 (563)
.+.|.+.+...+..+ + ...+.|+.+|++...
T Consensus 369 a~~p~l~G~~~d~~~-~-~~~~~~~~~~~~~~~ 399 (410)
T TIGR00885 369 GIVPPLQGFIIDMKE-I-AAAPAVNTSFILPLL 399 (410)
T ss_pred chHHHHHHHHHHHhc-c-cccCccchHHHHHHH
Confidence 777777664331000 0 001248889987543
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.7e-13 Score=146.64 Aligned_cols=117 Identities=14% Similarity=0.041 Sum_probs=80.5
Q ss_pred cccccHHHHhhhCCChhh-HHHH---H--HHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 008514 35 FGSISPVIKSSLNYNQKQ-IARL---G--VAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPV 107 (563)
Q Consensus 35 fS~ys~~Lk~~lg~sq~~-l~~i---~--~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~ 107 (563)
++...+.+++.++.+.++ .+.+ + .+..+|..+ +++.|.+.||+|+|.++.++.++..++-.+. +..+
T Consensus 35 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~-----a~~~- 108 (490)
T PRK10642 35 YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCI-----GLIP- 108 (490)
T ss_pred HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-----Hhcc-
Confidence 344566778888654433 2222 1 223344433 7789999999999999999999877776643 2232
Q ss_pred chHH--------HHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhH
Q 008514 108 LPLW--------AMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGG 158 (563)
Q Consensus 108 ~s~~--------~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa 158 (563)
+++ ++.++-++.|.|.+..++++.....+||| ++||++.++...+..+|.
T Consensus 109 -~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~ 167 (490)
T PRK10642 109 -SYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGF 167 (490)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 232 24566778889999889999999999997 579999888765544443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.3e-13 Score=143.73 Aligned_cols=142 Identities=11% Similarity=-0.076 Sum_probs=89.3
Q ss_pred hccchHHHHHHHHHHHHhcC-cccccccccHHHHhhhC---CChhhHHHH---HHHHhhhh-hhhhcchhhhccchhHHH
Q 008514 11 FFNNRWLVFVAAMWIQSCAG-IGYLFGSISPVIKSSLN---YNQKQIARL---GVAKDLGD-SVGFLAGSLCEVLPIWGA 82 (563)
Q Consensus 11 ~~~~Rw~~l~a~~~i~l~~G-t~Y~fS~ys~~Lk~~lg---~sq~~l~~i---~~a~~vG~-~~gi~~G~l~D~~gp~~~ 82 (563)
.+.+||..++.+.+...... -.+.++.-++.+++.++ .+..|...+ -...-++. ..+++.|.+.||+|+|.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~ 95 (432)
T PRK10406 16 DTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS 95 (432)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 34567765555433333222 12446777788999884 555543332 12223333 236789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhh
Q 008514 83 LLVGALQNFIGYGWVWLIVTGRAP--VLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGF 153 (563)
Q Consensus 83 ~~iG~~~~~~Gy~~~~l~~~g~i~--~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~ 153 (563)
+.++.+...++.....++ .+... ..+.+.+.+.-++.|.|.+..+.++.....+++| ++||.+.++.-.+
T Consensus 96 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~ 168 (432)
T PRK10406 96 MLISVCMMCFGSLVIACL-PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVT 168 (432)
T ss_pred HHHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHH
Confidence 999998877776653221 11100 0122345566678889988888888888899997 5799887765443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-13 Score=147.27 Aligned_cols=183 Identities=10% Similarity=0.082 Sum_probs=125.7
Q ss_pred HHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCch----------hHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 008514 354 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT----------HIFVSMISIWNFLGRVGGGYFSEIIVR 423 (563)
Q Consensus 354 ~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~----------~~~Vsl~si~n~~GRl~~G~lsD~~~~ 423 (563)
.++.+|+++||.+.+..++....-..+..+.....++.|.++. ...+++..+...++++..|.++||+++
T Consensus 201 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~ 280 (418)
T TIGR00889 201 AFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGI 280 (418)
T ss_pred HHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3568899999988888777644333333445555666665431 347788889999999999999999977
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHhhcC--c---hhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh----
Q 008514 424 DYAYPRPVAMAVAQFVMAIGHIFLGMGW--P---GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT---- 494 (563)
Q Consensus 424 ~~~~~r~~~l~~~~~~~~~~~lll~~~~--~---~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~---- 494 (563)
|+. +....++..++..++.... . ..+++..++.|+++|......+.+++|.++.++.|+.+|+..
T Consensus 281 r~~------l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~ 354 (418)
T TIGR00889 281 KKV------MLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCN 354 (418)
T ss_pred HHH------HHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 432 2333334444433333211 1 235567888899999998899999999999999999999874
Q ss_pred -hchhhhhhhccCCCCCCCCccccC---cccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008514 495 -LANPAGSIFTSMPRVDEPLKCEGS---ICYFLTSMIMSGLCIVAVILSMILVHRTT 547 (563)
Q Consensus 495 -~a~~vg~~l~~~~~~~~~~~C~G~---~cy~~~f~i~~~~~~~~~~l~l~l~~R~r 547 (563)
++..+||.+.+... +..|. ..|+.+|.+.+.+++++.++..++.++.+
T Consensus 355 ~lg~~iGp~l~G~l~-----~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 355 GFGSLLGYILSGVMV-----EKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred hhHHHHHHHHHHHHH-----HHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 34556666666432 00121 35999999998888888877777776543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-12 Score=139.87 Aligned_cols=140 Identities=14% Similarity=0.034 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHHHhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHH
Q 008514 15 RWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIG 93 (563)
Q Consensus 15 Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~G 93 (563)
.|..+..++..++...+.+.+.-.-+++++++|+|.+|+..+.....++..+ +++.|.+.||+|+|.++.++.++..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 84 (401)
T PRK11043 5 KGFLVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALG 84 (401)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHH
Confidence 3455555555555555555555555677899999999999987777777654 789999999999999999988877666
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCCC-CCcchhhhHhhhhhhHHHH
Q 008514 94 YGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKS-RGPVVGILKGFAGLGGAIL 161 (563)
Q Consensus 94 y~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~~-RG~~~Gl~~a~~GLSa~i~ 161 (563)
..+.. +. +++|.+.+..++.|.|.+...........++||++ |+.+.+......++++.+-
T Consensus 85 ~~~~~--~~-----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 146 (401)
T PRK11043 85 SLGML--WV-----ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALA 146 (401)
T ss_pred HHHHH--Hh-----cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 65432 21 24666665556666666555444445566889865 5666666655555555444
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.6e-13 Score=138.79 Aligned_cols=322 Identities=15% Similarity=0.101 Sum_probs=196.3
Q ss_pred HHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 008514 42 IKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVG 120 (563)
Q Consensus 42 Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~ 120 (563)
...+++.|..|+..+.....++.. ..++.|.+.||+|+|.++.++.+...++..+....-. .+..++|.+....++.
T Consensus 25 ~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~ 102 (365)
T TIGR00900 25 YVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVAL--LGGLNIWQVYVLAGIL 102 (365)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH--cCCCcHHHHHHHHHHH
Confidence 445678999999998777777765 4889999999999999999988877777665443321 1223577777666777
Q ss_pred ccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhheeecccC
Q 008514 121 NNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIRPVG 199 (563)
Q Consensus 121 g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~ 199 (563)
|.+.+...++......+++| ++||.+.|+.-....++..+-..+.....+ .. +
T Consensus 103 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~--------~~------------------g 156 (365)
T TIGR00900 103 AIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA--------TL------------------G 156 (365)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--------Hh------------------h
Confidence 78888888888888889998 569999999998888887655433321100 00 0
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhccccCCCChhhhhhc
Q 008514 200 GHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALL 279 (563)
Q Consensus 200 ~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~~~~~~~~~~~~~ 279 (563)
... .+.... ...++..+++. ..+. ++
T Consensus 157 ------------~~~---------~~~~~~---------------~~~~~~~~~~~----------~~~~-~~------- 182 (365)
T TIGR00900 157 ------------IKW---------AIWVDA---------------VGFAISALLIV----------SVRI-PE------- 182 (365)
T ss_pred ------------HHH---------HHHHHH---------------HHHHHHHHHHH----------hccc-cc-------
Confidence 000 000000 00000000000 0000 00
Q ss_pred CCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCCcCCCCcHHHHhh
Q 008514 280 SKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALI 359 (563)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~t~~~~l~ 359 (563)
+++++ +++ .+ ++. . .+ .....++.+|
T Consensus 183 --~~~~~-----------------~~~-~~-----~~~-~--------------------~~--------~~~~~~~~~~ 208 (365)
T TIGR00900 183 --LAASE-----------------IQA-LS-----NAV-L--------------------RD--------TREGIKFVLK 208 (365)
T ss_pred --CCCcc-----------------ccc-cc-----hhH-H--------------------HH--------HHhHHHHHHc
Confidence 00000 000 00 000 0 00 0012456788
Q ss_pred cHHHHHHHHHHHhhccchheeeechHHH-HHH-hCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHH
Q 008514 360 KADFWLIFFSLLLGSGSGLTVIDNLGQM-SQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAV 435 (563)
Q Consensus 360 s~~Fwll~~~~~~~~g~gl~~i~n~~~i-~~~-~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~ 435 (563)
++.+|.+.+..++..........+..|. .++ +|.++.+ ...+..++.+.++++..|+++||.+|++ .+..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~ 282 (365)
T TIGR00900 209 NPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMA------LMTG 282 (365)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH------HHHH
Confidence 9999988887777666555555344444 444 5776654 3667788999999999999999886632 2222
Q ss_pred HHHHHHHHHHHHhhcC--chhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh----hchhhhhhhcc
Q 008514 436 AQFVMAIGHIFLGMGW--PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTS 505 (563)
Q Consensus 436 ~~~~~~~~~lll~~~~--~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~----~a~~vg~~l~~ 505 (563)
...+..++.+++.... ...+++...+.|+++|........++.|.+..++.|+.+|+.. ++..+|+.+.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g 358 (365)
T TIGR00900 283 AIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAG 358 (365)
T ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333433333222 3355667888899999999999999999999999899888764 45555555443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-12 Score=138.01 Aligned_cols=405 Identities=17% Similarity=0.200 Sum_probs=230.8
Q ss_pred hhhhccchHHHHHHHHHHHHhcC--cccccccccHHHHhhhCCChhhHHHHHHHHhhhh-hhhhcchhhhccchhHHHHH
Q 008514 8 FVSFFNNRWLVFVAAMWIQSCAG--IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLPIWGALL 84 (563)
Q Consensus 8 ~~~~~~~Rw~~l~a~~~i~l~~G--t~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~-~~gi~~G~l~D~~gp~~~~~ 84 (563)
.|+..+.||.+++ ++++.-++= +-=.|++=.|+|++++++|.+|+..++++..+.= ..=+..|.+.||..||..+.
T Consensus 20 ~~~y~~~r~qif~-~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~ 98 (448)
T COG2271 20 DKTYKRWRIQIFL-SIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMA 98 (448)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeeh
Confidence 3444455555544 444422210 1126888999999999999999999855444432 33567899999999999877
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHH
Q 008514 85 VGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQ 163 (563)
Q Consensus 85 iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~ 163 (563)
+|-++..+--.+ -|.. ++++.+.++.++-|.=|++.-.+|-.+-.+|||+ +||+..++--...-.|+++...
T Consensus 99 ~gLilsai~nil-----~Gfs--~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~ 171 (448)
T COG2271 99 FGLILSAIVNIL-----FGFS--PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPL 171 (448)
T ss_pred HHHHHHHHHHHH-----Hhhh--hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHH
Confidence 776654333322 2333 2677777777777777777778999999999986 5999999999999999988876
Q ss_pred HHH-HhcCCChhHHHHHHHHHHHHHHHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhH
Q 008514 164 VYT-MIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTV 242 (563)
Q Consensus 164 i~~-~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 242 (563)
+.. +++ . . +. + - ..++|..+
T Consensus 172 ~~~la~~------------------------~----~-~~-----~---w--------~~~f~~pg-------------- 192 (448)
T COG2271 172 VALLAFF------------------------A----F-HG-----G---W--------RAAFYFPG-------------- 192 (448)
T ss_pred HHHHHHH------------------------H----h-cc-----c---h--------hHHHHHHH--------------
Confidence 653 110 0 0 00 0 0 01111111
Q ss_pred HHHHHHHHHHHhhcccccchhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHH
Q 008514 243 IIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRI 322 (563)
Q Consensus 243 ~~~~~~i~~~ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (563)
..++++.+.++- ..+ +.|+++.+. .. |+.+.+..+.
T Consensus 193 --iiaiival~~~~---------~~r--d~Pqs~GLP-~i--------------------e~~~~d~~e~---------- 228 (448)
T COG2271 193 --IIAIIVALILLF---------LLR--DRPQSEGLP-PI--------------------EEYRGDPLEI---------- 228 (448)
T ss_pred --HHHHHHHHHHHH---------HhC--CCccccCCC-CH--------------------HHhhcCchhh----------
Confidence 111111111100 112 222222211 10 0000000000
Q ss_pred HHHHHHHHhhhhhhhhhhhccCCCCcCCCCcHH-----HHhhcHHHHHHHHHHHhhccchheeeechHHHH-H-HhCCCc
Q 008514 323 AQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLT-----QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS-Q-SLGYDN 395 (563)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~t~~-----~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~-~-~~g~~~ 395 (563)
+ +++ +.+++.|.+ -.++|+.-|++.++.++.--.=..+. .=+|+. . ..+++.
T Consensus 229 ------------~---~~~-----~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~-dW~p~YL~e~k~~s~ 287 (448)
T COG2271 229 ------------Y---EEE-----KENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGIN-DWGPLYLSEVKGFSL 287 (448)
T ss_pred ------------h---hhh-----ccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHhcCCCH
Confidence 0 000 001123333 35799999999988877543333332 333332 2 346665
Q ss_pred hh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHhh-hhhhcc
Q 008514 396 TH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW-PGAMYVGTLLIGLG-YGAHWA 471 (563)
Q Consensus 396 ~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~-~~~l~~~~~l~Gl~-~G~~~~ 471 (563)
.+ ..++++=++...|-+++||+|||+-+.++-|- .+++...+..++....++... .....+...++|+- ||=.
T Consensus 288 ~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~-~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPq-- 364 (448)
T COG2271 288 VKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPM-ALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQ-- 364 (448)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchH-HHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHH--
Confidence 43 48999999999999999999999976555542 122222222222111222222 22333455556765 6665
Q ss_pred hhHHHHHHhhccCc-chhhhhhhhh-chhhhhhhccCCC---CCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008514 472 IVPAAASELFGLKK-FGALYNFLTL-ANPAGSIFTSMPR---VDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRT 546 (563)
Q Consensus 472 l~p~i~se~FG~k~-fg~nyg~~~~-a~~vg~~l~~~~~---~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~ 546 (563)
+...+.+--|.+|+ -|+-=|+..+ +..+|+.+.+..- .|. .| +...|++..+.++++.++.+.+..++
T Consensus 365 mLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~----~g---W~g~Fi~~~~~a~l~~lll~~~~~~~ 437 (448)
T COG2271 365 MLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT----WG---WDGGFIVLSIAALLAILLLLPVWNAE 437 (448)
T ss_pred HHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec----CC---CcchHHHHHHHHHHHHHHHHHHHhhc
Confidence 55555555566665 7888887754 3333555444321 111 22 67889999999999988888888888
Q ss_pred hhhhhhhh
Q 008514 547 TNVYSHLY 554 (563)
Q Consensus 547 r~~~~~~~ 554 (563)
++.+++..
T Consensus 438 ~~~~~~~~ 445 (448)
T COG2271 438 ERKIRDEK 445 (448)
T ss_pred chhhhhhh
Confidence 77666443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-12 Score=137.35 Aligned_cols=128 Identities=15% Similarity=0.043 Sum_probs=95.4
Q ss_pred HhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008514 27 SCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRA 105 (563)
Q Consensus 27 l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i 105 (563)
......+.+..+-|++++++|+|..+.+++.....++..+ .++.|.+.||+|+|.++++|.+...+++.+....
T Consensus 14 ~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~----- 88 (392)
T PRK10473 14 LYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA----- 88 (392)
T ss_pred HHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh-----
Confidence 3333344555789999999999999999876666677655 6889999999999999999998887777654321
Q ss_pred CCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHH
Q 008514 106 PVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAIL 161 (563)
Q Consensus 106 ~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~ 161 (563)
++++.+....++.|.+.+..+........+++| ++|+++.|+.-+...+++.+-
T Consensus 89 --~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~ 143 (392)
T PRK10473 89 --ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLA 143 (392)
T ss_pred --CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 235555555566677777777777778888997 679999998776665555433
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-13 Score=145.04 Aligned_cols=359 Identities=13% Similarity=0.018 Sum_probs=204.8
Q ss_pred cccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHH
Q 008514 35 FGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAM 113 (563)
Q Consensus 35 fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l 113 (563)
...+-|.+.++++.|..|...+.....++..+ .++.|.+.||+|+|.++.++.++..+++.++... .....+++|.+
T Consensus 36 ~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~l 113 (417)
T PRK10489 36 LGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALN--AFLPEPSLLAI 113 (417)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHH--HHcCCCcHHHH
Confidence 34455777788889999999987777777754 7889999999999998888877766666554321 11112356666
Q ss_pred HHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhh
Q 008514 114 CILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALM 192 (563)
Q Consensus 114 ~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~l~~~ 192 (563)
.+..++.|.+.+...++......+++| ++|+++.++.....+++..+-..+...+.+ ..
T Consensus 114 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~--------~~------------ 173 (417)
T PRK10489 114 YLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA--------AG------------ 173 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH--------HH------------
Confidence 556666667767666777777778897 468999998877776666544333321110 00
Q ss_pred eeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhccccCCCC
Q 008514 193 FIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTD 272 (563)
Q Consensus 193 ~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~~~~~~ 272 (563)
+. ... +.... ....+..+++. ..++.
T Consensus 174 ------~~------------~~~---------~~~~~---------------~~~~~~~~~~~----------~l~~~-- 199 (417)
T PRK10489 174 ------GV------------AWN---------YGLAA---------------AGTFITLLPLL----------RLPAL-- 199 (417)
T ss_pred ------hh------------HHH---------HHHHH---------------HHHHHHHHHHH----------hCCCC--
Confidence 00 000 00000 00000000000 00000
Q ss_pred hhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCCcCCCC
Q 008514 273 PAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDF 352 (563)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 352 (563)
++++++ +++ +.++ . ..
T Consensus 200 ---------~~~~~~----------------~~~-------~~~~----------------------~----------~~ 215 (417)
T PRK10489 200 ---------PPPPQP----------------REH-------PLRS----------------------L----------LA 215 (417)
T ss_pred ---------CCCCcc----------------ccc-------chHH----------------------H----------HH
Confidence 000000 000 0000 0 00
Q ss_pred cHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCch
Q 008514 353 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 429 (563)
Q Consensus 353 t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r 429 (563)
..+..++++.+|.+++..++.... ..+........++ +|.++.. ...++.++++.+|+++.|+++||..+ .|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~----~~ 290 (417)
T PRK10489 216 GFRFLLASPVVGGIALLGGLLTMA-SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARP----GL 290 (417)
T ss_pred HHHHHHcChHHHHHHHHHHHHHHH-HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCc----ch
Confidence 124466778877766554443222 2233345556666 6777653 36678889999999999999986422 12
Q ss_pred hHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh----hchhhhhhhc
Q 008514 430 PVAMAVAQFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFT 504 (563)
Q Consensus 430 ~~~l~~~~~~~~~~~lll~~~~-~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~----~a~~vg~~l~ 504 (563)
.+.....+..++.+++...+ ...+.+...+.|++.|........++.|.+..++.|+.+|+.. ++.++|+.+.
T Consensus 291 --~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~ 368 (417)
T PRK10489 291 --LMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALL 368 (417)
T ss_pred --HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHH
Confidence 22233334444444433322 2234556677788777776777788999999888899888764 5777888877
Q ss_pred cCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008514 505 SMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 548 (563)
Q Consensus 505 ~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r~ 548 (563)
+...+ .-.++.++.+.++...+..++......|+|+
T Consensus 369 G~l~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (417)
T PRK10489 369 GGLGA--------MMTPVASASASGFGLLIIGVLLLLVLGELRR 404 (417)
T ss_pred HHHHH--------HhchhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 74430 0125667766665555544444455555555
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-12 Score=138.86 Aligned_cols=178 Identities=9% Similarity=0.052 Sum_probs=104.0
Q ss_pred HHhhcHHHHHHHHHHHhhcc-chheeeechHHHH-HHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhH
Q 008514 356 QALIKADFWLIFFSLLLGSG-SGLTVIDNLGQMS-QSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 431 (563)
Q Consensus 356 ~~l~s~~Fwll~~~~~~~~g-~gl~~i~n~~~i~-~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~ 431 (563)
+.+|++++|.+.+...+... ..........+.. +.+|.+.... ...+.++...++++++|+++||++||+. .
T Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~----~ 319 (438)
T PRK09952 244 ALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRV----Y 319 (438)
T ss_pred HHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH----H
Confidence 35677788876543332222 2222233333333 3467765432 3345677889999999999999988532 2
Q ss_pred HHHHHHHHHHHHHHH--Hh-hc-Cch-hHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh-----hchhhhh
Q 008514 432 AMAVAQFVMAIGHIF--LG-MG-WPG-AMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT-----LANPAGS 501 (563)
Q Consensus 432 ~l~~~~~~~~~~~ll--l~-~~-~~~-~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~-----~a~~vg~ 501 (563)
. ....+..++.+. .. .. ... .+.....+.++++|...+..+++++|.|+.|+-++-.|+.+ ++..++|
T Consensus 320 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p 397 (438)
T PRK09952 320 I--TGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTP 397 (438)
T ss_pred H--HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHH
Confidence 2 111222222211 11 11 222 23335566688999999999999999999987665555432 4556667
Q ss_pred hhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhh
Q 008514 502 IFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHR 545 (563)
Q Consensus 502 ~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R 545 (563)
++.+...+ .. .+.|+..+...+...+++++..+.+..|
T Consensus 398 ~i~g~l~~-----~~-~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 398 FIAAALVT-----YF-GGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHH-----hc-CCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 66553320 01 1348888888888888887777655443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-12 Score=144.43 Aligned_cols=115 Identities=14% Similarity=0.048 Sum_probs=85.1
Q ss_pred CCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcc
Q 008514 47 NYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGET 125 (563)
Q Consensus 47 g~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~ 125 (563)
+.+..+..++.....+|..+ .++.|.+.||+|+|.++.++.+...++..+..+.... -+..+++.+..+-++.|.+.+
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~r~l~G~~~g 130 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGS-SPKSVMATLCFWRFWLGVGIG 130 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHHHHHHHHHh
Confidence 34556667777777787755 7789999999999999999888777776554332111 111125666777778889999
Q ss_pred hhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHH
Q 008514 126 YFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILT 162 (563)
Q Consensus 126 ~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s 162 (563)
..++.+......+|| ++||++.++.-....++..+-.
T Consensus 131 ~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~ 168 (502)
T TIGR00887 131 GDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGA 168 (502)
T ss_pred hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999998 5699999998888777764443
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-12 Score=142.29 Aligned_cols=129 Identities=16% Similarity=0.072 Sum_probs=94.0
Q ss_pred ccccccc---HHHHhhh--------CCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHH
Q 008514 33 YLFGSIS---PVIKSSL--------NYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLI 100 (563)
Q Consensus 33 Y~fS~ys---~~Lk~~l--------g~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~ 100 (563)
|..++++ +.+++.+ +++..+.+++.....+|..+ .++.|.+.||+|+|.+++++.++..++.....+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~ 105 (479)
T PRK10077 26 YDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWP 105 (479)
T ss_pred cccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444 4466666 89999999987777788755 7889999999999999999999877776654331
Q ss_pred H---hcCC-CC-chHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHH
Q 008514 101 V---TGRA-PV-LPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAIL 161 (563)
Q Consensus 101 ~---~g~i-~~-~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~ 161 (563)
. .... +. ..++.+.++-++.|.+.+..+..+.....+++|+ +||++.|+.-.+..++..+-
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~ 172 (479)
T PRK10077 106 EFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVV 172 (479)
T ss_pred ccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHH
Confidence 0 0000 11 1234445667888899998888888899999984 59999999888777776554
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-12 Score=142.58 Aligned_cols=371 Identities=16% Similarity=0.144 Sum_probs=213.6
Q ss_pred ccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 008514 34 LFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWA 112 (563)
Q Consensus 34 ~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~ 112 (563)
..+..-|.+++++|.|..+...+.....++..+ .++.|.+.||+|+|.++.+|.+...++..+.. .. ++++.
T Consensus 20 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-----~~--~~~~~ 92 (485)
T TIGR00711 20 IVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCG-----VA--PNLEL 92 (485)
T ss_pred HHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-----Cc--CCHHH
Confidence 345667899999999999999987777777755 67899999999999999999998877776532 22 24677
Q ss_pred HHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHh-
Q 008514 113 MCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIA- 190 (563)
Q Consensus 113 l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~l~- 190 (563)
+...-++.|.|.+...+.......+++| ++||.+.|+......+++.+-..+...+.+.......+.......++.++
T Consensus 93 l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~ 172 (485)
T TIGR00711 93 MIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVV 172 (485)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHH
Confidence 7777777788888888888888899997 67999999998888888766655554443322222222222222222222
Q ss_pred hheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhccccCC
Q 008514 191 LMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLER 270 (563)
Q Consensus 191 ~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~~~~ 270 (563)
..++.++ +.+++++ +.... +.. ........+... . .
T Consensus 173 ~~~~~~~-~~~~~~~-----~~d~~-------g~~-------------------l~~~~~~~~~~~-------~---~-- 208 (485)
T TIGR00711 173 AFFILPR-DKPAASE-----NFDFL-------GLL-------------------LLSVGLGSLLYG-------L---S-- 208 (485)
T ss_pred HHHHcCC-ccccccC-----CCcHH-------HHH-------------------HHHHHHHHHHHH-------H---h--
Confidence 2222221 1111111 11100 000 000000000000 0 0
Q ss_pred CChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCCcCC
Q 008514 271 TDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGE 350 (563)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 350 (563)
+ .++++..+ .+ .... .......... .-. ..+.+++.|
T Consensus 209 -~--------~~~~~~~~-----~~--------------------~~~~-~~~~~~~~~~-~~~---~~~~~~~~~---- 245 (485)
T TIGR00711 209 -E--------GPERGWFD-----SN--------------------EILI-LSITGLVAII-AFV---VWELTDDNP---- 245 (485)
T ss_pred -h--------CCCCCCCC-----ch--------------------HHHH-HHHHHHHHHH-HHH---HHHHcCCCC----
Confidence 0 00000000 00 0000 0000000000 000 000001111
Q ss_pred CCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCC
Q 008514 351 DFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAY 427 (563)
Q Consensus 351 ~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~ 427 (563)
....+.+|+++||...+..++................++ .|+++.+. ..+..++...++++++|++.||++||+
T Consensus 246 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~-- 322 (485)
T TIGR00711 246 -LVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRK-- 322 (485)
T ss_pred -ccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHH--
Confidence 122468899999988777666544444444455666665 58776543 667788999999999999999987632
Q ss_pred chhHHHHHHHHHHHHHHHHHh--hc-C--chhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh----hchh
Q 008514 428 PRPVAMAVAQFVMAIGHIFLG--MG-W--PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANP 498 (563)
Q Consensus 428 ~r~~~l~~~~~~~~~~~lll~--~~-~--~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~----~a~~ 498 (563)
.+.+...+.+++.+++. .. . ...+.....+.|++.|..+......+.+.++.++.|+-.|+.. ++..
T Consensus 323 ----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ 398 (485)
T TIGR00711 323 ----LVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGS 398 (485)
T ss_pred ----HHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHH
Confidence 22333444555554443 11 1 2245556788899999988777778888899899898888764 4555
Q ss_pred hhhhhcc
Q 008514 499 AGSIFTS 505 (563)
Q Consensus 499 vg~~l~~ 505 (563)
+|+.+.+
T Consensus 399 ig~~i~g 405 (485)
T TIGR00711 399 IGTALIT 405 (485)
T ss_pred HHHHHHH
Confidence 5555544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-12 Score=135.70 Aligned_cols=125 Identities=12% Similarity=0.088 Sum_probs=95.6
Q ss_pred cccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 008514 33 YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLW 111 (563)
Q Consensus 33 Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~ 111 (563)
..|.-.-|++.+++|+|.+|.+.+..+..++..+ .++.|.+.||+|+|.++.+|.+...++....... +++|
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-------~~~~ 80 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-------QTID 80 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-------ccHH
Confidence 3455666788889999999999986667776654 7899999999999999999998877777654322 1356
Q ss_pred HHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHH
Q 008514 112 AMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQV 164 (563)
Q Consensus 112 ~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i 164 (563)
.+....++.|.+.+..+........+++|+ +||++.|+.-.+.+++..+-..+
T Consensus 81 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 134 (377)
T PRK11102 81 QLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPII 134 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666667777777777777778889984 59999999888878777655433
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.4e-12 Score=136.64 Aligned_cols=128 Identities=18% Similarity=0.215 Sum_probs=98.5
Q ss_pred cccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 008514 33 YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLW 111 (563)
Q Consensus 33 Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~ 111 (563)
-.=+.+-|++|+.+|+|.+|...+.....+|..+ +++.|.+.||+|+|.++.+|.+...+|..+.... .. .++++
T Consensus 43 ~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~--~~--a~~~~ 118 (438)
T PRK10133 43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPA--AE--IMNYT 118 (438)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH--Hh--cCCHH
Confidence 3445678999999999999999987777777755 8899999999999999999999988888764321 11 23577
Q ss_pred HHHHHHHHhccCcchhhhhHHHHHHHhcCCCCC-cchhhhHhhhhhhHHHHHHH
Q 008514 112 AMCILIFVGNNGETYFNTAALVSCVQNFPKSRG-PVVGILKGFAGLGGAILTQV 164 (563)
Q Consensus 112 ~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~~RG-~~~Gl~~a~~GLSa~i~s~i 164 (563)
.+...-++.|.|.+..++++-....+..|++|+ ...++.-+++++++.+=..+
T Consensus 119 ~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~ 172 (438)
T PRK10133 119 LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVF 172 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888888898888777766676676655 47888888888877555433
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.1e-12 Score=136.13 Aligned_cols=120 Identities=12% Similarity=0.012 Sum_probs=86.5
Q ss_pred cccccccHHHHhhhCCChhhHHHH-HHHHhhhh-h-----hhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 008514 33 YLFGSISPVIKSSLNYNQKQIARL-GVAKDLGD-S-----VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRA 105 (563)
Q Consensus 33 Y~fS~ys~~Lk~~lg~sq~~l~~i-~~a~~vG~-~-----~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i 105 (563)
..++.+.|+++++++.+++|...+ .+...++. + ..++.|.+.||+|+|.+++++.+...++..+. +..
T Consensus 32 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~-----~~~ 106 (434)
T PRK15075 32 FLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLI-----AFV 106 (434)
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH-----HhC
Confidence 457899999999999999886543 22222222 1 24678999999999999999998877766543 222
Q ss_pred CCchHH--------HHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHH
Q 008514 106 PVLPLW--------AMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGA 159 (563)
Q Consensus 106 ~~~s~~--------~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~ 159 (563)
+ +++ .+.+.-++.|.+.+..++++.....+++| ++||++.++......++..
T Consensus 107 ~--~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~ 167 (434)
T PRK15075 107 P--GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVV 167 (434)
T ss_pred C--cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHH
Confidence 2 233 23455667788888878888888999997 5799999987766555543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.7e-12 Score=132.04 Aligned_cols=170 Identities=16% Similarity=0.076 Sum_probs=105.3
Q ss_pred HhhcHHHHHHHHHHHhhccchheeeechHHHH-HHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHH
Q 008514 357 ALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 433 (563)
Q Consensus 357 ~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~-~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l 433 (563)
.++++++|.++...++..+...++........ +++|.++.+. ..++..+.+..+++..|+++||++||+. .
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~----~-- 268 (375)
T TIGR00899 195 LLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRL----M-- 268 (375)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhH----H--
Confidence 45677888777666554443333334444444 4567776543 4556667788899999999999977432 1
Q ss_pred HHHHHHHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh----hchhhhhhhccCCC
Q 008514 434 AVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMPR 508 (563)
Q Consensus 434 ~~~~~~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~----~a~~vg~~l~~~~~ 508 (563)
.....+..+..+.+.. .+...++....+.|+++|.........+.|.+. ++.++..++.. ++..+|+.+.+...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~g~~~ 347 (375)
T TIGR00899 269 LLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWIIAGSVGGILA 347 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222222222222 223345556677799999888888888889886 45566666643 56667777666432
Q ss_pred CCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 008514 509 VDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 541 (563)
Q Consensus 509 ~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~ 541 (563)
+ ...|+..|.+.+.+++++.++.++
T Consensus 348 ~--------~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 348 E--------RWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred H--------hccchhHHHHHHHHHHHHHHHHhe
Confidence 0 113899999988888777766544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.4e-12 Score=132.32 Aligned_cols=140 Identities=11% Similarity=-0.006 Sum_probs=91.0
Q ss_pred hccchHHHHHHHHHHHHhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHH
Q 008514 11 FFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQ 89 (563)
Q Consensus 11 ~~~~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~ 89 (563)
.+..||+.+...+.. +..-..+.+...-|++.+++|+|..+...+.....++..+ .++.|.+.||+|+|.++.++.+.
T Consensus 4 ~~~~~~l~~~~~~~~-~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~ 82 (394)
T PRK11652 4 QRNVNLLFMLVLLVA-VGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSI 82 (394)
T ss_pred hhhHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHH
Confidence 334455443333322 2222333444445788899999999999986666666654 78899999999999999999887
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhH
Q 008514 90 NFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGG 158 (563)
Q Consensus 90 ~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa 158 (563)
..++...... . ++++.+.+..++.|.+.+.....+.....+.+| ++|+.+.++...+..++.
T Consensus 83 ~~~~~~~~~~--~-----~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (394)
T PRK11652 83 FILGTLVALF--A-----HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSP 145 (394)
T ss_pred HHHHHHHHHH--H-----ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 7776655332 1 246666666666777766555554445556777 567877776554444443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.9e-12 Score=133.06 Aligned_cols=148 Identities=14% Similarity=0.067 Sum_probs=93.8
Q ss_pred HHHHhhcHH--HHHHHHHHHhhccchheeeechHHHHH-HhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCc
Q 008514 354 LTQALIKAD--FWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYP 428 (563)
Q Consensus 354 ~~~~l~s~~--Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~ 428 (563)
.++.++++. +|......++......+....+..+.+ +.|.++.. ...++..+.+.++++++|+++||++||+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-- 287 (394)
T TIGR00883 210 IRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPV-- 287 (394)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH--
Confidence 455666655 777766666554444444455666664 46776554 36678889999999999999999987432
Q ss_pred hhHHHHHHHHHHHHHHHH-H-hh--cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh-----hchhh
Q 008514 429 RPVAMAVAQFVMAIGHIF-L-GM--GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT-----LANPA 499 (563)
Q Consensus 429 r~~~l~~~~~~~~~~~ll-l-~~--~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~-----~a~~v 499 (563)
.. ....+....+.++ . .. .....++....+.|+++|..+......+.|.+..++-++-+|+.+ ++..+
T Consensus 288 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~ 364 (394)
T TIGR00883 288 --LI-IFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGF 364 (394)
T ss_pred --HH-HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhH
Confidence 11 1111111112111 1 11 222234456677899999999999999999999888777666532 34556
Q ss_pred hhhhccC
Q 008514 500 GSIFTSM 506 (563)
Q Consensus 500 g~~l~~~ 506 (563)
+|.+.+.
T Consensus 365 ~p~~~g~ 371 (394)
T TIGR00883 365 APYIAAA 371 (394)
T ss_pred HHHHHHH
Confidence 6666654
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-11 Score=135.98 Aligned_cols=368 Identities=14% Similarity=0.044 Sum_probs=206.7
Q ss_pred cccccHHHHhhhCCChhhHHHHHHHHhhhh-hhhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHH
Q 008514 35 FGSISPVIKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAM 113 (563)
Q Consensus 35 fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~-~~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l 113 (563)
-++--|++.+++|.|++|++++.++-.++. .+.++.|.+.||+|+|.++++|.+...+|..+... . +++|.+
T Consensus 25 v~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~-----a--~~~~~l 97 (495)
T PRK14995 25 LHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAF-----S--PTASWL 97 (495)
T ss_pred HHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-----c--CCHHHH
Confidence 444578999999999999999877777775 45788999999999999999999988888775322 2 256777
Q ss_pred HHHHHHhccCcchhhhhHHHHHHHhc-C-CCCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-h
Q 008514 114 CILIFVGNNGETYFNTAALVSCVQNF-P-KSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVI-A 190 (563)
Q Consensus 114 ~~~~~l~g~g~~~~~ta~l~t~~k~F-P-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~l-~ 190 (563)
.+.-++.|.|.+..+.+......++| | ++||++.|+.....++++.+-..+...+.+.-.....+.......++.+ +
T Consensus 98 i~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l 177 (495)
T PRK14995 98 IATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGL 177 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHH
Confidence 76667777887877777777777888 4 4699999999999999876665555444333222333322221122222 2
Q ss_pred hheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhcccc-CChhHHHHHHHHHHHHhhcccccchhhccccC
Q 008514 191 LMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVD-LNHTVIIIFTVILFVLLFIPIVIPIILSFFLE 269 (563)
Q Consensus 191 ~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~~~ 269 (563)
...++ |.++.+++++.| ..-......+...+...+.+...+ .+.... ....+..++++. . +.
T Consensus 178 ~~~~l-~~~~~~~~~~~d-----~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~----~----f~-- 240 (495)
T PRK14995 178 TARYV-PRQAGRRDQPLN-----LGHALMLIVAILLLVYSAKTALKGFLSLWVT-SLTLLTGALLLG----L----FI-- 240 (495)
T ss_pred HHHhC-CCCCCCCCCCCC-----hHhHHHHHHHHHHHHHHHHhccccCCchHHH-HHHHHHHHHHHH----H----HH--
Confidence 22222 211111111111 100010011111111100000000 000000 000000000000 0 00
Q ss_pred CCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCCcC
Q 008514 270 RTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRG 349 (563)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 349 (563)
. . +.+.+.|
T Consensus 241 -----------------------------------------------------------------~--~-e~~~~~p--- 249 (495)
T PRK14995 241 -----------------------------------------------------------------R--T-QLAASRP--- 249 (495)
T ss_pred -----------------------------------------------------------------H--H-HhcCCCC---
Confidence 0 0 0000011
Q ss_pred CCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcC
Q 008514 350 EDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYA 426 (563)
Q Consensus 350 ~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~ 426 (563)
.-..+++|++.|+...+..++...+-...........|. +|+++.++ .....++...++.++.|.+.||+++|+
T Consensus 250 --~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~- 326 (495)
T PRK14995 250 --MIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRL- 326 (495)
T ss_pred --CcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH-
Confidence 112468889999887776666544333333334444554 58877654 667788999999999999999997632
Q ss_pred CchhHHHHHHHHHHHHHHHHHhh---c-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh----hchh
Q 008514 427 YPRPVAMAVAQFVMAIGHIFLGM---G-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANP 498 (563)
Q Consensus 427 ~~r~~~l~~~~~~~~~~~lll~~---~-~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~----~a~~ 498 (563)
.+....++.+++..++.. . .....+...++.|++.|..+......+.+....++.|.-.++.. ++..
T Consensus 327 -----~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~ 401 (495)
T PRK14995 327 -----VATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAG 401 (495)
T ss_pred -----HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHH
Confidence 223333334444333221 1 22235567788899999988888888888888888887776643 4445
Q ss_pred hhhhhcc
Q 008514 499 AGSIFTS 505 (563)
Q Consensus 499 vg~~l~~ 505 (563)
+|+.+.+
T Consensus 402 ~G~ai~g 408 (495)
T PRK14995 402 LGIAIFG 408 (495)
T ss_pred HHHHHHH
Confidence 5544443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.9e-12 Score=133.43 Aligned_cols=128 Identities=10% Similarity=0.035 Sum_probs=86.2
Q ss_pred hcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhh-hhhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 008514 28 CAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAP 106 (563)
Q Consensus 28 ~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~-~~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~ 106 (563)
..|....++..++.+++++|+|..|+.++.....++. ...++.|.+.||+|+|.++.++.+...+++.++. +.+
T Consensus 20 ~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~--~~~--- 94 (395)
T PRK10054 20 TIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIP--LVN--- 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHH--HHh---
Confidence 4445555667778899999999999999755444444 5588999999999999999999988777776532 222
Q ss_pred CchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHH
Q 008514 107 VLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILT 162 (563)
Q Consensus 107 ~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s 162 (563)
++|.+.+...+.|.+.+...++.-.-..+.+| ++||++.|+.-....++.++-.
T Consensus 95 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp 149 (395)
T PRK10054 95 --NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGP 149 (395)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34554433333333333334433344456665 4689999988887777665554
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.5e-12 Score=131.54 Aligned_cols=136 Identities=14% Similarity=0.081 Sum_probs=91.7
Q ss_pred HHHhhcHH---HHHHHHHHHhhccchheeeechHHHHHHhCCCchhH--HHHHHH-HHHhhhhhhhhhhhhhhhhhcCCc
Q 008514 355 TQALIKAD---FWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMIS-IWNFLGRVGGGYFSEIIVRDYAYP 428 (563)
Q Consensus 355 ~~~l~s~~---Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~~--~Vsl~s-i~n~~GRl~~G~lsD~~~~~~~~~ 428 (563)
++.++++. +|.+.+..++...+...+.....+..+++|.++++. ..++.+ +...+|.+++|+++||+++++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l- 278 (356)
T TIGR00901 200 REFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYAL- 278 (356)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHH-
Confidence 45566654 777766665554444455567777778888887654 344444 56789999999999999875532
Q ss_pred hhHHHHHHHHHHHHHHHHHhh---c---------CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhc
Q 008514 429 RPVAMAVAQFVMAIGHIFLGM---G---------WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLA 496 (563)
Q Consensus 429 r~~~l~~~~~~~~~~~lll~~---~---------~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a 496 (563)
....++.+++..++.. . ....+..+.++.++++|..+.....++.|.+..++-|+.+|+....
T Consensus 279 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~ 353 (356)
T TIGR00901 279 -----LLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSL 353 (356)
T ss_pred -----HHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 2222223333322211 1 1123444566779999999999999999999999999999987643
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-11 Score=133.09 Aligned_cols=360 Identities=16% Similarity=0.196 Sum_probs=223.4
Q ss_pred HhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Q 008514 43 KSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGN 121 (563)
Q Consensus 43 k~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g 121 (563)
+..++||.+|-+++-.+...|..+ -+|+|.++||+|.|.++..+.++..++..++=++..- ++|.+++.=++-|
T Consensus 65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~-----~~~~~~~~R~lqG 139 (466)
T KOG2532|consen 65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI-----GFYLLLVLRFLQG 139 (466)
T ss_pred CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh-----cchhhHHHHHHhH
Confidence 568999999999998888899877 5678999999999999999999988888776433322 2455566677788
Q ss_pred cCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhheeecccCC
Q 008514 122 NGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGG 200 (563)
Q Consensus 122 ~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~ 200 (563)
.+.+..+++.-.-..||+| ++|++..+++.++.-+|..+--++.... +..
T Consensus 140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~l----------------------c~s------- 190 (466)
T KOG2532|consen 140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLL----------------------CES------- 190 (466)
T ss_pred HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----------------------hcc-------
Confidence 8889888898999999997 6799999999999877776654443211 100
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHH---HHHHHhhcccccchhhccccCCCChhhhh
Q 008514 201 HRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTV---ILFVLLFIPIVIPIILSFFLERTDPAEEA 277 (563)
Q Consensus 201 ~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~---i~~~ll~~~~~i~~~~~~~~~~~~~~~~~ 277 (563)
..+.+..++ .+++ +..++.+. +.. ++|+
T Consensus 191 ----------------------------------~~GW~sifY-~~g~~g~i~~~~w~~---------~~~--d~P~--- 221 (466)
T KOG2532|consen 191 ----------------------------------SLGWPSIFY-VFGIVGLIWFILWFL---------FYS--DSPS--- 221 (466)
T ss_pred ----------------------------------CCCCchHHH-HHHHHHHHHHHHHHH---------Hhc--CCcc---
Confidence 012222222 1111 11111111 000 1110
Q ss_pred hcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCCcCCCCcHHHH
Q 008514 278 LLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQA 357 (563)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~t~~~~ 357 (563)
++..-+ .+| +..+++.+ .+...++..+.+++++
T Consensus 222 -------~h~~is---~~E--l~~I~~~k-----------------------------------~~~~~~~~~~vP~~~i 254 (466)
T KOG2532|consen 222 -------KHPNIS---EKE--LKYIEKGK-----------------------------------SEAHVKKKPPVPYKAI 254 (466)
T ss_pred -------cCCCCC---HHH--HHHHHhcc-----------------------------------cccccCCCCCCCHHHH
Confidence 110000 000 00010100 0000111146789999
Q ss_pred hhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCc----hh
Q 008514 358 LIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYP----RP 430 (563)
Q Consensus 358 l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~----r~ 430 (563)
++++.+|.+|++.++..-.-..++.....-.++ ++++..+ .+.++=-+.+.+-++++|.++||+.+| .++ |.
T Consensus 255 ~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ls~t~~rk 333 (466)
T KOG2532|consen 255 LTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-ILSETTVRK 333 (466)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCchHhHHH
Confidence 999999999999988866666666666666665 6877554 367788889999999999999999876 433 45
Q ss_pred HHHHHHHHHHHHHHHHHhhcC--ch-----hHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh----hchhh
Q 008514 431 VAMAVAQFVMAIGHIFLGMGW--PG-----AMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPA 499 (563)
Q Consensus 431 ~~l~~~~~~~~~~~lll~~~~--~~-----~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~----~a~~v 499 (563)
.+-.+.+...++..+.+.... .. .+.++..+.|++.++..- ....-.++|-+...|+.. ++..+
T Consensus 334 ifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~-----~~~~~apq~a~~l~g~~~~~~~~~~~~ 408 (466)
T KOG2532|consen 334 IFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYK-----NHQDIAPQHAGFVMGIINFVGALAGFI 408 (466)
T ss_pred HHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHh-----hhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 555666666666554444322 11 122233444444444332 222226677777777655 45566
Q ss_pred hhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008514 500 GSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 543 (563)
Q Consensus 500 g~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~ 543 (563)
+|++-+..-++++ .+-.+..|++.+++++++.+.-.++.
T Consensus 409 ~P~~vg~~~~~~t-----~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 409 APLLVGIIVTDNT-----REEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHheeeEeCCCC-----HHHHHHHHHHHHHHHHHhchheeEee
Confidence 6666554321111 24589999999999999886555554
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-11 Score=144.81 Aligned_cols=176 Identities=15% Similarity=0.095 Sum_probs=114.1
Q ss_pred cHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCch
Q 008514 353 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 429 (563)
Q Consensus 353 t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r 429 (563)
.+++..+++.+|.+.+.+++....+.++...+..+.++ +|.++.. ...+.++++..+|.++.|+++|+..+++..+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~ 296 (1140)
T PRK06814 217 LLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPI 296 (1140)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehH
Confidence 35677889999999988887776666666777787776 5777653 37789999999999999999986654332221
Q ss_pred hHHHHHHHHHHHHHHHHH-----------------h-hcCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhh
Q 008514 430 PVAMAVAQFVMAIGHIFL-----------------G-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYN 491 (563)
Q Consensus 430 ~~~l~~~~~~~~~~~lll-----------------~-~~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg 491 (563)
. .+...+..+...+. . ......++++.+++|++.|.......+++.+.+..++.|+.+|
T Consensus 297 ~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g 373 (1140)
T PRK06814 297 G---ALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIA 373 (1140)
T ss_pred H---HHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeH
Confidence 1 11111111111110 0 0222345667888999999999999999999999999999999
Q ss_pred hhh----hchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHH
Q 008514 492 FLT----LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVIL 538 (563)
Q Consensus 492 ~~~----~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l 538 (563)
+.. ++.++|+.+.+.... -...+...|++...++++..++
T Consensus 374 ~~~~~~~~~~~ig~~~~g~l~~-------~~~~~~~~~~~~~~~~~~~~~~ 417 (1140)
T PRK06814 374 ANNVLNAAFMVAGTIILALLQA-------LGFSIPWIILFIALANLIVAIL 417 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------hccCHHHHHHHHHHHHHHHHHH
Confidence 765 345556655443220 0123666666555544444333
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-10 Score=140.70 Aligned_cols=326 Identities=14% Similarity=0.042 Sum_probs=187.2
Q ss_pred ccccHHHHhhhCCChhh--HHHHHHHHhhhh-hhhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 008514 36 GSISPVIKSSLNYNQKQ--IARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWA 112 (563)
Q Consensus 36 S~ys~~Lk~~lg~sq~~--l~~i~~a~~vG~-~~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~ 112 (563)
.+..+.+...++.++++ ..++..+..++. .+++++|.+.||+|+|.+++++.++..++..+..++.. . .++|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~--~--~~~~~ 105 (1146)
T PRK08633 30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY--L--GWFWL 105 (1146)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH--H--ccHHH
Confidence 34455666667776655 344555555555 44789999999999999988887665455444322221 1 14677
Q ss_pred HHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhh
Q 008514 113 MCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIAL 191 (563)
Q Consensus 113 l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~l~~ 191 (563)
+.+..++.|.+.++..++......+++| ++||.+.|+.-....++..+-..+...+.
T Consensus 106 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~---------------------- 163 (1146)
T PRK08633 106 AFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLF---------------------- 163 (1146)
T ss_pred HHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 7777777788888888888888899997 56999999988887776654443332110
Q ss_pred heeecccCCCCCCCCCC-CCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhccccCC
Q 008514 192 MFIIRPVGGHRQVRPSD-SSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLER 270 (563)
Q Consensus 192 ~~~vr~~~~~~~~~~~~-~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~~~~ 270 (563)
..+. +.. +++ ...+...... .. ...++.++ +.. .+++.
T Consensus 164 ~~~~---~~~----~~~~~~~~~~~~~~----~~--------------------~~~~~~~~-~~~---------~~~~~ 202 (1146)
T PRK08633 164 ESVN---GNT----PSEILGRIAPAGLV----LL--------------------AVAVLGLI-FAY---------RLPKV 202 (1146)
T ss_pred Hhhc---ccc----ccccccchHHHHHH----HH--------------------HHHHHHHH-HHh---------cCcCC
Confidence 0000 000 000 0011000000 00 00000000 000 01110
Q ss_pred CChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCCcCC
Q 008514 271 TDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGE 350 (563)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 350 (563)
++ .+... +++ +... . .+ . .
T Consensus 203 ~~-----------~~~~~---------------~~~-~~~~--~--~~----------------------~--------~ 221 (1146)
T PRK08633 203 PA-----------AAPEV---------------FDK-KKYL--F--PK----------------------L--------L 221 (1146)
T ss_pred CC-----------CCccc---------------ccc-cccc--c--HH----------------------H--------H
Confidence 00 00000 000 0000 0 00 0 0
Q ss_pred CCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCch-h--HHHHHHHHHHhhhhhhhhhhhhhhhhhcC
Q 008514 351 DFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT-H--IFVSMISIWNFLGRVGGGYFSEIIVRDYA 426 (563)
Q Consensus 351 ~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~-~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~ 426 (563)
...+++.++++.+|.+.+..++.......+...+.+..++ +|.+.. . ...++..++..+|.+++|+++||.+++..
T Consensus 222 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~ 301 (1146)
T PRK08633 222 WRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGL 301 (1146)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccc
Confidence 0134567888999988777777666555555666666654 677765 3 36677888899999999999998866332
Q ss_pred CchhHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhh
Q 008514 427 YPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL 495 (563)
Q Consensus 427 ~~r~~~l~~~~~~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~ 495 (563)
. .+..++++++.+++.. .....+.+..++.|+++|........++.+.+..++-|+.+++..+
T Consensus 302 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~ 365 (1146)
T PRK08633 302 V------PLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNF 365 (1146)
T ss_pred h------hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHH
Confidence 1 2222333333333332 2333456678888999999998889999999998988988887654
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.4e-11 Score=125.41 Aligned_cols=117 Identities=12% Similarity=0.020 Sum_probs=81.5
Q ss_pred HHhhhCCChhhHHHHHHHHhhhhhhhhcchhhhccc-----hhH-HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 008514 42 IKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVL-----PIW-GALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCI 115 (563)
Q Consensus 42 Lk~~lg~sq~~l~~i~~a~~vG~~~gi~~G~l~D~~-----gp~-~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~ 115 (563)
|++ .|+|-+|+.++...... -.+.++.|.+.||+ |+| ..+.++.+...+...++. +.. +..++|.+..
T Consensus 26 l~~-~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~--~~~--~~~~~~~l~~ 99 (402)
T PRK11902 26 MTV-EGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMA--FCP--PHAALWPLAG 99 (402)
T ss_pred HHH-cCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHH--hcC--ccchHHHHHH
Confidence 454 59999999988655554 36789999999999 554 456666665545555432 222 1235777666
Q ss_pred HHHHhccCcchhhhhHHHHHHHhcCCC-CCcchhhhHhhhhhhHHHHHHH
Q 008514 116 LIFVGNNGETYFNTAALVSCVQNFPKS-RGPVVGILKGFAGLGGAILTQV 164 (563)
Q Consensus 116 ~~~l~g~g~~~~~ta~l~t~~k~FP~~-RG~~~Gl~~a~~GLSa~i~s~i 164 (563)
+.++.+...+..+.+.-....+++|++ ||.+.++...+++++..+-..+
T Consensus 100 ~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l 149 (402)
T PRK11902 100 LAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGL 149 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHH
Confidence 655555666777778778888999865 9999999998888876655443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-10 Score=127.48 Aligned_cols=115 Identities=16% Similarity=0.014 Sum_probs=77.8
Q ss_pred HhhhCCChhhHHHHHHHHhhhhhhhhcchhhhccc-----hhHHH-HHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 008514 43 KSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVL-----PIWGA-LLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCIL 116 (563)
Q Consensus 43 k~~lg~sq~~l~~i~~a~~vG~~~gi~~G~l~D~~-----gp~~~-~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~ 116 (563)
.+..|.|.+|+..++..... -.+.++.|.+.||+ |+|.. +.++.+...++..++ .+.. |..++|.+...
T Consensus 39 l~~~g~~~~~ig~~~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~--a~~~--~~~~l~~l~~~ 113 (491)
T PRK11010 39 MTVENIDLKTIGFFSLVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAM--GFLE--PGTQLRWLAAL 113 (491)
T ss_pred HHhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHH--HHcC--CcchHHHHHHH
Confidence 34568888888886332222 24678899999999 87664 555555544454433 2222 22356766655
Q ss_pred HHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHH
Q 008514 117 IFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILT 162 (563)
Q Consensus 117 ~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s 162 (563)
.++.+.+.+..+.+.-....++|| ++||.+.|+...++.++..+-.
T Consensus 114 ~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~ 160 (491)
T PRK11010 114 AVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSG 160 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHH
Confidence 566666677777787888889997 7799999999888888765554
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.9e-10 Score=120.36 Aligned_cols=146 Identities=10% Similarity=0.015 Sum_probs=88.9
Q ss_pred echHHHHH-HhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHh-hcCchhHHH
Q 008514 382 DNLGQMSQ-SLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYV 457 (563)
Q Consensus 382 ~n~~~i~~-~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~-~~~~~~l~~ 457 (563)
.......+ +.++++.+. ..++..+...++++++|+++||++||+. ... ......+...... ...+..+.+
T Consensus 237 ~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~l~ 310 (393)
T PRK15011 237 INMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFL----MRV--AAVAGVCFYAGMLMAHSPAILLG 310 (393)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH----HHH--HHHHHHHHHHHHHHHhhHHHHHH
Confidence 44555554 467776543 5566667788899999999999988532 111 1111111111111 223333444
Q ss_pred HHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhh----hhchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHH
Q 008514 458 GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL----TLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCI 533 (563)
Q Consensus 458 ~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~----~~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~ 533 (563)
...+.++++|...+..+....|.+. ++-|+..++. .++..+|+.+.+...+ ...|+..|.+...+++
T Consensus 311 ~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~--------~~g~~~~~~~~~~~~~ 381 (393)
T PRK15011 311 LQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAE--------IWNYHAVFWFALVMII 381 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhhHHHHHHHHHHHH
Confidence 5566677888888888888899987 5577766654 3566667766654320 0138888888877777
Q ss_pred HHHHHHHHH
Q 008514 534 VAVILSMIL 542 (563)
Q Consensus 534 ~~~~l~l~l 542 (563)
+++++.+.+
T Consensus 382 ~~~~~~~~~ 390 (393)
T PRK15011 382 ATLFCLLRI 390 (393)
T ss_pred HHHHHHHhh
Confidence 766555543
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.7e-10 Score=121.43 Aligned_cols=175 Identities=10% Similarity=0.029 Sum_probs=106.6
Q ss_pred cHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHh----CCCch--hHHHHHHHHHHhhhhhhhhhhhhhhhhhcC
Q 008514 353 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL----GYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYA 426 (563)
Q Consensus 353 t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~----g~~~~--~~~Vsl~si~n~~GRl~~G~lsD~~~~~~~ 426 (563)
+.+|.+|++++|.+.+..++....-....+......++. +.+.. ....++..+.+.++.+..|.+.||+++|+.
T Consensus 207 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~ 286 (396)
T TIGR00882 207 LALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNA 286 (396)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 357889999998776554443221111222233344443 22222 235667788899999999999999987432
Q ss_pred CchhHHHHHHHHHHHHHHHHHh-hcCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhh-----hhhchhhh
Q 008514 427 YPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNF-----LTLANPAG 500 (563)
Q Consensus 427 ~~r~~~l~~~~~~~~~~~lll~-~~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~-----~~~a~~vg 500 (563)
+.+...+.+++..++. ...+..+++...+-|++++......-..+.+.++.|.-++.++. ..++..++
T Consensus 287 ------l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~ 360 (396)
T TIGR00882 287 ------LLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFL 360 (396)
T ss_pred ------HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHH
Confidence 2333333444433333 23344556667777888776666666667788887876665543 23566677
Q ss_pred hhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 008514 501 SIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 541 (563)
Q Consensus 501 ~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~ 541 (563)
+.+.+...+ .. .|+.+|.+.+.+.++..+++.+
T Consensus 361 ~~l~G~l~~-----~~---G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 361 STLAGNMYD-----SI---GFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHhHHHHHH-----hc---ccHHHHHHHHHHHHHHHHHHHH
Confidence 766554431 01 2899999998888887777654
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.6e-10 Score=119.40 Aligned_cols=168 Identities=7% Similarity=-0.075 Sum_probs=108.4
Q ss_pred cHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchh
Q 008514 353 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 430 (563)
Q Consensus 353 t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 430 (563)
+.++.+|+++||.+.+..++..++-..+.+...+..++.|.++... ..++..+...++.+.+|.+.||+++ .+
T Consensus 197 ~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~----~~- 271 (382)
T TIGR00902 197 AFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSA----RD- 271 (382)
T ss_pred hHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCH----HH-
Confidence 3567899999999998888877776677778888888988887543 4445555555555555555555543 22
Q ss_pred HHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh-----hchhhhhhhc
Q 008514 431 VAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT-----LANPAGSIFT 504 (563)
Q Consensus 431 ~~l~~~~~~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~-----~a~~vg~~l~ 504 (563)
.+.+..+...+...+... .+...++....+-|+++|..+......+.+. ..++.++-.++.. ++..+|+++.
T Consensus 272 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~ 349 (382)
T TIGR00902 272 -LLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFA 349 (382)
T ss_pred -HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444555555444443 3334566678888999999999999999987 5566665555432 4555666665
Q ss_pred cCCCCCCCCccccCcccHHHHHHHHHHHHHHH
Q 008514 505 SMPRVDEPLKCEGSICYFLTSMIMSGLCIVAV 536 (563)
Q Consensus 505 ~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~ 536 (563)
+...+ .. .+ ..|.+++.+.++++
T Consensus 350 G~l~~-------~~-g~-~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 350 GFIYP-------TL-GA-GTFVFMAIIAAAAF 372 (382)
T ss_pred HHHHH-------hc-cH-HHHHHHHHHHHHHH
Confidence 54330 01 13 56777766665543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.9e-09 Score=112.11 Aligned_cols=368 Identities=15% Similarity=0.186 Sum_probs=236.0
Q ss_pred chHHHHHHHHHHHHhcCcc-cccccccHHHHhhhCCChhhHHHH-HHHHhhhhhhhhcchhhhccchhHHHHHHHHHHHH
Q 008514 14 NRWLVFVAAMWIQSCAGIG-YLFGSISPVIKSSLNYNQKQIARL-GVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNF 91 (563)
Q Consensus 14 ~Rw~~l~a~~~i~l~~Gt~-Y~fS~ys~~Lk~~lg~sq~~l~~i-~~a~~vG~~~gi~~G~l~D~~gp~~~~~iG~~~~~ 91 (563)
+.|..+.+=.....+.|+. |.-.--=|++.+.+|.|..+.... +...-.....+++-..+.||+.+|.+++...+++.
T Consensus 10 ~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi 89 (394)
T COG2814 10 PMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFI 89 (394)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 3344444444445555555 666677799999999999999984 55555555668999999999999999988888877
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHHhcC
Q 008514 92 IGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHA 170 (563)
Q Consensus 92 ~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~ 170 (563)
+|-.+..++ ++++.+.+-=++.|...+.+..-+...++|-=| +|||.+.|++..+.-++-.+=.++..
T Consensus 90 ~~n~l~alA-------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt---- 158 (394)
T COG2814 90 VSNLLSALA-------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGT---- 158 (394)
T ss_pred HHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHH----
Confidence 777654332 468888877777888888777777777778776 68999999998776665433322221
Q ss_pred CChhHHHHHHHHHHHHHHHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHH--HHHH
Q 008514 171 PDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVII--IFTV 248 (563)
Q Consensus 171 ~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~~~ 248 (563)
. +.+..++-.++.. ..++
T Consensus 159 ------------------~------------------------------------------ig~~~GWR~~F~~ia~l~l 178 (394)
T COG2814 159 ------------------F------------------------------------------LGQLFGWRATFLAIAVLAL 178 (394)
T ss_pred ------------------H------------------------------------------HHHHhhHHHHHHHHHHHHH
Confidence 0 0111111111110 1111
Q ss_pred HHHHHhhcccccchhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHH
Q 008514 249 ILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQAR 328 (563)
Q Consensus 249 i~~~ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (563)
+.++.+.. .+| |++.+ ++++
T Consensus 179 l~~~~~~~---------------------~lP-~~~~~-----------------~~~~--------------------- 198 (394)
T COG2814 179 LALLLLWK---------------------LLP-PSEIS-----------------GSLP--------------------- 198 (394)
T ss_pred HHHHHHHH---------------------hCC-CccCC-----------------CCCC---------------------
Confidence 11111000 011 00000 0000
Q ss_pred HHhhhhhhhhhhhccCCCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHh-CCCchhH--HHHHHHH
Q 008514 329 LFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL-GYDNTHI--FVSMISI 405 (563)
Q Consensus 329 ~~~~~~~~~~~~~~~~~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~-g~~~~~~--~Vsl~si 405 (563)
.+-.+..+.+|++.-|..+++.++..+..-+...=+.|+.++. |.+.... ..-++++
T Consensus 199 --------------------~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv 258 (394)
T COG2814 199 --------------------GPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGI 258 (394)
T ss_pred --------------------cchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHH
Confidence 0011235689999999999999999999999999999999985 6676543 6678999
Q ss_pred HHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh-cC-chhHHHHHHHHHhhhhhhcchhHHHHHHhhcc
Q 008514 406 WNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GW-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGL 483 (563)
Q Consensus 406 ~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~-~~-~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~ 483 (563)
+..+|-++.|.++|| +. |... ....+++++..+.+.. .. +........+.|++.+........-.+| .-+
T Consensus 259 ~~~~Gn~~gGrl~dr-~~-----~~~l-~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p 330 (394)
T COG2814 259 AGFIGNLLGGRLADR-GP-----RRAL-IAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAP 330 (394)
T ss_pred HHHHHHHHHhhhccc-cc-----hhHH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCC
Confidence 999999999999998 33 2222 2233333333333332 22 2233344455677777666667777777 444
Q ss_pred Ccc----hhhhhhhhhchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008514 484 KKF----GALYNFLTLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 548 (563)
Q Consensus 484 k~f----g~nyg~~~~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r~ 548 (563)
++- +-|-..+.++..+|+.+.+...+ ...|....++.+.+.+++.++.++..+++||
T Consensus 331 ~~~~~a~sl~~aa~nlgia~GA~lGG~v~~--------~~g~~~~~~~~a~l~~~a~~~~~~~~~~~~~ 391 (394)
T COG2814 331 DAADLAGSLNVAAFNLGIALGAALGGLVLD--------ALGYAATGWVGAALLLLALLLALLSARKDRR 391 (394)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 553 34444566788888887775430 1348999999999999998888887776664
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.9e-10 Score=120.46 Aligned_cols=145 Identities=14% Similarity=0.143 Sum_probs=89.0
Q ss_pred HHHHhhcHHHHHHHHHHHhhccchheeeechHHH-HHH-hCCCch-hHHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchh
Q 008514 354 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQM-SQS-LGYDNT-HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 430 (563)
Q Consensus 354 ~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i-~~~-~g~~~~-~~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 430 (563)
+++.++++.||.+.+..++...... ..+...+. .+. ++.+.. ....++..+...++.+++|+++||+++|+.
T Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~---- 289 (437)
T TIGR00792 215 FKALFKNDQLLILCLAYLFYNLAFN-IKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKIL---- 289 (437)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHH-HHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH----
Confidence 4677899999988776665433322 22222221 121 221111 225566788999999999999999987432
Q ss_pred HHHHHHHHHHHHHHHHHhhc--CchhHHHHHHHHHhhhhhhcchhHHHHHHh-------hccCcchhhhhhhh----hch
Q 008514 431 VAMAVAQFVMAIGHIFLGMG--WPGAMYVGTLLIGLGYGAHWAIVPAAASEL-------FGLKKFGALYNFLT----LAN 497 (563)
Q Consensus 431 ~~l~~~~~~~~~~~lll~~~--~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~-------FG~k~fg~nyg~~~----~a~ 497 (563)
+ .....+.+++.+++... ....+.+...+.|+++|..+....++++|. .|.|+-|..+|+.. ++.
T Consensus 290 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~ 367 (437)
T TIGR00792 290 F--AGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQ 367 (437)
T ss_pred H--HHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHH
Confidence 2 22333334444333322 223455567788999999999999998887 46777888888654 455
Q ss_pred hhhhhhcc
Q 008514 498 PAGSIFTS 505 (563)
Q Consensus 498 ~vg~~l~~ 505 (563)
++|+.+.+
T Consensus 368 ~lg~~i~g 375 (437)
T TIGR00792 368 ALAGFLVG 375 (437)
T ss_pred HHHHHHHH
Confidence 55555554
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.6e-09 Score=111.60 Aligned_cols=149 Identities=10% Similarity=-0.006 Sum_probs=93.2
Q ss_pred cHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchh
Q 008514 353 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 430 (563)
Q Consensus 353 t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 430 (563)
+.++.+|++.||.+.+..++....-..+.+...+..++.|.++.. ...++..+....+++..|.+.||+++++
T Consensus 197 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~----- 271 (382)
T PRK11128 197 AWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARD----- 271 (382)
T ss_pred hHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-----
Confidence 457899999999887766665444334555666677788887653 2555666677777777777777765522
Q ss_pred HHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh-h----chhhhhhhc
Q 008514 431 VAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT-L----ANPAGSIFT 504 (563)
Q Consensus 431 ~~l~~~~~~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~-~----a~~vg~~l~ 504 (563)
.+.......+++.+++.. .++..+++..++.|+++|......-..+.+.- ..+.++.++... + +.++|+.+.
T Consensus 272 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ig~~i~ 349 (382)
T PRK11128 272 -LLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIAIMTVLS 349 (382)
T ss_pred -HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233334444444443332 33445666788889998876666666666653 345567677654 2 446677776
Q ss_pred cCCC
Q 008514 505 SMPR 508 (563)
Q Consensus 505 ~~~~ 508 (563)
+...
T Consensus 350 G~l~ 353 (382)
T PRK11128 350 GFLY 353 (382)
T ss_pred HHHH
Confidence 6543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-08 Score=107.20 Aligned_cols=379 Identities=15% Similarity=0.142 Sum_probs=228.8
Q ss_pred HHHHHHHHHHhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHHHHHHHHHHHHHH
Q 008514 18 VFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNFIGYGW 96 (563)
Q Consensus 18 ~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~ 96 (563)
+++.+++.+...-+.- =.+--|++|+.+++|+.|..++-.+.-.|=. .+++.|++.+|+|-|..+++|..+..+|..+
T Consensus 16 v~~t~lFfl~G~~~~l-~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~l 94 (422)
T COG0738 16 VLLTSLFFLWGFITCL-NDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAAL 94 (422)
T ss_pred HHHHHHHHHHHHHhhc-chhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4555555444333322 2455699999999999999998776555432 3889999999999999999999999999999
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhH
Q 008514 97 VWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHAPDHAN 175 (563)
Q Consensus 97 ~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~ 175 (563)
+|=+-..+ .+-..+.-.++-+.|.+...|++-.-.....|. +.-.=..++-+++||++.+-..+...+...+
T Consensus 95 F~pAa~~~----~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~--- 167 (422)
T COG0738 95 FWPAASSK----SYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSG--- 167 (422)
T ss_pred Hhhhhhhh----hHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh---
Confidence 88554332 233334455667889999999999999999975 4445567899999999988877775332100
Q ss_pred HHHHHHHHHHHHHHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhh
Q 008514 176 LIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLF 255 (563)
Q Consensus 176 fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~ 255 (563)
. + ...++++ ..+... .....-+..+...+..+.++..
T Consensus 168 -----~----------~---------~~~~~~~------------~~~~~~-------~~~~~v~~pYl~~~~~lvll~v 204 (422)
T COG0738 168 -----V----------A---------LTMSAAQ------------ILAIKG-------ADASSVQFPYLILAGLLVLLAV 204 (422)
T ss_pred -----h----------h---------hccCHHH------------HHHHHH-------HHHHhhhhHHHHHHHHHHHHHH
Confidence 0 0 0000000 000000 0000001111122222211111
Q ss_pred cccccchhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhh
Q 008514 256 IPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAE 335 (563)
Q Consensus 256 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (563)
. + ...+ .|+.++. +++ +
T Consensus 205 ~-----~---~~~k-----------~p~~~~~----------------~~~--~-------------------------- 221 (422)
T COG0738 205 L-----I---LLSK-----------LPDLQVA----------------APS--L-------------------------- 221 (422)
T ss_pred H-----H---Hhcc-----------CCcCCcc----------------ccc--c--------------------------
Confidence 0 0 0000 1100000 000 0
Q ss_pred hhhhhhccCCCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchh--HHHHHHHHHHhhhhh
Q 008514 336 GAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRV 412 (563)
Q Consensus 336 ~~~~~~~~~~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~--~~Vsl~si~n~~GRl 412 (563)
.++ .+.+..+++|++.+|+--+..++=.|.=.++=+.+.+.+.+ .|.+..+ .++|.+-.+-.+||.
T Consensus 222 --------~~~---~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRF 290 (422)
T COG0738 222 --------GAS---GSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRF 290 (422)
T ss_pred --------ccc---ccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 001 12266789999999999999999999999999999999998 6666554 389999999999996
Q ss_pred hhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhh
Q 008514 413 GGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNF 492 (563)
Q Consensus 413 ~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~ 492 (563)
+.-++-.|+.. .| .+.+.+ +...+-++.....+......+..++|+-.+..|...=++..+..| +|=+.-=++
T Consensus 291 ig~~lm~~~~~----~k-~Laf~a-~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~ 363 (422)
T COG0738 291 IGSALMSRIKP----EK-YLAFYA-LIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGL 363 (422)
T ss_pred HHHHHHHHhCH----HH-HHHHHH-HHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-cccccccee
Confidence 66655556644 22 222222 111111112222222344558888999999999999999999999 554444444
Q ss_pred hh---hchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHH
Q 008514 493 LT---LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAV 536 (563)
Q Consensus 493 ~~---~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~ 536 (563)
+. .|.++-|++.+... ||.|. ...+.+...+|.+-+
T Consensus 364 l~maivGGAiiP~l~G~i~-----d~~g~---~~~~~~~pllc~lyV 402 (422)
T COG0738 364 LVMAIVGGAIIPPLQGVIA-----DMFGI---QLTFLIVPLLCYLYV 402 (422)
T ss_pred eeeheecchHHHHHHHHHH-----Hhhhh---HHHHHHHHHHHHHHH
Confidence 33 35666677666544 33443 455555555555443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.4e-09 Score=111.64 Aligned_cols=123 Identities=14% Similarity=0.115 Sum_probs=85.1
Q ss_pred cccccccHHHHhhhCCChhhHHHHHHHHhhhh-hhhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 008514 33 YLFGSISPVIKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLW 111 (563)
Q Consensus 33 Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~-~~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~ 111 (563)
..+.--=|++.+.+|.|+.+.+.......+|. ...++.|.+.||+|+|.+++.+.+...++..... . . ++++
T Consensus 33 ~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~--~---a--~~~~ 105 (413)
T PRK15403 33 DLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATL--F---T--TSMT 105 (413)
T ss_pred HhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHH--H---c--CCHH
Confidence 33333334678899999999998533334444 4578999999999999999998877666554322 1 2 2466
Q ss_pred HHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHH
Q 008514 112 AMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILT 162 (563)
Q Consensus 112 ~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s 162 (563)
.+.+.-++.|.+.++..+........+||+ +|+.+.++......++..+-.
T Consensus 106 ~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 157 (413)
T PRK15403 106 QFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGP 157 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666776666555555666678886 478888888888777765543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.7e-09 Score=109.93 Aligned_cols=132 Identities=13% Similarity=0.115 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhh-hhhhcchhhhccchhHHHHHHHHHHHHHHH
Q 008514 16 WLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLVGALQNFIGY 94 (563)
Q Consensus 16 w~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~-~~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy 94 (563)
+..+..+.++.......+.+. .+++.+++|.++.++..+..+..++. .++++.|.+.||+|+|.+++++.+...++.
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~ 82 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFA--AIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGC 82 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHH
Confidence 445666666655544444333 34567788999999988766665555 458999999999999999999888776665
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHH
Q 008514 95 GWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGA 159 (563)
Q Consensus 95 ~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~ 159 (563)
...... + +. ...-++.|.+.++.+.+......+++| ++|+++.|+.-....++..
T Consensus 83 ~~~~~~-----~--~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~ 138 (393)
T PRK11195 83 LLMLFG-----I--HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAIL 138 (393)
T ss_pred HHHHHH-----H--HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 543211 1 11 122245678889999999999999998 5699999998766555443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-07 Score=103.86 Aligned_cols=148 Identities=11% Similarity=0.078 Sum_probs=93.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhcC----------chhHHHHHHHHHhhhhh
Q 008514 399 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW----------PGAMYVGTLLIGLGYGA 468 (563)
Q Consensus 399 ~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~----------~~~l~~~~~l~Gl~~G~ 468 (563)
+-++-+++..+.-.+.+++-+|+++|.. .+..+.+...+++++.+.+.... ...+.+...+.|++-+.
T Consensus 321 ~~s~n~i~iil~~p~~~~~~~~l~~r~~--~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~ 398 (500)
T PRK09584 321 YQALNPFWIMIGSPILAAIYNKMGDRLP--MPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM 398 (500)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhCcCCC--cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence 4445554444555555555567666543 33444555666666665543211 12566688899999999
Q ss_pred hcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhccCC----C-CCCCCcccc-CcccHHHHHHHHHHHHHHHHHHHHH
Q 008514 469 HWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMP----R-VDEPLKCEG-SICYFLTSMIMSGLCIVAVILSMIL 542 (563)
Q Consensus 469 ~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~~~----~-~~~~~~C~G-~~cy~~~f~i~~~~~~~~~~l~l~l 542 (563)
.......++.+.-..+.-|+-.|+.+++.++|+.+.++. . +....+... .+-|...|...+.++++..++.+++
T Consensus 399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~ 478 (500)
T PRK09584 399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLT 478 (500)
T ss_pred HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998899999999887777777766522 1 111111111 1238889988887776655555555
Q ss_pred Hhhhhh
Q 008514 543 VHRTTN 548 (563)
Q Consensus 543 ~~R~r~ 548 (563)
.++.+|
T Consensus 479 ~~~~~k 484 (500)
T PRK09584 479 APKLNR 484 (500)
T ss_pred HHHHHH
Confidence 555554
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.9e-09 Score=112.24 Aligned_cols=148 Identities=18% Similarity=0.212 Sum_probs=106.0
Q ss_pred hhccchHHHHHHHHHHHHhcCcc-cccccccHHHHhhhCCChhhHHHH-HHHHhhhhhhhhcchhhhccchhHHHHHHHH
Q 008514 10 SFFNNRWLVFVAAMWIQSCAGIG-YLFGSISPVIKSSLNYNQKQIARL-GVAKDLGDSVGFLAGSLCEVLPIWGALLVGA 87 (563)
Q Consensus 10 ~~~~~Rw~~l~a~~~i~l~~Gt~-Y~fS~ys~~Lk~~lg~sq~~l~~i-~~a~~vG~~~gi~~G~l~D~~gp~~~~~iG~ 87 (563)
+++++||+.|++..+.+.+.|-. -.|+..++...+-|| |.+...+. -+...+..-+|+++=++.||+|-|.++++|+
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt 116 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT 116 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence 68999999999999999988876 456777777788888 55545554 3444455567888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHH--HHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhh--hhHHHH
Q 008514 88 LQNFIGYGWVWLIVTGRAPVLPLW--AMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAG--LGGAIL 161 (563)
Q Consensus 88 ~~~~~Gy~~~~l~~~g~i~~~s~~--~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~G--LSa~i~ 161 (563)
++..+|..+=-.+..-.+++ .+| ++..-..+.+..+-++..-+-+-+.-||| |+|..|..+ +.+| ||.++-
T Consensus 117 ~ln~iGa~Ir~iss~p~v~~-~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~--~v~~n~LGvavg 192 (480)
T KOG2563|consen 117 VLNGIGAWIRLISSLPFVPP-LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVL--GVMGNPLGVAVG 192 (480)
T ss_pred HHHHHHHHHhhhccCccccc-cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhH--HHhcchHHHHHH
Confidence 99999987533333333332 345 32335566777777777777788999995 678776554 3344 665443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-07 Score=103.70 Aligned_cols=391 Identities=14% Similarity=0.099 Sum_probs=210.5
Q ss_pred ccHHHHhhhC--CChhhHHHH----HHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH
Q 008514 38 ISPVIKSSLN--YNQKQIARL----GVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPL 110 (563)
Q Consensus 38 ys~~Lk~~lg--~sq~~l~~i----~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~ 110 (563)
+.+.+.+++| .|.++++++ ..+-.+|..+ .+.+|.+.|++|+|..+++..++..++-.++.++..- .++
T Consensus 41 ~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~----~~~ 116 (485)
T KOG0569|consen 41 INETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSA----PSF 116 (485)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh----hhH
Confidence 3455667788 566666664 3444556655 4578999999999999998888877777665544322 245
Q ss_pred HHHHHHHHHhccCcchhhhhHHHHHHHhcCCC-CCcchhhhHhhhhhhHHHHHHHHH-Hhc-CCChhHHHHHHHHHHHHH
Q 008514 111 WAMCILIFVGNNGETYFNTAALVSCVQNFPKS-RGPVVGILKGFAGLGGAILTQVYT-MIH-APDHANLIFMVAVGPAMV 187 (563)
Q Consensus 111 ~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~~-RG~~~Gl~~a~~GLSa~i~s~i~~-~~f-~~~~~~fll~la~~~~~v 187 (563)
.++.+-=++.|..++.......+--..-=|++ ||.+.-+.--++.++-.+-.++.. .++ .+|...+++....+|.++
T Consensus 117 e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~ 196 (485)
T KOG0569|consen 117 EMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALL 196 (485)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHH
Confidence 55554456677777766556666666666976 999887777666666544434432 344 345567888887777777
Q ss_pred HHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhccc
Q 008514 188 VIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFF 267 (563)
Q Consensus 188 ~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~ 267 (563)
.++..+++- + + ++ |++.+ .-+.+++-+ .+
T Consensus 197 ~l~~l~~~P--E--------S-Pk-------------~Ll~~-----k~~~~~A~~-sl--------------------- 225 (485)
T KOG0569|consen 197 QLALLPFLP--E--------S-PK-------------YLLIK-----KGDEEEARK-AL--------------------- 225 (485)
T ss_pred HHHHHhcCC--C--------C-cc-------------hHHHH-----cCCHHHHHH-HH---------------------
Confidence 776665431 1 1 11 11110 000111100 00
Q ss_pred cCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCC
Q 008514 268 LERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPH 347 (563)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 347 (563)
..++..++++. +.|+.. . +.++.+..+
T Consensus 226 ---------~~y~G~~~~~~------~~e~~~-------------------~------------------e~~~~~~~~- 252 (485)
T KOG0569|consen 226 ---------KFYRGKEDVEA------EIEEML-------------------R------------------EIEEEELEK- 252 (485)
T ss_pred ---------HHHhCCCcchh------HHHHHH-------------------H------------------HHHHhcccc-
Confidence 00000000000 000000 0 000000001
Q ss_pred cCCCCcHHHHhhcHH----HHHHHHHHHhhccchheeee-chHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhh
Q 008514 348 RGEDFTLTQALIKAD----FWLIFFSLLLGSGSGLTVID-NLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEI 420 (563)
Q Consensus 348 ~~~~~t~~~~l~s~~----Fwll~~~~~~~~g~gl~~i~-n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~ 420 (563)
.++.+++|++++++ .++.....++...+|...+. ..-.|.++.|.+..++ .-...++.|....+++.++.||
T Consensus 253 -~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~ 331 (485)
T KOG0569|consen 253 -KKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR 331 (485)
T ss_pred -ccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 13567888887643 45566666666788877665 4556888889887643 4457889999999999999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHHHH-----h--hcCchhH---HHHHHHHHhhhhhhcchh-HHHHHHhhccCcchhh
Q 008514 421 IVRDYAYPRPVAMAVAQFVMAIGHIFL-----G--MGWPGAM---YVGTLLIGLGYGAHWAIV-PAAASELFGLKKFGAL 489 (563)
Q Consensus 421 ~~~~~~~~r~~~l~~~~~~~~~~~lll-----~--~~~~~~l---~~~~~l~Gl~~G~~~~l~-p~i~se~FG~k~fg~n 489 (563)
++| ||..+..... +.+..+++ . ...+..- ..+..+..+.|+.-.+-. ..+++|+|...+=++-
T Consensus 332 ~gR-----RpLll~~~~~-~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa 405 (485)
T KOG0569|consen 332 LGR-----RPLLLISLSL-MAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAA 405 (485)
T ss_pred cCC-----cHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHH
Confidence 988 4444332222 22222111 1 1111111 223333344555544433 4578999998875555
Q ss_pred hhhhhhchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008514 490 YNFLTLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 548 (563)
Q Consensus 490 yg~~~~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r~ 548 (563)
..+....+-+..++-+.....-. +-.|. ..|++.++.|++..+..+...--||+
T Consensus 406 ~s~~~~~~w~~~fiv~~~fp~l~-~~~g~----~~filF~i~~~~~~i~~~~~lPETkg 459 (485)
T KOG0569|consen 406 QSVATAVNWLSNFIVGFAFPPLQ-NVIGP----YVFILFVIPLAIFLIYLYRYLPETKG 459 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhcc----hhhHHHHHHHHHHHHHHHHhCcccCC
Confidence 55444333333332221110000 00232 45666666666666666666666774
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-06 Score=96.36 Aligned_cols=119 Identities=15% Similarity=0.111 Sum_probs=84.9
Q ss_pred cccHHHHhhhCCChhhHHHH-HHHHhhhhhhhhcchhhhcc-chhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHH
Q 008514 37 SISPVIKSSLNYNQKQIARL-GVAKDLGDSVGFLAGSLCEV-LPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMC 114 (563)
Q Consensus 37 ~ys~~Lk~~lg~sq~~l~~i-~~a~~vG~~~gi~~G~l~D~-~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~ 114 (563)
....-+++.+|+++++.+.+ +....+.....+++|++.|| +|+|.++++|.+...+|+....+. . . +...+.
T Consensus 36 ~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~--~---~-~~~ll~ 109 (489)
T PRK10207 36 ILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS--L---L-KPDLIF 109 (489)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh--c---c-chhHHH
Confidence 44455788899999999886 44444544557789999999 899999999999999999876533 1 1 112233
Q ss_pred HHHHHhccCcchhhhhHHHHHHHhcCCC---CCcchhhhHhhhhhhHHHH
Q 008514 115 ILIFVGNNGETYFNTAALVSCVQNFPKS---RGPVVGILKGFAGLGGAIL 161 (563)
Q Consensus 115 ~~~~l~g~g~~~~~ta~l~t~~k~FP~~---RG~~~Gl~~a~~GLSa~i~ 161 (563)
+...+.|.|.+...........+.||++ |+.+-++.-....+++++-
T Consensus 110 ~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g 159 (489)
T PRK10207 110 IALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLIS 159 (489)
T ss_pred HHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHH
Confidence 3444556788877777778888999743 4667777766777776543
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.3e-08 Score=105.67 Aligned_cols=325 Identities=15% Similarity=0.148 Sum_probs=183.1
Q ss_pred HHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccchh-HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 008514 42 IKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPI-WGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFV 119 (563)
Q Consensus 42 Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp-~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l 119 (563)
+++.++....|++.+.+..-+|=. +.+|+|++.||+++ +.....+.+...++++..| + .++|.+++.-++
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~------~--~s~~~~ialr~l 143 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA------V--HSFPGLIALRFL 143 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH------H--hhhHHHHHHHHH
Confidence 778899999999998776666664 47899999999995 4444444444444444332 1 246777665555
Q ss_pred hccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhhheeeccc
Q 008514 120 GNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIRPV 198 (563)
Q Consensus 120 ~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~ 198 (563)
.|.-++....+.+...-.||. ++||+..|+.-+.-++|+.+=+.|..++++=|..
T Consensus 144 lGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~------------------------ 199 (495)
T KOG2533|consen 144 LGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGS------------------------ 199 (495)
T ss_pred HHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC------------------------
Confidence 566666666788888889995 6899999999999999998888887765420000
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhccccCCCChhhhhh
Q 008514 199 GGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEAL 278 (563)
Q Consensus 199 ~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~~~~~~~~~~~~ 278 (563)
... ..-.+.+.+. + ....+.. +...+ +++. +|++...
T Consensus 200 -----~~~---~gW~~~FiI~---G---------------------~i~~~~g--i~~f~-------~lp~--~P~~~~f 236 (495)
T KOG2533|consen 200 -----GGL---AGWRWLFIIE---G---------------------VITLVLG--IVVFF-------FLPD--NPSKAWF 236 (495)
T ss_pred -----CCc---CCceeehhHH---H---------------------HHHHHHH--heEEE-------EecC--Chhhccc
Confidence 000 0000111110 0 0000000 11111 1211 1111100
Q ss_pred cCCCCCCCCCCCCCcchhhh-hcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCCcCCCCcHHHH
Q 008514 279 LSKPENMEPGKSNQETDEVI-LSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQA 357 (563)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~t~~~~ 357 (563)
+. + +++.. +++.++++ +.+...+ .+-..++|+
T Consensus 237 l~-----~-------~ek~~~~~~~~~~~----------------------------------~~~~~~~-~~~~~~~~a 269 (495)
T KOG2533|consen 237 LT-----D-------EEKELVVERLRESP----------------------------------SGGIENK-FKWKGFKEA 269 (495)
T ss_pred cc-----h-------HHHHHHHHHHHhcc----------------------------------CCCcccc-cCHHHHHHH
Confidence 00 0 00000 00000000 0000000 123567899
Q ss_pred hhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHH
Q 008514 358 LIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMA 434 (563)
Q Consensus 358 l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~ 434 (563)
++++..|.+.+..++.....-.+.+-+..+.++ .|++..++ +-..+.+.+.+|=++.|++|||+.. -...|..+..
T Consensus 270 ~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~-~~~~~~~~~~ 348 (495)
T KOG2533|consen 270 LKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKT-IFARRLLFIV 348 (495)
T ss_pred HhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhh-hHHHHHHHHH
Confidence 999999999999999888777777778888888 45665433 5567889999999999999999741 0112333445
Q ss_pred HHHHHHHHHHHHHhhcC-chhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh
Q 008514 435 VAQFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT 494 (563)
Q Consensus 435 ~~~~~~~~~~lll~~~~-~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~ 494 (563)
..++...+++..+.... ....+. ++-+|......+..+.+.+=.++..-|++-+.
T Consensus 349 ~~~~~~~~g~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~ 404 (495)
T KOG2533|consen 349 FLCLYAIIGAISLLAAAVLPGAYG-----AFLIGPYGLIATAIIALSWTSANLAGNTKALT 404 (495)
T ss_pred HHHHHHHHHHHHHHhhccchHHhH-----HHHhcchhhHHHHHHHHhhccccccchHHhHH
Confidence 55566666644333222 222221 12222333344555666666666777776543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.4e-08 Score=102.98 Aligned_cols=171 Identities=12% Similarity=0.051 Sum_probs=107.7
Q ss_pred HHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchhH--HHHHHH-HHHhhhhhhhhhhhhhhhhhcCCchh
Q 008514 354 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMIS-IWNFLGRVGGGYFSEIIVRDYAYPRP 430 (563)
Q Consensus 354 ~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~~--~Vsl~s-i~n~~GRl~~G~lsD~~~~~~~~~r~ 430 (563)
.++.+|++.+|.+....++...+-........+..++.|++++++ ..++.+ +...+|.+..|++.||+++++..
T Consensus 201 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l--- 277 (390)
T TIGR02718 201 LFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTF--- 277 (390)
T ss_pred HHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH---
Confidence 467888898888777666655544444455677888899987754 444444 46778999999999999874321
Q ss_pred HHHHHHHHHHHHH-HHHHh--h----cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhcc-Ccchhhhhhhh----hchh
Q 008514 431 VAMAVAQFVMAIG-HIFLG--M----GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGL-KKFGALYNFLT----LANP 498 (563)
Q Consensus 431 ~~l~~~~~~~~~~-~lll~--~----~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~-k~fg~nyg~~~----~a~~ 498 (563)
. ....+..+. .+.+. . ..+..++....+.+++.|..+..+.+.+.+..+. |+.|+.+++.. ++..
T Consensus 278 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~ 354 (390)
T TIGR02718 278 -I--LGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGEL 354 (390)
T ss_pred -H--HHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHH
Confidence 1 111111111 11111 1 1111233344455778888888888888888887 77788888754 5666
Q ss_pred hhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHH
Q 008514 499 AGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVIL 538 (563)
Q Consensus 499 vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l 538 (563)
+||.+.+...+ .-.|+..|.+.+.+.+++.++
T Consensus 355 ~g~~~~G~l~~--------~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 355 IASSIAGYLTD--------RFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHH--------HHccHHHHHHHHHHHHHHHHH
Confidence 66666554330 013888998887776666543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.7e-06 Score=89.68 Aligned_cols=126 Identities=11% Similarity=0.038 Sum_probs=89.3
Q ss_pred ccccHHHHhh--hCCChhhHHHH-HHHHhhhhhhhhcchhhhcc-chhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 008514 36 GSISPVIKSS--LNYNQKQIARL-GVAKDLGDSVGFLAGSLCEV-LPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLW 111 (563)
Q Consensus 36 S~ys~~Lk~~--lg~sq~~l~~i-~~a~~vG~~~gi~~G~l~D~-~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~ 111 (563)
+....-+.++ +|+|+.|...+ +.....+....+++|.+.|| +|+|.++.+|.+...+|+.++.+. + +++
T Consensus 31 ~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~-----~--~~~ 103 (475)
T TIGR00924 31 GILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS-----I--YPD 103 (475)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc-----c--cHh
Confidence 3344456777 99999999996 44444444557789999999 799999999999999998765421 1 244
Q ss_pred HHHHHHHHhccCcchhhhhHHHHHHHhcCC----CCCcchhhhHhhhhhhHHHHHHHHHHh
Q 008514 112 AMCILIFVGNNGETYFNTAALVSCVQNFPK----SRGPVVGILKGFAGLGGAILTQVYTMI 168 (563)
Q Consensus 112 ~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~----~RG~~~Gl~~a~~GLSa~i~s~i~~~~ 168 (563)
.+.+...+.|.|.+.+..+......++||+ +|+.+.++.-....+++++=..+...+
T Consensus 104 ~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l 164 (475)
T TIGR00924 104 LIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVI 164 (475)
T ss_pred HHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHH
Confidence 444444455677787777777777899974 388888887777777776555444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-07 Score=101.52 Aligned_cols=145 Identities=10% Similarity=0.060 Sum_probs=84.9
Q ss_pred HHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchh---HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchh
Q 008514 354 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH---IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 430 (563)
Q Consensus 354 ~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~---~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 430 (563)
.++.+|++.||.+.+..++.... ....+..............+ .......+...++-+++++++||+++++..
T Consensus 222 ~~~~~~n~~~~~l~~~~~~~~~~-~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~--- 297 (444)
T PRK09669 222 LKLLLGNSQWRIMFIFNVVLLTA-VVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAF--- 297 (444)
T ss_pred HHHHhCCchHHHHHHHHHHHHHH-HHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH---
Confidence 46778999999987766543222 22222222222111111111 133344566778899999999999874422
Q ss_pred HHHHHHHHHHHH-HHHHHhh--cCchhHHHHHHHHHhhhhhhcchhHHHHHHhh-------ccCcchhhhhhhh----hc
Q 008514 431 VAMAVAQFVMAI-GHIFLGM--GWPGAMYVGTLLIGLGYGAHWAIVPAAASELF-------GLKKFGALYNFLT----LA 496 (563)
Q Consensus 431 ~~l~~~~~~~~~-~~lll~~--~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~F-------G~k~fg~nyg~~~----~a 496 (563)
... ..+..+ +..++.. .+...+++..++.|+++|+...+..++++|.. |.|.-|..|+... ++
T Consensus 298 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg 374 (444)
T PRK09669 298 -KWT--IVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLG 374 (444)
T ss_pred -HHH--HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHH
Confidence 211 111121 2212222 22334666778899999999999999999886 7777777887653 45
Q ss_pred hhhhhhhcc
Q 008514 497 NPAGSIFTS 505 (563)
Q Consensus 497 ~~vg~~l~~ 505 (563)
.++|+.+.+
T Consensus 375 ~alg~~i~g 383 (444)
T PRK09669 375 LAIGGAVVG 383 (444)
T ss_pred HHHHHHHHH
Confidence 555555544
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-08 Score=115.32 Aligned_cols=127 Identities=15% Similarity=0.072 Sum_probs=97.5
Q ss_pred cccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHH--hcCC------
Q 008514 35 FGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIV--TGRA------ 105 (563)
Q Consensus 35 fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~--~g~i------ 105 (563)
.+.=-++++++++++.+|..++..+.++|..+ .++.|.+.||++++..+.+|.++..+|-.++.+.- .|..
T Consensus 52 ~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~ 131 (633)
T TIGR00805 52 VNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTV 131 (633)
T ss_pred HHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccc
Confidence 34445789999999999999999999999865 78999999999998888899998888887754331 0000
Q ss_pred ----------------------------------C--CchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchh
Q 008514 106 ----------------------------------P--VLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVG 148 (563)
Q Consensus 106 ----------------------------------~--~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~G 148 (563)
. ...++.+.+.-++.|.|.+..++........|+| ++|++..|
T Consensus 132 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~ 211 (633)
T TIGR00805 132 SSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIG 211 (633)
T ss_pred cccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHH
Confidence 0 0123344567788899999999999999999997 56999999
Q ss_pred hhHhhhhhhHHHH
Q 008514 149 ILKGFAGLGGAIL 161 (563)
Q Consensus 149 l~~a~~GLSa~i~ 161 (563)
+......++..+=
T Consensus 212 i~~~~~~iG~~lG 224 (633)
T TIGR00805 212 ILESIAVFGPAFG 224 (633)
T ss_pred HHHHHHHhhhHHH
Confidence 9877777766433
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-07 Score=103.45 Aligned_cols=146 Identities=11% Similarity=0.064 Sum_probs=83.6
Q ss_pred HHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchhH-HHHH-HHHHHhhhhhhhhhhhhhhhhhcCCchh
Q 008514 354 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTHI-FVSM-ISIWNFLGRVGGGYFSEIIVRDYAYPRP 430 (563)
Q Consensus 354 ~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~~-~Vsl-~si~n~~GRl~~G~lsD~~~~~~~~~r~ 430 (563)
.++.+|++.|+.+.++.++....-...........++ +|.++... ...+ ..+...++.++++.++||+++++ .
T Consensus 221 ~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~----~ 296 (448)
T PRK09848 221 LQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKN----T 296 (448)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH----H
Confidence 4678899999998877666544333332222223333 34433322 2122 23456677888888888886632 2
Q ss_pred HHHHHHHHHHHHHHHHHhhcC---chhHHHHHHHHHhhhhhhcchhHHHHHHhh-------ccCcchhhhhhhh----hc
Q 008514 431 VAMAVAQFVMAIGHIFLGMGW---PGAMYVGTLLIGLGYGAHWAIVPAAASELF-------GLKKFGALYNFLT----LA 496 (563)
Q Consensus 431 ~~l~~~~~~~~~~~lll~~~~---~~~l~~~~~l~Gl~~G~~~~l~p~i~se~F-------G~k~fg~nyg~~~----~a 496 (563)
+ .+...+..++.+++.... ...++++..+.|++.|..+....++++|.= |.|+-|..+|+.. ++
T Consensus 297 ~--~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg 374 (448)
T PRK09848 297 F--LIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCG 374 (448)
T ss_pred H--HHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHH
Confidence 2 223334444444433322 223445667788988888888888876653 5566788887754 45
Q ss_pred hhhhhhhcc
Q 008514 497 NPAGSIFTS 505 (563)
Q Consensus 497 ~~vg~~l~~ 505 (563)
.++|+.+.+
T Consensus 375 ~aig~~i~g 383 (448)
T PRK09848 375 QAIGGSIPA 383 (448)
T ss_pred HHHHHHHHH
Confidence 555554444
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-07 Score=102.52 Aligned_cols=144 Identities=11% Similarity=0.097 Sum_probs=84.3
Q ss_pred HHHhhcHHHHHHHHHHHhhccchheeeechHH-HHHHhCCCch--hHHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhH
Q 008514 355 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQ-MSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 431 (563)
Q Consensus 355 ~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~-i~~~~g~~~~--~~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~ 431 (563)
+..++++.|+.+.++.++...... ..+.... ..+....++. ....++.++...++-+++++++||+++|+..
T Consensus 225 ~~~~~n~~~~~ll~~~~~~~~~~~-~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~---- 299 (473)
T PRK10429 225 ALIYKNDQLSCLLGMALAYNIASN-IINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILW---- 299 (473)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHH-HHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH----
Confidence 445688888887776655543222 2221111 1111111211 1244555678888999999999999885432
Q ss_pred HHHHHHHHHHHHHHHH-----hh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHh-------hccCcchhhhhhhh----
Q 008514 432 AMAVAQFVMAIGHIFL-----GM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASEL-------FGLKKFGALYNFLT---- 494 (563)
Q Consensus 432 ~l~~~~~~~~~~~lll-----~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~-------FG~k~fg~nyg~~~---- 494 (563)
. ....+.+++.+.+ .. .....+.+..++.|++.|..+.+.+++++|. .|.|+-|..|+...
T Consensus 300 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K 377 (473)
T PRK10429 300 A--GASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVK 377 (473)
T ss_pred H--HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHH
Confidence 2 1122222222221 11 1123455677888999999999999999998 78888888888754
Q ss_pred hchhhhhhhcc
Q 008514 495 LANPAGSIFTS 505 (563)
Q Consensus 495 ~a~~vg~~l~~ 505 (563)
++.++|+.+.+
T Consensus 378 ~~~al~~~i~g 388 (473)
T PRK10429 378 GGSAFAAFFIG 388 (473)
T ss_pred HHHHHHHHHHH
Confidence 34555554444
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.6e-06 Score=88.87 Aligned_cols=363 Identities=14% Similarity=0.116 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHhcCcc-cccccccHHHHhhhCCChhhHHHHHHH-HhhhhhhhhcchhhhccchhHHHHHHHHHHHHHH
Q 008514 16 WLVFVAAMWIQSCAGIG-YLFGSISPVIKSSLNYNQKQIARLGVA-KDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIG 93 (563)
Q Consensus 16 w~~l~a~~~i~l~~Gt~-Y~fS~ys~~Lk~~lg~sq~~l~~i~~a-~~vG~~~gi~~G~l~D~~gp~~~~~iG~~~~~~G 93 (563)
|+.+++-+++..-.=+. -+-+--=+++++.+|.|-++..++++. ....+.++++...+..|+|++-.+..+-++..+|
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G 90 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG 90 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44444444443322221 223333457788999999999987443 3344467888999999999999999999988777
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCCCCCcchhhhHhhhhhhHHHHHHHHHHhcCCCh
Q 008514 94 YGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDH 173 (563)
Q Consensus 94 y~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~ 173 (563)
..+ ... .+.+.+..-..++|.|.+..|.=-=.-.=|+||+|-|..+|+-..-.++++++-+.+..
T Consensus 91 ~~i-----R~~---~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lav------- 155 (395)
T COG2807 91 ILI-----RSL---GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAV------- 155 (395)
T ss_pred HHH-----Hhc---ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhh-------
Confidence 753 111 13455666667777777765442222233899999999999988888888777653332
Q ss_pred hHHHHHHHHHHHHHHHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHH
Q 008514 174 ANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVL 253 (563)
Q Consensus 174 ~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l 253 (563)
|... +..+...+. ..++.-.++-
T Consensus 156 -----------------------pla~---------------------------------~~~gW~~aL-~~WAl~allA 178 (395)
T COG2807 156 -----------------------PLAQ---------------------------------HSGGWRGAL-GFWALLALLA 178 (395)
T ss_pred -----------------------HHHH---------------------------------hhccHHHHH-HHHHHHHHHH
Confidence 0000 000000000 0111111100
Q ss_pred hhcccccchhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhh
Q 008514 254 LFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAA 333 (563)
Q Consensus 254 l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (563)
++. |.+...+ + +.. +++
T Consensus 179 l~~---------WlPq~~r--------~---~~~----------------~~~--------------------------- 195 (395)
T COG2807 179 LLI---------WLPQALR--------E---QAA----------------SIA--------------------------- 195 (395)
T ss_pred HHH---------Hhhhccc--------c---ccc----------------ccc---------------------------
Confidence 111 2211000 0 000 000
Q ss_pred hhhhhhhhccCCCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchhH--HHHHHHHHHhhhh
Q 008514 334 AEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGR 411 (563)
Q Consensus 334 ~~~~~~~~~~~~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GR 411 (563)
.+ ..+-...+|++.=|.+-+-|-+.+..--.++.=+.+|..|.|+++.+. .+|+..+.....-
T Consensus 196 ------~~---------~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ 260 (395)
T COG2807 196 ------TK---------LVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTA 260 (395)
T ss_pred ------cc---------cccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHH
Confidence 00 011124678999999988887777777778889999999999998764 8999999988888
Q ss_pred hhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcc-hhhh
Q 008514 412 VGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKF-GALY 490 (563)
Q Consensus 412 l~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~f-g~ny 490 (563)
+..-++.+|. ++ .|++. ....+++.++..-+...+....++-.++.|++.|+.|++.=.++.+..-..+- ++.-
T Consensus 261 ll~P~la~R~--~n--~r~~~-~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LS 335 (395)
T COG2807 261 LLIPLLARRS--KN--QRPLV-VLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALS 335 (395)
T ss_pred HHHHHHHHHh--cc--cchHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHH
Confidence 8888888873 22 33443 33333344443322222211222236999999999999998888877654442 1222
Q ss_pred h----hhhhchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHH
Q 008514 491 N----FLTLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 540 (563)
Q Consensus 491 g----~~~~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l 540 (563)
| +=++=.+.||++++..+ |-+|+|+.++...+...++..+..+
T Consensus 336 gmaQg~GYllAa~GP~l~G~lh-------Da~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 336 GMAQGVGYLLAAFGPWLFGFLH-------DATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HHhhhhhHHHHhhhhhhHhHHH-------HhcCChHHHHHHHHHHHHHHHHHHh
Confidence 2 22344577888888665 2356699988877666554444433
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-07 Score=108.57 Aligned_cols=179 Identities=16% Similarity=0.148 Sum_probs=113.3
Q ss_pred HHHhhcHHHHHHHHHHHhhccch---heeeech-HHHHHHhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCc
Q 008514 355 TQALIKADFWLIFFSLLLGSGSG---LTVIDNL-GQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYP 428 (563)
Q Consensus 355 ~~~l~s~~Fwll~~~~~~~~g~g---l~~i~n~-~~i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~ 428 (563)
.++-.++..|.++++++++.... ..+++.+ .++.++.|.+..+ ...+++.++..+|.+++|+++||++||+.
T Consensus 157 ~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~-- 234 (742)
T TIGR01299 157 QECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQC-- 234 (742)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH--
Confidence 44445677887776665554322 2223333 3344567887654 37789999999999999999999988542
Q ss_pred hhHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhcc--
Q 008514 429 RPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTS-- 505 (563)
Q Consensus 429 r~~~l~~~~~~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~-- 505 (563)
+.+..++..++.++... .....+++.-.+.|++.|+.+.+.+.+++|++..++-|+.++++.+...+|..+.+
T Consensus 235 ----lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~l 310 (742)
T TIGR01299 235 ----LLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAM 310 (742)
T ss_pred ----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333334333332 23446777888999999999999999999999999999998887655444444332
Q ss_pred ------CCC-CCCCCccccCcccHHHHHHHHHHHHHHHHHH
Q 008514 506 ------MPR-VDEPLKCEGSICYFLTSMIMSGLCIVAVILS 539 (563)
Q Consensus 506 ------~~~-~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~ 539 (563)
... ............||..|++.+..+++++++.
T Consensus 311 a~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~ 351 (742)
T TIGR01299 311 AWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGAL 351 (742)
T ss_pred HHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 100 0000001122357888877766655554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-06 Score=95.31 Aligned_cols=147 Identities=18% Similarity=0.300 Sum_probs=99.5
Q ss_pred cHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCch-hHHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchh
Q 008514 353 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT-HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 430 (563)
Q Consensus 353 t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~-~~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 430 (563)
.+++.+|+++|+.++++.++......+..+......+. +|.+.. .....+..+...++-+++++++||+++++.+
T Consensus 217 ~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~--- 293 (428)
T PF13347_consen 217 SLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVY--- 293 (428)
T ss_pred chhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeeh---
Confidence 35788899999999888887644444434444444454 344422 3466678889999999999999999886643
Q ss_pred HHHHHHHHHHHHHHHHHh-h--cCchhHHHHHHHHHhhhhhhcchhHHHHHHhh-------ccCcchhhhhhhh----hc
Q 008514 431 VAMAVAQFVMAIGHIFLG-M--GWPGAMYVGTLLIGLGYGAHWAIVPAAASELF-------GLKKFGALYNFLT----LA 496 (563)
Q Consensus 431 ~~l~~~~~~~~~~~lll~-~--~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~F-------G~k~fg~nyg~~~----~a 496 (563)
....++.+++.+++. . .+...+++..++.|+++|..+.+..++.+|.- |.|+-|..+++.. ++
T Consensus 294 ---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~ 370 (428)
T PF13347_consen 294 ---IIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIG 370 (428)
T ss_pred ---hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHH
Confidence 233333333433322 2 34557888999999999999999999999876 4667788888754 34
Q ss_pred hhhhhhhcc
Q 008514 497 NPAGSIFTS 505 (563)
Q Consensus 497 ~~vg~~l~~ 505 (563)
.++++.+.+
T Consensus 371 ~~la~~i~g 379 (428)
T PF13347_consen 371 QGLAGAIVG 379 (428)
T ss_pred HHHHHHHHH
Confidence 444444443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.9e-06 Score=89.38 Aligned_cols=129 Identities=13% Similarity=0.026 Sum_probs=99.5
Q ss_pred CcccccccccHHHHhhhCCChhh-HHHHHHHHhhhh-hhhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 008514 30 GIGYLFGSISPVIKSSLNYNQKQ-IARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPV 107 (563)
Q Consensus 30 Gt~Y~fS~ys~~Lk~~lg~sq~~-l~~i~~a~~vG~-~~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~ 107 (563)
----..|+-.|.|++.+|+|.+| .+.|..+...+- ..-+++|++.||+|+|.++.++.+.-.+-..++.+ .
T Consensus 40 e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f-----a-- 112 (511)
T TIGR00806 40 QFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL-----G-- 112 (511)
T ss_pred HhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH-----H--
Confidence 33445677788999999999999 777755555554 45889999999999999999988865555544322 1
Q ss_pred chHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHH
Q 008514 108 LPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYT 166 (563)
Q Consensus 108 ~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~ 166 (563)
.+++.|.+.-++-|.+.+... +......+||| ++||+++|+.-++.-+|.++-..+..
T Consensus 113 ~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~q 171 (511)
T TIGR00806 113 TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQ 171 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246777777777778888887 99999999998 56999999999998888877765553
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-10 Score=124.16 Aligned_cols=107 Identities=22% Similarity=0.207 Sum_probs=79.2
Q ss_pred hhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHhccCcchhh
Q 008514 51 KQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPV-LPLWAMCILIFVGNNGETYFN 128 (563)
Q Consensus 51 ~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~-~s~~~l~~~~~l~g~g~~~~~ 128 (563)
.+...+.....+|..+ +++.|.+.||+|+|.++.++.++..+|..+. ...+. .+++.+++.-++.|.|.+..+
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~R~~~G~~~g~~~ 120 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILI-----AFAPSYNNFWMLLIGRFLIGFGIGGAY 120 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccccccc
Confidence 4456677888888877 6689999999999999999999887887643 22221 145666666677788888777
Q ss_pred hhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHH
Q 008514 129 TAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILT 162 (563)
Q Consensus 129 ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s 162 (563)
+.........=| ++||....+.-.++.+|..+-.
T Consensus 121 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~ 155 (451)
T PF00083_consen 121 VVSPIYISEIAPPKHRGFLSSLFQLFWALGILLAS 155 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 776776667766 5699999998888877754443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.7e-06 Score=86.04 Aligned_cols=159 Identities=14% Similarity=0.105 Sum_probs=104.8
Q ss_pred HHhhcHHHHHHHHHHHhhccchheeeechHHHHHH---hCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchh
Q 008514 356 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS---LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 430 (563)
Q Consensus 356 ~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~---~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 430 (563)
+.+|++.+|+..+.+++-.|.-..+.+.+....++ .|+++.+ ..++.+..+..+||++.+.++||+++++ .
T Consensus 135 ~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~----~ 210 (310)
T TIGR01272 135 SAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR----Y 210 (310)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH----H
Confidence 46788999999888888888777777777777764 3676553 3789999999999999999999997633 2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh---hchhhhhhhccCC
Q 008514 431 VAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT---LANPAGSIFTSMP 507 (563)
Q Consensus 431 ~~l~~~~~~~~~~~lll~~~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~---~a~~vg~~l~~~~ 507 (563)
. .+...+.+++.+++..........+..++|++.+..+...-+...+.++ ++-++.-+++. ++..++|.+.+..
T Consensus 211 l--~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~-~~~~~asai~~~~~~Gg~i~P~l~G~l 287 (310)
T TIGR01272 211 L--AFNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALG-RHTSQGSGILCLAIVGGAIVPLLQGSL 287 (310)
T ss_pred H--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHHHHHHhcchHHHHHHHHH
Confidence 2 2222233333333322222223347778899999999998888889888 44455444432 4555666655533
Q ss_pred CCCCCCccccCcccHHHHHHHH
Q 008514 508 RVDEPLKCEGSICYFLTSMIMS 529 (563)
Q Consensus 508 ~~~~~~~C~G~~cy~~~f~i~~ 529 (563)
. | .. .++.+|++..
T Consensus 288 a-d----~~---g~~~a~~v~~ 301 (310)
T TIGR01272 288 A-D----CL---GIQLAFALPV 301 (310)
T ss_pred H-H----hc---cchHHHHHHH
Confidence 2 0 01 2677776443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.52 E-value=4e-05 Score=86.08 Aligned_cols=178 Identities=18% Similarity=0.174 Sum_probs=93.1
Q ss_pred chHHHHHHHHHHHHhcC--cccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHH
Q 008514 14 NRWLVFVAAMWIQSCAG--IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQN 90 (563)
Q Consensus 14 ~Rw~~l~a~~~i~l~~G--t~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~ 90 (563)
+|.+...+++.++.++. ..+..+.--+++-..+|=+ ++..+++++-.++... -++.|.+.|.+|+|..+++|.++.
T Consensus 40 ~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~ 118 (599)
T PF06609_consen 40 PRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLG 118 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Confidence 45555554554444433 1222222224566667665 4455566666666644 567999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCCC-CCcchhhhHhhhhhhHHHHHHHHHHhc
Q 008514 91 FIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKS-RGPVVGILKGFAGLGGAILTQVYTMIH 169 (563)
Q Consensus 91 ~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~~-RG~~~Gl~~a~~GLSa~i~s~i~~~~f 169 (563)
.+|..+. ...+ +.-.+..-..+.|.|.+......+. ...--|.| |+...++....+-.-..+-..+.+.+.
T Consensus 119 vvG~Iv~-----atA~--~~~~~iag~~l~GvgaG~~~~~~~~-isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~ 190 (599)
T PF06609_consen 119 VVGSIVC-----ATAQ--NMNTFIAGMVLYGVGAGVQELAALA-ISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA 190 (599)
T ss_pred HhHHHHh-----hcCC--cHHHHHHHHHHHHHhhHHHHHHHHH-HHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence 9998652 3332 3444444445555555544433333 33444754 876665544332221111122333343
Q ss_pred CCChhHHHHHH-HHHHHHHHHhhheeecccCC
Q 008514 170 APDHANLIFMV-AVGPAMVVIALMFIIRPVGG 200 (563)
Q Consensus 170 ~~~~~~fll~l-a~~~~~v~l~~~~~vr~~~~ 200 (563)
......+.+-+ .+...+..++.++|-+|++.
T Consensus 191 ~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~ 222 (599)
T PF06609_consen 191 AHSGWRWIFYIFIIWSGIALVLIFFFYFPPPR 222 (599)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 33333333322 33333333444555566553
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.4e-05 Score=86.28 Aligned_cols=184 Identities=16% Similarity=0.232 Sum_probs=127.5
Q ss_pred cHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHH-HhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCch
Q 008514 353 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 429 (563)
Q Consensus 353 t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r 429 (563)
|++++-|.++.+...++.++-.-.-.+++...+-.++ .+|+++.+. ..-+..+....|-+++|++.||++.|.+ |
T Consensus 273 t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~--~ 350 (477)
T PF11700_consen 273 TFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK--R 350 (477)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh--H
Confidence 5677777788877777766655433344444444444 479988764 5557888999999999999999977532 2
Q ss_pred hHHHHHHH--HHHHHHHHH-----HhhcCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhh----chh
Q 008514 430 PVAMAVAQ--FVMAIGHIF-----LGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL----ANP 498 (563)
Q Consensus 430 ~~~l~~~~--~~~~~~~ll-----l~~~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~----a~~ 498 (563)
.....+.. ++...+++- +....+..+|+..++.|+..|+..+.-=++.+|+=-..+=++-||+..+ +..
T Consensus 351 ~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~ 430 (477)
T PF11700_consen 351 TLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSW 430 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHH
Confidence 22222221 122222110 0123345799999999999999999999999999999999999998763 678
Q ss_pred hhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhh
Q 008514 499 AGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHR 545 (563)
Q Consensus 499 vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R 545 (563)
+||.+++... +-++..|.++.....+.++++++...+..+
T Consensus 431 lGPll~g~i~-------~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 431 LGPLLFGLIT-------DATGSQRYGFLFLLVLFLIGLILLFFVDVE 470 (477)
T ss_pred HHHHHHHHHH-------HHhCCchhHHHHHHHHHHHHHHHHhhccch
Confidence 8888888553 112458999999999998888777554443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.2e-06 Score=95.43 Aligned_cols=172 Identities=16% Similarity=0.252 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHhhccchheeeechHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHH
Q 008514 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF 438 (563)
Q Consensus 361 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~ 438 (563)
+.+|++++.+++......++...+..+.+++|.++.+. .++.+.+...++.+.+|.++||++||+. . .....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~----~--~~~~~ 83 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNI----F--FTAIV 83 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH----H--HHHHH
Confidence 46899999888877666667778888999999987653 6688888999999999999999988532 1 22233
Q ss_pred HHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhc----hhhhhhhccCCCCCCCC
Q 008514 439 VMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLA----NPAGSIFTSMPRVDEPL 513 (563)
Q Consensus 439 ~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a----~~vg~~l~~~~~~~~~~ 513 (563)
+..++.++... .+...+++.-++.|++.|..+......+.|++..++.++.+|+...+ ..+|+.+.+...+
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~---- 159 (471)
T PRK10504 84 LFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE---- 159 (471)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh----
Confidence 33444433333 33345677888999999999999999999999999999999887644 4444444332210
Q ss_pred ccccCcccHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008514 514 KCEGSICYFLTSMIMSGLCIVAVILSMILVHRT 546 (563)
Q Consensus 514 ~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~ 546 (563)
...|+..|.+...+++++.++......|.
T Consensus 160 ----~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 160 ----YASWHWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred ----hccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 12389999999888888777776655443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.46 E-value=7e-06 Score=86.53 Aligned_cols=108 Identities=23% Similarity=0.307 Sum_probs=83.6
Q ss_pred hCCChhhHHHHHHHHhhhh-hhhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCc
Q 008514 46 LNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGE 124 (563)
Q Consensus 46 lg~sq~~l~~i~~a~~vG~-~~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~ 124 (563)
++-.++|+.++=-.+.+-. ....+.|.+.||.|.|...++|....+..-.++ .+.+ +||.+.+.=.+-|.|+
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilF--afg~-----sy~~l~vAR~LQgvgs 173 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILF--AFGN-----SYPMLFVARSLQGVGS 173 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHH--HHcc-----hhHHHHHHHHHhhhhH
Confidence 4445556666533344444 458899999999999999999999876666553 2222 5787666778889999
Q ss_pred chhhhhHHHHHHHhcCCC--CCcchhhhHhhhhhhHHH
Q 008514 125 TYFNTAALVSCVQNFPKS--RGPVVGILKGFAGLGGAI 160 (563)
Q Consensus 125 ~~~~ta~l~t~~k~FP~~--RG~~~Gl~~a~~GLSa~i 160 (563)
.+++|+.+.-.++.||++ ||.|.|+..++.+||-.+
T Consensus 174 A~~~tsglamlAd~f~~d~er~~vmGialgfislG~lv 211 (464)
T KOG3764|consen 174 AFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLV 211 (464)
T ss_pred HHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhcccee
Confidence 999999999999999964 899999999999998533
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.9e-07 Score=95.71 Aligned_cols=172 Identities=12% Similarity=0.061 Sum_probs=114.5
Q ss_pred cHHHHHHHHHHHhhccchheeeechHHHHH-HhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHH
Q 008514 360 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 436 (563)
Q Consensus 360 s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~ 436 (563)
.+++|.+.+..++....--++..-+.+..+ ++|.++.+. .+++..+...++++.+|.++||++||+. +...
T Consensus 6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~------~~~~ 79 (395)
T PRK10054 6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRY------MLLA 79 (395)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchh------HHHH
Confidence 456898888777765555555555666554 579887654 7788888999999999999999988532 2223
Q ss_pred HHHHHHHHHHHhhc-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh----hchhhhhhhccCCCCCC
Q 008514 437 QFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMPRVDE 511 (563)
Q Consensus 437 ~~~~~~~~lll~~~-~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~----~a~~vg~~l~~~~~~~~ 511 (563)
..+..++.+++... +...+++...+.|.+++......+..++|.++.++.++.+|+.. ++..+||.+.+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-- 157 (395)
T PRK10054 80 ITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-- 157 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 33344444444332 23334445566777778778888899999998888777777654 555666655443221
Q ss_pred CCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008514 512 PLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRT 546 (563)
Q Consensus 512 ~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~ 546 (563)
..|+..|.+.+.++++++++..+...|.
T Consensus 158 -------~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 158 -------QSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred -------hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1378899988888777766655544444
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00034 Score=77.44 Aligned_cols=129 Identities=16% Similarity=0.108 Sum_probs=81.0
Q ss_pred cccccccccH-HHHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccc-hhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 008514 31 IGYLFGSISP-VIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVL-PIWGALLVGALQNFIGYGWVWLIVTGRAPV 107 (563)
Q Consensus 31 t~Y~fS~ys~-~Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~-gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~ 107 (563)
+.|.+..+-+ -+.+++|+++++...+........+ ..+++|++.||+ |+|.++.+|.++..+|+.++. ..+. .
T Consensus 24 s~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~--~~~~--~ 99 (493)
T PRK15462 24 SFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLG--ASEI--H 99 (493)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH--Hhhc--c
Confidence 4455544433 4567799999999987444445544 467999999999 999999999999999987543 2111 1
Q ss_pred chHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC---CCCcchhhhHhhhhhhHHHHHHHH
Q 008514 108 LPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK---SRGPVVGILKGFAGLGGAILTQVY 165 (563)
Q Consensus 108 ~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~---~RG~~~Gl~~a~~GLSa~i~s~i~ 165 (563)
.....+...... .|.+...+..-....+.||+ +|+.+.++.-....+++.+-..+.
T Consensus 100 ~~~~~l~l~li~--iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~ 158 (493)
T PRK15462 100 PSFLYLSLAIIV--CGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIAC 158 (493)
T ss_pred hhHHHHHHHHHH--HhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHH
Confidence 111221222222 33343333333445788985 488888888777777665444443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.8e-05 Score=87.99 Aligned_cols=379 Identities=17% Similarity=0.143 Sum_probs=212.6
Q ss_pred hhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhh
Q 008514 51 KQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNT 129 (563)
Q Consensus 51 ~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~t 129 (563)
.+.++++....+|+.. .+++|++.|++|+|.+++++.+++.+|..+...+. +++.+..--++.|.|.|....
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~-------~~~~l~~GR~l~G~g~G~~~~ 161 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP-------SWYQLIVGRILTGLGVGGASV 161 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHhccchhhhhh
Confidence 3557888889999866 77899999999999999999999999998765442 466666667777888887654
Q ss_pred hHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHHHhhheeecccCCCCCCCC
Q 008514 130 AALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHAPD--HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRP 206 (563)
Q Consensus 130 a~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~--~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~ 206 (563)
.+-+-...-=|. .||..+.+..-.+. .+.++..+...+.+.+ .....+.++..|.++..++++++ | +.
T Consensus 162 ~~piy~sEiap~~~RG~l~~~~~l~~~-~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~-p-es------ 232 (513)
T KOG0254|consen 162 LAPVYISEIAPAHIRGTLVSLYQLFIT-IGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFL-P-ES------ 232 (513)
T ss_pred cchhhHhhcCChhhhHHHHHHHHHHHH-HHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhC-C-CC------
Confidence 444444444475 69999999888887 4445554444444443 46677777777777776664332 2 10
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhccccCCCChhhhhhcCCCCCCC
Q 008514 207 SDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENME 286 (563)
Q Consensus 207 ~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (563)
.+.. +-. -+.+++-. .+. .+ +.-.+++
T Consensus 233 ---p~~L-------------~~~------g~~~~a~~----~l~---------------~l------------~g~~~~~ 259 (513)
T KOG0254|consen 233 ---PRWL-------------IEK------GRLEEAKR----SLK---------------RL------------RGLSPED 259 (513)
T ss_pred ---hHHH-------------HHc------CChHHHHH----HHH---------------HH------------hCCCCcc
Confidence 1100 000 00000000 000 00 0000000
Q ss_pred CCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCCcCCCCcHH----HHhhcHH
Q 008514 287 PGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLT----QALIKAD 362 (563)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~t~~----~~l~s~~ 362 (563)
.+ + +.+....... .+. . ..+ .+..++ ...+++.
T Consensus 260 ~~------~-------------------------~~~~~~~~~~-~~~---~--~~~------~~~~~~~l~~~~~~~~~ 296 (513)
T KOG0254|consen 260 VE------V-------------------------ELELLKIKLL-VEA---E--VAE------GKASWGELFSPKVRKRL 296 (513)
T ss_pred hH------H-------------------------HHHHHHHHHH-Hhh---h--ccc------ccccHHHhcCcchHHHH
Confidence 00 0 0000000000 000 0 000 000111 2345566
Q ss_pred HHHHHHHHHhhccchheeeechHHHHHHhCCCch-hHHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHH
Q 008514 363 FWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT-HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMA 441 (563)
Q Consensus 363 Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~-~~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~ 441 (563)
++...+..+-....--.++.-..+|.++.|.+.. .....+.++.|.++-++..++.||++||. . +......+.
T Consensus 297 ~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~-----l-ll~s~~~m~ 370 (513)
T KOG0254|consen 297 IIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRK-----L-LLFGAAGMS 370 (513)
T ss_pred HHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHH-----H-HHHhHHHHH
Confidence 6666666666664446677788889999888754 44566788889999999999999997733 2 233334444
Q ss_pred HHHHHHh------hc----C--chhHHH-HHHHHHhhhhhhcchhHH-HHHHhhccCcchhhhhhhhhchhhhhhhccCC
Q 008514 442 IGHIFLG------MG----W--PGAMYV-GTLLIGLGYGAHWAIVPA-AASELFGLKKFGALYNFLTLANPAGSIFTSMP 507 (563)
Q Consensus 442 ~~~lll~------~~----~--~~~l~~-~~~l~Gl~~G~~~~l~p~-i~se~FG~k~fg~nyg~~~~a~~vg~~l~~~~ 507 (563)
++++++. .. . ...+.+ ...+.=.+|...++-.|. +.+|.|-+|.=++-.++....+-+..++....
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~ 450 (513)
T KOG0254|consen 371 ICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFF 450 (513)
T ss_pred HHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4443332 11 1 112222 333334467777777787 66999998876666665443333333322211
Q ss_pred CCCCCCccccCcccHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhh
Q 008514 508 RVDEPLKCEGSICYFLTSMIMSGLCIVAVI-LSMILVHRTTNVYS 551 (563)
Q Consensus 508 ~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~-l~l~l~~R~r~~~~ 551 (563)
.. ...+... ....|....+.+.+..+ ...+....||...-
T Consensus 451 ~~--~~~~~~~--~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sl 491 (513)
T KOG0254|consen 451 FP--FITEALG--IGGTFGYFGGICLLSLIIFVFFFVPETKGLTL 491 (513)
T ss_pred HH--HHHHhcc--ccchHHHHHHHHHHHHHHHheEEcccCCCCcH
Confidence 10 0011101 45677777777777777 56667777776554
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.2e-06 Score=91.74 Aligned_cols=143 Identities=13% Similarity=0.146 Sum_probs=102.4
Q ss_pred eeeechHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh-cCchhH
Q 008514 379 TVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAM 455 (563)
Q Consensus 379 ~~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~-~~~~~l 455 (563)
+....+.++.+++|.++++. .+++..+...++++..|.++||++||+. +.....+.+++.++... .+...+
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~------~~~~~~~~~~~~~~~~~~~~~~~l 111 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYV------VILFAVLLTLSCLLVSFANSFSLL 111 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHH------HHHHHHHHHHHHHHHHHHChHHHH
Confidence 33456778889999988754 7889999999999999999999988432 23334444445444433 334567
Q ss_pred HHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhh----chhhhhhhccCCCCCCCCccccCcccHHHHHHHHHH
Q 008514 456 YVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL----ANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGL 531 (563)
Q Consensus 456 ~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~----a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~ 531 (563)
++.-.+.|++.|..+...+.+++|+|..|+.++..++... +..+|+.+.+...+ .-.++..|++.+.+
T Consensus 112 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~--------~~gw~~~f~~~~~l 183 (394)
T PRK10213 112 LIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE--------LIGWRNVFNAAAVM 183 (394)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hcCHHHHHHHHHHH
Confidence 7788999999999999999999999999999998887764 33444444332210 12379999888765
Q ss_pred HHHH
Q 008514 532 CIVA 535 (563)
Q Consensus 532 ~~~~ 535 (563)
+++.
T Consensus 184 ~~~~ 187 (394)
T PRK10213 184 GVLC 187 (394)
T ss_pred HHHH
Confidence 5543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.3e-06 Score=88.60 Aligned_cols=169 Identities=14% Similarity=0.158 Sum_probs=114.8
Q ss_pred cHHHHHHHHHHHhhccch-heeeechHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHH
Q 008514 360 KADFWLIFFSLLLGSGSG-LTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 436 (563)
Q Consensus 360 s~~Fwll~~~~~~~~g~g-l~~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~ 436 (563)
++.++.+...+.+....+ .++......+.+++|.++.+. ..++..+.+.++.+.+|+++||++||+. +...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~------~~~~ 76 (385)
T TIGR00710 3 AKAFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPV------LLLG 76 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHH------HHHH
Confidence 344555555555544444 455566777888999887653 7889999999999999999999977432 2333
Q ss_pred HHHHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhc----hhhhhhhccCCCCCC
Q 008514 437 QFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLA----NPAGSIFTSMPRVDE 511 (563)
Q Consensus 437 ~~~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a----~~vg~~l~~~~~~~~ 511 (563)
..+..++.++... .....+.+...+.|++.|........++.|++..++-++.+|+.... ..+|+.+.+....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~-- 154 (385)
T TIGR00710 77 LFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV-- 154 (385)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4444445444433 33345677888999999999999999999999988888888876543 3444444332210
Q ss_pred CCccccCcccHHHHHHHHHHHHHHHHHHHHH
Q 008514 512 PLKCEGSICYFLTSMIMSGLCIVAVILSMIL 542 (563)
Q Consensus 512 ~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l 542 (563)
...|+..|.+.+.++++..++..+.
T Consensus 155 ------~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 155 ------WLSWHAIFAFLSLAGILLSALIFFI 179 (385)
T ss_pred ------HcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 1237889988887777666555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.37 E-value=2e-06 Score=94.73 Aligned_cols=165 Identities=17% Similarity=0.251 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhhccchheeeechHHHHHH---hCCCchh--HHHHHHHHHHhhhhhhhhhhhhh-hhhhcCCchhHHHH
Q 008514 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQS---LGYDNTH--IFVSMISIWNFLGRVGGGYFSEI-IVRDYAYPRPVAMA 434 (563)
Q Consensus 361 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~---~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~-~~~~~~~~r~~~l~ 434 (563)
+.+|.+++..++-..+--++..++....++ +|.+..+ ..++.+++...++++.+|+++|| ++||+. +.
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~------l~ 83 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT------MV 83 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH------HH
Confidence 447777777776555555566677777765 6777654 38899999999999999999999 777443 24
Q ss_pred HHHHHHHHHHHHHhhcC-chhHHHHHHHHHhhhhhhcchhHHHHHHhhccCc-------chhhhhhhhhchhhhhhhccC
Q 008514 435 VAQFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKK-------FGALYNFLTLANPAGSIFTSM 506 (563)
Q Consensus 435 ~~~~~~~~~~lll~~~~-~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~-------fg~nyg~~~~a~~vg~~l~~~ 506 (563)
....+.+++++++.... ...++++..+.|++.|......+++++|.|..++ ++.+|....+|..+|+.+.+.
T Consensus 84 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~ 163 (475)
T TIGR00924 84 LGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGV 163 (475)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHH
Confidence 44455666665555433 3456677888999999999999999999997643 344444455677777776654
Q ss_pred CCCCCCCccccCcccHHHHHHHHHHHHHHHHHH
Q 008514 507 PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILS 539 (563)
Q Consensus 507 ~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~ 539 (563)
..+ .-+|+..|.+.+..++++++..
T Consensus 164 l~~--------~~g~~~~f~~~~~~~~~~~l~~ 188 (475)
T TIGR00924 164 IAE--------NYGYHVGFNLAAVGMVIGLLTF 188 (475)
T ss_pred HHH--------hcChHHHHHHHHHHHHHHHHHH
Confidence 321 1249999999876666654443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00012 Score=78.97 Aligned_cols=149 Identities=16% Similarity=0.202 Sum_probs=90.9
Q ss_pred HHHHhhcHHHHHHHHHHHhhccchheeeechHH-HHHHhC-CCchhHHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhH
Q 008514 354 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQ-MSQSLG-YDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 431 (563)
Q Consensus 354 ~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~-i~~~~g-~~~~~~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~ 431 (563)
..+++|+++++..++..++. +......++..+ ..+++| .+... .-.+.+ .+.+.-+..=.+++|+.+|.+..+
T Consensus 200 ~~~llk~~~~~~Fll~~~l~-~~~~~~~~~f~~~yl~~~gg~~~~~-~g~~~~-l~~~aEi~~f~~~~~~~~r~g~~~-- 274 (400)
T PF03825_consen 200 ALKLLKNPRFLVFLLAAFLI-GISHAAYYTFFSIYLQELGGYSGST-IGILWA-LGVVAEIPFFFFSGRFLKRFGIKW-- 274 (400)
T ss_pred HHHHhcCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccchhhH-HHHHHH-HHHHHHHHHHHHHHHHHHhcCHHH--
Confidence 35789999998765555444 444555555555 477787 33322 122223 344568888889999999887533
Q ss_pred HHHHHHHHHHHHHHHHhhc-CchhHHH-----HHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh-----hchhhh
Q 008514 432 AMAVAQFVMAIGHIFLGMG-WPGAMYV-----GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT-----LANPAG 500 (563)
Q Consensus 432 ~l~~~~~~~~~~~lll~~~-~~~~l~~-----~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~-----~a~~vg 500 (563)
++.+..+..++=..+++.. ++..... +-.+=|++||..+......+.+....+.-++--++.. ++..+|
T Consensus 275 ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG 354 (400)
T PF03825_consen 275 LLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIG 354 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHH
Confidence 3333333333333344443 3322222 2234599999999999999999998777676666543 466666
Q ss_pred hhhccCC
Q 008514 501 SIFTSMP 507 (563)
Q Consensus 501 ~~l~~~~ 507 (563)
+++.+..
T Consensus 355 ~~igG~l 361 (400)
T PF03825_consen 355 SLIGGWL 361 (400)
T ss_pred HHHHHHH
Confidence 6666643
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.2e-06 Score=88.24 Aligned_cols=170 Identities=11% Similarity=0.095 Sum_probs=118.8
Q ss_pred cHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHH
Q 008514 360 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 437 (563)
Q Consensus 360 s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~ 437 (563)
.+++|.+....++......++...+.++.++.|.+..+ ..++...++..++++.+|++.||++||+. +....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~------~~~~~ 75 (382)
T PRK10091 2 KKVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHI------LLFLV 75 (382)
T ss_pred cchHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHH------HHHHH
Confidence 35677777777666666667777888888999988765 38899999999999999999999987442 23344
Q ss_pred HHHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhccCCCCCCCCccc
Q 008514 438 FVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMPRVDEPLKCE 516 (563)
Q Consensus 438 ~~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~~~~~~~~~~C~ 516 (563)
.+.+++.++... .+...+++.-.+.|++.|......+.++.|++..++.++..+....+..+|..+.+.... ...+
T Consensus 76 ~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~---~l~~ 152 (382)
T PRK10091 76 ALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGT---YLSQ 152 (382)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHH---HHhh
Confidence 444455444443 344567778899999999999999999999999888888888766544444443321100 0000
Q ss_pred cCcccHHHHHHHHHHHHHHHHHH
Q 008514 517 GSICYFLTSMIMSGLCIVAVILS 539 (563)
Q Consensus 517 G~~cy~~~f~i~~~~~~~~~~l~ 539 (563)
...+|.+|.+.+..+++..+..
T Consensus 153 -~~gwr~~f~~~~~~~~~~~~~~ 174 (382)
T PRK10091 153 -EFSWRYTFLLIAVFNIAVLASI 174 (382)
T ss_pred -hccHHHHHHHHHHHHHHHHHHH
Confidence 1238999998887766655433
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00017 Score=79.45 Aligned_cols=123 Identities=17% Similarity=0.219 Sum_probs=83.0
Q ss_pred HhcCcc-cccccccHHHHhhhCCChhhHHHHHHHHhhhhhhhhcchhhhccch-----hHHHHHHHHHHH-HHHHHHHHH
Q 008514 27 SCAGIG-YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLP-----IWGALLVGALQN-FIGYGWVWL 99 (563)
Q Consensus 27 l~~Gt~-Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~gi~~G~l~D~~g-----p~~~~~iG~~~~-~~Gy~~~~l 99 (563)
++-|.. -....-.+-+|+++|+|.+|++.+.....+.-.+-.+.|.+.|++| +|..++++.++. +..+..
T Consensus 36 ~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~--- 112 (468)
T TIGR00788 36 FVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGL--- 112 (468)
T ss_pred HHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHh---
Confidence 444444 3334566778889999999998887777777778888999999998 788888887765 233332
Q ss_pred HHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCCCCCcchhhhHhhhh
Q 008514 100 IVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAG 155 (563)
Q Consensus 100 ~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~~RG~~~Gl~~a~~G 155 (563)
.. ..++ .........++.+.+.+..|.++=.-.++..|++++...++...+++
T Consensus 113 -l~-~~~~-~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~ 165 (468)
T TIGR00788 113 -LP-GKVS-SAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWG 165 (468)
T ss_pred -cc-cccc-hHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHH
Confidence 11 1111 22222335666778888889998888899999555544444444444
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.9e-06 Score=88.89 Aligned_cols=150 Identities=18% Similarity=0.276 Sum_probs=105.0
Q ss_pred eechH-HHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh-cCchhHH
Q 008514 381 IDNLG-QMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMY 456 (563)
Q Consensus 381 i~n~~-~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~-~~~~~l~ 456 (563)
...+. .+.+++|.++.+. ..++..+.+.++.+.+|.++||++||+ .+.....+.+++.++... .+...+.
T Consensus 16 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~l~~~~~~~~~~~~~~~~~~~~~~~~ 89 (352)
T PF07690_consen 16 SPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRR------VLIIGLLLFALGSLLLAFASNFWLLL 89 (352)
T ss_dssp HHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHH------HHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCee------eEeehhhhhhhHHHHhhhhhhHHHHh
Confidence 33444 5667788877653 788899999999999999999998743 334444555555333332 3333678
Q ss_pred HHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhch----hhhhhhccCCCCCCCCccccCcccHHHHHHHHHHH
Q 008514 457 VGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLAN----PAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLC 532 (563)
Q Consensus 457 ~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~----~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~ 532 (563)
+...+.|++.|........++.|++..|+.++..++...+. .+|+.+.+.... ...++..|++.+.++
T Consensus 90 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~--------~~~~~~~~~~~~~~~ 161 (352)
T PF07690_consen 90 IARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS--------YFGWRWAFLISAILS 161 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------HCHHCCHHHHHHHHH
T ss_pred hhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh--------ccccccccccccchh
Confidence 89999999999999999999999999999999998876544 444444332220 122788999999998
Q ss_pred HHHHHHHHHHHh
Q 008514 533 IVAVILSMILVH 544 (563)
Q Consensus 533 ~~~~~l~l~l~~ 544 (563)
+++.++...+..
T Consensus 162 ~~~~il~~~~~~ 173 (352)
T PF07690_consen 162 LIAAILFILFLP 173 (352)
T ss_dssp HHHHHHHHCCC-
T ss_pred hhhhhhHhhhhh
Confidence 888775444433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.7e-06 Score=89.92 Aligned_cols=152 Identities=12% Similarity=0.049 Sum_probs=104.9
Q ss_pred chheeeechHHHHHHhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhc-Cc
Q 008514 376 SGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG-WP 452 (563)
Q Consensus 376 ~gl~~i~n~~~i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~-~~ 452 (563)
+..++...+.+|.++++.+... ..++++.++..++++.+|.++||++||+. +....++..++.++.... +.
T Consensus 31 ~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~------l~~~~~~~~~~~~~~~~a~~~ 104 (413)
T PRK15403 31 TTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPV------LITGALIFTLACAATLFTTSM 104 (413)
T ss_pred HHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHH------HHHHHHHHHHHHHHHHHcCCH
Confidence 5566777788899999887654 48899999999999999999999988442 223344444454444433 34
Q ss_pred hhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh----hchhhhhhhccCCCCCCCCccccCcccHHHHHHH
Q 008514 453 GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIM 528 (563)
Q Consensus 453 ~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~----~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~ 528 (563)
..++++-++.|++.|........++.|.|..++-++..+++. +++.+|+.+.+.... ...++..|++.
T Consensus 105 ~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~--------~~gw~~~f~~~ 176 (413)
T PRK15403 105 TQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH--------FVHWKVLFAII 176 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcCHHHHHHHH
Confidence 467778888899887766667788999999887777777654 345555544332110 12389999998
Q ss_pred HHHHHHHHHHHHH
Q 008514 529 SGLCIVAVILSMI 541 (563)
Q Consensus 529 ~~~~~~~~~l~l~ 541 (563)
....+++.++.++
T Consensus 177 ~~~~~i~~~~~~~ 189 (413)
T PRK15403 177 AVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHHHHH
Confidence 8877776655443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.6e-06 Score=88.23 Aligned_cols=166 Identities=10% Similarity=-0.016 Sum_probs=108.3
Q ss_pred HHHHHHHHHhhccchheeeechHHHHHHhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHH
Q 008514 363 FWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVM 440 (563)
Q Consensus 363 Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~ 440 (563)
||.++...++......+....+..+.++.+.++.+ ...++..+...++.+.+|.++||++||+. . .....+.
T Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~----~--~~~~~~~ 74 (365)
T TIGR00900 1 FRLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKV----M--IGADLIR 74 (365)
T ss_pred CeehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHH----H--HHHHHHH
Confidence 46666666665555444555556677777777654 37788899999999999999999988442 1 2222222
Q ss_pred HHHHHHHh-hc-----CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhh----hhhhccCCCCC
Q 008514 441 AIGHIFLG-MG-----WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPA----GSIFTSMPRVD 510 (563)
Q Consensus 441 ~~~~lll~-~~-----~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~v----g~~l~~~~~~~ 510 (563)
.++.++.. .. ....+++...+.|++.|.......++++|++..++.++.+|+...+..+ |+.+.+....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~- 153 (365)
T TIGR00900 75 AVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA- 153 (365)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-
Confidence 22222221 11 3345777888889999999999999999999999999988887654444 4333322110
Q ss_pred CCCccccCcccHHHHHHHHHHHHHHHHHHHHH
Q 008514 511 EPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 542 (563)
Q Consensus 511 ~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l 542 (563)
...++..|.+.+..++++.++...+
T Consensus 154 -------~~g~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 154 -------TLGIKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred -------HhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 1237888888777666655444443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.9e-06 Score=92.24 Aligned_cols=174 Identities=16% Similarity=0.178 Sum_probs=111.8
Q ss_pred HHHhhcH-HHHHHHHHHHhhccchheeeechHHHH-HHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhh-hhhhcCCch
Q 008514 355 TQALIKA-DFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEI-IVRDYAYPR 429 (563)
Q Consensus 355 ~~~l~s~-~Fwll~~~~~~~~g~gl~~i~n~~~i~-~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~-~~~~~~~~r 429 (563)
.+.++++ .+|.++...++...+--.+...+.... +++|.+..+. .++.+........+++|+++|| ++||+.
T Consensus 14 ~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~--- 90 (500)
T PRK09584 14 LNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRV--- 90 (500)
T ss_pred hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH---
Confidence 3556776 599999888887665555555566665 5688876643 4445555555556789999999 587442
Q ss_pred hHHHHHHHHHHHHHHHHHhhc--CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCc------chhhhhhhhhchhhhh
Q 008514 430 PVAMAVAQFVMAIGHIFLGMG--WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKK------FGALYNFLTLANPAGS 501 (563)
Q Consensus 430 ~~~l~~~~~~~~~~~lll~~~--~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~------fg~nyg~~~~a~~vg~ 501 (563)
+.....+..++++++... ....++++-++.|++.|......+.+++|.|..++ ++..|....++..+||
T Consensus 91 ---~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp 167 (500)
T PRK09584 91 ---IMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSM 167 (500)
T ss_pred ---HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHH
Confidence 233444555565554432 22345567788899999999999999999997432 3333444456666666
Q ss_pred hhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHH
Q 008514 502 IFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 542 (563)
Q Consensus 502 ~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l 542 (563)
.+.+...+ .-.|+..|.+.+...+++++..+..
T Consensus 168 ~i~g~l~~--------~~g~~~~F~i~~i~~~i~~i~~~~~ 200 (500)
T PRK09584 168 LATPWLAA--------KYGWSVAFALSVVGMLITVVNFAFC 200 (500)
T ss_pred HHHHHHHH--------hhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 66554321 1238999999877666665544443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.9e-05 Score=82.36 Aligned_cols=95 Identities=22% Similarity=0.246 Sum_probs=66.8
Q ss_pred hCCChhhHHHHHHHHhhhh-hhhhcchhhhccchhHHHHHHHHHHHHHHHHHHH-HHHhcCCCCchHHHHHHHHHHhccC
Q 008514 46 LNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVW-LIVTGRAPVLPLWAMCILIFVGNNG 123 (563)
Q Consensus 46 lg~sq~~l~~i~~a~~vG~-~~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~-l~~~g~i~~~s~~~l~~~~~l~g~g 123 (563)
+.=|..++.++..+..+-. .+++++|.+.||+.+|.+++..-+...+....+. +...|.. +.|+++.+.++.|.+
T Consensus 40 lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~---~~~~Ll~~~fl~g~~ 116 (524)
T PF05977_consen 40 LTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLL---SPWLLLILTFLLGIG 116 (524)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHH
Confidence 3344555666666655555 4699999999999999988888776655544433 3445543 578888899999999
Q ss_pred cchhhhhHHHHHHHhcCCCC
Q 008514 124 ETYFNTAALVSCVQNFPKSR 143 (563)
Q Consensus 124 ~~~~~ta~l~t~~k~FP~~R 143 (563)
.++.+.+--...-+--|+++
T Consensus 117 ~a~~~PA~~A~ip~lV~~~~ 136 (524)
T PF05977_consen 117 SAFFNPAWQAIIPELVPKED 136 (524)
T ss_pred HHHHHHHHHHHHHHhccHhh
Confidence 88877766666666667654
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.6e-06 Score=89.16 Aligned_cols=167 Identities=13% Similarity=0.144 Sum_probs=110.3
Q ss_pred hcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHH
Q 008514 359 IKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 436 (563)
Q Consensus 359 ~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~ 436 (563)
|...++..++.+++.......+-..+.++.+++|.++.+ ..+++..+...++++.+|++.||++||+. +...
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~------~~~~ 94 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYF------MGIG 94 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchh------HHHH
Confidence 344555555555554443334445567788889998765 37789999999999999999999988542 2333
Q ss_pred HHHHHHHHHHHhhcC-chhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhch----hhhhhhccCCCCCC
Q 008514 437 QFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLAN----PAGSIFTSMPRVDE 511 (563)
Q Consensus 437 ~~~~~~~~lll~~~~-~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~----~vg~~l~~~~~~~~ 511 (563)
.++..++.++..... ...+.+.-.+.|++.|..+.....++.|+|..|+.|+..|+...+. .+++.+.+....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~-- 172 (434)
T PRK11663 95 LIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL-- 172 (434)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 444444444443322 3345555667799999999999999999999888899888876444 444443332210
Q ss_pred CCccccCcccHHHHHHHHHHHHHHHHHH
Q 008514 512 PLKCEGSICYFLTSMIMSGLCIVAVILS 539 (563)
Q Consensus 512 ~~~C~G~~cy~~~f~i~~~~~~~~~~l~ 539 (563)
.-.+|..|.+.+.++++..++.
T Consensus 173 ------~~gw~~~f~~~~i~~~~~~~~~ 194 (434)
T PRK11663 173 ------HYGWRYGMMIAGIIAIVVGLFL 194 (434)
T ss_pred ------cccHHHHHHHHHHHHHHHHHHH
Confidence 1238999988876665544333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.1e-06 Score=87.10 Aligned_cols=165 Identities=13% Similarity=0.139 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhhccchheeeechHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHH
Q 008514 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF 438 (563)
Q Consensus 361 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~ 438 (563)
+-+|..++.+++..+.-.+.-..+.++.++++.+..+. ..++..+...+|++.+|+++||++||+. +....+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~------~~~~~~ 80 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQ------LIFGFA 80 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH------HHHHHH
Confidence 56777777777766655555556788888999987653 7788999999999999999999988542 233334
Q ss_pred HHHHHHHHHhhc-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhh----chhhhhhhccCCCCCCCC
Q 008514 439 VMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL----ANPAGSIFTSMPRVDEPL 513 (563)
Q Consensus 439 ~~~~~~lll~~~-~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~----a~~vg~~l~~~~~~~~~~ 513 (563)
+.+++.++.... +...+++.-.+.|++.|..+......+.|.|..|+-|...+.... +..++|.+.+....
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---- 156 (394)
T PRK03699 81 LMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA---- 156 (394)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 444554444433 334566677888999999999999999999987777777665443 33444443332110
Q ss_pred ccccCcccHHHHHHHHHHHHHHHHH
Q 008514 514 KCEGSICYFLTSMIMSGLCIVAVIL 538 (563)
Q Consensus 514 ~C~G~~cy~~~f~i~~~~~~~~~~l 538 (563)
....+|..|.+.+.++++..++
T Consensus 157 ---~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 157 ---RSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred ---ccccHHHHHHHHHHHHHHHHHH
Confidence 0124899998877766555443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-05 Score=87.55 Aligned_cols=150 Identities=13% Similarity=0.094 Sum_probs=99.8
Q ss_pred chHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhc-----CchhH
Q 008514 383 NLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG-----WPGAM 455 (563)
Q Consensus 383 n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~-----~~~~l 455 (563)
...+..++.|.++.+. ..++..++..++.+.+|+++||++||+.. .....+.+++.+++... ....+
T Consensus 48 ~~~p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l 121 (438)
T TIGR00712 48 LAMPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFL------PAGLILSAAVMLLMGFVPWATSSIAIM 121 (438)
T ss_pred hhhHHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceeh------HHHHHHHHHHHHHHhccccccchHHHH
Confidence 3445566678877653 77899999999999999999999875432 22333333443333221 12234
Q ss_pred HHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhcc----CCCCCCCCccccCcccHHHHHHHHHH
Q 008514 456 YVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTS----MPRVDEPLKCEGSICYFLTSMIMSGL 531 (563)
Q Consensus 456 ~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~----~~~~~~~~~C~G~~cy~~~f~i~~~~ 531 (563)
++.-.+.|++.|..+......+.|+|..|+-|+..|+...+..+|..+.+ .... ....||.+|++.+..
T Consensus 122 ~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~-------~~~~w~~~f~~~~~~ 194 (438)
T TIGR00712 122 FVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA-------WFNDWHAALYFPAIC 194 (438)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH-------HhhhhHHHHHHHHHH
Confidence 55667789999999998899999999999999998887654444433332 1110 012489999998888
Q ss_pred HHHHHHHHHHHHhh
Q 008514 532 CIVAVILSMILVHR 545 (563)
Q Consensus 532 ~~~~~~l~l~l~~R 545 (563)
+++..++..++.++
T Consensus 195 ~~i~~~~~~~~~~~ 208 (438)
T TIGR00712 195 AIIVALFAFAMMRD 208 (438)
T ss_pred HHHHHHHHHHhccC
Confidence 87766665555433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.7e-05 Score=84.78 Aligned_cols=168 Identities=12% Similarity=-0.001 Sum_probs=111.9
Q ss_pred cHHHHHHHHHHHhhcc----chheeeechHHHHHHhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHH
Q 008514 360 KADFWLIFFSLLLGSG----SGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 433 (563)
Q Consensus 360 s~~Fwll~~~~~~~~g----~gl~~i~n~~~i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l 433 (563)
++++|++.+.+.+... +.-++...+.++.++++.++.+ ...+.+.+...++.+..|.++||++||+. +
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~------l 81 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPV------M 81 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH------H
Confidence 3677777777666655 3444556677888899988764 37789999999999999999999987432 2
Q ss_pred HHHHHHHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh----hchhhhhhhccCCC
Q 008514 434 AVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMPR 508 (563)
Q Consensus 434 ~~~~~~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~----~a~~vg~~l~~~~~ 508 (563)
.....+..++.++... .+...+++...+.|++.|.........+.|+|..++-++..++.. ++..+||.+.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 161 (406)
T PRK15402 82 LAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALI 161 (406)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444433332 334457778888899999888888999999998766555444433 44455555543221
Q ss_pred CCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 008514 509 VDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 541 (563)
Q Consensus 509 ~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~ 541 (563)
+ ...++..|++.+.+++++.+....
T Consensus 162 ~--------~~~w~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK15402 162 H--------VLPWRGMFVLFAALAALSFFGLWR 186 (406)
T ss_pred H--------ccCccHHHHHHHHHHHHHHHHHHH
Confidence 0 124888998888777766554433
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.2e-06 Score=89.30 Aligned_cols=172 Identities=14% Similarity=0.144 Sum_probs=100.7
Q ss_pred HHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHH
Q 008514 356 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 432 (563)
Q Consensus 356 ~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~ 432 (563)
+..++++||.+++++++...+--.+...+....++ +|+++.+. .+++..+...++++.+|+++||++||+.. .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~----~ 80 (420)
T PRK09528 5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHL----L 80 (420)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH----H
Confidence 46788999999988888776554566666666665 79887754 89999999999999999999999884432 2
Q ss_pred HHHHHHHHHHHHHHH-hhc---C-c--hhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhh----hhhchhhhh
Q 008514 433 MAVAQFVMAIGHIFL-GMG---W-P--GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNF----LTLANPAGS 501 (563)
Q Consensus 433 l~~~~~~~~~~~lll-~~~---~-~--~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~----~~~a~~vg~ 501 (563)
..........+.+.. ... . . ....++.++.|.++..........+.+ +. ++.|..||. ..++..+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~g~~~g~~~~~~~~g~~i~~ 158 (420)
T PRK09528 81 WIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-VS-RRSGFEYGRARMWGSLGWALCA 158 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-HH-hhccccchhhHHhhhHHHHHHH
Confidence 111111111111111 100 0 0 012223444455555555555555433 22 444555554 345666776
Q ss_pred hhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHH
Q 008514 502 IFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 542 (563)
Q Consensus 502 ~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l 542 (563)
.+.+.... ..++..|++.+.++++.+++.+.+
T Consensus 159 ~~~g~l~~---------~~~~~~f~~~~~~~~~~~~~~~~~ 190 (420)
T PRK09528 159 FIAGILFN---------INPQINFWLGSGSALILLVLLFFA 190 (420)
T ss_pred HHHHHHHh---------cCchHhHHHHHHHHHHHHHHHhcc
Confidence 66553321 125778888777776665554443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.5e-06 Score=90.00 Aligned_cols=165 Identities=18% Similarity=0.261 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhhccchheeeechHHHHH-HhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhh-hhhcCCchhHHHHHH
Q 008514 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTHI--FVSMISIWNFLGRVGGGYFSEII-VRDYAYPRPVAMAVA 436 (563)
Q Consensus 361 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~-~~~~~~~r~~~l~~~ 436 (563)
+.+|.++...+.-..+--++..-+....+ .+|+++.+. ..+.+.....++.+.+|+++||+ +||+. +.+.
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~------iliG 82 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMA------VMLG 82 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH------HHHH
Confidence 33455444444333322222233333333 468876643 67888889999999999999998 87442 2344
Q ss_pred HHHHHHHHHHHhhcC--chhHHHHHHHHHhhhhhhcchhHHHHHHhhccC------cchhhhhhhhhchhhhhhhccCCC
Q 008514 437 QFVMAIGHIFLGMGW--PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLK------KFGALYNFLTLANPAGSIFTSMPR 508 (563)
Q Consensus 437 ~~~~~~~~lll~~~~--~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k------~fg~nyg~~~~a~~vg~~l~~~~~ 508 (563)
..++.++++++.... +..++++..+++++.|...+..+++++|.|..+ -++..|....++..++|++.+...
T Consensus 83 ~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~ 162 (493)
T PRK15462 83 ALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ 162 (493)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 445556665554322 234555666777888888888899999999864 277778777788888888776432
Q ss_pred CCCCCccccCcccHHHHHHHHHHHHHHHHHH
Q 008514 509 VDEPLKCEGSICYFLTSMIMSGLCIVAVILS 539 (563)
Q Consensus 509 ~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~ 539 (563)
. ...|+..|.+.+...+++++..
T Consensus 163 ~--------~~Gw~~~F~iaaigm~l~li~~ 185 (493)
T PRK15462 163 E--------EYSWAMGFGLAAVGMIAGLVIF 185 (493)
T ss_pred h--------hhChHHHHHHHHHHHHHHHHHH
Confidence 0 1248999988766555555443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.19 E-value=1e-05 Score=87.16 Aligned_cols=147 Identities=10% Similarity=0.045 Sum_probs=99.9
Q ss_pred HHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHH
Q 008514 387 MSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIG 463 (563)
Q Consensus 387 i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~-~~~~~l~~~~~l~G 463 (563)
|.+++|.++.+. ..+++.++..++.+..|+++||++||+. +....++..++.++... .+...+++.-.+.|
T Consensus 34 l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G 107 (412)
T TIGR02332 34 MGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRW------IAGIMVLWGIASTATMFATGPESLYLLRILVG 107 (412)
T ss_pred hHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 456778887654 7899999999999999999999988442 23334444545444443 34456788888999
Q ss_pred hhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhcc----CCCCCCCCccccCcccHHHHHHHHHHHHHHHHHH
Q 008514 464 LGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTS----MPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILS 539 (563)
Q Consensus 464 l~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~----~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~ 539 (563)
++.|+.+.....+++|+|..|+-|+..|+...+..+|..+.+ .....+ ...+...+|.+|++.+...++.+++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~--~~~~~~gwr~~f~~~~~~~l~~~~~~ 185 (412)
T TIGR02332 108 IAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALD--GLMALKGWQWLFLLEGFPSVILGVMT 185 (412)
T ss_pred HHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCccchhHHHHHHHHHHHHHHHHH
Confidence 999999888888999999988889888887655444443332 111000 01122358999999777665544444
Q ss_pred HH
Q 008514 540 MI 541 (563)
Q Consensus 540 l~ 541 (563)
.+
T Consensus 186 ~~ 187 (412)
T TIGR02332 186 WF 187 (412)
T ss_pred hh
Confidence 33
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.19 E-value=1e-05 Score=84.44 Aligned_cols=137 Identities=15% Similarity=0.248 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHhhccchheeeechHH-HHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHH
Q 008514 361 ADFWLIFFSLLLGSGSGLTVIDNLGQ-MSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 437 (563)
Q Consensus 361 ~~Fwll~~~~~~~~g~gl~~i~n~~~-i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~ 437 (563)
+.||..++.+++......++..-..+ +.+++|.++.+. ..++..+...++.+.+|+++||++||+. +.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~------~~~~~ 74 (366)
T TIGR00886 1 RNLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYT------TTLSL 74 (366)
T ss_pred CchHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHH------HHHHH
Confidence 36899999888877666666666664 777899987653 7789999999999999999999987442 23444
Q ss_pred HHHHHHHHHHhh-c-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh----hchhhhhhhc
Q 008514 438 FVMAIGHIFLGM-G-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFT 504 (563)
Q Consensus 438 ~~~~~~~lll~~-~-~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~----~a~~vg~~l~ 504 (563)
++..++.+++.. . ....+++...+.|++.| .+.....+++|++..|+-++..++.. ++..+|+.+.
T Consensus 75 ~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 146 (366)
T TIGR00886 75 LLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVM 146 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 555555555443 2 33456677888898844 55667788999999888888877654 4444444443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.4e-05 Score=82.87 Aligned_cols=149 Identities=15% Similarity=0.177 Sum_probs=102.7
Q ss_pred chHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh-cCchhHHHHH
Q 008514 383 NLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGT 459 (563)
Q Consensus 383 n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~-~~~~~l~~~~ 459 (563)
-..++.+++|.+..+. ..++..++..++++.+|.++||++||+.. .+...+.+++.++... .+...++++-
T Consensus 25 ~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (377)
T TIGR00890 25 LAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVA------MLGGILYGLGFTFYAIADSLAALYLTY 98 (377)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchh------HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667788887653 88999999999999999999999985543 2333444444444333 2334566677
Q ss_pred HHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhccCC-CCCCCCccccCcccHHHHHHHHHHHHHHHHH
Q 008514 460 LLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMP-RVDEPLKCEGSICYFLTSMIMSGLCIVAVIL 538 (563)
Q Consensus 460 ~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~~~-~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l 538 (563)
.+.|++.|..+......+.|+|. |+-|+..++...+..+|+.+.+.. ..- .....+|..|++.+.++++..++
T Consensus 99 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~f~~~~~~~~~~~~~ 172 (377)
T TIGR00890 99 GLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSV-----INLEGVPAAFIYMGIIFLLVIVL 172 (377)
T ss_pred HHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHH-----HhcccHHHHHHHHHHHHHHHHHH
Confidence 78999999888888888899996 778888888777666665543311 000 00124899999988888777666
Q ss_pred HHHHH
Q 008514 539 SMILV 543 (563)
Q Consensus 539 ~l~l~ 543 (563)
.+++.
T Consensus 173 ~~~~~ 177 (377)
T TIGR00890 173 GAFLI 177 (377)
T ss_pred HHHhe
Confidence 65544
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.6e-05 Score=81.45 Aligned_cols=166 Identities=22% Similarity=0.357 Sum_probs=113.4
Q ss_pred HHHHHHHHhhccchheeeechHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHH
Q 008514 364 WLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMA 441 (563)
Q Consensus 364 wll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~ 441 (563)
|.+....++..............+.++.+.++.+. ..++..+...++++.+|+++||++||+. +.....+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~------~~~~~~~~~ 75 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRV------LLLGLLLFA 75 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchh------hHHHHHHHH
Confidence 44555554444444444555666777788776643 7788899999999999999999988552 234444445
Q ss_pred HHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhcc----CCCCCCCCccc
Q 008514 442 IGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTS----MPRVDEPLKCE 516 (563)
Q Consensus 442 ~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~----~~~~~~~~~C~ 516 (563)
++.++... .....+++...+.|++.|..+...+.++.|++..|+.++.+++...+..+|..+.+ ...+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------- 148 (352)
T cd06174 76 LGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE------- 148 (352)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 55444433 33446777888999999999999999999999998989888887654444444333 2210
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008514 517 GSICYFLTSMIMSGLCIVAVILSMILV 543 (563)
Q Consensus 517 G~~cy~~~f~i~~~~~~~~~~l~l~l~ 543 (563)
...++..|.+.....+++.++...+.
T Consensus 149 -~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (352)
T cd06174 149 -SLGWRWLFLILAILGLLLALLLLFLL 174 (352)
T ss_pred -HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01278888888887777766655544
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.8e-05 Score=84.19 Aligned_cols=149 Identities=10% Similarity=0.108 Sum_probs=104.3
Q ss_pred chHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh-cCchhHHHHH
Q 008514 383 NLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGT 459 (563)
Q Consensus 383 n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~-~~~~~l~~~~ 459 (563)
-..++.+++|.++.+. .++++.+...++.+.+|.++||++||+ .+.....+.+++.++... .+...+++.-
T Consensus 31 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~r 104 (390)
T PRK03545 31 LLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRK------LLIGLFVLFIASHVLSALAWNFTVLLISR 104 (390)
T ss_pred chHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH------HHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4678888999987754 788899999999999999999998843 223344455555544443 3344566777
Q ss_pred HHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHH
Q 008514 460 LLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILS 539 (563)
Q Consensus 460 ~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~ 539 (563)
.+.|++.|..+.....++.|++..++-++..|+...+..+|..+.+.... .....-.+|..|.+.+.++++..++.
T Consensus 105 ~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~----~l~~~~gw~~~f~~~~~~~~l~~~~~ 180 (390)
T PRK03545 105 IGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGR----VIGQYLGWRTTFLAIGGGALITLLLL 180 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHH----HHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999899999999877655554444331100 00001237999999888777665554
Q ss_pred HH
Q 008514 540 MI 541 (563)
Q Consensus 540 l~ 541 (563)
..
T Consensus 181 ~~ 182 (390)
T PRK03545 181 IK 182 (390)
T ss_pred HH
Confidence 44
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00013 Score=80.88 Aligned_cols=123 Identities=23% Similarity=0.128 Sum_probs=90.8
Q ss_pred ccccccHHHH-hhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 008514 34 LFGSISPVIK-SSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLW 111 (563)
Q Consensus 34 ~fS~ys~~Lk-~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~ 111 (563)
.-+.|+.... +.++.+....++......+|..+ .++.|.+.|++|+|.+++++.++..++-.+ +... ++++
T Consensus 100 ~~~~~s~~~~~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~-----~a~a--~~~~ 172 (521)
T KOG0255|consen 100 GSSVYSIVSEWNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGIL-----TAFA--PNYW 172 (521)
T ss_pred CCCcccccchhceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHH-----HHHh--CcHH
Confidence 3445555554 56777777777777778888876 567999999999999999988876555432 2222 3688
Q ss_pred HHHHHHHHhccCcchhhhhHHHHHHHhc-CCCCCcchhhhHhhhhhhHHHHHHH
Q 008514 112 AMCILIFVGNNGETYFNTAALVSCVQNF-PKSRGPVVGILKGFAGLGGAILTQV 164 (563)
Q Consensus 112 ~l~~~~~l~g~g~~~~~ta~l~t~~k~F-P~~RG~~~Gl~~a~~GLSa~i~s~i 164 (563)
..+++=++.|.+.+..++.+....+.++ |++|+.+..+ ..++-..+.+...+
T Consensus 173 ~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~ 225 (521)
T KOG0255|consen 173 MFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAG 225 (521)
T ss_pred HHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHH
Confidence 8888889999988888999999999999 5779999888 55554444444333
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.15 E-value=1e-05 Score=84.16 Aligned_cols=145 Identities=14% Similarity=0.167 Sum_probs=100.5
Q ss_pred HHHHHHhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHH
Q 008514 385 GQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLL 461 (563)
Q Consensus 385 ~~i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~-~~~~~l~~~~~l 461 (563)
..+.+++|.++.+ ...++..+.+.++.+.+|+++||++||+.. .....+..++.++... .....+++.-.+
T Consensus 18 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 91 (399)
T TIGR00893 18 PMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTL------AVFIVIWGVFTGLQAFAGAYVSLYILRVL 91 (399)
T ss_pred HHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceee------HHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 3455677887664 478899999999999999999999886543 2223333334333332 334467778889
Q ss_pred HHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhh----hhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHH
Q 008514 462 IGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAG----SIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVI 537 (563)
Q Consensus 462 ~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg----~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~ 537 (563)
.|++.|..+...+.+++|++..|+-++..|+......+| +.+.+.... ...|+..|.+.+.++++..+
T Consensus 92 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~ 163 (399)
T TIGR00893 92 LGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI--------HFSWQWAFIIEGVLGIIWGV 163 (399)
T ss_pred HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH--------hCCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888888776544444 433332110 11289999888777766655
Q ss_pred HHHHHH
Q 008514 538 LSMILV 543 (563)
Q Consensus 538 l~l~l~ 543 (563)
+...+.
T Consensus 164 ~~~~~~ 169 (399)
T TIGR00893 164 LWLKFI 169 (399)
T ss_pred Hhhhee
Confidence 554443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.1e-06 Score=88.39 Aligned_cols=160 Identities=12% Similarity=0.098 Sum_probs=110.7
Q ss_pred cHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHH
Q 008514 360 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 437 (563)
Q Consensus 360 s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~ 437 (563)
+++||.+++..++......++...+.++.++++.++.. ..++.+.+...+..+.+|++.||++||+-. ....
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl------~~~~ 75 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVM------FIAN 75 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhh------HHHH
Confidence 57899999998887766556677777888888877653 367888899999999999999999885533 2222
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhh----chhhhhhhccCCCCCCCC
Q 008514 438 FVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL----ANPAGSIFTSMPRVDEPL 513 (563)
Q Consensus 438 ~~~~~~~lll~~~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~----a~~vg~~l~~~~~~~~~~ 513 (563)
.+..++.+++..... .++.-.+.|++.|......-+++.|++..|+.++..|++.. +..+||.+.+....
T Consensus 76 ~~~~~~~~~~~~~~~--~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~---- 149 (393)
T PRK11195 76 GIKLLGCLLMLFGIH--PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD---- 149 (393)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 233333322222111 24455778999999999999999999999999999998753 44555555443220
Q ss_pred ccccCcccHHHHHHHHHHHHHHH
Q 008514 514 KCEGSICYFLTSMIMSGLCIVAV 536 (563)
Q Consensus 514 ~C~G~~cy~~~f~i~~~~~~~~~ 536 (563)
. . ++..+.+.+.+.+++.
T Consensus 150 --~--~-~~~~~~i~~~~~~~~~ 167 (393)
T PRK11195 150 --P--H-AEAALAVCALIYLLAA 167 (393)
T ss_pred --H--H-HHHHHHHHHHHHHHHH
Confidence 0 1 6667766655544443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=3e-05 Score=82.41 Aligned_cols=166 Identities=10% Similarity=0.110 Sum_probs=110.4
Q ss_pred HHHHHHHHHHhhccchheeeechHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHH
Q 008514 362 DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFV 439 (563)
Q Consensus 362 ~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~ 439 (563)
..|++.+..++......+++..+.++.++++.++.+. ..+++.+...++.+.+|.++||++||+.. .....+
T Consensus 9 ~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~------~~~~~~ 82 (394)
T PRK11652 9 LLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVI------LVGMSI 82 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH------HHHHHH
Confidence 4455555555555555566677888999999987653 78899999999999999999999884422 223333
Q ss_pred HHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchh----hhhhhccCCCCCCCCc
Q 008514 440 MAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANP----AGSIFTSMPRVDEPLK 514 (563)
Q Consensus 440 ~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~----vg~~l~~~~~~~~~~~ 514 (563)
..++.++... .+...+++...+.|++.|........++.|++..++.++..++..++.. +||.+.+....
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~----- 157 (394)
T PRK11652 83 FILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT----- 157 (394)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 4444433333 3334567788888999988877778888999888888887776654443 44443332110
Q ss_pred cccCcccHHHHHHHHHHHHHHHHHHHH
Q 008514 515 CEGSICYFLTSMIMSGLCIVAVILSMI 541 (563)
Q Consensus 515 C~G~~cy~~~f~i~~~~~~~~~~l~l~ 541 (563)
...++.+|.+.+...++..++..+
T Consensus 158 ---~~g~~~~f~~~~~~~~~~~~~~~~ 181 (394)
T PRK11652 158 ---LFGWRACYLFLLLLGAGVTFSMAR 181 (394)
T ss_pred ---ccChHHHHHHHHHHHHHHHHHHHH
Confidence 123899998877666554444333
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00048 Score=75.60 Aligned_cols=108 Identities=16% Similarity=-0.011 Sum_probs=62.6
Q ss_pred HhhhCCChhhHHHH-HHHHhhhhhhhhcchhhhccc----hh-HHHHHHHHHHHHHHHHHHHHHHhcCCCCc-hHHHHHH
Q 008514 43 KSSLNYNQKQIARL-GVAKDLGDSVGFLAGSLCEVL----PI-WGALLVGALQNFIGYGWVWLIVTGRAPVL-PLWAMCI 115 (563)
Q Consensus 43 k~~lg~sq~~l~~i-~~a~~vG~~~gi~~G~l~D~~----gp-~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~-s~~~l~~ 115 (563)
-+.+|++...+.++ .+....-...-++.|.+.||. |+ |+-+++|++...+.+.++|..- +..... -.|....
T Consensus 37 t~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p-~~s~~~~~~y~~~~ 115 (460)
T PRK11462 37 TDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP-DLSMNGKMIYAAIT 115 (460)
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC-CCCcchHHHHHHHH
Confidence 36789999998886 555555555678889999974 66 4567778888777777666331 111111 1333333
Q ss_pred HHHHhccCcc---hhhhhHHHHHHHhcCCCCCcchhhhHhh
Q 008514 116 LIFVGNNGET---YFNTAALVSCVQNFPKSRGPVVGILKGF 153 (563)
Q Consensus 116 ~~~l~g~g~~---~~~ta~l~t~~k~FP~~RG~~~Gl~~a~ 153 (563)
|.+. ..+-+ .-|.+ +...+-.=|++|..+++.-..+
T Consensus 116 ~~~~-~~~~t~~~ipy~a-l~~~lt~d~~eRt~l~s~r~~~ 154 (460)
T PRK11462 116 YTLL-TLLYTVVNIPYCA-LGGVITNDPTQRISLQSWRFVL 154 (460)
T ss_pred HHHH-HHHHHHHhccHHH-HHHHhcCCHHHHHHHHHHHHHH
Confidence 3322 12222 22333 4444433388899888765543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2e-05 Score=82.84 Aligned_cols=153 Identities=15% Similarity=0.177 Sum_probs=106.9
Q ss_pred hheeeechHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh-cCch
Q 008514 377 GLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPG 453 (563)
Q Consensus 377 gl~~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~-~~~~ 453 (563)
.-++...+.++.+++|.++.+. ..++..+...++++.+|.++||++||+. +.....+..++.+++.. .+..
T Consensus 7 ~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~------~~~~~~~~~i~~~~~~~~~~~~ 80 (377)
T PRK11102 7 IDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPV------ILGGTLVFALAAVACALAQTID 80 (377)
T ss_pred HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHH------HHHHHHHHHHHHHHHHHHccHH
Confidence 3445567788899999887654 7789999999999999999999977332 23334444444444433 3344
Q ss_pred hHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhc----hhhhhhhccCCCCCCCCccccCcccHHHHHHHH
Q 008514 454 AMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLA----NPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMS 529 (563)
Q Consensus 454 ~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a----~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~ 529 (563)
.+++...+.|++.|........++.|.+..++.++..++...+ ..+|+.+.+...+ .-.++..|.+.+
T Consensus 81 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~--------~~~~~~~~~~~~ 152 (377)
T PRK11102 81 QLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV--------WFSWHAIFWVLA 152 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HcChHHHHHHHH
Confidence 5777888889999999999999999999999889888876544 3444443322110 012788998888
Q ss_pred HHHHHHHHHHHHHH
Q 008514 530 GLCIVAVILSMILV 543 (563)
Q Consensus 530 ~~~~~~~~l~l~l~ 543 (563)
.++++..++..+..
T Consensus 153 ~~~~~~~~~~~~~~ 166 (377)
T PRK11102 153 LAAILAAALVFFFI 166 (377)
T ss_pred HHHHHHHHHHHHhC
Confidence 87777665555443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.8e-05 Score=84.75 Aligned_cols=169 Identities=15% Similarity=0.181 Sum_probs=104.3
Q ss_pred HHHHHHHHhhccchhee---eechHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHH
Q 008514 364 WLIFFSLLLGSGSGLTV---IDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF 438 (563)
Q Consensus 364 wll~~~~~~~~g~gl~~---i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~ 438 (563)
|.++...++....-.+. +...-|..++.|.++.+. .++...+...++.+.+|+++||++||+. +.....
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~------l~~~~~ 101 (452)
T PRK11273 28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF------LPAGLI 101 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchh------HHHHHH
Confidence 66666555543322221 112223333337776643 7889999999999999999999988542 233334
Q ss_pred HHHHHHHHHhhc-----CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhcc----CCCC
Q 008514 439 VMAIGHIFLGMG-----WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTS----MPRV 509 (563)
Q Consensus 439 ~~~~~~lll~~~-----~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~----~~~~ 509 (563)
+.+++.+++... ....+++...+.|++.|..+.....++.|+|..|+-|+..|+...+..+|..+.+ ....
T Consensus 102 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 181 (452)
T PRK11273 102 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA 181 (452)
T ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 444444433321 2224555667889999988887888899999988899988887655444432211 0000
Q ss_pred CCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhh
Q 008514 510 DEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHR 545 (563)
Q Consensus 510 ~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R 545 (563)
....++..|++.+.++++..++.+++.++
T Consensus 182 -------~~~gw~~~f~i~~~~~~~~~~l~~~~~~~ 210 (452)
T PRK11273 182 -------WFNDWHAALYMPAFAAILVALFAFAMMRD 210 (452)
T ss_pred -------HhccHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 01248999998887777765555554443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.5e-05 Score=82.04 Aligned_cols=147 Identities=20% Similarity=0.185 Sum_probs=97.6
Q ss_pred HHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHh-hcCchhHHHHHHH
Q 008514 385 GQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLL 461 (563)
Q Consensus 385 ~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~-~~~~~~l~~~~~l 461 (563)
.++.+++|.++.+. ..+...++..++.+.+|+++||++||+.. .....+..++.++.. ..+...+.+.-.+
T Consensus 39 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 112 (406)
T PRK11551 39 PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRIL------IVSVALFGLFSLATAQAWDFPSLLVARLL 112 (406)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45667888887643 77889999999999999999999885432 222233333333332 2334456778888
Q ss_pred HHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 008514 462 IGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 541 (563)
Q Consensus 462 ~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~ 541 (563)
.|++.|........++.|+|..|+-++..|+...+..+|..+.+.... .......++..|++.+.+.++..++...
T Consensus 113 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (406)
T PRK11551 113 TGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGV----LAAGDAAWRHIFYVGGVGPLLLVPLLMR 188 (406)
T ss_pred HHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999899999888876555444444331100 0000123788888876655555444433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.3e-05 Score=83.36 Aligned_cols=146 Identities=15% Similarity=0.207 Sum_probs=99.6
Q ss_pred HHHHHHhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHH
Q 008514 385 GQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLL 461 (563)
Q Consensus 385 ~~i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~-~~~~~l~~~~~l 461 (563)
..+.+++|.++.+ ...++..+...++.+.+|+++||++||+. +....++..++.+++.. .+...+++.-.+
T Consensus 19 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (379)
T TIGR00881 19 PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVF------LPIGLILCAIVNLFFGFSTSLWVMAALWAL 92 (379)
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeeh------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4466677888765 37889999999999999999999988542 23334444455444433 333456778888
Q ss_pred HHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhcc----CCCCCCCCccccCcccHHHHHHHHHHHHHHHH
Q 008514 462 IGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTS----MPRVDEPLKCEGSICYFLTSMIMSGLCIVAVI 537 (563)
Q Consensus 462 ~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~----~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~ 537 (563)
.|++.|..+.....+++|++..|+-++..++...+..+|..+.+ ..-. ....++..|.+.+.++++..+
T Consensus 93 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 165 (379)
T TIGR00881 93 NGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA-------ELYSWHWVFIVPGIIAIIVSL 165 (379)
T ss_pred HHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHH-------hcCCchhHHHHHHHHHHHHHH
Confidence 89999999999999999999988888888876644444433333 1100 012378888887777666555
Q ss_pred HHHHHH
Q 008514 538 LSMILV 543 (563)
Q Consensus 538 l~l~l~ 543 (563)
+.++..
T Consensus 166 ~~~~~~ 171 (379)
T TIGR00881 166 ICFLLL 171 (379)
T ss_pred HHheee
Confidence 554443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=5e-05 Score=83.79 Aligned_cols=163 Identities=11% Similarity=0.065 Sum_probs=88.5
Q ss_pred hcCcccccccccHHH-HhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHH-HHHHHHHHHhcC
Q 008514 28 CAGIGYLFGSISPVI-KSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFI-GYGWVWLIVTGR 104 (563)
Q Consensus 28 ~~Gt~Y~fS~ys~~L-k~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~-Gy~~~~l~~~g~ 104 (563)
.....|.+..|.|+. ++.+|++..+...+.....+|..+ .+..|.+.||+|+|.++.++.+...+ ++..+... ..
T Consensus 262 ~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~-~~- 339 (490)
T PRK10642 262 TNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI-NS- 339 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-hC-
Confidence 345667777888885 467899988776666666676655 55689999999999988888764332 33322222 11
Q ss_pred CCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHHHHhcCCChh-HHHHHHHH
Q 008514 105 APVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHAPDHA-NLIFMVAV 182 (563)
Q Consensus 105 i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~-~fll~la~ 182 (563)
.+.+.+....++.|.+.+.............||. .||++.|+.-...-+.+.+.+.+.....+...+ ....++..
T Consensus 340 ---~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~ 416 (490)
T PRK10642 340 ---NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLM 416 (490)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 1233333222222222222222223333467986 599998875554444444444333322221111 22222334
Q ss_pred HHHHHHHhhheee
Q 008514 183 GPAMVVIALMFII 195 (563)
Q Consensus 183 ~~~~v~l~~~~~v 195 (563)
.+.+++++..+++
T Consensus 417 ~~~~i~~~~~~~~ 429 (490)
T PRK10642 417 VVAVIGLITGVTM 429 (490)
T ss_pred HHHHHHHHHHHHh
Confidence 4556666666655
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.07 E-value=3e-05 Score=81.69 Aligned_cols=160 Identities=17% Similarity=0.182 Sum_probs=104.9
Q ss_pred HHHHHHHHHhhccchheeeechHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHH
Q 008514 363 FWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVM 440 (563)
Q Consensus 363 Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~ 440 (563)
+...++..++....-.++.....++.++.|.++.+. ..++..+...++.+.+|+++||++||+. +.....+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~------~~~~~~~~ 87 (405)
T TIGR00891 14 FSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLP------MVTSIVLF 87 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH------HHHHHHHH
Confidence 344444444333333333344456667788887653 7789999999999999999999988442 23333444
Q ss_pred HHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhccC----CCCCCCCcc
Q 008514 441 AIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSM----PRVDEPLKC 515 (563)
Q Consensus 441 ~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~~----~~~~~~~~C 515 (563)
+++.++... .+...+++.-.+.|++.|..+.....++.|++..++-++..|+...+..+|..+.+. ....
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~----- 162 (405)
T TIGR00891 88 SAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV----- 162 (405)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 444444433 334467778889999999999999999999999999999999877655555544431 1100
Q ss_pred ccCcccHHHHHHHHHHHHH
Q 008514 516 EGSICYFLTSMIMSGLCIV 534 (563)
Q Consensus 516 ~G~~cy~~~f~i~~~~~~~ 534 (563)
.| ..++..|.+.+...++
T Consensus 163 ~~-~~w~~~f~~~~~~~~~ 180 (405)
T TIGR00891 163 WG-DGWRALFFISILPIIF 180 (405)
T ss_pred cC-ccHHHHHHHHHHHHHH
Confidence 01 2378888775444433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.05 E-value=4e-05 Score=81.66 Aligned_cols=168 Identities=15% Similarity=0.113 Sum_probs=102.4
Q ss_pred cHHHHHHHHHHHhhccchheeeechHHHHH-HhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHH-H
Q 008514 360 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMA-V 435 (563)
Q Consensus 360 s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~-~ 435 (563)
|++||.+....++...+--.+...+....+ ++|.++.+. .+++..+...++++.+|+++||++||+.. ... .
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~----~~~~~ 76 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHL----LWIIS 76 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH----HHHHH
Confidence 689999987777766655555556666555 468887654 88999999999999999999999885533 111 1
Q ss_pred HHHHHHHHHHHHhhcC------chhHHHHHHHHHhhhhhhcchhHHHHHHhhcc--CcchhhhhhhhhchhhhhhhccCC
Q 008514 436 AQFVMAIGHIFLGMGW------PGAMYVGTLLIGLGYGAHWAIVPAAASELFGL--KKFGALYNFLTLANPAGSIFTSMP 507 (563)
Q Consensus 436 ~~~~~~~~~lll~~~~------~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~--k~fg~nyg~~~~a~~vg~~l~~~~ 507 (563)
..++.....+.+.... ...+.+..++.|++++.........+.|.=-. +.+|.......++..+|+.+.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l 156 (396)
T TIGR00882 77 GLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGIL 156 (396)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhhcccccchhhhhcccHHHHHHHHHhhh
Confidence 1111111111111111 11233455667888888777777777664111 123444444456677777765543
Q ss_pred CCCCCCccccCcccHHHHHHHHHHHHHHHHHHH
Q 008514 508 RVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 540 (563)
Q Consensus 508 ~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l 540 (563)
.. -.++..|++.+.+.++..++.+
T Consensus 157 ~~---------~~~~~~f~~~~~~~~~~~~~~~ 180 (396)
T TIGR00882 157 FS---------IDPQIVFWLGSGFALILMLLLM 180 (396)
T ss_pred hc---------cCchHHHHHHHHHHHHHHHHHH
Confidence 21 1268889888777776655543
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.6e-05 Score=84.90 Aligned_cols=155 Identities=12% Similarity=0.153 Sum_probs=106.8
Q ss_pred eeechHHHHHHhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhc-CchhHH
Q 008514 380 VIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG-WPGAMY 456 (563)
Q Consensus 380 ~i~n~~~i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~-~~~~l~ 456 (563)
+......+.+++|.++.+ ...+.+.+++.++.+.+|+++||++||+. +.....+..++.++.... ....+.
T Consensus 21 ~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~------~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (485)
T TIGR00711 21 VNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRL------FLISTFAFTLGSLLCGVAPNLELMI 94 (485)
T ss_pred HHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHH------HHHHHHHHHHHHHHHhCcCCHHHHH
Confidence 334566778888887654 37889999999999999999999987442 233444455555554433 334677
Q ss_pred HHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHH
Q 008514 457 VGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAV 536 (563)
Q Consensus 457 ~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~ 536 (563)
+.-.+.|++.|........++.|++..|+-++..++...+..+|+.+.+.... .......++..|++...+++++.
T Consensus 95 ~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~----~l~~~~~w~~~f~~~~~~~~~~~ 170 (485)
T TIGR00711 95 IFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGG----WIIENYHWRWIFLINVPIGIIVV 170 (485)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHh----HhccCcCceehhhhhhHHHHHHH
Confidence 78888999999999999999999999999888888766544444443332110 00001247888888887777776
Q ss_pred HHHHHHHh
Q 008514 537 ILSMILVH 544 (563)
Q Consensus 537 ~l~l~l~~ 544 (563)
++..++..
T Consensus 171 ~~~~~~~~ 178 (485)
T TIGR00711 171 VVAFFILP 178 (485)
T ss_pred HHHHHHcC
Confidence 66655543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=8e-05 Score=79.07 Aligned_cols=170 Identities=14% Similarity=0.118 Sum_probs=110.1
Q ss_pred cHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchh-------HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHH
Q 008514 360 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH-------IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 432 (563)
Q Consensus 360 s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~-------~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~ 432 (563)
+++++.+|+..++..-+.-++..-+..+.+++|.+..+ ...++..+...++.+.+|+++||++||+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~------ 86 (408)
T PRK09874 13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIM------ 86 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHH------
Confidence 45778887777665544445566677888888887542 25677888899999999999999977432
Q ss_pred HHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhh----chhhhhhhccCC
Q 008514 433 MAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL----ANPAGSIFTSMP 507 (563)
Q Consensus 433 l~~~~~~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~----a~~vg~~l~~~~ 507 (563)
+.....+.+++.+++.. .+...+++...+.|++.+ ........+.|.+..++.++..++... +..+|+.+.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 165 (408)
T PRK09874 87 LLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLL 165 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333444444444333 333456677788888754 456667788899988888887776654 334444443322
Q ss_pred CCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 008514 508 RVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVH 544 (563)
Q Consensus 508 ~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~ 544 (563)
.. ...++.+|.+.+.+++++.++..++.+
T Consensus 166 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (408)
T PRK09874 166 AD--------SYGLRPVFFITASVLFLCFLVTLFCIR 194 (408)
T ss_pred HH--------HhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 10 113788998888877776665555443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.2e-05 Score=81.27 Aligned_cols=152 Identities=12% Similarity=0.176 Sum_probs=105.0
Q ss_pred heeeechHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh-cCchh
Q 008514 378 LTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGA 454 (563)
Q Consensus 378 l~~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~-~~~~~ 454 (563)
-++..-+.++.+++|.++.+. ..+++.+...++.+..|+++||++||+ + +.....+..++.++... .+...
T Consensus 20 ~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~-----~-l~~~~~~~~i~~~~~~~~~~~~~ 93 (392)
T PRK10473 20 DMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKP-----V-AIPGAALFIIASLLCSLAETSSL 93 (392)
T ss_pred HHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChH-----H-HHHHHHHHHHHHHHHHHhCcHHH
Confidence 345566888889999887643 778889999999999999999998743 2 23333444445444433 33345
Q ss_pred HHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh----hchhhhhhhccCCCCCCCCccccCcccHHHHHHHHH
Q 008514 455 MYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSG 530 (563)
Q Consensus 455 l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~----~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~ 530 (563)
+++.-.+.|++.|..+.....++.|.+..|+-++..++.. ++..++|.+.+.... ...|+..|.+.+.
T Consensus 94 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~--------~~g~~~~~~~~~~ 165 (392)
T PRK10473 94 FLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML--------KFPWQSLFYTMAA 165 (392)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CcChHHHHHHHHH
Confidence 6667788899999999999999999999888877777654 334444444332110 1238999999888
Q ss_pred HHHHHHHHHHHHH
Q 008514 531 LCIVAVILSMILV 543 (563)
Q Consensus 531 ~~~~~~~l~l~l~ 543 (563)
++++..++.....
T Consensus 166 ~~~i~~~~~~~~~ 178 (392)
T PRK10473 166 MGILVLLLSLFIL 178 (392)
T ss_pred HHHHHHHHHHHHc
Confidence 7777766655443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.9e-05 Score=80.39 Aligned_cols=154 Identities=10% Similarity=0.067 Sum_probs=103.8
Q ss_pred ccchheeeechHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhc-
Q 008514 374 SGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG- 450 (563)
Q Consensus 374 ~g~gl~~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~- 450 (563)
..+.-++.....++.+++|.++.+. ..++..+...++.+.+|+++||++||+. +.....+..++.++....
T Consensus 19 ~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~------~~~~~~~~~~~~~~~~~~~ 92 (401)
T PRK11043 19 FLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPV------LLAGLSLFALGSLGMLWVE 92 (401)
T ss_pred HHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHH------HHHHHHHHHHHHHHHHHhc
Confidence 3333445566777888899887654 7889999999999999999999988442 233333444444444332
Q ss_pred CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh----hchhhhhhhccCCCCCCCCccccCcccHHHHH
Q 008514 451 WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMPRVDEPLKCEGSICYFLTSM 526 (563)
Q Consensus 451 ~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~----~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~ 526 (563)
+...+.+.-.+.|++.|........+++|+|..++-++.++... ++..+||.+.+.... .-.++..|.
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~--------~~g~~~~~~ 164 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN--------HFGWQAIFA 164 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCChHHHHH
Confidence 33456667788899888888888899999999887776666543 444555555443220 113788998
Q ss_pred HHHHHHHHHHHHHHH
Q 008514 527 IMSGLCIVAVILSMI 541 (563)
Q Consensus 527 i~~~~~~~~~~l~l~ 541 (563)
+...+.++..++..+
T Consensus 165 ~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 165 TLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887777666555443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.4e-05 Score=81.24 Aligned_cols=165 Identities=15% Similarity=0.130 Sum_probs=95.8
Q ss_pred ccHHH-HhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 008514 38 ISPVI-KSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCI 115 (563)
Q Consensus 38 ys~~L-k~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~ 115 (563)
+-|.+ ++.+|++..+...+.....+|... +++.|++.||.+++..+..+.+...+++.++. .. ++++.+..
T Consensus 245 ~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~-----~~--~~~~~~~~ 317 (417)
T PRK10489 245 LYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFG-----LM--PMWILAVL 317 (417)
T ss_pred hhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHH-----cc--chHHHHHH
Confidence 34444 444999998888875555566644 67789999998877777777776666655432 12 23444444
Q ss_pred HHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHhhhe
Q 008514 116 LIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTMIHAP-DHANLIFMVAVGPAMVVIALMF 193 (563)
Q Consensus 116 ~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~-~~~~fll~la~~~~~v~l~~~~ 193 (563)
..++.|.+.+...+.......+.+|+ +||.+.|+.....-++..+=+.+.-.+.+. +.....+..+....+++++...
T Consensus 318 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 318 CLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLL 397 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 44445565555545445566788886 599999997665555444444443333321 3344444555555555555555
Q ss_pred eecccCCCCCCCCCCC
Q 008514 194 IIRPVGGHRQVRPSDS 209 (563)
Q Consensus 194 ~vr~~~~~~~~~~~~~ 209 (563)
.+......+.+++||+
T Consensus 398 ~~~~~~~~~~~~~~~~ 413 (417)
T PRK10489 398 VLGELRRFRQTPPEVD 413 (417)
T ss_pred hcccccccccccccCC
Confidence 4443333333444443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.7e-05 Score=84.16 Aligned_cols=179 Identities=12% Similarity=0.035 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHhhccchheee----echHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHH
Q 008514 361 ADFWLIFFSLLLGSGSGLTVI----DNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMA 434 (563)
Q Consensus 361 ~~Fwll~~~~~~~~g~gl~~i----~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~ 434 (563)
+.+|.++...+++.....+.- .-..+|.+++|.++.+. ..+.+.+...++.+.+|+++||+++|+......+ .
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~-~ 103 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLI-L 103 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHH-H
Confidence 446666666655544322211 12456777888887653 7888999999999999999999988554321111 0
Q ss_pred HHHHHHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhccCCCCCCCC
Q 008514 435 VAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMPRVDEPL 513 (563)
Q Consensus 435 ~~~~~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~~~~~~~~~ 513 (563)
........+.++... .....+.+.-.+.|++.|..+.....+++|+|..|+.|+..|+...+..+|+.+.+.......+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~ 183 (467)
T PRK09556 104 SAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGAN 183 (467)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHH
Confidence 011111122111111 2233566677788999999999999999999999999999998776555555543311000000
Q ss_pred ccccCcccHHHHHHHHHHHHHHHHHHHH
Q 008514 514 KCEGSICYFLTSMIMSGLCIVAVILSMI 541 (563)
Q Consensus 514 ~C~G~~cy~~~f~i~~~~~~~~~~l~l~ 541 (563)
... .+..+..|.+.+.+.++..++.+.
T Consensus 184 ~~~-~~~~~~~f~~~g~~~~~~~i~~~~ 210 (467)
T PRK09556 184 YFF-DGHVIGMFIFPSIIALIIGFIGLR 210 (467)
T ss_pred hhc-cCcchhHHHHHHHHHHHHHHHHHH
Confidence 000 123566777766555544444333
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.1e-05 Score=85.72 Aligned_cols=162 Identities=18% Similarity=0.248 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhhccchheeeechHHHH-HHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhh-hhhhcCCchhHHHHHH
Q 008514 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEI-IVRDYAYPRPVAMAVA 436 (563)
Q Consensus 361 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~-~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~-~~~~~~~~r~~~l~~~ 436 (563)
+.+|.++...++-..+--++...+.... +++|.+..++ .++.+.....+.-+++|+++|| ++||+.. ...
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~------~~g 87 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTI------VLG 87 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHH------HHH
Confidence 4466666655554433333333333333 4578876543 6677888888888899999999 8885532 444
Q ss_pred HHHHHHHHHHHhhcC--chhHHHHHHHHHhhhhhhcchhHHHHHHhhccCc--chhhhhhhhh----chhhhhhhccCCC
Q 008514 437 QFVMAIGHIFLGMGW--PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKK--FGALYNFLTL----ANPAGSIFTSMPR 508 (563)
Q Consensus 437 ~~~~~~~~lll~~~~--~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~--fg~nyg~~~~----a~~vg~~l~~~~~ 508 (563)
.++..++++++.... +..++++-++.|++.|...+..+++++|.|..++ .+.-|++.++ |..+||.+.+...
T Consensus 88 ~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~ 167 (489)
T PRK10207 88 AIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA 167 (489)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 555555655544322 3345578888899999999999999999997653 3444555544 4444444433222
Q ss_pred CCCCCccccCcccHHHHHHHHHHHHHHH
Q 008514 509 VDEPLKCEGSICYFLTSMIMSGLCIVAV 536 (563)
Q Consensus 509 ~~~~~~C~G~~cy~~~f~i~~~~~~~~~ 536 (563)
. .-.|+..|++.....++++
T Consensus 168 ~--------~~gw~~~F~i~~i~~~~~~ 187 (489)
T PRK10207 168 D--------KFGYSVTYNLCGAGLIIAL 187 (489)
T ss_pred H--------hhChHHHHHHHHHHHHHHH
Confidence 0 0138999988655443333
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.6e-05 Score=80.81 Aligned_cols=161 Identities=15% Similarity=0.210 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHhhccchhee--ee-chHHHHHHhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHH
Q 008514 361 ADFWLIFFSLLLGSGSGLTV--ID-NLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAV 435 (563)
Q Consensus 361 ~~Fwll~~~~~~~~g~gl~~--i~-n~~~i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~ 435 (563)
+.-|++...++++.....++ ++ -+.+|.+++|.+..+ ..+++..++..++.+..|+++||++||+. +..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~------l~~ 79 (393)
T PRK09705 6 PLNFMLLVLVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRS------VAI 79 (393)
T ss_pred chHHHHHHHHHHHHHcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHH------HHH
Confidence 44577777777776655433 22 344566678888765 38889999999999999999999988442 345
Q ss_pred HHHHHHHHHHHHhhc-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh----hchhhhhhhccCCCCC
Q 008514 436 AQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMPRVD 510 (563)
Q Consensus 436 ~~~~~~~~~lll~~~-~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~----~a~~vg~~l~~~~~~~ 510 (563)
..++.+++.++.... +...++++-++.|++.|......+.++.|+|. ++-+...|... ++..+|+.+.+....
T Consensus 80 ~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~- 157 (393)
T PRK09705 80 SLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQ- 157 (393)
T ss_pred HHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 555666666655543 34467788999999999999999999999996 77788877754 345555554442210
Q ss_pred CCCccccCcccHHHHHHHHHHHHHH
Q 008514 511 EPLKCEGSICYFLTSMIMSGLCIVA 535 (563)
Q Consensus 511 ~~~~C~G~~cy~~~f~i~~~~~~~~ 535 (563)
. ...+|..+.+.....++.
T Consensus 158 ~------~~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 158 H------SETWYQTLAWWALPAVVA 176 (393)
T ss_pred h------cCCHHHHHHHHHHHHHHH
Confidence 0 013677776655544433
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.6e-05 Score=80.91 Aligned_cols=144 Identities=19% Similarity=0.303 Sum_probs=94.3
Q ss_pred chHHHHHHhCCC--------chh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh-cC
Q 008514 383 NLGQMSQSLGYD--------NTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GW 451 (563)
Q Consensus 383 n~~~i~~~~g~~--------~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~-~~ 451 (563)
....+..+.+.+ ..+ ...+++.+...++.+.+|+++||++||+. +.+...+..++.++... ..
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~------~~~~~~~~~~~~~~~~~~~~ 123 (481)
T TIGR00879 50 ALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS------LLIIALLFVIGAILMGLAAF 123 (481)
T ss_pred hhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH------HHHHHHHHHHHHHHHHHhcc
Confidence 344455555554 332 37889999999999999999999988432 23333344444444322 22
Q ss_pred -c--hhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhh----chhhhhhhc-cCCCCCCCCccccCcccHH
Q 008514 452 -P--GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL----ANPAGSIFT-SMPRVDEPLKCEGSICYFL 523 (563)
Q Consensus 452 -~--~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~----a~~vg~~l~-~~~~~~~~~~C~G~~cy~~ 523 (563)
. ..+++.-.+.|++.|..+.....+++|++..|+-++..++... +..+|+.+. ..... .....||.
T Consensus 124 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~------~~~~~w~~ 197 (481)
T TIGR00879 124 ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSL------NNTLGWRI 197 (481)
T ss_pred ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcC------CCCccHHH
Confidence 2 2577788999999999999999999999999998888887654 445555443 00110 11235899
Q ss_pred HHHHHHHHHHHHHHH
Q 008514 524 TSMIMSGLCIVAVIL 538 (563)
Q Consensus 524 ~f~i~~~~~~~~~~l 538 (563)
.|.+.+...++.++.
T Consensus 198 ~f~~~~~~~~~~~~~ 212 (481)
T TIGR00879 198 PLGLQLIPAGLLFLG 212 (481)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998865555544433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=9.8e-05 Score=78.84 Aligned_cols=158 Identities=12% Similarity=0.064 Sum_probs=85.3
Q ss_pred cccccccccH-HHHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 008514 31 IGYLFGSISP-VIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVL 108 (563)
Q Consensus 31 t~Y~fS~ys~-~Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~ 108 (563)
..+.+..+.| -+++.+|+++++...+.....++.. ..++.|++.||+++|..+.++.+...+.+... ...+
T Consensus 231 ~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~--~~~~----- 303 (393)
T PRK15011 231 TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGM--LMAH----- 303 (393)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH--HHHh-----
Confidence 3444444555 3677899999988875333333333 36789999999999887777666544443322 2212
Q ss_pred hHHHHHHHHHHhccCcchhhhhHHHHHHHhcCCCCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 008514 109 PLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVV 188 (563)
Q Consensus 109 s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~ 188 (563)
+.+.+....++.+.+.+...........+.+|++||++.|+.-....++..+-+.+.-.+.+...-...+.+.....+++
T Consensus 304 ~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~ 383 (393)
T PRK15011 304 SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIAT 383 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 22333223333333333322333334456789999999999776666665555444432222111222333344444555
Q ss_pred Hhhheee
Q 008514 189 IALMFII 195 (563)
Q Consensus 189 l~~~~~v 195 (563)
++...++
T Consensus 384 ~~~~~~~ 390 (393)
T PRK15011 384 LFCLLRI 390 (393)
T ss_pred HHHHHhh
Confidence 5444443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.6e-05 Score=78.79 Aligned_cols=143 Identities=18% Similarity=0.150 Sum_probs=101.9
Q ss_pred hcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHH
Q 008514 359 IKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 436 (563)
Q Consensus 359 ~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~ 436 (563)
.++++|++++..++....-..+..-+.++.+++|.+..++ ..+...+++.++++.+|+++||++||+.. ...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~------~~~ 77 (381)
T PRK03633 4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSY------YLA 77 (381)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH------HHH
Confidence 3677999998887765554455566777888888876653 88899999999999999999999885432 223
Q ss_pred HHHHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh----hchhhhhhhccCC
Q 008514 437 QFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMP 507 (563)
Q Consensus 437 ~~~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~----~a~~vg~~l~~~~ 507 (563)
..+..++.++... .+...++++-++.|++.|..+......+.+.+-.++-|+..|... ++..+|+.+.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l 153 (381)
T PRK03633 78 SLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV 153 (381)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334444444333 334467778888899999888777777778777777788777644 5666777665543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.9e-05 Score=83.65 Aligned_cols=174 Identities=14% Similarity=0.130 Sum_probs=103.8
Q ss_pred HHHHHHHHHHhhccchheeeechHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHH
Q 008514 362 DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFV 439 (563)
Q Consensus 362 ~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~ 439 (563)
.++..|+.+++.......+..-..++.+++|.+..+. ..+.+.++..+|.+++|+++||++||+. +....++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~------~~~~~~~ 110 (476)
T PLN00028 37 AFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYG------SAFLLML 110 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH------HHHHHHH
Confidence 3444444444433332223333456777889887653 5667778889999999999999988432 2233333
Q ss_pred HHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh----hchhhhhhhccCCC-CCCCC
Q 008514 440 MAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMPR-VDEPL 513 (563)
Q Consensus 440 ~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~----~a~~vg~~l~~~~~-~~~~~ 513 (563)
.+++.++... .....+++.-.+.|++.|... .....++|+|..|+-|.-.|+.. ++..+++.+.+... .-.+.
T Consensus 111 ~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~ 189 (476)
T PLN00028 111 TAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDA 189 (476)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444433333 233456566777888887643 34567899999888888888764 45566655544211 00000
Q ss_pred ccccCcccHHHHHHHHHHHHHHHHHHHHH
Q 008514 514 KCEGSICYFLTSMIMSGLCIVAVILSMIL 542 (563)
Q Consensus 514 ~C~G~~cy~~~f~i~~~~~~~~~~l~l~l 542 (563)
.+.+...+|.+|++.+.++++..++..++
T Consensus 190 ~~~~~~gWr~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 190 GAPSFTAWRIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 01112248999999888877665555443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00011 Score=78.93 Aligned_cols=137 Identities=13% Similarity=0.114 Sum_probs=95.1
Q ss_pred echHHHHHHhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh-cCchhHHHH
Q 008514 382 DNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVG 458 (563)
Q Consensus 382 ~n~~~i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~-~~~~~l~~~ 458 (563)
.....|.++.|.++.+ ...++..+...++.+.+|+++||++||+. +.....+.+++.++... .+...+++.
T Consensus 39 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~------l~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (426)
T PRK12307 39 YIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPL------MMWSIVAYSVGTGLSGLASGVIMLTLS 112 (426)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH------HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3445566678888664 37788999999999999999999987432 24444445555444433 334467778
Q ss_pred HHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhccCCC-CCCCCccccCcccHHHHHHHH
Q 008514 459 TLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMPR-VDEPLKCEGSICYFLTSMIMS 529 (563)
Q Consensus 459 ~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~~~~-~~~~~~C~G~~cy~~~f~i~~ 529 (563)
-.+.|++.|..+.....++.|.|..|+-++..|+...+..+|+.+.+... .-. + ...++..|++..
T Consensus 113 r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~--~---~~~w~~~f~i~~ 179 (426)
T PRK12307 113 RFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA--E---AYGWRAAFFVGL 179 (426)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc--c---cCCHHHHHHHHH
Confidence 88999999999999999999999999889988887666555555544210 000 0 123788887743
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.6e-05 Score=79.17 Aligned_cols=145 Identities=14% Similarity=0.114 Sum_probs=96.9
Q ss_pred chHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh-cCchhHHHHH
Q 008514 383 NLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGT 459 (563)
Q Consensus 383 n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~-~~~~~l~~~~ 459 (563)
....+.+++|.++.+. ..++..+...++.+..|+++||++||+. +.....+..++.+++.. .....+++..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (398)
T TIGR00895 39 AAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRV------LLWSILLFSVFTLLCALATNVTQLLILR 112 (398)
T ss_pred hHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHH------HHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 4555667788876543 6678889999999999999999987432 23333344444444333 3334567788
Q ss_pred HHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhh----chhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHH
Q 008514 460 LLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL----ANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVA 535 (563)
Q Consensus 460 ~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~----a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~ 535 (563)
.+.|++.|..+.....+++|++..++-++..|+... +..+|+.+.+.... ...|+..|.+.+.++++.
T Consensus 113 ~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--------~~g~~~~~~~~~~~~~~~ 184 (398)
T TIGR00895 113 FLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP--------VFGWRSLFYVGGIAPLLL 184 (398)
T ss_pred HHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh--------cccceeehhhhhhHHHHH
Confidence 899999999999999999999998888888887654 44444444432210 012677777776555555
Q ss_pred HHHHHH
Q 008514 536 VILSMI 541 (563)
Q Consensus 536 ~~l~l~ 541 (563)
.++...
T Consensus 185 ~~~~~~ 190 (398)
T TIGR00895 185 LLLLMR 190 (398)
T ss_pred HHHHHH
Confidence 444443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00011 Score=78.78 Aligned_cols=164 Identities=13% Similarity=0.031 Sum_probs=91.4
Q ss_pred CcccccccccHHHHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHH-HHHHHHHHHHHHHHHHHhcCCCC
Q 008514 30 GIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALL-VGALQNFIGYGWVWLIVTGRAPV 107 (563)
Q Consensus 30 Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~-iG~~~~~~Gy~~~~l~~~g~i~~ 107 (563)
...|.+..|.|...+++|++.++...+.....++.. ..+..|++.||+++|.... .+.+...++...+++...- . .
T Consensus 236 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~-~-~ 313 (402)
T TIGR00897 236 IGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQH-F-G 313 (402)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHc-c-C
Confidence 345777778888878899999987765444444544 3678899999999866543 3333222222222222111 1 1
Q ss_pred chHHHHHHHHHHhccCcchhhhhHHHHHHHhcCCCCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 008514 108 LPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMV 187 (563)
Q Consensus 108 ~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v 187 (563)
.+++.+..+.++.|.+.+.. ........+.+|++||++.|+.-....+++.+-..+...+.+.-...-...+.....++
T Consensus 314 ~~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i 392 (402)
T TIGR00897 314 HSFAVALIIAIALGIFLAGY-VPLAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVV 392 (402)
T ss_pred CcHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 13444333344344433322 22222233566899999999988888888766665665444332222222333344555
Q ss_pred HHhhheeec
Q 008514 188 VIALMFIIR 196 (563)
Q Consensus 188 ~l~~~~~vr 196 (563)
+.+..+|+|
T Consensus 393 ~~~~~~~~~ 401 (402)
T TIGR00897 393 SAFLTAFIR 401 (402)
T ss_pred HHHHHHHhc
Confidence 555566665
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=5e-05 Score=80.67 Aligned_cols=136 Identities=16% Similarity=0.158 Sum_probs=90.7
Q ss_pred HhhcHHHHHHHHHHHhhccchheeeechHH-HHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHH
Q 008514 357 ALIKADFWLIFFSLLLGSGSGLTVIDNLGQ-MSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 433 (563)
Q Consensus 357 ~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~-i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l 433 (563)
...+.++|.+++..++...+.-+...-+.. +.+++|.++.+. .++...+...++++.+|.++||++||+.. ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l----~~ 86 (392)
T PRK12382 11 SSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSA----LQ 86 (392)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHH----HH
Confidence 346778888877776654433334444443 456789887754 88999999999999999999999884421 21
Q ss_pred HH-HHHHHHHHHHHHhh------cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhc
Q 008514 434 AV-AQFVMAIGHIFLGM------GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLA 496 (563)
Q Consensus 434 ~~-~~~~~~~~~lll~~------~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a 496 (563)
.. ...+..++..+... .....+++.-.+.|++.+.........+.|.+..|+.++..|+..++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~ 156 (392)
T PRK12382 87 GMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMA 156 (392)
T ss_pred HHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHH
Confidence 11 11111111111111 11234667788899999988887888899999999999988876543
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0027 Score=68.46 Aligned_cols=183 Identities=17% Similarity=0.142 Sum_probs=104.1
Q ss_pred HHHHhhcHHHHHHHHHHHhhccchheeeechHHHH-HHhCCCch---h---HHHHHHHHHHhhhhhhhhhhhhhhhhhcC
Q 008514 354 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNT---H---IFVSMISIWNFLGRVGGGYFSEIIVRDYA 426 (563)
Q Consensus 354 ~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~-~~~g~~~~---~---~~Vsl~si~n~~GRl~~G~lsD~~~~~~~ 426 (563)
..+.+|+++||.+. .+.++..+.-.+..+--++. ++.--+.. + ...++=-+.....=.++.++-+|++.|+.
T Consensus 213 ~~~l~k~~~fw~~~-l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~ 291 (412)
T PF01306_consen 213 VLSLFKMRNFWFFV-LFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNL 291 (412)
T ss_dssp HHHHTTSHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhH
Confidence 35778999999864 44444444434443332322 23322221 1 13444444555555566666666655332
Q ss_pred CchhHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhh-hhchhhhhhhc
Q 008514 427 YPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL-TLANPAGSIFT 504 (563)
Q Consensus 427 ~~r~~~l~~~~~~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~-~~a~~vg~~l~ 504 (563)
+.++..++.+=...... .++..+.+.=.|=|+.++...--.==.+++.|..|-.++.|.+. .++..+|..++
T Consensus 292 ------Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~ 365 (412)
T PF01306_consen 292 ------LLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIIL 365 (412)
T ss_dssp ------HHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 23334444444444443 33445555666667777766655566778899988888999885 36666666666
Q ss_pred cCCC-CCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008514 505 SMPR-VDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 548 (563)
Q Consensus 505 ~~~~-~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r~ 548 (563)
+... .- +..=.|+.+|++++++.+..++++.+...++|+
T Consensus 366 s~~~G~l-----yd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 366 SPLAGYL-----YDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred hhhHHhh-----HhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 6221 00 001238899999999888888888887777665
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.9e-05 Score=80.73 Aligned_cols=149 Identities=10% Similarity=0.098 Sum_probs=95.9
Q ss_pred chHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhcC-chhHHHHH
Q 008514 383 NLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW-PGAMYVGT 459 (563)
Q Consensus 383 n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~-~~~l~~~~ 459 (563)
...++.+++|.+..+. ..+++.+...++.+++|+++||++||+. +.....+..++.++..... ...++...
T Consensus 41 ~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~------l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (455)
T TIGR00892 41 FFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPV------VIAGGLLASLGMILASFSSNVIELYLTA 114 (455)
T ss_pred hHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHH------HHhhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4667778888876543 6777888889999999999999988542 2233334444444443322 22344333
Q ss_pred -HHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHH
Q 008514 460 -LLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVIL 538 (563)
Q Consensus 460 -~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l 538 (563)
++.|++.|..+.....++.++|. |+-++..|+...+..+|..+.+.... .......||.+|++.+.+++++.++
T Consensus 115 ~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~----~l~~~~gwr~~f~~~~~~~~~~~v~ 189 (455)
T TIGR00892 115 GFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQ----YLFESFGWRGSFLILGGLLLHCCVC 189 (455)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHH----HHHHHhChHHHHHHHHHHHHHHHHH
Confidence 66799998776667778899996 77788888877665555444331100 0000123999999998888776655
Q ss_pred HHHH
Q 008514 539 SMIL 542 (563)
Q Consensus 539 ~l~l 542 (563)
.+++
T Consensus 190 ~~~~ 193 (455)
T TIGR00892 190 GALM 193 (455)
T ss_pred HHHh
Confidence 4443
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0015 Score=72.14 Aligned_cols=136 Identities=10% Similarity=0.007 Sum_probs=80.7
Q ss_pred HhcCccccccccc---HHHHhhhCCChhhHHHH-HHHHhhhhhhhhcchhhhc----cchhHHHHHH-HHHHHHHHHHHH
Q 008514 27 SCAGIGYLFGSIS---PVIKSSLNYNQKQIARL-GVAKDLGDSVGFLAGSLCE----VLPIWGALLV-GALQNFIGYGWV 97 (563)
Q Consensus 27 l~~Gt~Y~fS~ys---~~Lk~~lg~sq~~l~~i-~~a~~vG~~~gi~~G~l~D----~~gp~~~~~i-G~~~~~~Gy~~~ 97 (563)
...|..+.|++.. ++.-+.+|.+..+...+ ......+....++.|.+.| |+|+|.+.++ |++...+++.++
T Consensus 12 ~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll 91 (477)
T TIGR01301 12 VAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILI 91 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 4456667776644 34567899999999997 5555555566889999999 5999887666 455555555554
Q ss_pred HHHHh------cCCCC-chH---HHHHHHHHHhccCcchhhhhHHHHHHHhcCCC-C--CcchhhhHhhhhhhHHHHH
Q 008514 98 WLIVT------GRAPV-LPL---WAMCILIFVGNNGETYFNTAALVSCVQNFPKS-R--GPVVGILKGFAGLGGAILT 162 (563)
Q Consensus 98 ~l~~~------g~i~~-~s~---~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~~-R--G~~~Gl~~a~~GLSa~i~s 162 (563)
...-+ .+.+. ... +.......+...+.......+-.-....+|++ | +.+.+...-+.++|+.+-.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~ 169 (477)
T TIGR01301 92 GFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGY 169 (477)
T ss_pred HhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 32211 00000 011 11111222233344545555555566778753 3 6788888777788775554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.2e-05 Score=81.15 Aligned_cols=178 Identities=17% Similarity=0.206 Sum_probs=113.4
Q ss_pred hhcHHHHHHHHHHHhhccchheeeechHHHHH-HhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHH
Q 008514 358 LIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMA 434 (563)
Q Consensus 358 l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~ 434 (563)
+..+.+|+-++.+.++-..=.+.-.-..++.+ +++.++.+. .+++..+...++|+..|.+.||++.|+.. .
T Consensus 31 ~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~------~ 104 (462)
T PRK15034 31 IARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWT------V 104 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHH------H
Confidence 34568999888876654433333333444444 688887754 78899999999999999999999874422 2
Q ss_pred HHHHHHHHHHHHHhh------cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh----hchhhhhhhc
Q 008514 435 VAQFVMAIGHIFLGM------GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFT 504 (563)
Q Consensus 435 ~~~~~~~~~~lll~~------~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~----~a~~vg~~l~ 504 (563)
+..++..+..+++.. .+...+++.-.+.|++ |+.|......++++|-.|+.|+..|+.. ++..+++++.
T Consensus 105 ~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~ 183 (462)
T PRK15034 105 FSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVA 183 (462)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 222333334333332 2344688888999998 8899999999999999888999888873 3333332222
Q ss_pred c---------CCCCCCCCcccc-CcccHHHHHHHHHHHHHHHHHHHHH
Q 008514 505 S---------MPRVDEPLKCEG-SICYFLTSMIMSGLCIVAVILSMIL 542 (563)
Q Consensus 505 ~---------~~~~~~~~~C~G-~~cy~~~f~i~~~~~~~~~~l~l~l 542 (563)
+ ....+....-.| .--.+.++++...+++++.++.+++
T Consensus 184 p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 184 PLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 100000000011 2346777778877777777666655
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00013 Score=80.51 Aligned_cols=151 Identities=11% Similarity=0.045 Sum_probs=103.2
Q ss_pred eeechHHHHHHhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh-cCchhHH
Q 008514 380 VIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMY 456 (563)
Q Consensus 380 ~i~n~~~i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~-~~~~~l~ 456 (563)
+..-+.+|.++++.+..+ ..++.+.+..+.+.+.+|.++||++||+. +.....+..++.++... .+...+.
T Consensus 25 v~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~------l~~~~~~~~~~~~~~~~a~~~~~li 98 (495)
T PRK14995 25 LHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRL------LMLGGTLFGLASLAAAFSPTASWLI 98 (495)
T ss_pred HHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH------HHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 334467788889887654 47888999999999999999999988443 24444455555555443 3344667
Q ss_pred HHHHHHHhhhhhhcchhHHHHHHhh-ccCcchhhhhhhh----hchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHH
Q 008514 457 VGTLLIGLGYGAHWAIVPAAASELF-GLKKFGALYNFLT----LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGL 531 (563)
Q Consensus 457 ~~~~l~Gl~~G~~~~l~p~i~se~F-G~k~fg~nyg~~~----~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~ 531 (563)
++-.+.|++.|......-.++.+.| ..|+-++-.|+.. ++..+||.+.+...+ ...+|..|++...+
T Consensus 99 ~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~--------~~gwr~~f~i~~~~ 170 (495)
T PRK14995 99 ATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE--------HFYWGSVFLINVPI 170 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------cCChHHHHHHHHHH
Confidence 7778899999887766666677777 5677777777755 445555555443321 12389999998888
Q ss_pred HHHHHHHHHHHHh
Q 008514 532 CIVAVILSMILVH 544 (563)
Q Consensus 532 ~~~~~~l~l~l~~ 544 (563)
+++.+++......
T Consensus 171 ~~~~~~l~~~~l~ 183 (495)
T PRK14995 171 VLVVMGLTARYVP 183 (495)
T ss_pred HHHHHHHHHHhCC
Confidence 7777666655543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00015 Score=78.44 Aligned_cols=120 Identities=13% Similarity=0.066 Sum_probs=67.7
Q ss_pred cccccccccHH-HHhhhCCChhhHHHH-HHHHhhhhhhhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 008514 31 IGYLFGSISPV-IKSSLNYNQKQIARL-GVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVL 108 (563)
Q Consensus 31 t~Y~fS~ys~~-Lk~~lg~sq~~l~~i-~~a~~vG~~~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~ 108 (563)
..|.+..|-|+ +++++|+++++...+ ++...++...+++.|.+.||+++|.+..++.+...+....+...... .+.
T Consensus 258 ~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~-~~~- 335 (432)
T PRK10406 258 CFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQN-VSS- 335 (432)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHc-CCc-
Confidence 45666677666 567799999888774 44444445557788999999999887777665432222212111111 111
Q ss_pred hHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhh
Q 008514 109 PLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGF 153 (563)
Q Consensus 109 s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~ 153 (563)
++..+. +..++..+.++..........+.||. +||++.|+.-+.
T Consensus 336 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~ 380 (432)
T PRK10406 336 PYAAFG-LVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAV 380 (432)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHH
Confidence 222221 12222222222222222345689985 599999998654
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00076 Score=72.08 Aligned_cols=139 Identities=16% Similarity=0.180 Sum_probs=97.8
Q ss_pred HhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHhhhh
Q 008514 390 SLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYG 467 (563)
Q Consensus 390 ~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~~~~l~~~~~l~Gl~~G 467 (563)
++|.+..+. +--..++...+|-++.|+|.||++.|..+ +.....++.+....+....+..+++...++|+..|
T Consensus 282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl-----~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G 356 (438)
T COG2270 282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVL-----MIGLVILSIAALYLIFLEGELDFWILGLLVGTSLG 356 (438)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceee-----hHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcc
Confidence 578887764 44567788899999999999999775322 22222333333223333445568889999999999
Q ss_pred hhcchhHHHHHHhhccCcchhhhhhhhh----chhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHH
Q 008514 468 AHWAIVPAAASELFGLKKFGALYNFLTL----ANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 540 (563)
Q Consensus 468 ~~~~l~p~i~se~FG~k~fg~nyg~~~~----a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l 540 (563)
+..+.-=+..++..-.++-|+-||+..+ ++..||++++... +.++.-|..+.....+..++.++.+
T Consensus 357 ~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t-------~iTg~~r~g~~~i~vll~iGl~~L~ 426 (438)
T COG2270 357 GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVIT-------QITGSSRAGVLSIIVLLLIGLLLLL 426 (438)
T ss_pred hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHH-------HHhcchhhHHHHHHHHHHhhHhhEE
Confidence 9999999999999999999999998774 5778888877543 1123356777666666666655443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00029 Score=73.73 Aligned_cols=118 Identities=17% Similarity=0.123 Sum_probs=75.2
Q ss_pred HHHhhhCCChhhHHHHHHHHhh-hhhhhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 008514 41 VIKSSLNYNQKQIARLGVAKDL-GDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFV 119 (563)
Q Consensus 41 ~Lk~~lg~sq~~l~~i~~a~~v-G~~~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l 119 (563)
-+++.+|.+.++...+...... +....++.|++.||+|+|.++.++.+...+++..+.. . ++.|.+.....+
T Consensus 225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~ 297 (375)
T TIGR00899 225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA--D-----NSLWALLMLQLL 297 (375)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHH
Confidence 4567899999988775332222 2233578899999999998877776655555543221 1 134544444444
Q ss_pred hccCcchhhhhHHHHHHHhcCCCCCcchhhhHhhhhhhHHHHHHHH
Q 008514 120 GNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVY 165 (563)
Q Consensus 120 ~g~g~~~~~ta~l~t~~k~FP~~RG~~~Gl~~a~~GLSa~i~s~i~ 165 (563)
.|.+.+...........+.+|++||.+.|+......++..+-+.+.
T Consensus 298 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 343 (375)
T TIGR00899 298 NAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVG 343 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555566678899999999998766666655544444
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0001 Score=79.12 Aligned_cols=163 Identities=13% Similarity=0.155 Sum_probs=105.2
Q ss_pred HHHHHHHHhhccchheeeechHH-HHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHH
Q 008514 364 WLIFFSLLLGSGSGLTVIDNLGQ-MSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVM 440 (563)
Q Consensus 364 wll~~~~~~~~g~gl~~i~n~~~-i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~ 440 (563)
|.++...++...+.-++..=+.. +.+++|.++... ..++..+...+.++++|.++||++||+. +.....+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~------l~~~~~~~ 86 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPM------IVTGMLMR 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHH------HHHHHHHH
Confidence 44444444444444444444443 345678887653 6677788888889999999999987332 23344444
Q ss_pred HHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh----hchhhhhhhccCCCCCCCCcc
Q 008514 441 AIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMPRVDEPLKC 515 (563)
Q Consensus 441 ~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~----~a~~vg~~l~~~~~~~~~~~C 515 (563)
.++.++... .....+++..++.|++.|.......+++.|.+..++.++.+|+.. ++..+||.+.+...
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~------- 159 (400)
T PRK11646 87 AAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL------- 159 (400)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 445444433 334456677788899888777788888999999999999888864 45555555444321
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHH
Q 008514 516 EGSICYFLTSMIMSGLCIVAVILSMI 541 (563)
Q Consensus 516 ~G~~cy~~~f~i~~~~~~~~~~l~l~ 541 (563)
...++..|.+.+..+++..++..+
T Consensus 160 --~~g~~~~f~~~~~~~~~~~i~~~~ 183 (400)
T PRK11646 160 --QYDFRLVCATGAVLFVLAAAFNAW 183 (400)
T ss_pred --HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 113788998887776665544433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00015 Score=79.39 Aligned_cols=156 Identities=15% Similarity=0.165 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHhhccchheeeechHHHHHHhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHH
Q 008514 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF 438 (563)
Q Consensus 361 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~ 438 (563)
+.++.+++..++......+...-..++.+++|.++.+ ..++.+.+...++.+..|+++||++||+. +.....
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~------~~~~~~ 93 (496)
T PRK03893 20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLA------MVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HHHHHH
Confidence 4666777766665444444444556777888988764 37888999999999999999999988442 233334
Q ss_pred HHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhh----hhccCCCCCCCC
Q 008514 439 VMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGS----IFTSMPRVDEPL 513 (563)
Q Consensus 439 ~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~----~l~~~~~~~~~~ 513 (563)
+.+++.++... .+...+++...+.|++.|..+.....++.|+|..|+-++-.++...+..+|. .+.+....
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---- 169 (496)
T PRK03893 94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP---- 169 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 44444444333 3344677788899999999999999999999998888877777654444444 33332211
Q ss_pred ccccCcccHHHHHHHHH
Q 008514 514 KCEGSICYFLTSMIMSG 530 (563)
Q Consensus 514 ~C~G~~cy~~~f~i~~~ 530 (563)
...|+..|.+...
T Consensus 170 ----~~~w~~~f~~~~~ 182 (496)
T PRK03893 170 ----VWGWRALFFIGIL 182 (496)
T ss_pred ----cCCHHHHHHHHHH
Confidence 1247888876433
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00011 Score=79.50 Aligned_cols=148 Identities=11% Similarity=0.114 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhcCcccccccccHHHHhhhCCCh--------hhHHHHHHHHhhhh-hhhhcchhhhccchhHHHHHHH
Q 008514 16 WLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQ--------KQIARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLVG 86 (563)
Q Consensus 16 w~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq--------~~l~~i~~a~~vG~-~~gi~~G~l~D~~gp~~~~~iG 86 (563)
|..++...+++......| .|.+...++.|+++ ++...+.....++. ...++.|++.||+|+|.++.++
T Consensus 211 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~ 287 (418)
T TIGR00889 211 AIFFFFSMLLGAPLQITN---IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLS 287 (418)
T ss_pred eeHHHHHHHHHhHHHHHH---HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 344455555544443333 44455445567665 33344333333333 3467899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhH-hhhhhhHHHHHHH
Q 008514 87 ALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILK-GFAGLGGAILTQV 164 (563)
Q Consensus 87 ~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~-a~~GLSa~i~s~i 164 (563)
.+...+++.++.. .... ...++.+....++.|.+.+..+.+......+++| ++||++.|+.- ...++++.+-..+
T Consensus 288 ~~~~~v~~~l~~~--~~~~-~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l 364 (418)
T TIGR00889 288 LVAWALRFGFFAY--GDPE-YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYIL 364 (418)
T ss_pred HHHHHHHHHHHHH--cCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9887777654322 1110 1123444445566666666666676777789999 46999999995 5667776655555
Q ss_pred HHHhc
Q 008514 165 YTMIH 169 (563)
Q Consensus 165 ~~~~f 169 (563)
.-..+
T Consensus 365 ~G~l~ 369 (418)
T TIGR00889 365 SGVMV 369 (418)
T ss_pred HHHHH
Confidence 54333
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00026 Score=75.70 Aligned_cols=166 Identities=14% Similarity=0.198 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHhhccchheeeechHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHH
Q 008514 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF 438 (563)
Q Consensus 361 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~ 438 (563)
..-|.+.+.-|+....-.+...-+.+|++|++.+..++ .+|++++...+|-+....+.||+.|| .++....+
T Consensus 13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr------~lLl~~l~ 86 (394)
T COG2814 13 LALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERR------RLLLGLLA 86 (394)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchH------HHHHHHHH
Confidence 45566666777777777888899999999999997754 89999999999999999999998553 34566667
Q ss_pred HHHHHHHHHhhcC-chhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhh--------chhhhhhhccCCCC
Q 008514 439 VMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL--------ANPAGSIFTSMPRV 509 (563)
Q Consensus 439 ~~~~~~lll~~~~-~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~--------a~~vg~~l~~~~~~ 509 (563)
++.++.++.+..+ -..+.++=++.|++-|..|++...+.+|.=.+++-++-=+++++ +.++|.++...
T Consensus 87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~--- 163 (394)
T COG2814 87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL--- 163 (394)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH---
Confidence 7778877766544 45788899999999999999999999999999999988888764 33444443211
Q ss_pred CCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 008514 510 DEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVH 544 (563)
Q Consensus 510 ~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~ 544 (563)
. .+|.+|.+.+++.+++.+......-
T Consensus 164 ------~---GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 164 ------F---GWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred ------h---hHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1 2799999999998887766665555
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00046 Score=74.34 Aligned_cols=177 Identities=17% Similarity=0.202 Sum_probs=105.3
Q ss_pred HHHhhcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchhH----------HHHHHHHHHhh-hhhhhhhhhhhhhh
Q 008514 355 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI----------FVSMISIWNFL-GRVGGGYFSEIIVR 423 (563)
Q Consensus 355 ~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~~----------~Vsl~si~n~~-GRl~~G~lsD~~~~ 423 (563)
+.++-+.-=|.++=+-+-+.. -|.+.|.++.|..+.+. .--++.++..+ |-.+..+++|+++|
T Consensus 304 ~~Llgt~~~WFllDiafy~~n------L~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGR 377 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQN------LFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGR 377 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccc------cHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhh
Confidence 445555555655544443322 36778888887765421 12356666666 88899999999999
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHhhcC------ch--hHHH-HHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh
Q 008514 424 DYAYPRPVAMAVAQFVMAIGHIFLGMGW------PG--AMYV-GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT 494 (563)
Q Consensus 424 ~~~~~r~~~l~~~~~~~~~~~lll~~~~------~~--~l~~-~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~ 494 (563)
++- ...-+.++.+-++.++..- .+ .+|. .-.+--++=++.-.+. -+|.|-.|-=|+-||+-.
T Consensus 378 k~i------q~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfiv---paE~FParvR~t~hGIsA 448 (538)
T KOG0252|consen 378 KYI------QLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIV---PAEIFPARVRSTCHGISA 448 (538)
T ss_pred HHH------HHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEe---ehhhchHHHhhhhhhHHH
Confidence 553 2333333444333333211 11 1221 1122223333333343 478899999999999876
Q ss_pred ----hchhhhhhhccCCC-CCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 008514 495 ----LANPAGSIFTSMPR-VDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYS 551 (563)
Q Consensus 495 ----~a~~vg~~l~~~~~-~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r~~~~ 551 (563)
.+..+|.+.|+... +... . ...++.+|++..+++.++.+..+++- -+|++-.
T Consensus 449 A~GK~GAivg~~~F~~~t~~~yp---~-~~g~~~v~~i~~~~~~~gi~~T~l~p-Etk~~~l 505 (538)
T KOG0252|consen 449 ASGKAGAIVGAFGFLYLTDHNYP---P-NIGVRNVFIILAGCMLLGILFTLLIP-ETKGKSL 505 (538)
T ss_pred HhccchHHHHHHHhhHhhhccCC---c-cccchHHHHHHHHHHHHhHheeEEee-cccccCH
Confidence 46778888777543 1111 1 13489999999999999998888876 5665443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00032 Score=74.61 Aligned_cols=150 Identities=12% Similarity=0.065 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhcCcccccccccHHHHhhhCCChhhHHHH-HHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHH
Q 008514 16 WLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARL-GVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIG 93 (563)
Q Consensus 16 w~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i-~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~G 93 (563)
|..++...+.+...+..|.|. ++.++| .|++.+++..+ +....++..+ .+++|++.||+|+|..+.++.+....+
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~--~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~ 287 (390)
T TIGR02718 211 WSLLALALLSAMTAVSGFGLS--KLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--hHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 556666666677677777753 455665 79999999986 4444445545 568999999999988877776654333
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC--CCCCcchhhhHhhhhhhHHHHHHHHHHhc
Q 008514 94 YGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP--KSRGPVVGILKGFAGLGGAILTQVYTMIH 169 (563)
Q Consensus 94 y~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP--~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f 169 (563)
.. .+.........++.+.+.....+.+.+.+....+.....++..+ ++||+..++..+..+++..+-+.+.-..+
T Consensus 288 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~ 364 (390)
T TIGR02718 288 AL-LWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLT 364 (390)
T ss_pred HH-HHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 23322222111123333333333444444444455555567664 46899999999999998877766654443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00031 Score=74.72 Aligned_cols=144 Identities=14% Similarity=0.036 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHHHHHHHHHHHH
Q 008514 16 WLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNFIGY 94 (563)
Q Consensus 16 w~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy 94 (563)
|..++...+.+.+....|. |.++.-+++|++..+...+-....++.. .+++.|++.||+|+|..+.+|.+...+++
T Consensus 208 ~~~l~~~~l~~~~~~~~~~---~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~ 284 (382)
T TIGR00902 208 LRFLAAVCLIQGAHAAYYG---FSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRW 284 (382)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 5555555555655555444 4455555699999999886444555554 47789999999999999999999888887
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhH-hhhhhhHHHHHHHHHHhcC
Q 008514 95 GWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILK-GFAGLGGAILTQVYTMIHA 170 (563)
Q Consensus 95 ~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~-a~~GLSa~i~s~i~~~~f~ 170 (563)
..+. .. ++.|.+.....+-|.+-+....+++.-..++ | ++|++..|+.. ...|+|..+-+.+.-..++
T Consensus 285 ~~~~-----~~--~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~ 354 (382)
T TIGR00902 285 AIIG-----AI--EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP 354 (382)
T ss_pred HHHH-----hH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6532 12 2456666666777777777777777776676 7 46898899864 4678887777666654443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00023 Score=77.60 Aligned_cols=163 Identities=17% Similarity=0.118 Sum_probs=101.2
Q ss_pred HHhhccchheeeechHH-HHHHh--------CCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHH
Q 008514 370 LLLGSGSGLTVIDNLGQ-MSQSL--------GYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF 438 (563)
Q Consensus 370 ~~~~~g~gl~~i~n~~~-i~~~~--------g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~ 438 (563)
..+..|-...+++..-+ +.+.. +.++.+ ..++++.++..+|-+++|+++||++||+.. .+...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~------~~~~~ 93 (479)
T PRK10077 20 GGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL------KIAAV 93 (479)
T ss_pred HHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH------HHHHH
Confidence 33445555556665534 43433 444433 378999999999999999999999985532 23333
Q ss_pred HHHHHHHHHhh----------cC---chhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhcc
Q 008514 439 VMAIGHIFLGM----------GW---PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTS 505 (563)
Q Consensus 439 ~~~~~~lll~~----------~~---~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~ 505 (563)
+..++.++... .. ...+++.-++.|++.|..+...+.+++|++..|+-|+..|+...+..+|..+..
T Consensus 94 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~ 173 (479)
T PRK10077 94 LFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVY 173 (479)
T ss_pred HHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHH
Confidence 33334332221 11 124566778899999999999999999999999888888876655444444322
Q ss_pred ----C-CCCCCCCccccCcccHHHHHHHHHHHHHHHHHH
Q 008514 506 ----M-PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILS 539 (563)
Q Consensus 506 ----~-~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~ 539 (563)
. ........ .+...+|..|.+.+...++..++.
T Consensus 174 ~~~~~~~~~~~~~~-~~~~gWr~~f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 174 FVNYFIARSGDASW-LNTDGWRYMFASEAIPALLFLMLL 211 (479)
T ss_pred HHHHHHhccCcccc-cccCChHHHHHHHHHHHHHHHHHH
Confidence 0 11000000 112358999988776666655443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00051 Score=74.42 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=67.6
Q ss_pred cccccccccHHH-HhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHH-HHHHHHHHHHhcCCCC
Q 008514 31 IGYLFGSISPVI-KSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNF-IGYGWVWLIVTGRAPV 107 (563)
Q Consensus 31 t~Y~fS~ys~~L-k~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~-~Gy~~~~l~~~g~i~~ 107 (563)
..|....|.|.. ++.+|+++.|...+.....++..+ .+.+|++.||+|+|.+..++.+... .++...... .. .+
T Consensus 253 ~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~-~~-~~- 329 (434)
T PRK15075 253 SFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWL-VA-AP- 329 (434)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-Hc-CC-
Confidence 345566677774 556899998877766555555544 6678999999999888777654432 233221111 11 11
Q ss_pred chHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHh
Q 008514 108 LPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKG 152 (563)
Q Consensus 108 ~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a 152 (563)
+++.+....++.+.+.+...........+.+|+ .||++.|+.-+
T Consensus 330 -~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~ 374 (434)
T PRK15075 330 -SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYS 374 (434)
T ss_pred -chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHH
Confidence 222222212222233333333344556788885 59999998644
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00014 Score=82.09 Aligned_cols=174 Identities=13% Similarity=0.093 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHhhccchheeeech--HHHHHHhCCCchhH-HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHH
Q 008514 361 ADFWLIFFSLLLGSGSGLTVIDNL--GQMSQSLGYDNTHI-FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 437 (563)
Q Consensus 361 ~~Fwll~~~~~~~~g~gl~~i~n~--~~i~~~~g~~~~~~-~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~ 437 (563)
+++|++...+.+...+|.++.-++ .++.+++|++..+. .++-.+..-....+..|+++||+++|. .+.+..
T Consensus 25 ~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~------vllig~ 98 (591)
T PTZ00207 25 RRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRP------IFVLSM 98 (591)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH------HHHHHH
Confidence 456666666666666777665554 56777889987653 222223333455667899999997633 345555
Q ss_pred HHHHHHHHHHhhc-------CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhccCCC-C
Q 008514 438 FVMAIGHIFLGMG-------WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMPR-V 509 (563)
Q Consensus 438 ~~~~~~~lll~~~-------~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~~~~-~ 509 (563)
++..++.++.... ....+++.-++.|++-|..+......+.++|- ++-|.-.|+...+.++|+.+++... .
T Consensus 99 ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~ 177 (591)
T PTZ00207 99 TVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLA 177 (591)
T ss_pred HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655432 23356667778898888888888889999995 7779999998888888887655321 0
Q ss_pred CCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008514 510 DEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 548 (563)
Q Consensus 510 ~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r~ 548 (563)
- .. ..++..|++.+.+.++..++... ..|..+
T Consensus 178 l----~~--~~~~~~fl~l~vl~~vv~ll~~~-~vr~p~ 209 (591)
T PTZ00207 178 F----FS--DNTSAYFFFLMSFALVVGILAIV-FMRLPP 209 (591)
T ss_pred H----HH--HhHHHHHHHHHHHHHHHHHHHHh-heeCCc
Confidence 0 00 12566677666665554444443 344444
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00016 Score=75.69 Aligned_cols=139 Identities=14% Similarity=0.167 Sum_probs=91.9
Q ss_pred hHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 008514 384 LGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLL 461 (563)
Q Consensus 384 ~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~~~~l~~~~~l 461 (563)
+.++.+++|.++.+. ..++..+...++.+..|+++||++||+.. .....+..++.++....+...+++...+
T Consensus 23 lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (355)
T TIGR00896 23 LPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSV------AAGLLLIAAGILIRSAPGTALLFAGTAL 96 (355)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHH------HHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 456777888887654 78899999999999999999999885432 2222333344333323334456678888
Q ss_pred HHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhch----hhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHH
Q 008514 462 IGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLAN----PAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVA 535 (563)
Q Consensus 462 ~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~----~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~ 535 (563)
.|++.|......+.++.|+|. ++-++..|+...+. .+|+.+.+.... . .+ .-++..|.+.+.+++++
T Consensus 97 ~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~-~----~~-~~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 97 IGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQ-H----SG-GHWQQALAWWALPALLA 167 (355)
T ss_pred HHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHH-h----hh-hhHHHHHHHHHHHHHHH
Confidence 899999999999999999995 77787777765443 444433332110 0 11 12788887766554443
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00045 Score=77.78 Aligned_cols=173 Identities=16% Similarity=0.171 Sum_probs=117.2
Q ss_pred hhcHHHHHHHHHHHhhccch---hee-eechHHHHHHhCCCchh-HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHH
Q 008514 358 LIKADFWLIFFSLLLGSGSG---LTV-IDNLGQMSQSLGYDNTH-IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 432 (563)
Q Consensus 358 l~s~~Fwll~~~~~~~~g~g---l~~-i~n~~~i~~~~g~~~~~-~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~ 432 (563)
.++++|+..+.++.+..-+. +.. -+-+.+|.+++|-++.. -+.....+.++++-++.|-+||.+|||+ +
T Consensus 37 ~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~------~ 110 (599)
T PF06609_consen 37 YRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRY------F 110 (599)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchH------H
Confidence 36788888877666543322 222 22357788999877654 3667788999999999999999998844 4
Q ss_pred HHHHHHHHHHHHHHHhhcCc-hhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchh----hhhhhccCC
Q 008514 433 MAVAQFVMAIGHIFLGMGWP-GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANP----AGSIFTSMP 507 (563)
Q Consensus 433 l~~~~~~~~~~~lll~~~~~-~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~----vg~~l~~~~ 507 (563)
+....++..+|+.+.+.... ..+..+.++.|+++|... +....++|.--.|+-+.-+.+...... +|+.+....
T Consensus 111 ~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~ 189 (599)
T PF06609_consen 111 FIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLF 189 (599)
T ss_pred HHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHh
Confidence 56677777888777665443 357778999999998886 556679999998876544444332221 222221111
Q ss_pred CCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhh
Q 008514 508 RVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHR 545 (563)
Q Consensus 508 ~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R 545 (563)
. ..+.+|+.|++.+....+++++..+.+++
T Consensus 190 ~--------~~~~WRw~~~~~~i~~~i~~vl~~~fY~P 219 (599)
T PF06609_consen 190 A--------AHSGWRWIFYIFIIWSGIALVLIFFFYFP 219 (599)
T ss_pred c--------cCCCcchHHHHHHHHHHHHHHHHHHHhCC
Confidence 1 12358999999999888888776665544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00016 Score=87.73 Aligned_cols=137 Identities=12% Similarity=0.116 Sum_probs=92.1
Q ss_pred HHhhcHHHHHHHHHHHhhccchheeeechHHHHH-HhCCCchh----HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchh
Q 008514 356 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTH----IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 430 (563)
Q Consensus 356 ~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~----~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 430 (563)
+.+++++|+.++++.++......++..-+.+... +.+.+... ...+++.+...++.+.+|+++||++||+.+
T Consensus 4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l--- 80 (1146)
T PRK08633 4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVI--- 80 (1146)
T ss_pred chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHH---
Confidence 4678999999998888876555444333333332 34444322 256788888999999999999999885422
Q ss_pred HHHHHH-HHHHHHHHHHH-hhcCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhc
Q 008514 431 VAMAVA-QFVMAIGHIFL-GMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLA 496 (563)
Q Consensus 431 ~~l~~~-~~~~~~~~lll-~~~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a 496 (563)
..... ..+..+...+. .......+++.-++.|++.|.......++++|++..++.++..|+..++
T Consensus 81 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 147 (1146)
T PRK08633 81 -RIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAF 147 (1146)
T ss_pred -HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHH
Confidence 21111 11111111111 1233446777888899999999999999999999999999988887543
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00033 Score=74.63 Aligned_cols=146 Identities=12% Similarity=0.040 Sum_probs=97.3
Q ss_pred chHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh-cCchhHHHHH
Q 008514 383 NLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGT 459 (563)
Q Consensus 383 n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~-~~~~~l~~~~ 459 (563)
-+.++.+++|.++++. ..+.+.+...++.+..|+++||++||+- . ....+....+.+.... .+...+.+.=
T Consensus 13 ~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~-----~-~~~~~~~~~~~~~~~~~~~~~~l~~~R 86 (368)
T TIGR00903 13 VLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWF-----L-FGSLATFAAAAGRLLDPFNYEWLLACQ 86 (368)
T ss_pred hHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH-----H-HHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4566778889887754 7888999999999999999999987431 1 1222222222222222 2344677788
Q ss_pred HHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhccCCC---CCCCCccccCcccHHHHHHHHHHHHHHH
Q 008514 460 LLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMPR---VDEPLKCEGSICYFLTSMIMSGLCIVAV 536 (563)
Q Consensus 460 ~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~~~~---~~~~~~C~G~~cy~~~f~i~~~~~~~~~ 536 (563)
.+.|++.|....... .++|+|..|+-++..++...+..+|..+.+... .+ ...+|..|++.+.+.++..
T Consensus 87 ~l~G~g~~~~~~~~~-~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~-------~~gWr~~f~~~~~l~~~~~ 158 (368)
T TIGR00903 87 LLAALGQPFLLNAFA-PAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT-------AGGLQLLIIPIAAVAAAGI 158 (368)
T ss_pred HHHHhHhHHHHHHHH-HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccchHHHHHHHHHHHHHHH
Confidence 888999987544444 458999999999999988876666666554211 10 1238999999878777665
Q ss_pred HHHHHH
Q 008514 537 ILSMIL 542 (563)
Q Consensus 537 ~l~l~l 542 (563)
++..+.
T Consensus 159 ~~~~~~ 164 (368)
T TIGR00903 159 ILVLAA 164 (368)
T ss_pred HHHHHH
Confidence 554443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00086 Score=70.45 Aligned_cols=144 Identities=15% Similarity=0.119 Sum_probs=95.6
Q ss_pred ccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHH-HHHHHHHHHHHhcCCCCchHH
Q 008514 34 LFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQN-FIGYGWVWLIVTGRAPVLPLW 111 (563)
Q Consensus 34 ~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~-~~Gy~~~~l~~~g~i~~~s~~ 111 (563)
.=|..++.+.+..|.+..|..+++..-+.|+.+ ...+|+..|+.|+|.-..+-.+.. ..||+ +|.. |++.
T Consensus 96 ~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~i------s~~s--pnf~ 167 (528)
T KOG0253|consen 96 LLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVI------SGAS--PNFA 167 (528)
T ss_pred HHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHh------hcCC--CCee
Confidence 346788999999999999999999999999976 668999999999988644433321 13442 3443 3455
Q ss_pred HHHHHHHHhccCcchhhhhHHHHHHHhc-CC-CCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 008514 112 AMCILIFVGNNGETYFNTAALVSCVQNF-PK-SRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVV 188 (563)
Q Consensus 112 ~l~~~~~l~g~g~~~~~ta~l~t~~k~F-P~-~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~ 188 (563)
.+|++-.+.|.|.+. +. ...+----| |. +|++-+=.. +++..+..+-..+.-..-+.-...+++++..+|....
T Consensus 168 ~L~~f~~l~~~g~gg-~p-v~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~ 243 (528)
T KOG0253|consen 168 SLCVFRALWGFGVGG-LP-VDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFA 243 (528)
T ss_pred hhhHHHHHHhccCCC-cc-HhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHH
Confidence 667766666666665 22 233333344 74 688766555 8888887666666554444445667777766555443
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0004 Score=61.01 Aligned_cols=97 Identities=19% Similarity=0.210 Sum_probs=73.5
Q ss_pred hhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCC
Q 008514 66 VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRG 144 (563)
Q Consensus 66 ~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG 144 (563)
.+++.|.+.||+|+|..+.++.+...++....... .++|.+....++.|.+.+..++.......+.+|+ +|+
T Consensus 14 ~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 86 (141)
T TIGR00880 14 YSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-------SNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERG 86 (141)
T ss_pred HHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhh
Confidence 36788999999999999998888877776654321 2456666666667777777777777777899984 699
Q ss_pred cchhhhHhhhhhhHHHHHHHHHHhc
Q 008514 145 PVVGILKGFAGLGGAILTQVYTMIH 169 (563)
Q Consensus 145 ~~~Gl~~a~~GLSa~i~s~i~~~~f 169 (563)
.+.|+......++..+-..+.....
T Consensus 87 ~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 87 VALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred HHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 9999999888888877776665554
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00019 Score=63.04 Aligned_cols=132 Identities=11% Similarity=0.172 Sum_probs=86.5
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHH
Q 008514 401 SMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASE 479 (563)
Q Consensus 401 sl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se 479 (563)
+..++.+.++++..|++.||++||+. +.....+..++.++... .....+.....+.|++.|.........+.|
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPV------LLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIAD 78 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHH------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45678889999999999999977442 22333333344333332 333356667888999999999999999999
Q ss_pred hhccCcchhhhhhhhhchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHH
Q 008514 480 LFGLKKFGALYNFLTLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 542 (563)
Q Consensus 480 ~FG~k~fg~nyg~~~~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l 542 (563)
.+..++.++..++......+|..+.+.... .......|+..|.+....++++.+....+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 79 IYPPEERGVALGLMSAGIALGPLLGPPLGG----VLAQFLGWRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred HCChhhhhHHHHHHHHhHHHHHHHhHHhHH----HHhcccchHHHHHHHHHHHHHHHHHHhhc
Confidence 999998888888876544444443332110 00011247888888877777666555443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00036 Score=74.16 Aligned_cols=128 Identities=14% Similarity=0.132 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhhccchheeeechHH-HHHHhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHH
Q 008514 361 ADFWLIFFSLLLGSGSGLTVIDNLGQ-MSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 437 (563)
Q Consensus 361 ~~Fwll~~~~~~~~g~gl~~i~n~~~-i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~ 437 (563)
++|..+.+..++....--+...-+.. +.+++|.++.+ ...++..+...++.+.+|.++||++||+.. ....
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l------~~~~ 88 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAV------VFGL 88 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchH------HHHH
Confidence 44444444443333222223333443 45678887765 378899999999999999999999885543 2222
Q ss_pred HHHHHHHH---HHhh-cC-----chhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhh
Q 008514 438 FVMAIGHI---FLGM-GW-----PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT 494 (563)
Q Consensus 438 ~~~~~~~l---ll~~-~~-----~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~ 494 (563)
++.+++.+ +... .. ...+++.-.+.|++.|.........+.|.+..|+.++.-++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 154 (399)
T PRK05122 89 CGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNG 154 (399)
T ss_pred HHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhh
Confidence 22222211 1111 11 1246667789999999998888888999998899888877654
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00063 Score=75.32 Aligned_cols=146 Identities=14% Similarity=0.228 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHhcCcccccccccHHHHhhhCCChhhHHHHH-HHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHH
Q 008514 15 RWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLG-VAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFI 92 (563)
Q Consensus 15 Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~-~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~ 92 (563)
.|..++...+.++.....+. ...+-+.+.+|+|.++...+. ....++... ++.+|.+.||+|+|..+.++++...+
T Consensus 224 ~~~~ll~~~l~~~~~~~~~~--~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l 301 (491)
T PRK11010 224 AWLILLLIVLYKLGDAFAMS--LTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGV 301 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 36665555555544433333 334556778999999999874 555555544 67899999999987776666655444
Q ss_pred HHHHHHH-HHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHHH
Q 008514 93 GYGWVWL-IVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYT 166 (563)
Q Consensus 93 Gy~~~~l-~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~~ 166 (563)
+...++. ...+ ++.+.+....++...+.++...+.....+...|+ .+|+..|+.-+..++++.+.+.+.-
T Consensus 302 ~~l~~~~l~~~~----~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G 373 (491)
T PRK11010 302 SNAGYWLLSITD----KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAG 373 (491)
T ss_pred HHHHHHHHHhcc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433332 2221 1334333222222222233334445555555665 4788999988888888877766543
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00046 Score=72.02 Aligned_cols=121 Identities=10% Similarity=-0.002 Sum_probs=75.7
Q ss_pred HhcCcccccccccHHHH-hhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHH-HHHHHHHHHHhc
Q 008514 27 SCAGIGYLFGSISPVIK-SSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNF-IGYGWVWLIVTG 103 (563)
Q Consensus 27 l~~Gt~Y~fS~ys~~Lk-~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~-~Gy~~~~l~~~g 103 (563)
++....|.+..|-+..- +++|+++.+...+.....++..+ .++.|++.||+|+|..+.++..... .++.... ....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 308 (394)
T TIGR00883 230 ATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLM-ALLD 308 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 33444566666666654 78999999888865555555544 6689999999999887665554332 2322221 1222
Q ss_pred CCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhH
Q 008514 104 RAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILK 151 (563)
Q Consensus 104 ~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~ 151 (563)
. .+.+.+....++.|.+.+..++.......+.+|+ +||++.|+..
T Consensus 309 ~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 354 (394)
T TIGR00883 309 S---GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAY 354 (394)
T ss_pred C---CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehh
Confidence 1 1345444444555555566666777777889985 5999988753
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00093 Score=70.96 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHH
Q 008514 16 WLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGY 94 (563)
Q Consensus 16 w~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy 94 (563)
|..++...+.+.+.+..|. |.++.-+++|+++.+...+-....++... +++.|++.||+++|..+.++.+...+++
T Consensus 208 ~~~~~~~~l~~~~~~~~~~---~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~ 284 (382)
T PRK11128 208 WRFLLCVSLLQGSHAAYYG---FSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRW 284 (382)
T ss_pred HHHHHHHHHHHHHhHhHHH---HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 4455555666665554443 33455466899999888864445555543 6889999999999999888888776666
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCCCCCcchhhhH
Q 008514 95 GWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILK 151 (563)
Q Consensus 95 ~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~~RG~~~Gl~~ 151 (563)
.... ..+ +.|.+....++-|.+.+..+.+.+....+.-|+++|.+.|+.-
T Consensus 285 ~~~~-----~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (382)
T PRK11128 285 GLMG-----STT--ALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYS 334 (382)
T ss_pred HHHH-----hhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHH
Confidence 5432 122 3555555566666766766677676666665678888888764
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00064 Score=69.06 Aligned_cols=138 Identities=19% Similarity=0.213 Sum_probs=89.9
Q ss_pred cHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHH
Q 008514 360 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 436 (563)
Q Consensus 360 s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~ 436 (563)
.+.||+++.+.++-.-+-.-.|.--.-.-++ .|.++.++ ..|+.-.-+..--.+.|.++|+.+++. |+.+-+
T Consensus 263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~-----~wv~~a 337 (459)
T KOG4686|consen 263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL-----WWVASA 337 (459)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhccee-----hhHHHH
Confidence 5789999988877544433333322233444 48876542 555555555666788999999998843 344556
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHhhhhh----hcchhHHHHHHhhccCcchhhhhhhh----hchhhhhhhccCC
Q 008514 437 QFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGA----HWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMP 507 (563)
Q Consensus 437 ~~~~~~~~lll~~~~~~~l~~~~~l~Gl~~G~----~~~l~p~i~se~FG~k~fg~nyg~~~----~a~~vg~~l~~~~ 507 (563)
.+....++..+.+... .-|.+..+.|++|-- .|...|.++.|+ ..|+-||++. ++-.+-|++.+..
T Consensus 338 ~~~tl~~H~~l~Ft~l-sPy~~m~~lGLsysllAcslWP~va~~vpE~----qLGTaygf~qsIqNLgla~i~Iiag~i 411 (459)
T KOG4686|consen 338 CILTLLGHSGLFFTFL-SPYTSMTFLGLSYSLLACSLWPCVASLVPEE----QLGTAYGFIQSIQNLGLAFIPIIAGFI 411 (459)
T ss_pred HHHHHHHhhhHHhhhc-cHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH----HhcchHHHHHHHHhhhhhHHhhhhhee
Confidence 6667777766554442 246688888999875 566777777775 6777777765 5666666665543
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00034 Score=73.15 Aligned_cols=117 Identities=14% Similarity=0.143 Sum_probs=79.5
Q ss_pred ccHHHHhhhCCChhhHHHH-HHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcC----CCCchHH
Q 008514 38 ISPVIKSSLNYNQKQIARL-GVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGR----APVLPLW 111 (563)
Q Consensus 38 ys~~Lk~~lg~sq~~l~~i-~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~----i~~~s~~ 111 (563)
+.+-+++ +|++.++...+ ++.+.++... .+++|++.||+|+|..+.++.+...+++..+....... ++.++.|
T Consensus 232 ~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (356)
T TIGR00901 232 TTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLL 310 (356)
T ss_pred HHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHH
Confidence 3344555 99999998875 4555444433 67789999999998888888887766666443221111 1112456
Q ss_pred HHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhh
Q 008514 112 AMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAG 155 (563)
Q Consensus 112 ~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~G 155 (563)
.+....++.+.+.+..+.+...-..+.+| ++||++-|+..+..+
T Consensus 311 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 311 MLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 55555566677778888888888999998 469999888766544
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00011 Score=80.91 Aligned_cols=142 Identities=15% Similarity=0.186 Sum_probs=99.2
Q ss_pred HHHHHHhCCC---ch--hHHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh-cCchhHHHH
Q 008514 385 GQMSQSLGYD---NT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVG 458 (563)
Q Consensus 385 ~~i~~~~g~~---~~--~~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~-~~~~~l~~~ 458 (563)
.+|.++.+.+ +. ....+++.++..+|.+++|+++||++||+. +.+..++..++.++... .....+++.
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~------~~~~~~~~~i~~~~~~~~~~~~~~~~~ 186 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKV------LLLSTLVTAVSGVLTAFSPNYTVFLVF 186 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHH------HHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 4456666665 33 247889999999999999999999988432 23334444444444433 334467778
Q ss_pred HHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhccCCC-CCCCCccccCcccHHHHHHHHHHHHHHHH
Q 008514 459 TLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMPR-VDEPLKCEGSICYFLTSMIMSGLCIVAVI 537 (563)
Q Consensus 459 ~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~~~~-~~~~~~C~G~~cy~~~f~i~~~~~~~~~~ 537 (563)
-.+.|++.|+.+.....+++|+++.|+-+...++...+..+|..+.+... - ...+|..|++.+..+++..+
T Consensus 187 r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~--------~~~wr~~~~~~~i~~~~~~~ 258 (505)
T TIGR00898 187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYF--------IPDWRWLQLAVSLPTFLFFL 258 (505)
T ss_pred HHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999888877777666666655444221 0 01189999888877766655
Q ss_pred HHH
Q 008514 538 LSM 540 (563)
Q Consensus 538 l~l 540 (563)
+.+
T Consensus 259 ~~~ 261 (505)
T TIGR00898 259 LSW 261 (505)
T ss_pred HHH
Confidence 553
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00054 Score=83.36 Aligned_cols=174 Identities=10% Similarity=0.090 Sum_probs=103.1
Q ss_pred HHhhcHHHHHHHHHHHhhccchheeeechHHHHH-HhCCCc----hh---HHHHHHHHHHhhhhhhhhhhhhhhhhhcCC
Q 008514 356 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDN----TH---IFVSMISIWNFLGRVGGGYFSEIIVRDYAY 427 (563)
Q Consensus 356 ~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~----~~---~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~ 427 (563)
+++|+++|+.+|+..++....--+.-..+..+.. .+..+. .. ...+++.+...+.-+++|+++||++||+-.
T Consensus 6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~ 85 (1140)
T PRK06814 6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA 85 (1140)
T ss_pred hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence 5789999999998887765432222222222221 222111 11 245567777888899999999999885421
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhh----chhhhhhh
Q 008514 428 PRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL----ANPAGSIF 503 (563)
Q Consensus 428 ~r~~~l~~~~~~~~~~~lll~~~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~----a~~vg~~l 503 (563)
. +..........++.+.+.......+++...+.|++.+..+...-+++.|+|..+..++..|++.. +..+||.+
T Consensus 86 ~--~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l 163 (1140)
T PRK06814 86 K--ILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTII 163 (1140)
T ss_pred H--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHH
Confidence 0 11111112222222222224445788899999999999999999999999999999998888764 44444444
Q ss_pred ccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHH
Q 008514 504 TSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILS 539 (563)
Q Consensus 504 ~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~ 539 (563)
.+.... ...++..|.+.....+++.++.
T Consensus 164 ~g~l~~--------~~~~~~~~~~~~~~~~~~~~~~ 191 (1140)
T PRK06814 164 GGLATI--------SGNFVILVALLMGIAVLGWLAS 191 (1140)
T ss_pred HHHHHh--------ccccHHHHHHHHHHHHHHHHHH
Confidence 442210 1236777744433334333333
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0014 Score=71.34 Aligned_cols=131 Identities=11% Similarity=0.064 Sum_probs=72.3
Q ss_pred ccccccccHH-HHhhhCCChhhHHHHHHHHhhh-hhhhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 008514 32 GYLFGSISPV-IKSSLNYNQKQIARLGVAKDLG-DSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLP 109 (563)
Q Consensus 32 ~Y~fS~ys~~-Lk~~lg~sq~~l~~i~~a~~vG-~~~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s 109 (563)
.|....|.+. +++.+|++.++...++....+. ....++.|++.||+|+|.+..++.++..++...++..... ..+
T Consensus 266 ~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~---~~~ 342 (438)
T PRK09952 266 MYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEA---QSI 342 (438)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc---CCh
Confidence 3444444444 4677899988665544333332 2335678999999999888777766554444333322222 112
Q ss_pred HHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhh-hhhhHHHHHHHH
Q 008514 110 LWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGF-AGLGGAILTQVY 165 (563)
Q Consensus 110 ~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~-~GLSa~i~s~i~ 165 (563)
.+.+.+..++.+.+.++..........+.||. +|+++.|+.-.. ..+++.+-..+.
T Consensus 343 ~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~ 400 (438)
T PRK09952 343 FWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIA 400 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34333333444444444444444455688985 688888885433 224544444333
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00039 Score=75.71 Aligned_cols=142 Identities=21% Similarity=0.394 Sum_probs=102.3
Q ss_pred hCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhc---CchhHHHHHHHHHhh
Q 008514 391 LGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG---WPGAMYVGTLLIGLG 465 (563)
Q Consensus 391 ~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~---~~~~l~~~~~l~Gl~ 465 (563)
+|++.+++ .++.++-...+--++.||++||+.-+++ .+++..+++.+|++++... .+..++++.++++++
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~-----tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG 130 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR-----TIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVG 130 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH-----HHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhc
Confidence 56877654 7888888888999999999999833222 2366677788999888755 356899999999999
Q ss_pred hhhhcchhHHHHHHhhccCc------chhhhhhhhhchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHH
Q 008514 466 YGAHWAIVPAAASELFGLKK------FGALYNFLTLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILS 539 (563)
Q Consensus 466 ~G~~~~l~p~i~se~FG~k~------fg~nyg~~~~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~ 539 (563)
+|..=+-...++.|.+..++ |+.-|=.+.+++.++|++.++.. ...||+..|-+++.-..++++..
T Consensus 131 ~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~--------~~~g~~~gF~~aavGm~~gl~~f 202 (498)
T COG3104 131 TGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLA--------INYGWHVGFGLAAVGMIIGLVIF 202 (498)
T ss_pred cccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHH--------HhhCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999765 33333333455555555544332 12458988888877777776665
Q ss_pred HHHHhh
Q 008514 540 MILVHR 545 (563)
Q Consensus 540 l~l~~R 545 (563)
+..+++
T Consensus 203 ~~~~r~ 208 (498)
T COG3104 203 LLGRRH 208 (498)
T ss_pred HHccch
Confidence 554444
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0022 Score=71.01 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=81.6
Q ss_pred cccccccccHHHHhhhCCChhhHH----------HH--HHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHH
Q 008514 31 IGYLFGSISPVIKSSLNYNQKQIA----------RL--GVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWV 97 (563)
Q Consensus 31 t~Y~fS~ys~~Lk~~lg~sq~~l~----------~i--~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~ 97 (563)
..|.-..|.|.+-++.|++..+.+ .+ .....++... .+..+.+.||+|+|.+++++.+...++...+
T Consensus 303 ~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l 382 (502)
T TIGR00887 303 AFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVL 382 (502)
T ss_pred HHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Confidence 456777888888888898754211 11 2223334433 4678999999999999888887766665544
Q ss_pred HHHHhcCCCCchHHHHH-HHHHHhccCcchhhhhHHHHHHHhcCCC-CCcchhhhHhhhhhhHHHHHHHHHHhcC
Q 008514 98 WLIVTGRAPVLPLWAMC-ILIFVGNNGETYFNTAALVSCVQNFPKS-RGPVVGILKGFAGLGGAILTQVYTMIHA 170 (563)
Q Consensus 98 ~l~~~g~i~~~s~~~l~-~~~~l~g~g~~~~~ta~l~t~~k~FP~~-RG~~~Gl~~a~~GLSa~i~s~i~~~~f~ 170 (563)
...... .+......++ ++.+..+.|.. .....-..+-||.+ ||++.|+.....-+++++.+.++....+
T Consensus 383 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~ 453 (502)
T TIGR00887 383 GFAYNH-LSTHGFLAIYVLAQFFANFGPN---ATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQ 453 (502)
T ss_pred HHHHHh-cchhHHHHHHHHHHHHHhcCCC---chhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhc
Confidence 333221 1111111111 22222222211 11222246889965 9999999999988998888777766655
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0013 Score=71.88 Aligned_cols=178 Identities=12% Similarity=0.101 Sum_probs=123.3
Q ss_pred HHHHHHHHhhccchheeeechH----HHHHHhCCCchh---HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHH
Q 008514 364 WLIFFSLLLGSGSGLTVIDNLG----QMSQSLGYDNTH---IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 436 (563)
Q Consensus 364 wll~~~~~~~~g~gl~~i~n~~----~i~~~~g~~~~~---~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~ 436 (563)
|..-..+.|.-|.--.+=.|.+ +|.+++|.++++ ...+.+..+-.+..+.+|+++||++.|+ ++ .+.
T Consensus 25 W~~~~~~lC~fGF~~e~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~-----vL-~l~ 98 (511)
T TIGR00806 25 WRVLVLYLCFYGFMAQFRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKP-----VL-VLQ 98 (511)
T ss_pred hhHHHHHHHHHHHHHHhhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchH-----HH-HHH
Confidence 5555554554444433333433 455578998877 3789999999999999999999996633 22 222
Q ss_pred HHHHHHHHHHHhhc-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhccCCCCCCCCcc
Q 008514 437 QFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMPRVDEPLKC 515 (563)
Q Consensus 437 ~~~~~~~~lll~~~-~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~~~~~~~~~~C 515 (563)
.+.-.+..+++... ....+.+.=++.|++-|+.+ .+-.+++++|-.|++++-.++...+..+|..+.+....- ..=
T Consensus 99 ~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql--l~s 175 (511)
T TIGR00806 99 ALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL--LVT 175 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHh
Confidence 23233333333332 23467778889999999999 999999999999999999998876555555544411100 000
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 008514 516 EGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVY 550 (563)
Q Consensus 516 ~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r~~~ 550 (563)
.|...|+.-.+|..+..+++++++++|=..+|..|
T Consensus 176 ~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~ 210 (511)
T TIGR00806 176 LGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLF 210 (511)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhh
Confidence 35677999999999999999999999987777655
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.15 Score=54.81 Aligned_cols=147 Identities=19% Similarity=0.231 Sum_probs=86.9
Q ss_pred CCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHh--hcCchhHHHHHHHHHhhhh
Q 008514 392 GYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG--MGWPGAMYVGTLLIGLGYG 467 (563)
Q Consensus 392 g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~--~~~~~~l~~~~~l~Gl~~G 467 (563)
|++..+ .+-++.+.+..+|=+..|++..|-.++ .|....-......+...+.++ ..++..+..+..++|++.|
T Consensus 240 gmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~---~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G 316 (403)
T PF03209_consen 240 GMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGK---KRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNG 316 (403)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhh
Confidence 566543 377888888899999999887632221 222211111122222222222 2335578889999999999
Q ss_pred hhcchhHHHHHHhhccCcchhhhhhhh----hchhhhhhhccCC----C--CCCCCccccCcccHHHHHHHHHHHHHHHH
Q 008514 468 AHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTSMP----R--VDEPLKCEGSICYFLTSMIMSGLCIVAVI 537 (563)
Q Consensus 468 ~~~~l~p~i~se~FG~k~fg~nyg~~~----~a~~vg~~l~~~~----~--~~~~~~C~G~~cy~~~f~i~~~~~~~~~~ 537 (563)
..-.-.-+...|.=..++-|.-=|... ++.++|..+.+.. + .+.+ -.--|...|.+=+.+.++++.
T Consensus 317 ~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~----~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 317 LFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNS----PALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred HHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----cchHHHHHHHHHHHHHHHHHH
Confidence 988877888888887777775544432 4555555554421 1 1100 023588888888777777666
Q ss_pred HHHHHHhh
Q 008514 538 LSMILVHR 545 (563)
Q Consensus 538 l~l~l~~R 545 (563)
+...+.++
T Consensus 393 ll~~l~~~ 400 (403)
T PF03209_consen 393 LLGRLDRR 400 (403)
T ss_pred HHHHhhhh
Confidence 65555444
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0018 Score=69.28 Aligned_cols=122 Identities=16% Similarity=0.332 Sum_probs=72.3
Q ss_pred ccHHHHhhhCCChhhHHHHH-HHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 008514 38 ISPVIKSSLNYNQKQIARLG-VAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCI 115 (563)
Q Consensus 38 ys~~Lk~~lg~sq~~l~~i~-~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~ 115 (563)
..+.+.+.+|+++++...+. ..+.++..+ ++++|++.||+|+|..+.++.+...+....++..... ++ +.|.+..
T Consensus 232 ~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~--~~-~~~~~~~ 308 (402)
T PRK11902 232 STTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT--PK-HLWTMAL 308 (402)
T ss_pred HHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc--CC-cHHHHHH
Confidence 34557788999999998863 444444444 6789999999998877766665544444333221111 11 2343332
Q ss_pred HH----HHhccCcchhhhhHHHHHHHhcCCCCCcchhhhHhhhhhhHHHHHHHH
Q 008514 116 LI----FVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVY 165 (563)
Q Consensus 116 ~~----~l~g~g~~~~~ta~l~t~~k~FP~~RG~~~Gl~~a~~GLSa~i~s~i~ 165 (563)
.. +..|.+.+..++..+..+.+.+|.+ ..++..+..++|..+.+.+.
T Consensus 309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~ 359 (402)
T PRK11902 309 AIGIENLCGGMGTAAFVALLMALCNRSFSAT---QYALLSALASVGRVYVGPTS 359 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHHHHHHHHHHH
Confidence 22 3455555656666677777777743 23444555566666555544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0018 Score=69.96 Aligned_cols=137 Identities=14% Similarity=0.094 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhhccchheeee-chHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHH
Q 008514 362 DFWLIFFSLLLGSGSGLTVID-NLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF 438 (563)
Q Consensus 362 ~Fwll~~~~~~~~g~gl~~i~-n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~ 438 (563)
.|+++...+++ .|....+.+ -..++.++.+.++.+. ..+...++..++.+..|++.||++||+. +.+..+
T Consensus 4 ~~~~~~~~f~~-~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~------~~~g~~ 76 (410)
T TIGR00885 4 PFALITSLFAL-WGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAG------ILLGLF 76 (410)
T ss_pred HHHHHHHHHHH-HHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH------HHHHHH
Confidence 35555444433 333433332 3344555678887653 7788999999999999999999988443 344455
Q ss_pred HHHHHHHHHhh----cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhh----hhchhhhhhhcc
Q 008514 439 VMAIGHIFLGM----GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL----TLANPAGSIFTS 505 (563)
Q Consensus 439 ~~~~~~lll~~----~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~----~~a~~vg~~l~~ 505 (563)
+.+++.+++.. .....+.....+.|++.|.......+.+.+....|+.++.-++. .++..+|+.+.+
T Consensus 77 l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~ 151 (410)
T TIGR00885 77 LYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQ 151 (410)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666555422 12335666788899999999988888888776656656555543 355555555544
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0011 Score=72.36 Aligned_cols=139 Identities=11% Similarity=0.083 Sum_probs=92.4
Q ss_pred hCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHH--hh-cCchhHHHHHHHHHhh
Q 008514 391 LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFL--GM-GWPGAMYVGTLLIGLG 465 (563)
Q Consensus 391 ~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll--~~-~~~~~l~~~~~l~Gl~ 465 (563)
.+.+... ...+.+.++..++.+..|+++||+++|+.. ....++..++.++. .. .....+++.-++.|++
T Consensus 71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~ 144 (465)
T TIGR00894 71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSI------GIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLA 144 (465)
T ss_pred CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhh------HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHh
Confidence 3444443 378889999999999999999999885533 22233333333332 21 2233567778889999
Q ss_pred hhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhcc----CCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 008514 466 YGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTS----MPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 541 (563)
Q Consensus 466 ~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~----~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~ 541 (563)
.|..+...+.+++|+|..|+-|+-.|+...+..+|+.+.+ .... ....++..|++.+.+.++..++...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~-------~~~gw~~~f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCE-------SWGGWPMIFYVFGIVGCAWSLLWFV 217 (465)
T ss_pred cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccCCCCeehhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999988887654444444333 2110 0024888998887766555444443
Q ss_pred H
Q 008514 542 L 542 (563)
Q Consensus 542 l 542 (563)
+
T Consensus 218 ~ 218 (465)
T TIGR00894 218 F 218 (465)
T ss_pred H
Confidence 3
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0011 Score=75.71 Aligned_cols=148 Identities=17% Similarity=0.214 Sum_probs=97.9
Q ss_pred HHHHHHhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhcC-----------
Q 008514 385 GQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW----------- 451 (563)
Q Consensus 385 ~~i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~----------- 451 (563)
.+|-++.+.+..+ ..+|.+.+++.++.+..|++.||.+|++.+ .+..++++++.++++..+
T Consensus 57 ~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i------~~g~ll~~lg~ll~alphf~~~~y~~~~~ 130 (633)
T TIGR00805 57 TTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVI------GIGCAIMGLGSFLLSLPHFLSGRYSYSTT 130 (633)
T ss_pred hhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEE------EecHHHHHHHHHHHhChHHhcCCcccccc
Confidence 3455556777664 388999999999999999999998774433 333444555554443210
Q ss_pred -----------------------------------------chhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhh
Q 008514 452 -----------------------------------------PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALY 490 (563)
Q Consensus 452 -----------------------------------------~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~ny 490 (563)
...++++-++.|++.|..+.+.+.++.|++..|+-+...
T Consensus 131 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~ 210 (633)
T TIGR00805 131 VSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYI 210 (633)
T ss_pred ccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHH
Confidence 123567889999999999999999999999999988888
Q ss_pred hhhhh----chhhhhhhccCC---CCC------C-----CCccccCcccHHHHHHHHHHHHHHHHH
Q 008514 491 NFLTL----ANPAGSIFTSMP---RVD------E-----PLKCEGSICYFLTSMIMSGLCIVAVIL 538 (563)
Q Consensus 491 g~~~~----a~~vg~~l~~~~---~~~------~-----~~~C~G~~cy~~~f~i~~~~~~~~~~l 538 (563)
|++.. ++.+|+.+.+.. ..| + ..+-.-.+.++..|++.+.+.++..+.
T Consensus 211 ~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~ 276 (633)
T TIGR00805 211 GILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP 276 (633)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 87764 444444433311 000 0 000000135788898888777665544
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0039 Score=68.79 Aligned_cols=164 Identities=15% Similarity=0.133 Sum_probs=97.7
Q ss_pred eeechHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhcCc-----
Q 008514 380 VIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWP----- 452 (563)
Q Consensus 380 ~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~~----- 452 (563)
...++.++.+++|.++... ...+-.+...+..++.|++|||...|++-.|++.+.. ....+++.+++.....
T Consensus 23 ~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g-~~~~~~~l~ll~~~~~~~~~~ 101 (477)
T TIGR01301 23 QLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAG-AALVAFAVILIGFAADIGHLF 101 (477)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHH-HHHHHHHHHHHHhCchhhhhc
Confidence 4567888999999987643 6677888899999999999996333333345554332 2223333333322110
Q ss_pred -------------hhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcc--hhhhhhhh----hchhhhhhhccCC------
Q 008514 453 -------------GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKF--GALYNFLT----LANPAGSIFTSMP------ 507 (563)
Q Consensus 453 -------------~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~f--g~nyg~~~----~a~~vg~~l~~~~------ 507 (563)
..+.++..+..++......-+.++++|.+..++- +.-+++.. +|..+|+.+.+..
T Consensus 102 ~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~ 181 (477)
T TIGR01301 102 GDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIF 181 (477)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence 1122233445567888888889999999997743 44555433 3444444433321
Q ss_pred CCCCCCcc-ccCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 008514 508 RVDEPLKC-EGSICYFLTSMIMSGLCIVAVILSMILVH 544 (563)
Q Consensus 508 ~~~~~~~C-~G~~cy~~~f~i~~~~~~~~~~l~l~l~~ 544 (563)
.-..+..| .-...|+..|++.+.+.+++++++++..+
T Consensus 182 ~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~ 219 (477)
T TIGR01301 182 PFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVK 219 (477)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 00001122 22345899999998888887777766543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.073 Score=58.38 Aligned_cols=115 Identities=18% Similarity=0.181 Sum_probs=67.1
Q ss_pred HhhhCCChhhHHHH-HHHHhhhhhhhhcchhhhccc----hh-HHHHHHHHHHHHHHHHHHHHHHhcCCC-Cch-HHHHH
Q 008514 43 KSSLNYNQKQIARL-GVAKDLGDSVGFLAGSLCEVL----PI-WGALLVGALQNFIGYGWVWLIVTGRAP-VLP-LWAMC 114 (563)
Q Consensus 43 k~~lg~sq~~l~~i-~~a~~vG~~~gi~~G~l~D~~----gp-~~~~~iG~~~~~~Gy~~~~l~~~g~i~-~~s-~~~l~ 114 (563)
-+.+|++.....++ .++..+=+..=++.|.+.||. |+ |+=++.|++-..+-+.++|..- ..+ ..+ .|.+.
T Consensus 40 Tdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p--~~~~~~k~~ya~v 117 (467)
T COG2211 40 TDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITP--DFSMTGKLIYALV 117 (467)
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCC--CcccCcchHHHHH
Confidence 35678998888885 666666556677889999976 44 6667888887777777766442 111 112 33333
Q ss_pred HHHHHhccCcc---hhhhhHHHHHHHhcCCCCCcchhhhHhhhhhhHHHH
Q 008514 115 ILIFVGNNGET---YFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAIL 161 (563)
Q Consensus 115 ~~~~l~g~g~~---~~~ta~l~t~~k~FP~~RG~~~Gl~~a~~GLSa~i~ 161 (563)
.|.++. .+-+ .-|+ ++.+.+-+=|++|-...+.--.+-.++..+.
T Consensus 118 tY~l~~-l~YT~vniPy~-al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~ 165 (467)
T COG2211 118 TYMLLG-LGYTLVNIPYG-ALGPEITQDPQERASLTSWRMVFASLGGLLV 165 (467)
T ss_pred HHHHHH-HHHHheeCchh-hcchhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 343332 2222 2233 3444444448888887777655545544444
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0045 Score=66.89 Aligned_cols=137 Identities=17% Similarity=0.241 Sum_probs=78.6
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHh----hcCc-h---hHHHHHHHHHhhhhhhcch
Q 008514 401 SMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG----MGWP-G---AMYVGTLLIGLGYGAHWAI 472 (563)
Q Consensus 401 sl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~----~~~~-~---~l~~~~~l~Gl~~G~~~~l 472 (563)
..-.++|.+|+++.||+.||++||+.+-.. ..++.++..+.. ...+ . +|..==.++|++-|+.+.+
T Consensus 91 ~~A~vGti~GQl~FG~lgD~~GRK~vYG~~------liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPl 164 (538)
T KOG0252|consen 91 AAALVGTIFGQLFFGWLGDKFGRKKVYGKE------LIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPL 164 (538)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchhhhhHH------HHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcc
Confidence 356678999999999999999998765322 222223322222 2223 2 2333346789999999999
Q ss_pred hHHHHHHhhccCcchhhhhhhhh--------chhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHH-HHH
Q 008514 473 VPAAASELFGLKKFGALYNFLTL--------ANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM-ILV 543 (563)
Q Consensus 473 ~p~i~se~FG~k~fg~nyg~~~~--------a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l-~l~ 543 (563)
-..++||+=-.|.=|+.-+.++. +.+++-++...-+ +.|.+.+||...=.++=...-+|++..+ ++.
T Consensus 165 SAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe----~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly 240 (538)
T KOG0252|consen 165 SATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFE----KIFNGPSTYPHLDGVWRIIFGLGAVPALLVLY 240 (538)
T ss_pred hHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHh----ccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998666665555544432 2223222222111 2334446666655555444444443333 455
Q ss_pred hhhh
Q 008514 544 HRTT 547 (563)
Q Consensus 544 ~R~r 547 (563)
+|-+
T Consensus 241 ~Rl~ 244 (538)
T KOG0252|consen 241 FRLK 244 (538)
T ss_pred hhhc
Confidence 5543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0042 Score=67.75 Aligned_cols=137 Identities=17% Similarity=0.156 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhhccchheeeechHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHH
Q 008514 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF 438 (563)
Q Consensus 361 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~ 438 (563)
..|+.++++++.....-.....-..++-++++.++.+. ..+.+.++..++-+..|.+.||++||+. +.....
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~------l~~g~~ 99 (438)
T PRK10133 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG------IITGLF 99 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HHHHHH
Confidence 35677776665544444444444555666788887654 7789999999999999999999988543 234444
Q ss_pred HHHHHHHHH---hh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchh-hhhh----hhhchhhhhhhc
Q 008514 439 VMAIGHIFL---GM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGA-LYNF----LTLANPAGSIFT 504 (563)
Q Consensus 439 ~~~~~~lll---~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~-nyg~----~~~a~~vg~~l~ 504 (563)
+.+++.+++ .. .....+.++-.+.|++.|........+++|. +.++-+. .-++ ..++..+|+.+.
T Consensus 100 ~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~-~~~~~~~~~~s~~~~~~~~G~~~g~~~g 173 (438)
T PRK10133 100 LYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL-GPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-CChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555443 22 2334566788888999999999999998886 4444443 2222 235555555543
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.012 Score=63.29 Aligned_cols=140 Identities=15% Similarity=0.225 Sum_probs=75.2
Q ss_pred hhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhh
Q 008514 50 QKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFN 128 (563)
Q Consensus 50 q~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ 128 (563)
..+...+.....++..+ .++.|.+.||+|+|.+..+|.++..+++..+++. . .+.+.+....++.|.+.+..+
T Consensus 256 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~g~~~~~~~ 329 (437)
T TIGR00792 256 PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA--G----SNLPLILVLIILAGFGQNFVT 329 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc--c----hhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455544 6678999999999999999988888887765432 1 133444444455555555443
Q ss_pred hhHHHHHHHh-----c---CCCCCcchhhhHhhh----hhhHHHHHHHHHHh-cCCCh-------hHHHHHHHHHHHHHH
Q 008514 129 TAALVSCVQN-----F---PKSRGPVVGILKGFA----GLGGAILTQVYTMI-HAPDH-------ANLIFMVAVGPAMVV 188 (563)
Q Consensus 129 ta~l~t~~k~-----F---P~~RG~~~Gl~~a~~----GLSa~i~s~i~~~~-f~~~~-------~~fll~la~~~~~v~ 188 (563)
........+. + ++++|.+.|+.-... ++++.+...+.+.. |.++. .++...+.++|.+..
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~~~~~~~~~~~~~~~~~p~i~~ 409 (437)
T TIGR00792 330 GLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAAQSPITLNGIKILMFAVPALFL 409 (437)
T ss_pred HHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 3222221111 1 345788888764444 44444444444321 21111 234445555666555
Q ss_pred Hhhheee
Q 008514 189 IALMFII 195 (563)
Q Consensus 189 l~~~~~v 195 (563)
+++..+.
T Consensus 410 ~~~~~~~ 416 (437)
T TIGR00792 410 LLAAIII 416 (437)
T ss_pred HHHHHHH
Confidence 5555444
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.033 Score=60.20 Aligned_cols=151 Identities=22% Similarity=0.232 Sum_probs=99.3
Q ss_pred ccchHH-HHHHHHHHHHhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHHHHHHH
Q 008514 12 FNNRWL-VFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQ 89 (563)
Q Consensus 12 ~~~Rw~-~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~iG~~~ 89 (563)
..+|.+ -++++.+++...+..|.|. +..+++.-|++.+....+-..+.+.+. +....+++..|+|++.+++++.+.
T Consensus 205 k~~~~~~Fll~~~l~~~~~~~~~~f~--~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~ 282 (400)
T PF03825_consen 205 KNPRFLVFLLAAFLIGISHAAYYTFF--SIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVA 282 (400)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 344554 5567777788888888886 444776665766665554333334443 467889999999999999999885
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHH---H-HHHhccCcchhhhhHHHHHHHhcCCC-CCcchhhhHh-hhhhhHHHHHH
Q 008514 90 NFIGYGWVWLIVTGRAPVLPLWAMCI---L-IFVGNNGETYFNTAALVSCVQNFPKS-RGPVVGILKG-FAGLGGAILTQ 163 (563)
Q Consensus 90 ~~~Gy~~~~l~~~g~i~~~s~~~l~~---~-~~l~g~g~~~~~ta~l~t~~k~FP~~-RG~~~Gl~~a-~~GLSa~i~s~ 163 (563)
|..=|..+.-..+ +.|.... . ..+=|..-+.++.+++.-..++.|++ |+++.|+..+ .+|+|+.+-+.
T Consensus 283 ----~~vR~~l~a~~~~--~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~ 356 (400)
T PF03825_consen 283 ----YAVRWLLYAYFSD--PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSL 356 (400)
T ss_pred ----HHHHHHHHHHhcC--CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHH
Confidence 4444433332211 2222221 1 12335555667889999999999965 8999999766 57999988777
Q ss_pred HHHHhcC
Q 008514 164 VYTMIHA 170 (563)
Q Consensus 164 i~~~~f~ 170 (563)
+.-..++
T Consensus 357 igG~l~~ 363 (400)
T PF03825_consen 357 IGGWLYD 363 (400)
T ss_pred HHHHHHH
Confidence 7665553
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.4 Score=52.35 Aligned_cols=107 Identities=22% Similarity=0.302 Sum_probs=76.3
Q ss_pred ccHHHHhhhCCChhhHHHHHHHHhhhhhhhhcchhhhccch-----hHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHH
Q 008514 38 ISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLP-----IWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWA 112 (563)
Q Consensus 38 ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~gi~~G~l~D~~g-----p~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~ 112 (563)
-.+-+|+++|+|.+|++.+.....+.-.+-++.|++.|.+| +|+=+++|+++..++...+. ...+.. .+...
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~-~~~~~~--~s~~~ 88 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLA-LLPASE--SSAAI 88 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHH-hccccc--chhhh
Confidence 35679999999999999998888888888999999999997 57778889888765555432 222322 23344
Q ss_pred HHHHHHHhccCcchhhhh---HHHHHHHhcCCCCCcch
Q 008514 113 MCILIFVGNNGETYFNTA---ALVSCVQNFPKSRGPVV 147 (563)
Q Consensus 113 l~~~~~l~g~g~~~~~ta---~l~t~~k~FP~~RG~~~ 147 (563)
..++.++...|..+.|.+ -++-.+|.-|..||...
T Consensus 89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lq 126 (433)
T PF03092_consen 89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQ 126 (433)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHH
Confidence 445566666777776664 45666777887766544
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.02 Score=59.56 Aligned_cols=118 Identities=16% Similarity=0.108 Sum_probs=79.4
Q ss_pred cHHHHh--hhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 008514 39 SPVIKS--SLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCI 115 (563)
Q Consensus 39 s~~Lk~--~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~ 115 (563)
..-+++ .+|++.++........-.+... .+.++.+.||+|++..+.++.+...++..+.+.. . . .+.+..
T Consensus 164 ~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~--~---~--~~~~~~ 236 (310)
T TIGR01272 164 VNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT--H---G--YVAMWF 236 (310)
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc--C---C--HHHHHH
Confidence 344554 3799988888864333334433 6678999999999888888887777776543321 1 1 122222
Q ss_pred HHHHhccCcchhhhhHHHHHHHhcCCCCCcchhhhHhhhhhhHHHHHHHH
Q 008514 116 LIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVY 165 (563)
Q Consensus 116 ~~~l~g~g~~~~~ta~l~t~~k~FP~~RG~~~Gl~~a~~GLSa~i~s~i~ 165 (563)
+ .+.|.+.+..+........+.+|++.|.++++. .+-.+++++...+.
T Consensus 237 ~-~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~ 284 (310)
T TIGR01272 237 V-LALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQ 284 (310)
T ss_pred H-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHH
Confidence 2 244577788888889999999999989999986 44557777766544
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.022 Score=60.00 Aligned_cols=167 Identities=16% Similarity=0.196 Sum_probs=101.1
Q ss_pred HHHHHHHHhhccchheeeechHHHHHH----hCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHH
Q 008514 364 WLIFFSLLLGSGSGLTVIDNLGQMSQS----LGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 437 (563)
Q Consensus 364 wll~~~~~~~~g~gl~~i~n~~~i~~~----~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~ 437 (563)
|++.....+...--=..+..++|+..+ .|.+.+.+ ..++=-++-...-+ +.-++.||.+..|.. +...
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap----~a~~Lar~~g~er~l--~~~L 84 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAP----AAPRLARRFGEERSL--FLAL 84 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHhhHHHH--HHHH
Confidence 666666655555444456666666654 46665432 22221111222222 233555555556644 3445
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhccCCC-CCCCCccc
Q 008514 438 FVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMPR-VDEPLKCE 516 (563)
Q Consensus 438 ~~~~~~~lll~~~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~~~~-~~~~~~C~ 516 (563)
++.++|.++=.......++.++.++|.+.+....+.|.++.|.|+ |+-+..=|+-.++-.+|+-+.+... +-.+ +
T Consensus 85 lli~~G~~iR~~~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~---~ 160 (395)
T COG2807 85 LLIAAGILIRSLGGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQ---H 160 (395)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHH---h
Confidence 555666654333444578899999999999999999999999999 8888777776655555554444221 1001 1
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHH
Q 008514 517 GSICYFLTSMIMSGLCIVAVILSMI 541 (563)
Q Consensus 517 G~~cy~~~f~i~~~~~~~~~~l~l~ 541 (563)
. +.++.++...+..+++++++=+.
T Consensus 161 ~-~gW~~aL~~WAl~allAl~~WlP 184 (395)
T COG2807 161 S-GGWRGALGFWALLALLALLIWLP 184 (395)
T ss_pred h-ccHHHHHHHHHHHHHHHHHHHhh
Confidence 1 45899999999988877554333
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.016 Score=62.99 Aligned_cols=113 Identities=16% Similarity=0.110 Sum_probs=66.4
Q ss_pred HHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 008514 42 IKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVG 120 (563)
Q Consensus 42 Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~ 120 (563)
+++.+|.+..+...+.+...++.. ..++.+++.||+|+|.++.+|.++..+|+.++++ . +..++|.+....++.
T Consensus 255 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~--~---~~~~~~~~~~~~~l~ 329 (448)
T PRK09848 255 VRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW--V---SVWSLPVALVALAIA 329 (448)
T ss_pred EeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH--c---CchhHHHHHHHHHHH
Confidence 355677766544444444344443 3667899999999999999999888888876652 1 222456554445556
Q ss_pred ccCcchhhhhHHHHHHHhcCC--------CCCcchhhhHhhhhhhHH
Q 008514 121 NNGETYFNTAALVSCVQNFPK--------SRGPVVGILKGFAGLGGA 159 (563)
Q Consensus 121 g~g~~~~~ta~l~t~~k~FP~--------~RG~~~Gl~~a~~GLSa~ 159 (563)
|.|.+...+.......+.=|. ++|...|+.--..-++.+
T Consensus 330 g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~a 376 (448)
T PRK09848 330 SIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQA 376 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHH
Confidence 666666554433333333331 246666664443333333
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0084 Score=66.55 Aligned_cols=124 Identities=13% Similarity=0.001 Sum_probs=86.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHhhhhhhcchhHHHH
Q 008514 399 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAA 477 (563)
Q Consensus 399 ~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~-~~~l~~~~~l~Gl~~G~~~~l~p~i~ 477 (563)
..+++-++..+|-+++|.++|++|||. .+....++..++.+..+... ...+.+.=.+.|++.++.+.+...++
T Consensus 123 ~~s~~~~G~~vG~~i~g~lsD~~GRk~------~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~ 196 (521)
T KOG0255|consen 123 GQSLFFLGVLVGSLIFGPLSDRFGRKP------VLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLV 196 (521)
T ss_pred HHHHHHHHHHHHHhhheehHhhcccHH------HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhh
Confidence 678899999999999999999998843 22444444555544444433 45677788999999999999999999
Q ss_pred HHhhccCcchhhhhh---hhhchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHH
Q 008514 478 SELFGLKKFGALYNF---LTLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVIL 538 (563)
Q Consensus 478 se~FG~k~fg~nyg~---~~~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l 538 (563)
+|+++.|+=+..=.+ .+.++.+++...+... +.+|..+++.....++.+++
T Consensus 197 ~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~----------~~Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 197 AEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYIT----------RDWRWLFWIISIPSGLFLLL 250 (521)
T ss_pred eeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHH
Confidence 999999985544443 1222222222222221 24888888888877776665
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.017 Score=61.83 Aligned_cols=132 Identities=18% Similarity=0.196 Sum_probs=80.3
Q ss_pred ccccccH-HHHhhhCCChhhHHHH-HHHHhhhhhhhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH
Q 008514 34 LFGSISP-VIKSSLNYNQKQIARL-GVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLW 111 (563)
Q Consensus 34 ~fS~ys~-~Lk~~lg~sq~~l~~i-~~a~~vG~~~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~ 111 (563)
.||.|=+ -++++|+.+..+-..+ ..+..+|...=+.+|.+.||+|++-+.++--+...++-....+..++.-..++.+
T Consensus 236 gfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~ 315 (417)
T COG2223 236 GFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFV 315 (417)
T ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchH
Confidence 3444333 3788999999988776 5555666666788999999998754444333333333333222222221011211
Q ss_pred -HH--H-HHHHHhccCcchhhhhHHHHHHHhcCCCCCcchhhhHhhhhhhHHHHHHHHHHhc
Q 008514 112 -AM--C-ILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIH 169 (563)
Q Consensus 112 -~l--~-~~~~l~g~g~~~~~ta~l~t~~k~FP~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f 169 (563)
.. + ...+..|.|++ ++-.-.-.-||++-|.++|++-+.-|+++++..+..-..+
T Consensus 316 ~~~~~~l~l~~~~G~GnG----svfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~ 373 (417)
T COG2223 316 VFVAVFLALFVFAGLGNG----SVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSL 373 (417)
T ss_pred HHHHHHHHHHHHhccCcc----hheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHH
Confidence 11 1 12233334333 4455566778899999999999999999988877765554
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.023 Score=61.42 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=46.6
Q ss_pred hhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcC
Q 008514 358 LIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYA 426 (563)
Q Consensus 358 l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~ 426 (563)
.|+++||.+-..+++--.+=-....-.....++ .|++.+++ ..|..++...+..++.|.++||++.|++
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~ 75 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKH 75 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHH
Confidence 367888866555444433333344455667765 89998765 8888999999999999999999987554
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.042 Score=63.14 Aligned_cols=149 Identities=23% Similarity=0.374 Sum_probs=96.8
Q ss_pred HhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhcC-c--------hhHHHH
Q 008514 390 SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW-P--------GAMYVG 458 (563)
Q Consensus 390 ~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~-~--------~~l~~~ 458 (563)
.+|.+... ..+..+.-...+-.++.|++.|+.-.+++ .+.+..++..+|+.++.... + ..++++
T Consensus 17 ~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~-----tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~g 91 (654)
T TIGR00926 17 FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFK-----TILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLG 91 (654)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHH
Confidence 35666543 36667777788888999999997644332 23444555666766654321 1 236678
Q ss_pred HHHHHhhhhhhcchhHHHHHHhhccCc---chhhhhhhhhchhhhhhhccCC-C-CCCCCcccc-CcccHHHHHHHHHHH
Q 008514 459 TLLIGLGYGAHWAIVPAAASELFGLKK---FGALYNFLTLANPAGSIFTSMP-R-VDEPLKCEG-SICYFLTSMIMSGLC 532 (563)
Q Consensus 459 ~~l~Gl~~G~~~~l~p~i~se~FG~k~---fg~nyg~~~~a~~vg~~l~~~~-~-~~~~~~C~G-~~cy~~~f~i~~~~~ 532 (563)
.+++.++.|+.=+-+.+...|.|..++ +-.-|.+.+.+.-+|+++.... . ......|.| ..||..+|.+.+++.
T Consensus 92 LaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m 171 (654)
T TIGR00926 92 LALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILM 171 (654)
T ss_pred HHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHH
Confidence 899999999999999999999998543 5555666665555555443311 0 111123444 358999999999888
Q ss_pred HHHHHHHHHHH
Q 008514 533 IVAVILSMILV 543 (563)
Q Consensus 533 ~~~~~l~l~l~ 543 (563)
++++++.+.-.
T Consensus 172 ~ia~lvf~~g~ 182 (654)
T TIGR00926 172 ILALIVFMAGS 182 (654)
T ss_pred HHHHHHHHHhc
Confidence 88876655433
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.13 Score=56.83 Aligned_cols=150 Identities=14% Similarity=0.146 Sum_probs=90.9
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhH--HHH
Q 008514 7 RFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIW--GAL 83 (563)
Q Consensus 7 ~~~~~~~~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~--~~~ 83 (563)
.+|+..+.|-+.....-+....-|.+-..+...--.++.+|++++|+..+.+..++.+.. .++.|++.||+||| .++
T Consensus 273 t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l 352 (477)
T PF11700_consen 273 TFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTL 352 (477)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 345555555443333333333344444444444456678999999999988888877766 66799999999999 554
Q ss_pred HHHHHHH----HHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCCCCCcchhhhHhhhhhhHH
Q 008514 84 LVGALQN----FIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGA 159 (563)
Q Consensus 84 ~iG~~~~----~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~~RG~~~Gl~~a~~GLSa~ 159 (563)
.+..+.. ..|+.+++-. .+...+-|.+.++.++.|...|..++++=..-.|-=|+.|= +---+.|++++-
T Consensus 353 ~~~l~~~~~i~~~g~~G~~~~---~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e---~efFgly~i~gk 426 (477)
T PF11700_consen 353 LISLILWIIIPLYGLFGFWPS---FFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGRE---AEFFGLYAITGK 426 (477)
T ss_pred HHHHHHHHHHHHHHHHHhhhc---ccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchh---hHHHHHHHHHHH
Confidence 4444322 2233322222 21123467777888888888888888887777788886542 334444444444
Q ss_pred HHH
Q 008514 160 ILT 162 (563)
Q Consensus 160 i~s 162 (563)
.-+
T Consensus 427 ~ss 429 (477)
T PF11700_consen 427 ASS 429 (477)
T ss_pred HHH
Confidence 333
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.052 Score=58.38 Aligned_cols=144 Identities=16% Similarity=0.157 Sum_probs=98.0
Q ss_pred hHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhcCc-hhHHHHHH
Q 008514 384 LGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWP-GAMYVGTL 460 (563)
Q Consensus 384 ~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~~-~~l~~~~~ 460 (563)
...|.++.|++.++. .-|.+++.=.++..++|.+|||...|+-. .+.+++.++..+++...+. ..+.+.-.
T Consensus 52 ~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm------~~gLilsai~nil~Gfs~s~~~~~~l~~ 125 (448)
T COG2271 52 MPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFM------AFGLILSAIVNILFGFSPSLFLFAVLWV 125 (448)
T ss_pred cHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceee------hHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 445677778887764 78999999999999999999988664433 4444555555555544442 23444555
Q ss_pred HHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhcc----CCCCCCCCccccCcccHHHHHHHHHHHHHHH
Q 008514 461 LIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTS----MPRVDEPLKCEGSICYFLTSMIMSGLCIVAV 536 (563)
Q Consensus 461 l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~----~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~ 536 (563)
+=|+--|.-|+-.--++..+|..|.=|+-|++-.++.-+|+-+.+ ... +......|.+|++-++++++-.
T Consensus 126 lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~------~~~~~~w~~~f~~pgiiaiiva 199 (448)
T COG2271 126 LNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAF------FAFHGGWRAAFYFPGIIAIIVA 199 (448)
T ss_pred HHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHH------HHhccchhHHHHHHHHHHHHHH
Confidence 668889999999999999999999999999987654433333222 111 0011258999999887665443
Q ss_pred HHH
Q 008514 537 ILS 539 (563)
Q Consensus 537 ~l~ 539 (563)
+..
T Consensus 200 l~~ 202 (448)
T COG2271 200 LIL 202 (448)
T ss_pred HHH
Confidence 333
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.028 Score=61.88 Aligned_cols=134 Identities=12% Similarity=-0.025 Sum_probs=92.1
Q ss_pred HhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 008514 27 SCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGR- 104 (563)
Q Consensus 27 l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~- 104 (563)
...+..+.+-.|.+ +.+|+|..++.++.....++... ....+++.+|++.|.++.++.++..+++.......+..
T Consensus 267 ~~~~~~~~~f~~~~---~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~ 343 (468)
T TIGR00788 267 NLPGASGSVFCATT---QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWN 343 (468)
T ss_pred hcCCCCceeEEEEc---ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccc
Confidence 34444444433444 35999999999974444466544 56788888999999999999998877775432221111
Q ss_pred ----CCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHH
Q 008514 105 ----APVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVY 165 (563)
Q Consensus 105 ----i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~ 165 (563)
++ ..|.+....++.+.+.++.+++.+...++.-|+ ++|+..|+..+...++..+-+.+.
T Consensus 344 ~~~gi~--~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~g 407 (468)
T TIGR00788 344 LAFGIS--DEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLG 407 (468)
T ss_pred cccCCC--CeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHH
Confidence 12 223333345566667777788889999999985 589999999999999987777533
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.099 Score=58.56 Aligned_cols=140 Identities=16% Similarity=0.172 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHH
Q 008514 18 VFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGW 96 (563)
Q Consensus 18 ~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~ 96 (563)
.++.+.+..+..+..+ .+.---.|+.+|.+..+..++-.+..+|+.. ++..+++.++.++...+..+.+...++...
T Consensus 223 ~l~~~~~~~l~~~a~~--aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~ 300 (524)
T PF05977_consen 223 VLLRSFLFNLFASAVW--ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLL 300 (524)
T ss_pred HHHHHHHHHHhhhHHH--HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHH
Confidence 3444445555555443 3332234678999999999988888888866 667788888888776666666654444433
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCCC-CCcchhhhH----hhhhhhHHHHHHHHH
Q 008514 97 VWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKS-RGPVVGILK----GFAGLGGAILTQVYT 166 (563)
Q Consensus 97 ~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~~-RG~~~Gl~~----a~~GLSa~i~s~i~~ 166 (563)
+ +.. ++.|..+...++.|.+....++...+...++=|++ ||.+.++-. +...+|+.+...+.+
T Consensus 301 l-----al~--~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 301 L-----ALS--PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred H-----hcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 322 35677666667777777776666555666777975 999998853 334456666666554
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.019 Score=63.77 Aligned_cols=138 Identities=13% Similarity=0.158 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHhhhhhhcchhHHHH
Q 008514 398 IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAA 477 (563)
Q Consensus 398 ~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~~~~l~~~~~l~Gl~~G~~~~l~p~i~ 477 (563)
...+++.++-.+|.+.+|++.||+.- +| ........-.+++.+-........+...=.+.|+.-++.|.-..+++
T Consensus 85 ~~~t~F~v~Yii~~~p~~~L~~r~~l----s~-~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~l 159 (495)
T KOG2533|consen 85 VLDTVFYVGYIIGQFPSGLLGDRFPL----SK-GLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAIL 159 (495)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHhCCh----HH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHH
Confidence 37899999999999999999998842 11 11111111112221111233344566667888999999999999999
Q ss_pred HHhhccCcchhhhhhhhhchhhhhhhcc----CCC-CCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008514 478 SELFGLKKFGALYNFLTLANPAGSIFTS----MPR-VDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 543 (563)
Q Consensus 478 se~FG~k~fg~nyg~~~~a~~vg~~l~~----~~~-~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~ 543 (563)
+.+|+.++.|...|+.+.+..+|+.+.+ ... .++. .+..+||..|+|.++++++..++.++..
T Consensus 160 g~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~---~~~~gW~~~FiI~G~i~~~~gi~~f~~l 227 (495)
T KOG2533|consen 160 GNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGS---GGLAGWRWLFIIEGVITLVLGIVVFFFL 227 (495)
T ss_pred HhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC---CCcCCceeehhHHHHHHHHHHheEEEEe
Confidence 9999999999999999965555555554 211 1111 3456899999999988877666655433
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.1 Score=56.27 Aligned_cols=183 Identities=16% Similarity=0.255 Sum_probs=100.2
Q ss_pred hhhhhhccch-HHHHHHHHHH-HHhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHH
Q 008514 6 ERFVSFFNNR-WLVFVAAMWI-QSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGA 82 (563)
Q Consensus 6 ~~~~~~~~~R-w~~l~a~~~i-~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~ 82 (563)
+..|+..+|| |..+....++ +++.+..-.+..| -.+..+|.+ .+.+.+.....++..+ .++.+.+.||+|+|.+
T Consensus 216 ~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y--~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~ 292 (428)
T PF13347_consen 216 DSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPY--YFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKV 292 (428)
T ss_pred cchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHH--HHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceee
Confidence 3445555555 5544444444 4444443433333 344445555 3445555555555544 6778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHH--------hcCCCCCcchhh----h
Q 008514 83 LLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQ--------NFPKSRGPVVGI----L 150 (563)
Q Consensus 83 ~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k--------~FP~~RG~~~Gl----~ 150 (563)
..+|.+...+++.+++..-. .+.|.+....++.|.|.+..++.....-.. +-.++.|...|+ .
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~ 367 (428)
T PF13347_consen 293 YIIGLLLAALGFLLLFFLGP-----GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFI 367 (428)
T ss_pred hhhhHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhh
Confidence 99999999898888776643 245666666666666666544322211111 111223555444 4
Q ss_pred HhhhhhhHHHHHHHHHHh-cCCC--------hhHHHHHHHHHHHHHHHhhheeec
Q 008514 151 KGFAGLGGAILTQVYTMI-HAPD--------HANLIFMVAVGPAMVVIALMFIIR 196 (563)
Q Consensus 151 ~a~~GLSa~i~s~i~~~~-f~~~--------~~~fll~la~~~~~v~l~~~~~vr 196 (563)
|-..|+++.+...+-+.. |.++ ...+-....++|.+..+++..+.+
T Consensus 368 k~~~~la~~i~g~~l~~~Gy~~~~~~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~ 422 (428)
T PF13347_consen 368 KIGQGLAGAIVGLLLALVGYDANAAVQSASALSGIRILFSIVPAIFLLLAIIFMR 422 (428)
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666666655444321 1221 123444445555555555554444
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.094 Score=57.62 Aligned_cols=76 Identities=14% Similarity=0.027 Sum_probs=42.9
Q ss_pred hhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhh
Q 008514 51 KQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFN 128 (563)
Q Consensus 51 ~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ 128 (563)
++...+.....++.. ..++.+.+.||+|+|.++.++.++..++...++.. +..+..+.|.+.+..++.|.+.+..+
T Consensus 266 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~l~g~~~~~~~ 342 (473)
T PRK10429 266 DLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLM--GLAAPHNALLIVIAGILLNIGTALFW 342 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH--hccCchhHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333 35678999999999999888887766666554332 11222234554444455555555443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.047 Score=60.69 Aligned_cols=149 Identities=17% Similarity=0.189 Sum_probs=96.0
Q ss_pred heeeechHHHHHHhC---CC--ch-----hHHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHH
Q 008514 378 LTVIDNLGQMSQSLG---YD--NT-----HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFL 447 (563)
Q Consensus 378 l~~i~n~~~i~~~~g---~~--~~-----~~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll 447 (563)
..+..++....++.. .. .. ...++.+.+++.+|.+.+|.++|+++||+.. .+...+..++.++.
T Consensus 63 ~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l------~~~~~~~~iG~ii~ 136 (513)
T KOG0254|consen 63 IGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTL------LLAVVLFLIGAIII 136 (513)
T ss_pred cccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHHHHHHHH
Confidence 455566666555531 11 11 3589999999999999999999999996543 44455555665555
Q ss_pred hhc-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhh---hhccCCCCCCCCccccCcccHH
Q 008514 448 GMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGS---IFTSMPRVDEPLKCEGSICYFL 523 (563)
Q Consensus 448 ~~~-~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~---~l~~~~~~~~~~~C~G~~cy~~ 523 (563)
+.. +...+..+-++.|++.|....+.|..++|.=..+.=|..=....+...+|- ++.+..... . . .-||.
T Consensus 137 ~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~---~-~--~~Wr~ 210 (513)
T KOG0254|consen 137 ALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK---V-Y--AGWRI 210 (513)
T ss_pred HHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc---C-C--ccHHH
Confidence 443 445788899999999999999999999999876554443333333333332 222222110 0 1 24787
Q ss_pred HHHHHHHHHHHHHHH
Q 008514 524 TSMIMSGLCIVAVIL 538 (563)
Q Consensus 524 ~f~i~~~~~~~~~~l 538 (563)
.+.+....+++-.+.
T Consensus 211 ~~~~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 211 PLGLALIPAVILALG 225 (513)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777766666555544
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.055 Score=57.79 Aligned_cols=136 Identities=17% Similarity=0.201 Sum_probs=105.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHhhhhhhcchhHHHH
Q 008514 399 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAA 477 (563)
Q Consensus 399 ~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~-~~~l~~~~~l~Gl~~G~~~~l~p~i~ 477 (563)
..+..++.+.+--.+.|.+.||+++ ++| +++-..++..+..+++++. ...+.++=+|=|++.-..+..--+++
T Consensus 111 LFaskA~~qllvnp~~G~l~~~iGy--~ip----m~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglaml 184 (464)
T KOG3764|consen 111 LFASKALVQLLVNPFFGNLIDRIGY--KIP----MVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAML 184 (464)
T ss_pred HHHHHHHHHHHhcccchhhHHHhcc--ccH----HHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHH
Confidence 6677888888899999999999977 444 3455556666777788765 45788899999999999999999999
Q ss_pred HHhhccCc-----chhhhhhhhhchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008514 478 SELFGLKK-----FGALYNFLTLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 548 (563)
Q Consensus 478 se~FG~k~-----fg~nyg~~~~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r~ 548 (563)
+|.|.-+| .|...|++.++-.+||.+.+.-+. ...|+..|+|.++++++..++-+.+...+|.
T Consensus 185 Ad~f~~d~er~~vmGialgfislG~lvgPpfGGilYe--------~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 185 ADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYE--------FAGKSAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred HHHcccchhhhHHHHHHHHHHhccceecCCcccchHh--------hcCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 99999777 456666666666666666554441 2348999999999999999999988877664
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.52 E-value=1.3 Score=47.38 Aligned_cols=119 Identities=18% Similarity=0.112 Sum_probs=73.7
Q ss_pred cCccccccccc-HHHHhhhCCChhhHHHHHHHHhhhhhh-------hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHH
Q 008514 29 AGIGYLFGSIS-PVIKSSLNYNQKQIARLGVAKDLGDSV-------GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLI 100 (563)
Q Consensus 29 ~Gt~Y~fS~ys-~~Lk~~lg~sq~~l~~i~~a~~vG~~~-------gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~ 100 (563)
.+..|.|.++- ..+....+-++.++. -.++.+|..| .+..|.+.|++|+|++++++.....+-|. +|..
T Consensus 41 ~~~L~~~~~~~V~~F~~a~~~~~~~~~--~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~l-l~~~ 117 (451)
T KOG2615|consen 41 VSSLYPFVVFMVRDFNIAIGEPDGASV--FYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYL-LWAL 117 (451)
T ss_pred ccchhHHHHHhhHHHHHhhCCcccccc--hhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHH-HHHH
Confidence 48888887763 233444555554233 3444455544 45699999999999999999998888554 4443
Q ss_pred HhcCCCCchHHHHHHHHHHhccCcchhhhhHHH-HHHHhcC-CCCCcchhhhHhhhhhhH
Q 008514 101 VTGRAPVLPLWAMCILIFVGNNGETYFNTAALV-SCVQNFP-KSRGPVVGILKGFAGLGG 158 (563)
Q Consensus 101 ~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~-t~~k~FP-~~RG~~~Gl~~a~~GLSa 158 (563)
-. ++..+.+-=+++|...|- ..... -...-++ ++|+++.+.+-..+|+|-
T Consensus 118 S~------~F~afv~aR~l~Gi~kgn--l~v~rAiisdV~sek~r~l~ms~v~~a~~lGf 169 (451)
T KOG2615|consen 118 SR------NFAAFVLARFLGGIFKGN--LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGF 169 (451)
T ss_pred HH------HHHHHHHHHHhhhhccCc--hHHHHHHHHhhcChhhccceeeeeehhhhcch
Confidence 21 231222224566665552 22222 2334454 679999999999999984
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.14 Score=55.06 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=82.1
Q ss_pred HHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 008514 42 IKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVG 120 (563)
Q Consensus 42 Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~ 120 (563)
-++.+||++.|+-.++...++.+.+ ++++|++-||+|+|.++.+|.+...+-... +.... . ...+|. ++++.
T Consensus 279 g~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~--~~~~~-~-~~~f~i---~gll~ 351 (438)
T COG2270 279 GAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALY--LIFLE-G-ELDFWI---LGLLV 351 (438)
T ss_pred HHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHH--HHHcc-c-cHHHHH---HHHHH
Confidence 3558999999999998888888865 889999999999999988888876544432 22222 2 223444 55566
Q ss_pred ccCcchhhhhHHHHHHHhcCCCC-CcchhhhHhhhhhhHHHHHHHHHHhc
Q 008514 121 NNGETYFNTAALVSCVQNFPKSR-GPVVGILKGFAGLGGAILTQVYTMIH 169 (563)
Q Consensus 121 g~g~~~~~ta~l~t~~k~FP~~R-G~~~Gl~~a~~GLSa~i~s~i~~~~f 169 (563)
|...|-....+=.--.|+.|+.| |.--|+- +.+|=.++++.+.--+++
T Consensus 352 g~s~G~~qA~SRSy~~~lvp~~k~~~fFgly-altgra~S~~gp~lv~v~ 400 (438)
T COG2270 352 GTSLGGAQASSRSYLARLVPKGKEGRFFGLY-ALTGRAASFLGPFLVAVI 400 (438)
T ss_pred HHhcchHHHHHHHHHHHhCCCccccceeehh-hhhhhHHHHHHHHHHHHH
Confidence 66777777788888899998654 6555543 333444455555544444
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.0046 Score=69.35 Aligned_cols=75 Identities=17% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHH
Q 008514 21 AAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWV 97 (563)
Q Consensus 21 a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~ 97 (563)
...++| ..-..|.=++-+ ++++|++++.+|...|..+-|++..+ .++..++-+|..+...+.+|+++.++|+.++
T Consensus 10 ~~~~~q-~~~~g~~~~~lt-tiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~ 85 (539)
T PF03137_consen 10 LLGLFQ-MMVSGYVNSSLT-TIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLF 85 (539)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHH-HHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHH
Confidence 334445 444456656555 89999999999999999999999965 6667777766533223466777777777654
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.021 Score=61.96 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=91.4
Q ss_pred chHHHHHHHHHHHHhcCc-ccccccccHHHHhhhCCChhhHHHHHHHHhh-hhhhhhcchhhhccchhHHHHHHHHHHHH
Q 008514 14 NRWLVFVAAMWIQSCAGI-GYLFGSISPVIKSSLNYNQKQIARLGVAKDL-GDSVGFLAGSLCEVLPIWGALLVGALQNF 91 (563)
Q Consensus 14 ~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~v-G~~~gi~~G~l~D~~gp~~~~~iG~~~~~ 91 (563)
..|+.++.-.++++..=. -|+=.-=-+.+++.+|++.++.-++++...+ -+..+++.|.+.|||-++.++.+|...-.
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~ 109 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWT 109 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHH
Confidence 345555555555554311 1222223467888999999999998554444 45679999999999999888888877644
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhh
Q 008514 92 IGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGI 149 (563)
Q Consensus 92 ~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl 149 (563)
..-.. .+.+ ..+|++.++=.+.|.|-....+.+-.--..+|| ++|+++-|+
T Consensus 110 ~Av~~-----~~fs--~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~i 161 (493)
T KOG1330|consen 110 LAVFA-----SGFS--NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGI 161 (493)
T ss_pred HHHHH-----HHHH--HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHH
Confidence 44332 2322 258998888888889999988988889999999 579987655
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.068 Score=59.65 Aligned_cols=169 Identities=15% Similarity=0.188 Sum_probs=108.6
Q ss_pred HHHHHHHHhhccchheeeechH----HHHHHhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHH
Q 008514 364 WLIFFSLLLGSGSGLTVIDNLG----QMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 437 (563)
Q Consensus 364 wll~~~~~~~~g~gl~~i~n~~----~i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~ 437 (563)
|...++.++..+..-.+++..+ .+.++.+.+..+ ...|+..-...+.-++++.+.||++. |+.. .+-.
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~-----R~v~-i~G~ 118 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGC-----RTVM-IAGG 118 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCc-----hHHH-HHHH
Confidence 4444444444444445555554 344455655553 35666665666666778888888766 3232 4455
Q ss_pred HHHHHHHHHHhhcCc-hhHHH-HHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhccCCCCCCCCcc
Q 008514 438 FVMAIGHIFLGMGWP-GAMYV-GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMPRVDEPLKC 515 (563)
Q Consensus 438 ~~~~~~~lll~~~~~-~~l~~-~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~~~~~~~~~~C 515 (563)
++..+|+++..+... ..+++ -.++.|+++|..+.-...++..||- |+=+.-=|+...+.++|..+++..-+ .+
T Consensus 119 ~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~----~l 193 (509)
T KOG2504|consen 119 LVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLK----YL 193 (509)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHH----HH
Confidence 566667666554332 24444 6667799999999999999999998 77788788888999999999984310 00
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008514 516 EGSICYFLTSMIMSGLCIVAVILSMILV 543 (563)
Q Consensus 516 ~G~~cy~~~f~i~~~~~~~~~~l~l~l~ 543 (563)
...-.+|.++++..++++-.++..+.++
T Consensus 194 ~~~~G~r~~~l~~~~~~l~~~~~~~~~r 221 (509)
T KOG2504|consen 194 LSKYGWRGALLIFGGISLNVLVAGALLR 221 (509)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 1112379999999888855555555443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.37 Score=53.26 Aligned_cols=141 Identities=12% Similarity=0.081 Sum_probs=88.7
Q ss_pred HHhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhh-hhhhcchhhhccchhHHHHHHHHHHHHHHHHHHH--HHHh
Q 008514 26 QSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVW--LIVT 102 (563)
Q Consensus 26 ~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~-~~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~--l~~~ 102 (563)
|..+| .++=..||..+-++-|+++.+...+..+..+-. ...+.+.++.||+|+|+.++++...+.+-...+- +...
T Consensus 281 qq~sG-i~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~ 359 (485)
T KOG0569|consen 281 QQFSG-INAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLS 359 (485)
T ss_pred HHhcC-cceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444 445677899999999999998887765555555 4478899999999999999998887655544331 1222
Q ss_pred cCC-CCchHHHH-HHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHHh
Q 008514 103 GRA-PVLPLWAM-CILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMI 168 (563)
Q Consensus 103 g~i-~~~s~~~l-~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~ 168 (563)
+.. +..+|..+ +.+.++...+.|.. .-+.--...-|| ..|..+........=++.++....+.-.
T Consensus 360 ~~~~~~~~y~~i~~~~~~~~~f~~G~g-pi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l 427 (485)
T KOG0569|consen 360 NSFGSWLSYLCIAAIFLFIISFAIGPG-PIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPL 427 (485)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhhcCCC-chhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 11112112 23444444444432 233444567787 5699998888777777776665555433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.13 Score=55.94 Aligned_cols=147 Identities=13% Similarity=0.049 Sum_probs=79.6
Q ss_pred HhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhcC---c---hhHHHHHHH
Q 008514 390 SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW---P---GAMYVGTLL 461 (563)
Q Consensus 390 ~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~---~---~~l~~~~~l 461 (563)
.+|.++.. ...++..++..+.-++.|+++||...|++-.|+|.+...........+++.... . ..+++...+
T Consensus 39 ~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l 118 (444)
T PRK09669 39 VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYIL 118 (444)
T ss_pred hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHH
Confidence 46777664 377888899999999999999998777776788876543333222222333321 1 123334445
Q ss_pred HHhhhhhhcchhHHHHHHhhc-cCcchhhhh----hhhhchhhhhhhc----cCCCCCCCCccccCcccHHHHHHHHHHH
Q 008514 462 IGLGYGAHWAIVPAAASELFG-LKKFGALYN----FLTLANPAGSIFT----SMPRVDEPLKCEGSICYFLTSMIMSGLC 532 (563)
Q Consensus 462 ~Gl~~G~~~~l~p~i~se~FG-~k~fg~nyg----~~~~a~~vg~~l~----~~~~~~~~~~C~G~~cy~~~f~i~~~~~ 532 (563)
.+.+|....--+-++.+|+.- .++-++..+ ...++..+++.+. ... .+++ ....|+.++.+.+.++
T Consensus 119 ~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~-~~~~----~~~g~~~~~~i~~ii~ 193 (444)
T PRK09669 119 LSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDIL-GKGD----EQKGYFYAMMVMGLLG 193 (444)
T ss_pred HHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCc----hhhhHHHHHHHHHHHH
Confidence 566666655455556666552 122222222 2223333333221 111 1100 1235788887777776
Q ss_pred HHHHHHHHH
Q 008514 533 IVAVILSMI 541 (563)
Q Consensus 533 ~~~~~l~l~ 541 (563)
++..+++.+
T Consensus 194 ~v~~~~~~~ 202 (444)
T PRK09669 194 VVLFFCCFF 202 (444)
T ss_pred HHHHHHHhC
Confidence 666555443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.0062 Score=65.83 Aligned_cols=129 Identities=19% Similarity=0.281 Sum_probs=88.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhc----CchhHHHHHHHHHhhhhhhcchhH
Q 008514 399 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG----WPGAMYVGTLLIGLGYGAHWAIVP 474 (563)
Q Consensus 399 ~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~----~~~~l~~~~~l~Gl~~G~~~~l~p 474 (563)
..+...++..+|-++.|+++||+|||+.. .+...+..++.++.... ....+.++-.+.|++.|+...+.|
T Consensus 51 ~~~~~~~g~~~G~~~~g~~~d~~GRk~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~ 124 (451)
T PF00083_consen 51 LTSSFFIGAIVGALIFGFLADRYGRKPAL------IISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP 124 (451)
T ss_pred HHHHHHhhhcccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 67888889999999999999999997654 33344445555444433 345677788999999999999999
Q ss_pred HHHHHhhccCcchhhhhhhhhchhhhhhhccCCC-CCCCCccccCcccHHHHHHHHHHHHHH
Q 008514 475 AAASELFGLKKFGALYNFLTLANPAGSIFTSMPR-VDEPLKCEGSICYFLTSMIMSGLCIVA 535 (563)
Q Consensus 475 ~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~~~~-~~~~~~C~G~~cy~~~f~i~~~~~~~~ 535 (563)
.++.|.=..|+=|..-.+..++..+|..+..... .-. ...+..-+|..+.+....+++.
T Consensus 125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~--~~~~~~~Wr~~~~~~~~~~l~~ 184 (451)
T PF00083_consen 125 IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVS--YYSDNWGWRILLIFGAIPSLLV 184 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccc
Confidence 9999999998888877777776666655443211 000 0011223666666665555443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.83 Score=50.30 Aligned_cols=148 Identities=16% Similarity=0.192 Sum_probs=86.7
Q ss_pred HHhhhCCChhhHHHH-HHHHhhhhhhhhcchhhhccc-hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 008514 42 IKSSLNYNQKQIARL-GVAKDLGDSVGFLAGSLCEVL-PIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFV 119 (563)
Q Consensus 42 Lk~~lg~sq~~l~~i-~~a~~vG~~~gi~~G~l~D~~-gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l 119 (563)
+++.+|+||++-..+ +.....-=...+++|++.||+ |.|-++..|+++..+|+..+. .++. .. +. .+.+-..+
T Consensus 52 ~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~--~~~~-~~-~~-gl~i~L~~ 126 (498)
T COG3104 52 LGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLA--ISSV-SG-PG-GLYIGLAL 126 (498)
T ss_pred ccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh--cccc-cc-cc-HHHHHHHH
Confidence 333477999987775 444433323478999999999 999999999999999999854 3321 11 11 22322222
Q ss_pred hccCcchhhhhHHHHHHHhcC-CC-CCcchhhhHhhhh--hhHHHHHHHHHHhcCCChhH-HHHHHHHHHHHHHHhhhee
Q 008514 120 GNNGETYFNTAALVSCVQNFP-KS-RGPVVGILKGFAG--LGGAILTQVYTMIHAPDHAN-LIFMVAVGPAMVVIALMFI 194 (563)
Q Consensus 120 ~g~g~~~~~ta~l~t~~k~FP-~~-RG~~~Gl~~a~~G--LSa~i~s~i~~~~f~~~~~~-fll~la~~~~~v~l~~~~~ 194 (563)
.+.|.|.+=+.+-.-.-+-+| |+ | +-.|...=+.| ++ .+++++.......+... .-+-++.+....+++-..+
T Consensus 127 I~iG~Gl~K~NiS~llg~ly~~~Dpr-rD~gFt~fY~~iNiG-sl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~ 204 (498)
T COG3104 127 IIVGTGLFKPNISSLLGELYPKDDPR-RDGGFTLFYMGINIG-SLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLL 204 (498)
T ss_pred HHhccccccccHHHHHHHhcCCCCcc-cCCCccEEEEEeehH-HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 336777775555555567786 33 4 44444333333 33 35555555554443332 2233444566666666665
Q ss_pred ec
Q 008514 195 IR 196 (563)
Q Consensus 195 vr 196 (563)
-|
T Consensus 205 ~~ 206 (498)
T COG3104 205 GR 206 (498)
T ss_pred cc
Confidence 55
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.29 Score=52.24 Aligned_cols=92 Identities=21% Similarity=0.228 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhcCchhHHHH-HHHHHhhhhhhcchhHHHH
Q 008514 399 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVG-TLLIGLGYGAHWAIVPAAA 477 (563)
Q Consensus 399 ~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~~~~l~~~-~~l~Gl~~G~~~~l~p~i~ 477 (563)
.=|.+++..++.-..||-+|||.|| |+.+++ .....++..++++....-.+.+. =.+.|+ +=+..++.-+++
T Consensus 73 lGSsF~ilQ~~sS~~~G~~SD~yGR-----kpvll~-c~~~va~s~ll~~~S~~F~afv~aR~l~Gi-~kgnl~v~rAii 145 (451)
T KOG2615|consen 73 LGSSFSILQFISSPLWGCLSDRYGR-----KPVLLA-CLIGVALSYLLWALSRNFAAFVLARFLGGI-FKGNLSVIRAII 145 (451)
T ss_pred HhhHHHHHHHHhhhhhhhhhhhhCc-----hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCchHHHHHHH
Confidence 4578999999999999999999999 333333 22333345555554433223333 344444 445678999999
Q ss_pred HHhhccCcchhhhhhhhhch
Q 008514 478 SELFGLKKFGALYNFLTLAN 497 (563)
Q Consensus 478 se~FG~k~fg~nyg~~~~a~ 497 (563)
+|.+-.|+-+.-.+.+.++.
T Consensus 146 sdV~sek~r~l~ms~v~~a~ 165 (451)
T KOG2615|consen 146 SDVVSEKYRPLGMSLVGTAF 165 (451)
T ss_pred HhhcChhhccceeeeeehhh
Confidence 99999888666655554433
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=93.82 E-value=12 Score=40.70 Aligned_cols=131 Identities=12% Similarity=0.135 Sum_probs=77.1
Q ss_pred HHHhhc--HHHHHHHHHHHhhccchheeeechHHHHHH-hCC-Cchh----HHHHHHHHHHhhhhhhhhhhhhhhhhhcC
Q 008514 355 TQALIK--ADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGY-DNTH----IFVSMISIWNFLGRVGGGYFSEIIVRDYA 426 (563)
Q Consensus 355 ~~~l~s--~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~-~~~~----~~Vsl~si~n~~GRl~~G~lsD~~~~~~~ 426 (563)
+++.++ ...|-+|+++.. +|-..+.|-.|.+=+ ..- ++.. ..-++..+.++++-+..|++..+..+
T Consensus 241 ~~~y~~~~ll~WSlWWa~at---cgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~--- 314 (412)
T PF01770_consen 241 KSCYSNPRLLLWSLWWAFAT---CGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDR--- 314 (412)
T ss_pred HHHhcCchHHHHHHHHHHHH---hHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHH---
Confidence 444444 467889988743 333333344443332 211 1111 13345556677788888888544333
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhh
Q 008514 427 YPRPVAMAVAQFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNF 492 (563)
Q Consensus 427 ~~r~~~l~~~~~~~~~~~lll~~~~-~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~ 492 (563)
...+.+....++.+...++..... ....|.+-++.+..|-....+.-.=++..--.+.||-.+|+
T Consensus 315 -~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGi 380 (412)
T PF01770_consen 315 -WGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGI 380 (412)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeee
Confidence 223344444444444333333333 34677788888999988888888888888888888888876
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.089 Score=57.17 Aligned_cols=135 Identities=16% Similarity=0.183 Sum_probs=89.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHH
Q 008514 399 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAA 477 (563)
Q Consensus 399 ~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~ 477 (563)
.-.++.+.-.+.-.+.|++.||.-|++- +.+...+-.++.+.-.+ ..-..+.+.=.+.|++--....+.|+++
T Consensus 73 l~~vf~v~~~i~sPl~gyLadryNR~~v------~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~I 146 (493)
T KOG1330|consen 73 LQTVFIVVFMIASPLFGYLADRYNRKRV------IAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLI 146 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcCcceE------EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHh
Confidence 4456677777778999999999977442 22222222222211111 1122456677889999999999999999
Q ss_pred HHhhccCcchhhhhhhhhchhhhhhhccCCC-CCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008514 478 SELFGLKKFGALYNFLTLANPAGSIFTSMPR-VDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 543 (563)
Q Consensus 478 se~FG~k~fg~nyg~~~~a~~vg~~l~~~~~-~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~ 543 (563)
+|.|--.+=|+-+|+++++.++|+.+.-... .-.+ -+.-+|.+|.+.+.+.++..++..++.
T Consensus 147 aD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~----~~~~Wr~af~~~avl~vi~~~L~~~f~ 209 (493)
T KOG1330|consen 147 ADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVAS----LTFWWRWAFRGSAVLGVIVGLLVFLFV 209 (493)
T ss_pred hhcCcchhhhHHHHHhhhhcccccceeEEeeeeecc----CccceEEEEEeehHHHHHHHHHHHhhc
Confidence 9999999999999999988888866544211 0000 012388899888888877666655533
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.91 E-value=1.3 Score=48.64 Aligned_cols=154 Identities=16% Similarity=0.293 Sum_probs=112.1
Q ss_pred hhhhccchHHHHHHHHHHHHhcCcccccccccHHHHhh--hCCChhhHHHH-HHHHhhhhhh-hhcchhhh---ccchhH
Q 008514 8 FVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSS--LNYNQKQIARL-GVAKDLGDSV-GFLAGSLC---EVLPIW 80 (563)
Q Consensus 8 ~~~~~~~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~--lg~sq~~l~~i-~~a~~vG~~~-gi~~G~l~---D~~gp~ 80 (563)
+.+...++++.++.=...-...-+.|=.++|-..+.-. .+.+...+..+ ++...+|... |++.+.+- +++|.+
T Consensus 233 ~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~ 312 (461)
T KOG3098|consen 233 TFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRK 312 (461)
T ss_pred HHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccC
Confidence 33445566666555555555566677788898888765 44444444444 6666677655 66666665 445789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC-----------chHHHHHHHHHHhccCcchhhhhHHHHHHHhcCCCCCcchhh
Q 008514 81 GALLVGALQNFIGYGWVWLIVTGRAPV-----------LPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGI 149 (563)
Q Consensus 81 ~~~~iG~~~~~~Gy~~~~l~~~g~i~~-----------~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~~RG~~~Gl 149 (563)
++.++|.+.+..++.+..+..-...|- +++..-.+.+++.|.|.++.++...+.+..-+|++|-.+-.+
T Consensus 313 ~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi 392 (461)
T KOG3098|consen 313 PTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDDRAQAFSL 392 (461)
T ss_pred cchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 999999999999999988777655530 123233456777889999999999999999999999999999
Q ss_pred hHhhhhhhHHHH
Q 008514 150 LKGFAGLGGAIL 161 (563)
Q Consensus 150 ~~a~~GLSa~i~ 161 (563)
.|-+.++.+.+.
T Consensus 393 ~kfyq~~~s~v~ 404 (461)
T KOG3098|consen 393 FKFYQSVASCVA 404 (461)
T ss_pred HHHHHHHHHHHH
Confidence 999999888664
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.65 E-value=1.2 Score=49.01 Aligned_cols=152 Identities=15% Similarity=0.091 Sum_probs=89.3
Q ss_pred hCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhcC----c--hhHHHHHHHH
Q 008514 391 LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW----P--GAMYVGTLLI 462 (563)
Q Consensus 391 ~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~----~--~~l~~~~~l~ 462 (563)
.|.++.. ....+--+..++.=++.|+++||..+|++--|||++........+..+++...+ . ...++.-++.
T Consensus 43 ~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~ 122 (467)
T COG2211 43 FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLL 122 (467)
T ss_pred cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHH
Confidence 4666653 356677788999999999999999988888999998877776666666665442 1 2355566777
Q ss_pred Hhhhhhh----cchhHHHHHHh------hccCcchhhhhhhhhchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHH
Q 008514 463 GLGYGAH----WAIVPAAASEL------FGLKKFGALYNFLTLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLC 532 (563)
Q Consensus 463 Gl~~G~~----~~l~p~i~se~------FG~k~fg~nyg~~~~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~ 532 (563)
+++|-.. .++.|.+|.|+ -+-|.++.+=|.+.++....|++--... ++ ....|+.+-. .++
T Consensus 123 ~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~--~~----~~~g~~~~~~---~~~ 193 (467)
T COG2211 123 GLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGG--GD----KALGYQGTAL---VLG 193 (467)
T ss_pred HHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--Cc----chhhHHHHHH---HHH
Confidence 8888764 34555555443 3333444444433333333332211111 11 0123444443 444
Q ss_pred HHHHHHHHHHHhhhhhhhh
Q 008514 533 IVAVILSMILVHRTTNVYS 551 (563)
Q Consensus 533 ~~~~~l~l~l~~R~r~~~~ 551 (563)
+++.++.++..+.+|+++.
T Consensus 194 vi~~i~~l~~~~~v~ER~~ 212 (467)
T COG2211 194 VIGVILLLFCFFNVKERVV 212 (467)
T ss_pred HHHHHHHHHHHHHhhcccC
Confidence 5566666666666777664
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.57 E-value=14 Score=41.13 Aligned_cols=153 Identities=17% Similarity=0.107 Sum_probs=97.8
Q ss_pred ccchHHHHHHHHHHHHhcCcc---cccccccHHHHhhhCCChhhHHHHHHHHhhhh-hhhhcchhhhccchh-HHHHHHH
Q 008514 12 FNNRWLVFVAAMWIQSCAGIG---YLFGSISPVIKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLPI-WGALLVG 86 (563)
Q Consensus 12 ~~~Rw~~l~a~~~i~l~~Gt~---Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~-~~gi~~G~l~D~~gp-~~~~~iG 86 (563)
.+.+|..+....+.++..+.. |.=|.|.-..|-..+-+.+...++..+..+|. .+.+..|....|.+. |.++.+|
T Consensus 29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s 108 (488)
T KOG2325|consen 29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVS 108 (488)
T ss_pred cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHH
Confidence 467898888887777776655 33344433333346666777777655566666 458889999988875 7778888
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHH--HHHhcCCCCCcchhhhHhhhhhhHHHHHHH
Q 008514 87 ALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVS--CVQNFPKSRGPVVGILKGFAGLGGAILTQV 164 (563)
Q Consensus 87 ~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t--~~k~FP~~RG~~~Gl~~a~~GLSa~i~s~i 164 (563)
.+...+|-.+. +++.-+. +...|+|.+--++.|.|.+.. +.+-+ +.++.|++|-++......++-+| .++.+.
T Consensus 109 ~ii~~~g~llY-~~l~~~~-~~~~y~mL~~R~l~Gvg~~n~--a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg-~ilGp~ 183 (488)
T KOG2325|consen 109 FLIAIIGNLLY-LALAYVP-NGVKYLMLVARILTGVGVGNF--AVLRAYIADASTVEDRPRAFAATSGGFVLG-IILGPT 183 (488)
T ss_pred HHHHHHHHHHH-HHHHhcc-cchHHHHHHHHHHcCcCcccH--HHHHHHHHhccCccchHHHHHHhhhHHHHH-HHHhHH
Confidence 88888888754 4554443 324555554555566766643 55554 45678888877777666644444 345555
Q ss_pred HHHhc
Q 008514 165 YTMIH 169 (563)
Q Consensus 165 ~~~~f 169 (563)
...+|
T Consensus 184 ~q~~f 188 (488)
T KOG2325|consen 184 IQLAF 188 (488)
T ss_pred HHHHH
Confidence 55555
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.51 Score=49.95 Aligned_cols=86 Identities=20% Similarity=0.141 Sum_probs=64.5
Q ss_pred cccccccccHHHHhhhCCChhhHHHHHHHHhhhh-hhhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 008514 31 IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD-SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLP 109 (563)
Q Consensus 31 t~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~-~~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s 109 (563)
..|.|.+| +++|++..|++.+=+++.... .+|.+.|.+.||+|+|..+++-++++.+... +.+.+ .
T Consensus 54 GpY~Y~LY-----~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl------~k~~~--~ 120 (354)
T PF05631_consen 54 GPYLYALY-----ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL------TKHSS--N 120 (354)
T ss_pred cchhHHHH-----HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH------HHhcc--c
Confidence 45888777 469999999999755555555 5699999999999999999888887766664 24443 4
Q ss_pred HHHHHHHHHHhccCcchhhh
Q 008514 110 LWAMCILIFVGNNGETYFNT 129 (563)
Q Consensus 110 ~~~l~~~~~l~g~g~~~~~t 129 (563)
++.+.+--+++|.+.+..++
T Consensus 121 ~~~L~~GRvlgGiaTSLLfS 140 (354)
T PF05631_consen 121 YPVLLLGRVLGGIATSLLFS 140 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 66666666888887775544
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.82 Score=50.44 Aligned_cols=146 Identities=22% Similarity=0.249 Sum_probs=92.2
Q ss_pred ccchHHHHHHHHHHH-HhcC-cc-cccccccHHHHhhhCCChhhHHH-HHHHHhhhhhhhhcch-hhhccchhHHHHHHH
Q 008514 12 FNNRWLVFVAAMWIQ-SCAG-IG-YLFGSISPVIKSSLNYNQKQIAR-LGVAKDLGDSVGFLAG-SLCEVLPIWGALLVG 86 (563)
Q Consensus 12 ~~~Rw~~l~a~~~i~-l~~G-t~-Y~fS~ys~~Lk~~lg~sq~~l~~-i~~a~~vG~~~gi~~G-~l~D~~gp~~~~~iG 86 (563)
.+..+..+.....+. ...| .. .. -.| +|.+++|++++.+. .++...++.....+.. .+.-..|-+.++.+|
T Consensus 239 ~r~~l~l~l~~~~~~~~~~~~~~~~~-~~y---l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lG 314 (463)
T KOG2816|consen 239 DRLLLLLLLVAFLSSLPEAGGASDVL-LLY---LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLG 314 (463)
T ss_pred CccchHHHHHHHHHHHHHhcCceeEE-EEE---EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHH
Confidence 344455455544443 3322 22 22 334 78899999999996 4666666654444433 666677777788999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHH-hcCCCCCcchhhhHhhhhhhHHHHHHHH
Q 008514 87 ALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQ-NFPKSRGPVVGILKGFAGLGGAILTQVY 165 (563)
Q Consensus 87 ~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k-~FP~~RG~~~Gl~~a~~GLSa~i~s~i~ 165 (563)
.+....+..++... - ..|+++....+.+.+.. ..++--.-..| ..||++|++-++....-+|++.+.+.+|
T Consensus 315 l~~~~~~~~~~af~--~-----~~w~~~~~~v~~~~~~~-~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~ 386 (463)
T KOG2816|consen 315 LLSEFLQLLLFAFA--T-----ETWMMFAAGVVVALAGI-VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALY 386 (463)
T ss_pred HHHHHHHHHHHHHh--c-----cchhhhHHHHHHHhhcc-hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHH
Confidence 98887777654322 1 34777665555543322 22232222223 3479999999999999999998888888
Q ss_pred HHhc
Q 008514 166 TMIH 169 (563)
Q Consensus 166 ~~~f 169 (563)
..+|
T Consensus 387 ~~i~ 390 (463)
T KOG2816|consen 387 GNIF 390 (463)
T ss_pred HHHH
Confidence 7553
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=90.14 E-value=4.6 Score=44.33 Aligned_cols=26 Identities=12% Similarity=-0.152 Sum_probs=18.7
Q ss_pred hhcchhhhccchhHHHHHHHHHHHHH
Q 008514 67 GFLAGSLCEVLPIWGALLVGALQNFI 92 (563)
Q Consensus 67 gi~~G~l~D~~gp~~~~~iG~~~~~~ 92 (563)
.++++.+.||+++|.+...+.+...+
T Consensus 280 ~~l~~~l~~r~gkk~~~~~~~~~~~~ 305 (460)
T PRK11462 280 SALAKPLTDWKCKVTIFWWTNALLAV 305 (460)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 46789999999998876655544333
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=89.53 E-value=2.7 Score=47.13 Aligned_cols=135 Identities=15% Similarity=0.153 Sum_probs=68.6
Q ss_pred HHHHHHHhhccchheeeechHHHHHH-hCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHH-HHHH-H
Q 008514 365 LIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMA-VAQF-V 439 (563)
Q Consensus 365 ll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~-~~~~-~ 439 (563)
++.+.+++..++++.+=--...+..- +|.+..+ ..++++=.+-++|-.++|.+.++..+ ..... +... +
T Consensus 18 ~l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~------~~~~~e~~i~l~ 91 (521)
T PRK03612 18 LLLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAA------GFVAVELLLALL 91 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHH
Confidence 34455556666666654444444442 3544332 35566666666666666655432222 11111 1111 1
Q ss_pred HHHHHH-HHh---hcC--chhHHHHHHHHHhhhhhhcchhHHHHHHhhc---cCcchhhhhhhhhchhhhhhhcc
Q 008514 440 MAIGHI-FLG---MGW--PGAMYVGTLLIGLGYGAHWAIVPAAASELFG---LKKFGALYNFLTLANPAGSIFTS 505 (563)
Q Consensus 440 ~~~~~l-ll~---~~~--~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG---~k~fg~nyg~~~~a~~vg~~l~~ 505 (563)
..++.. +.. ... ...++....+.++..|+++.+..-+..+.-. -++.|+.|+.=++|+.+|+++.+
T Consensus 92 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~ 166 (521)
T PRK03612 92 GGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFP 166 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHH
Confidence 111111 111 101 1123445566789999987776666655422 15677777777788888888777
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.86 E-value=14 Score=40.79 Aligned_cols=108 Identities=13% Similarity=0.190 Sum_probs=72.5
Q ss_pred CCCchh--HHHHHHHHHHhhhhhhhh-hhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHhhhhh
Q 008514 392 GYDNTH--IFVSMISIWNFLGRVGGG-YFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGA 468 (563)
Q Consensus 392 g~~~~~--~~Vsl~si~n~~GRl~~G-~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~~~~l~~~~~l~Gl~~G~ 468 (563)
|.++.+ .+.++.++.+..+-++.. .++-.++.++ .+.+......+..+++++......+.....+..--+.
T Consensus 273 ~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~------~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~ 346 (463)
T KOG2816|consen 273 GWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKR------LISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGI 346 (463)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------HhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcc
Confidence 555543 377788888888888777 5553333322 3455555566666666766644444455555555666
Q ss_pred hcchhHHHHHHhhccCcchhhhhhhh----hchhhhhhhcc
Q 008514 469 HWAIVPAAASELFGLKKFGALYNFLT----LANPAGSIFTS 505 (563)
Q Consensus 469 ~~~l~p~i~se~FG~k~fg~nyg~~~----~a~~vg~~l~~ 505 (563)
.+..+=++++.+=+.+..|++++++. +++.++|.+++
T Consensus 347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~ 387 (463)
T KOG2816|consen 347 VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYG 387 (463)
T ss_pred hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHH
Confidence 77777788899999999999999987 46677777776
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=88.61 E-value=2.8 Score=40.51 Aligned_cols=110 Identities=25% Similarity=0.255 Sum_probs=67.9
Q ss_pred cHHHHhhhCCCh--hhHHHHHHHHhhhhhhh-hcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Q 008514 39 SPVIKSSLNYNQ--KQIARLGVAKDLGDSVG-FLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCI 115 (563)
Q Consensus 39 s~~Lk~~lg~sq--~~l~~i~~a~~vG~~~g-i~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~ 115 (563)
.+.+.+.++.+. .+...+.....++...+ ++.|.+.|++|+|.....+......+..... +... .+.+.+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~ 99 (338)
T COG0477 25 LPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLA--LAPN---VGLALLLI 99 (338)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHH--hCcc---chHHHHHH
Confidence 344444555554 35566555555555553 7999999999988776666654334422211 1111 23455554
Q ss_pred HHHHhccCcchhhhhHHHHHHHhcCC--CCCcchhhhHhh
Q 008514 116 LIFVGNNGETYFNTAALVSCVQNFPK--SRGPVVGILKGF 153 (563)
Q Consensus 116 ~~~l~g~g~~~~~ta~l~t~~k~FP~--~RG~~~Gl~~a~ 153 (563)
...+.|.+.+..+........+++|+ +|+...++....
T Consensus 100 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (338)
T COG0477 100 LRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLG 139 (338)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 44446677777777888888889996 678777777664
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=88.53 E-value=2.3 Score=39.81 Aligned_cols=86 Identities=15% Similarity=0.057 Sum_probs=60.8
Q ss_pred hhhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCC
Q 008514 65 SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSR 143 (563)
Q Consensus 65 ~~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~R 143 (563)
...+++..+.++.|||+.+++|.+. |...-+++- -| ..|.+.....+.|.|.+...++--....++-. ++|
T Consensus 52 ~s~l~~P~iv~~lg~K~sm~lg~~~----y~~y~~~~~--~~--~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~ 123 (156)
T PF05978_consen 52 ISCLFAPSIVNKLGPKWSMILGSLG----YAIYIASFF--YP--NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETI 123 (156)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHH----HHHHHHHHH--hh--hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHH
Confidence 3356677889999999999999984 443322321 12 34666667788889999888887766667664 458
Q ss_pred CcchhhhHhhhhhhH
Q 008514 144 GPVVGILKGFAGLGG 158 (563)
Q Consensus 144 G~~~Gl~~a~~GLSa 158 (563)
++-.|+-.+.+-.|.
T Consensus 124 ~~~~~ifw~i~~~s~ 138 (156)
T PF05978_consen 124 GRNTGIFWAIFQSSL 138 (156)
T ss_pred hhHHHHHHHHHHHHH
Confidence 988888877777653
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.32 E-value=1.1 Score=49.57 Aligned_cols=136 Identities=18% Similarity=0.212 Sum_probs=92.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHh---hcCchhHHHHHHHHHhhhhhhcchhHH
Q 008514 399 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG---MGWPGAMYVGTLLIGLGYGAHWAIVPA 475 (563)
Q Consensus 399 ~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~---~~~~~~l~~~~~l~Gl~~G~~~~l~p~ 475 (563)
..|-+.++-.++.+-.|++.||++.|+. +....++.+++.++.- ......+.+.=++-|+++|..+..+..
T Consensus 78 i~ss~~~G~i~~~iP~g~l~~k~G~r~v------~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~ 151 (466)
T KOG2532|consen 78 IFSSFFWGYILGQIPGGYLADKFGARRV------FFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGS 151 (466)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHcCchHH------HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhc
Confidence 5566677778888999999999977442 2333344444443322 111224566788889999999999999
Q ss_pred HHHHhhccCcchhhhhhhhhchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008514 476 AASELFGLKKFGALYNFLTLANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 543 (563)
Q Consensus 476 i~se~FG~k~fg~nyg~~~~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~ 543 (563)
++++++.+++-++-.++++.+.-+|+.+.--. ...-|.-.-.++..|++.+++.++-.++-.++.
T Consensus 152 i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~---sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~ 216 (466)
T KOG2532|consen 152 ILAKWAPPNERSTFIAILTAGSQLGTIITMPV---SGLLCESSLGWPSIFYVFGIVGLIWFILWFLFY 216 (466)
T ss_pred eeeeECCHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHhccCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998886665555542211 011344345589999999888776555544443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=87.45 E-value=4 Score=39.38 Aligned_cols=93 Identities=20% Similarity=0.293 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh--c-CchhHHHHHHHHHhhhhhhcchh
Q 008514 397 HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM--G-WPGAMYVGTLLIGLGYGAHWAIV 473 (563)
Q Consensus 397 ~~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~--~-~~~~l~~~~~l~Gl~~G~~~~l~ 473 (563)
....+...+...++.+..|.++||.+|| +........ ..++.++... . ....+.....+.|++.|......
T Consensus 42 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 115 (338)
T COG0477 42 GLLLSAFFLGYAIGSLLAGPLGDRYGRR----KVLIIGLLL--FLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVA 115 (338)
T ss_pred HHHHHHHHHHHHHHhhhhhhccccccch----HHHHHHHHH--HHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHH
Confidence 3477888888999999999999999765 222222211 2222222222 2 12345555566899999999999
Q ss_pred HHHHHHhhcc-Ccchhhhhhhhh
Q 008514 474 PAAASELFGL-KKFGALYNFLTL 495 (563)
Q Consensus 474 p~i~se~FG~-k~fg~nyg~~~~ 495 (563)
..+++|.+.. ++.+..++....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~ 138 (338)
T COG0477 116 SALLSEWFPEATERGLAVGLVTL 138 (338)
T ss_pred HHHHHHhcCchhHHHHHHHHHHH
Confidence 9999999986 566666665544
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.03 E-value=5.2 Score=41.47 Aligned_cols=154 Identities=12% Similarity=0.166 Sum_probs=89.0
Q ss_pred hhhhccchHHHHHHHHHHHHhcCcccccccccHHHHhhhCCChhhHHHH-HHHHhhhhhhhhcchhhhccchhHHHH-HH
Q 008514 8 FVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARL-GVAKDLGDSVGFLAGSLCEVLPIWGAL-LV 85 (563)
Q Consensus 8 ~~~~~~~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i-~~a~~vG~~~gi~~G~l~D~~gp~~~~-~i 85 (563)
|+..+..-|+....++.--.+-=.-|+ +=..-.++|+|+|..+.+.| ++.-.+........|.+.||+|..... +.
T Consensus 259 v~~f~ppfw~~~iicv~yyva~fPFi~--lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~ 336 (459)
T KOG4686|consen 259 VNTFYPPFWVLVIICVLYYVAWFPFIT--LGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVAS 336 (459)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHhh--hhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHH
Confidence 444555667776666554433211111 11223678999999888886 777777777788899999999995543 33
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhc-CCC-CCcchhhhHhhhhhhHHHHHH
Q 008514 86 GALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNF-PKS-RGPVVGILKGFAGLGGAILTQ 163 (563)
Q Consensus 86 G~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~F-P~~-RG~~~Gl~~a~~GLSa~i~s~ 163 (563)
+.+....|-.++ .++-. .|+..|++.++ +-.. ..|++=-|+..- |++ -|++-|...+---|+=++.+.
T Consensus 337 a~~~tl~~H~~l--~Ft~l---sPy~~m~~lGL----sysl-lAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~I 406 (459)
T KOG4686|consen 337 ACILTLLGHSGL--FFTFL---SPYTSMTFLGL----SYSL-LACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPI 406 (459)
T ss_pred HHHHHHHHhhhH--Hhhhc---cHHHHHHHHhh----hHHH-HHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhh
Confidence 444444555543 33332 13444443222 1111 112233344433 765 699999999888888766665
Q ss_pred HHHHhcCCCh
Q 008514 164 VYTMIHAPDH 173 (563)
Q Consensus 164 i~~~~f~~~~ 173 (563)
|..-+-++|.
T Consensus 407 iag~i~d~~g 416 (459)
T KOG4686|consen 407 IAGFIADGDG 416 (459)
T ss_pred hhheeecCCC
Confidence 5543434444
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=84.17 E-value=14 Score=37.47 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=69.1
Q ss_pred HHHHhhccchheeeec--hHHHHHHhCCCchhH-HHH-HHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHH
Q 008514 368 FSLLLGSGSGLTVIDN--LGQMSQSLGYDNTHI-FVS-MISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIG 443 (563)
Q Consensus 368 ~~~~~~~g~gl~~i~n--~~~i~~~~g~~~~~~-~Vs-l~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~ 443 (563)
..+.+...+|..+... ..++-+.+|++.++. .++ .-.++..+| +..|.+.|+.+. | ..+.+..+...+|
T Consensus 7 a~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp-----~-~~l~iG~~~~~~G 79 (250)
T PF06813_consen 7 ASIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGP-----W-VVLLIGAVLGFVG 79 (250)
T ss_pred HHHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcch-----H-HHHHHHHHHHHHH
Confidence 3444445566655442 334445578887643 333 334555666 888999997743 2 2335555666667
Q ss_pred HHHH--hhcC--c-hhHHHHHHHHHhh-hhhhc--chhHHHHHHhhccCcchhhhhhhhhchhhhhhhccCC
Q 008514 444 HIFL--GMGW--P-GAMYVGTLLIGLG-YGAHW--AIVPAAASELFGLKKFGALYNFLTLANPAGSIFTSMP 507 (563)
Q Consensus 444 ~lll--~~~~--~-~~l~~~~~l~Gl~-~G~~~--~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~~~ 507 (563)
+.++ .... + ..++.......++ .|..| ...-....+.|. +|=|+.=|++--..++++.++++.
T Consensus 80 Y~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i 150 (250)
T PF06813_consen 80 YGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQI 150 (250)
T ss_pred HHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHH
Confidence 6543 2211 1 1222222222222 23333 222233446774 666777777666677777777743
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=83.24 E-value=4 Score=47.09 Aligned_cols=59 Identities=8% Similarity=0.079 Sum_probs=49.5
Q ss_pred HHHhhhCCChhhHHHH-HHHHhhhhhhhhcchhhhccc-hhHHHHHHHHHHHHHHHHHHHH
Q 008514 41 VIKSSLNYNQKQIARL-GVAKDLGDSVGFLAGSLCEVL-PIWGALLVGALQNFIGYGWVWL 99 (563)
Q Consensus 41 ~Lk~~lg~sq~~l~~i-~~a~~vG~~~gi~~G~l~D~~-gp~~~~~iG~~~~~~Gy~~~~l 99 (563)
-+.+.+|+++++...+ +.+..+...+++++|.+.|++ |++.++++|.++..+|+.++.+
T Consensus 13 Yl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai 73 (654)
T TIGR00926 13 YFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF 73 (654)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 3566799999988875 666666667799999999998 9999999999999999987643
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.77 E-value=9.8 Score=40.44 Aligned_cols=164 Identities=14% Similarity=0.099 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHhhccchheeeechHHHHHHhCCCchhH---HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHH
Q 008514 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI---FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 437 (563)
Q Consensus 361 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~~---~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~ 437 (563)
++|...+.....+-..--. .+-...++.|++..++ ++.=+ ..+.+-..+.|.+.||+|||+.. .+.+
T Consensus 37 r~yl~vY~La~~aDWLQGp---Y~Y~LY~~yg~~~~qIa~Lf~~Gf-~Ss~i~g~~~G~laD~~Grk~~c------l~~c 106 (354)
T PF05631_consen 37 RKYLLVYLLAMAADWLQGP---YLYALYESYGFSEHQIAILFVAGF-ASSAIFGTFVGSLADRYGRKKAC------LLFC 106 (354)
T ss_pred HHHHHHHHHHHHHHHhhcc---hhHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCchHHH------HHHH
Confidence 4555555544333222111 2224555667776543 22212 12444466788999999985532 3334
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHhhhhhhcchhHHH-HHHhhccCc-----chhhhhhhh-hchhhhhhhccCCC--
Q 008514 438 FVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAA-ASELFGLKK-----FGALYNFLT-LANPAGSIFTSMPR-- 508 (563)
Q Consensus 438 ~~~~~~~lll~~~~~~~l~~~~~l~Gl~~G~~~~l~p~i-~se~FG~k~-----fg~nyg~~~-~a~~vg~~l~~~~~-- 508 (563)
++-.++++.-.......|+++-++.|++.--.++.+=+- +.|. ..+. .+..++.+. +++.+-+++-+...
T Consensus 107 ily~~scl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh-~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~ 185 (354)
T PF05631_consen 107 ILYSLSCLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEH-NKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANV 185 (354)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHH
Confidence 455566655555666689999999999999888887664 3443 3333 344455443 44433333222110
Q ss_pred -CCCCCccccCcccHHHHHHHHHHHHHHHHHHH
Q 008514 509 -VDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 540 (563)
Q Consensus 509 -~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l 540 (563)
.+ ..|.+ -..+|..++.+++++.++..
T Consensus 186 l~~----~~~~g-~vaPF~~a~~~l~~~~~~I~ 213 (354)
T PF05631_consen 186 LAD----WFGFG-PVAPFDAAIVLLAVAAVLIL 213 (354)
T ss_pred HHH----HhCCC-CcchHHHHHHHHHHHHHHHH
Confidence 00 01111 26778888887777766543
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=81.46 E-value=4.2 Score=43.10 Aligned_cols=101 Identities=17% Similarity=0.295 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHH--hh-cCc-------hhHHHHHHHHHhhhhhhcchhHHHHHHhhccCc---chhhhhhhhh----
Q 008514 433 MAVAQFVMAIGHIFL--GM-GWP-------GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKK---FGALYNFLTL---- 495 (563)
Q Consensus 433 l~~~~~~~~~~~lll--~~-~~~-------~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~---fg~nyg~~~~---- 495 (563)
+.+...+..+|++++ +. ... ..++++-.+++++.|+.=+-.+++.+|.|-.++ -.+-|++.+.
T Consensus 4 I~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~ 83 (372)
T PF00854_consen 4 ILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINI 83 (372)
T ss_dssp HHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhh
Confidence 345566677777663 22 211 368999999999999999999999999999663 2233344444
Q ss_pred chhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 008514 496 ANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 541 (563)
Q Consensus 496 a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~ 541 (563)
|..++..+.+..+ -..+|...|.+.....++++++.+.
T Consensus 84 G~~~~~~~~~~i~--------~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 84 GSLFSPTLVPYIQ--------QNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHCCCHHH--------HCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhcccchhhc--------cccchhhhhhHHHHHHHHHHHHHHh
Confidence 4444444333222 1256999999988877776654433
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 563 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.84 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.84 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.65 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.62 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.53 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.39 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.35 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.52 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 98.42 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.34 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.28 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.24 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 97.56 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 97.34 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=198.11 Aligned_cols=401 Identities=14% Similarity=0.143 Sum_probs=255.4
Q ss_pred hccchHHHHHHHHHHHHhcCc-ccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHH
Q 008514 11 FFNNRWLVFVAAMWIQSCAGI-GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGAL 88 (563)
Q Consensus 11 ~~~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~ 88 (563)
..+.||..+..........+. .+.++.+-+.+.+++ +|.+|..++.....++..+ .++.|.+.||+|+|.++.+|.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 345667766666666555553 477888889999999 9999999987777777755 8899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHH
Q 008514 89 QNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTM 167 (563)
Q Consensus 89 ~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~ 167 (563)
...+|..+....... . +++|.+.+.-++.|.|.+..+.+......+++| ++||.+.|+.-...+++..+-..+...
T Consensus 101 ~~~~~~~~~~~~~~~-~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWA-T--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHHCHHH-H--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHhhhhc-c--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888765441100 1 145666666777888888889999999999998 569999999988888887666544321
Q ss_pred hcCCChhHHHHHHHHHHHHHHHhhheeecccC-CCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHH
Q 008514 168 IHAPDHANLIFMVAVGPAMVVIALMFIIRPVG-GHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIF 246 (563)
Q Consensus 168 ~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~-~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 246 (563)
+. ...+ .+ ..|.. .+ ..
T Consensus 178 l~--------------------------~~~g~w~--------~~f~~-------~~---------------------~~ 195 (451)
T 1pw4_A 178 GM--------------------------AWFNDWH--------AALYM-------PA---------------------FC 195 (451)
T ss_dssp HH--------------------------HHTCCST--------TCTHH-------HH---------------------HH
T ss_pred HH--------------------------HHhccHH--------HHHHH-------HH---------------------HH
Confidence 10 0000 00 00100 00 00
Q ss_pred HHHHHHHhhcccccchhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHH
Q 008514 247 TVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQ 326 (563)
Q Consensus 247 ~~i~~~ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (563)
..+..++... +.++++++. +.+++++.+ ++.+++. ++
T Consensus 196 ~~~~~~~~~~---------~~~~~~~~~-----~~~~~~~~~---------------~~~~~~~------~~-------- 232 (451)
T 1pw4_A 196 AILVALFAFA---------MMRDTPQSC-----GLPPIEEYK---------------NDYPDDY------NE-------- 232 (451)
T ss_dssp HHHHHHHHHH---------HCCCSSTTT-----CCCSCTTTC---------------CC---------------------
T ss_pred HHHHHHHHHh---------hccCCHhhc-----CCCChhhhc---------------ccccccc------hh--------
Confidence 1111100000 111111100 000000000 0000000 00
Q ss_pred HHHHhhhhhhhhhhhccCCCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchh--HHHHHH
Q 008514 327 ARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMI 403 (563)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~--~~Vsl~ 403 (563)
. .+ + +....+...++.+|++.+|.+.+..++......++......+.++ .|.++.+ ...++.
T Consensus 233 -----------~-~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 297 (451)
T 1pw4_A 233 -----------K-AE-Q--ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 297 (451)
T ss_dssp ---------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHH
T ss_pred -----------h-hh-c--ccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 0 00 0 000112235778999999999998888777666667777777777 6887654 377889
Q ss_pred HHHHhhhhhhhhhhhhhh--hhhcCCchhHHHHHHHHHHHHHHHHHhhc---CchhHHHHHHHHHhhhhhhcchhHHHHH
Q 008514 404 SIWNFLGRVGGGYFSEII--VRDYAYPRPVAMAVAQFVMAIGHIFLGMG---WPGAMYVGTLLIGLGYGAHWAIVPAAAS 478 (563)
Q Consensus 404 si~n~~GRl~~G~lsD~~--~~~~~~~r~~~l~~~~~~~~~~~lll~~~---~~~~l~~~~~l~Gl~~G~~~~l~p~i~s 478 (563)
++++.+|++++|+++||+ +|| ........+...++.+++... ....+.+...+.|++++..+.....++.
T Consensus 298 ~~~~~~~~~~~g~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 372 (451)
T 1pw4_A 298 EYAGIPGTLLCGWMSDKVFRGNR-----GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHAL 372 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCH-----HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCc-----hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 999999999999999998 552 222222222222444444432 2334566778889999999999999999
Q ss_pred HhhccCcchhhhhhhh----h-chhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008514 479 ELFGLKKFGALYNFLT----L-ANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 548 (563)
Q Consensus 479 e~FG~k~fg~nyg~~~----~-a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r~ 548 (563)
|.+..++.|+.+|+.. + +..+++.+.+...+ ...|+..|.+.+++++++.++.+++.++.++
T Consensus 373 ~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (451)
T 1pw4_A 373 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD--------FFGWDGGFMVMIGGSILAVILLIVVMIGEKR 439 (451)
T ss_dssp HTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------SSCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcCcHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999875 4 55666666554320 0128999999999999988887776655444
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.3e-20 Score=193.30 Aligned_cols=389 Identities=11% Similarity=0.086 Sum_probs=242.0
Q ss_pred ccchHHHHHHHHHHHHhcCcc-cccccccHHHHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHHHHHHH
Q 008514 12 FNNRWLVFVAAMWIQSCAGIG-YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQ 89 (563)
Q Consensus 12 ~~~Rw~~l~a~~~i~l~~Gt~-Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~iG~~~ 89 (563)
.+++|..++.........|.. +.++.+-|.+++++|+|.+|+.++.....++.. ..++.|.+.||+|+|.++.+|.+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 344555555555555555543 688888999999999999999998777777765 488999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHHh
Q 008514 90 NFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMI 168 (563)
Q Consensus 90 ~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~ 168 (563)
..++..+.+... .. +++|.+.+.-++.|.|.+..++++.....+++| ++||.+.|+.-...+++..+-..+...+
T Consensus 101 ~~~~~~~~~~~~--~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 101 YALGAALFWPAA--EI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHHH--HT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhcc--cc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888764432 12 257887777788889999999999999999998 5699999999999999987776555332
Q ss_pred c-CCChh---HHHHHHHHHHHHHHHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHH
Q 008514 169 H-APDHA---NLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVII 244 (563)
Q Consensus 169 f-~~~~~---~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 244 (563)
. +.... .-.. ..+ +++...+...........++..+
T Consensus 177 ~~~~~~~~~~~~~~------------------~~~------~~~~~~~~~~~~~~w~~~~~~~~---------------- 216 (438)
T 3o7q_A 177 ILSNVPHQSQDVLD------------------KMS------PEQLSAYKHSLVLSVQTPYMIIV---------------- 216 (438)
T ss_dssp HHTSSCCCCHHHHH------------------HSC------HHHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred Hhcccccccccccc------------------cCC------cchhhhhhhhhhhhHHHHHHHHH----------------
Confidence 2 11000 0000 000 00000000000000000000000
Q ss_pred HHHHHHHHHhhcccccchhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHH
Q 008514 245 IFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQ 324 (563)
Q Consensus 245 ~~~~i~~~ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (563)
....+..++.+ +.+. ++ ++++.+ ++++ +
T Consensus 217 ~~~~~~~~~~~----------~~~~-p~-----------~~~~~~-------------~~~~--~--------------- 244 (438)
T 3o7q_A 217 AIVLLVALLIM----------LTKF-PA-----------LQSDNH-------------SDAK--Q--------------- 244 (438)
T ss_dssp HHHHHHHHHHH----------HCCC-CC-----------CTTTCC-------------CCSS--T---------------
T ss_pred HHHHHHHHHHH----------HHcC-Cc-----------cccccc-------------cccc--c---------------
Confidence 00000000000 0000 01 000000 0000 0
Q ss_pred HHHHHHhhhhhhhhhhhccCCCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHH-HHHh-CCCchh--HHH
Q 008514 325 LQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQM-SQSL-GYDNTH--IFV 400 (563)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i-~~~~-g~~~~~--~~V 400 (563)
+ ....++++.+|++.+|...+..++..+....+.+...+. .++. |.+... ...
T Consensus 245 ---------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 301 (438)
T 3o7q_A 245 ---------------------G--SFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYL 301 (438)
T ss_dssp ---------------------T--SHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred ---------------------c--chhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHH
Confidence 0 001245678899999999999988888777777888888 7776 887664 377
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHhhhhhhcchhHHHHHHh
Q 008514 401 SMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASEL 480 (563)
Q Consensus 401 sl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~ 480 (563)
++..+.+.+||++.|+++||++||+ .+.....+..++.+++.........+...+.|++++..+.....++.|.
T Consensus 302 ~~~~~~~~~~~~~~g~l~~r~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 375 (438)
T 3o7q_A 302 TGTMVCFFIGRFTGTWLISRFAPHK------VLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKN 375 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchH------HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8889999999999999999997743 2233344445554444444433445566888999999999999999999
Q ss_pred hccCcchhhhhhhh---hchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHH
Q 008514 481 FGLKKFGALYNFLT---LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCI 533 (563)
Q Consensus 481 FG~k~fg~nyg~~~---~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~ 533 (563)
++.+ -++.-++.. ++..++|.+.+... +..+.|+.+|.+.+.+++
T Consensus 376 ~~~~-~~~~~~~~~~~~~g~~~~~~~~g~l~-------~~~g~~~~~~~~~~~~~~ 423 (438)
T 3o7q_A 376 LGQD-TKYGSSFIVMTIIGGGIVTPVMGFVS-------DAAGNIPTAELIPALCFA 423 (438)
T ss_dssp CGGG-HHHHHHHHHHTTHHHHHHHHHHHHHH-------HHHTSSGGGGHHHHHHHH
T ss_pred cccc-ccchhhHHHHHHHHHHHHHHHHHHHH-------HHhcchHHHHHHHHHHHH
Confidence 9955 444444332 45666666665432 011237888877644433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-14 Score=154.46 Aligned_cols=416 Identities=11% Similarity=0.030 Sum_probs=221.4
Q ss_pred cccHHHHhh-----hCCChhhHHHHHHHHhhhhhh-hhcchhhhcc-chhHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 008514 37 SISPVIKSS-----LNYNQKQIARLGVAKDLGDSV-GFLAGSLCEV-LPIWGALLVGALQNFIGYGWVWLIVTGRAPVLP 109 (563)
Q Consensus 37 ~ys~~Lk~~-----lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~-~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s 109 (563)
...+.+++. +|+|.+|..++.....++..+ .+++|.+.|| +|+|.++.+|.++..+|..+.. + . ++
T Consensus 35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~--~---~--~~ 107 (491)
T 4aps_A 35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA--L---P--FG 107 (491)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH--S---C--CS
T ss_pred HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH--H---h--hh
Confidence 344556666 999999999987777777654 7889999999 8999999999998888876542 1 2 24
Q ss_pred HHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CC--CCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 008514 110 LWAMCILIFVGNNGETYFNTAALVSCVQNFP-KS--RGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAM 186 (563)
Q Consensus 110 ~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~--RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~ 186 (563)
+|.+.+.-++.|.|.+...++......++|| ++ ||.+.++.-....+++.+-..+...+.+.......+.+.....+
T Consensus 108 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~ 187 (491)
T 4aps_A 108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMF 187 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5666666777788888888888888999997 45 66677776677777776655555443322222333333333334
Q ss_pred HHHhhheeecccCC-CCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhc
Q 008514 187 VVIALMFIIRPVGG-HRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILS 265 (563)
Q Consensus 187 v~l~~~~~vr~~~~-~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~ 265 (563)
++++...+.++... ++.++++++..-.-... .. +..+.- .....+.. +.. .
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---------~~~g~~-----l~~~~~~~-~~~----~---- 239 (491)
T 4aps_A 188 IGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKP-----LL---------VKVSLA-----VAGFIAII-VVM----N---- 239 (491)
T ss_dssp HHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHH-----HH---------HHCCCC-----CHHHHHHH-HHH----H----
T ss_pred HHHHHHHHhCcccccccccCCCCccccchhHH-----HH---------HHHHHH-----HHHHHHHH-HHH----H----
Confidence 44444333332211 11111111111000000 00 000000 00000000 000 0
Q ss_pred cccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCC
Q 008514 266 FFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRG 345 (563)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (563)
..+..+ . +...... . . ..... .........++
T Consensus 240 -~~~~~~-------------~------~~~~~~~-----------------~---~-----~~~~~-~~~~~~~~~~~-- 271 (491)
T 4aps_A 240 -LVGWNS-------------L------PAYINLL-----------------T---I-----VAIAI-PVFYFAWMISS-- 271 (491)
T ss_dssp -HHSSCC-------------T------THHHHHH-----------------H---H-----HHHHH-HHHHHHHHC----
T ss_pred -hccCcc-------------c------ccchhhh-----------------h---H-----HHHHH-HHHHHHHHhhc--
Confidence 000000 0 0000000 0 0 00000 00000000000
Q ss_pred CCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCC--chhHHHHHHHHHHhhhhhhhhhhhhhhh
Q 008514 346 PHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYD--NTHIFVSMISIWNFLGRVGGGYFSEIIV 422 (563)
Q Consensus 346 p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~--~~~~~Vsl~si~n~~GRl~~G~lsD~~~ 422 (563)
+ ..+..+..+...+|.+++..++....-....+.+....++ .+.+ ......++.++...++.++.|+++||++
T Consensus 272 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~ 347 (491)
T 4aps_A 272 V----KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWK 347 (491)
T ss_dssp --------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred c----cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence 0 0001111233345555544444433333344445555555 3444 2234677888889999999999999998
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHHhh----------cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhh
Q 008514 423 RDYAYPRPVAMAVAQFVMAIGHIFLGM----------GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNF 492 (563)
Q Consensus 423 ~~~~~~r~~~l~~~~~~~~~~~lll~~----------~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~ 492 (563)
||+... ...+.....+.+++.+++.. .....+.+...+.|++.+........++.|.+..++-|+..|+
T Consensus 348 ~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 426 (491)
T 4aps_A 348 KNQPSS-PTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSM 426 (491)
T ss_dssp TC---C-HHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHH
T ss_pred ccCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHH
Confidence 865432 23333444444555433322 1233566688888999999999999999999999999998888
Q ss_pred hh----hchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008514 493 LT----LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNV 549 (563)
Q Consensus 493 ~~----~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r~~ 549 (563)
.. ++..+|+.+.+... ...|...|.+.+++++++.++.+.+.++.|+.
T Consensus 427 ~~~~~~~g~~i~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 427 WFLSSSVGSALNAQLVTLYN---------AKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGG---------GSSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHh---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 45566666554433 12378889888888888887777766665553
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=157.25 Aligned_cols=319 Identities=12% Similarity=0.041 Sum_probs=207.1
Q ss_pred ccccccccHHHHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH
Q 008514 32 GYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPL 110 (563)
Q Consensus 32 ~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~s~ 110 (563)
.+.++.+-+.+++++|+|.+|...+.....++.. ..++.|.+.||+|+|.++.++.+...++..+.... +++
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 88 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSL 88 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccH
Confidence 3445556677899999999999998777777774 48899999999999999999999888887765433 256
Q ss_pred HHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q 008514 111 WAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVI 189 (563)
Q Consensus 111 ~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~~~~~fll~la~~~~~v~l 189 (563)
|.+....++.|.+.+..+++......+++| ++|+++.|+.-...+++..+-..+.....+ ..
T Consensus 89 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~---------------- 151 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-MW---------------- 151 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-HH----------------
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-hc----------------
Confidence 777777778888888888888899999997 679999999998888887666544421110 00
Q ss_pred hhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHhhcccccchhhccccC
Q 008514 190 ALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLE 269 (563)
Q Consensus 190 ~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ll~~~~~i~~~~~~~~~ 269 (563)
..+. .+ ...++..++.... . ..+.+
T Consensus 152 ---------------------~~~~---------~~------------------~~~~~~~~~~~~~-----~-~~~~~- 176 (375)
T 2gfp_A 152 ---------------------NWRA---------CY------------------LFLLVLCAGVTFS-----M-ARWMP- 176 (375)
T ss_dssp ---------------------HHHH---------HH------------------HHHHHHHHHHHCC-----C-CCSSC-
T ss_pred ---------------------cHHH---------HH------------------HHHHHHHHHHHHH-----H-HHHCc-
Confidence 0000 00 0011111100000 0 00010
Q ss_pred CCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCCCcC
Q 008514 270 RTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRG 349 (563)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 349 (563)
| +++++ +++ + .
T Consensus 177 --~---------~~~~~-----------------~~~-~----------------------------------------~ 187 (375)
T 2gfp_A 177 --E---------TRPVD-----------------APR-T----------------------------------------R 187 (375)
T ss_dssp --C---------CSTTT-----------------CCC-C----------------------------------------C
T ss_pred --c---------cCCCC-----------------ccc-c----------------------------------------c
Confidence 0 00000 000 0 0
Q ss_pred CCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcC
Q 008514 350 EDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYA 426 (563)
Q Consensus 350 ~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~ 426 (563)
+..+.++.+|++++|.+.+..++.......+......+.++ .|.++.. ...++.+++..+|+++.|+++||.++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~--- 264 (375)
T 2gfp_A 188 LLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST--- 264 (375)
T ss_dssp TTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH---
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 01123578899999999988887766655565666666665 5666543 36778889999999999999998865
Q ss_pred CchhHHHHHHHHHHHHHHH--HHhh---cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhh
Q 008514 427 YPRPVAMAVAQFVMAIGHI--FLGM---GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGS 501 (563)
Q Consensus 427 ~~r~~~l~~~~~~~~~~~l--ll~~---~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~ 501 (563)
|... .... ....+.+ .+.. .....++....+.|+++|..+.....++.|.+. ++.|+.+|+......+|.
T Consensus 265 --~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~ 339 (375)
T 2gfp_A 265 --LMWQ-SVIC-CLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGS 339 (375)
T ss_dssp --HHHH-HHHH-HHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHH
T ss_pred --HHHH-HHHH-HHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHH
Confidence 1111 1111 0111211 1111 122345567888899999999999999999998 899999998876666666
Q ss_pred hhccC
Q 008514 502 IFTSM 506 (563)
Q Consensus 502 ~l~~~ 506 (563)
.+.+.
T Consensus 340 ~~~~~ 344 (375)
T 2gfp_A 340 GVLAS 344 (375)
T ss_dssp HCCST
T ss_pred HHHHH
Confidence 55553
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=154.00 Aligned_cols=175 Identities=11% Similarity=0.036 Sum_probs=108.9
Q ss_pred HHHHhhcHHHHHHHHHHHhhccchheee-echHHHHHHh-CCC---ch--hHHHHHHHHHHhhhhhhhhhhhhhhhhhcC
Q 008514 354 LTQALIKADFWLIFFSLLLGSGSGLTVI-DNLGQMSQSL-GYD---NT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYA 426 (563)
Q Consensus 354 ~~~~l~s~~Fwll~~~~~~~~g~gl~~i-~n~~~i~~~~-g~~---~~--~~~Vsl~si~n~~GRl~~G~lsD~~~~~~~ 426 (563)
.++.+|++++|.+++..++.. ...... .......++. +.. .. ....++..+.+.+|++..|+++||++||+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~- 290 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVS-CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN- 290 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-
T ss_pred HHHHhcCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-
Confidence 457789999998776644332 122221 2233333332 211 11 12456677889999999999999998743
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhc-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhh-h----hchhhh
Q 008514 427 YPRPVAMAVAQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL-T----LANPAG 500 (563)
Q Consensus 427 ~~r~~~l~~~~~~~~~~~lll~~~-~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~-~----~a~~vg 500 (563)
.+.....+.+++.+++... +...+.+...+.+++++........+++|.+..+.-|+.+|+. . ++..+|
T Consensus 291 -----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~g 365 (417)
T 2cfq_A 291 -----ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFM 365 (417)
T ss_dssp -----HHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHh
Confidence 1223334444444444433 2334555566678888777777788999999999999998874 4 455666
Q ss_pred hhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHH
Q 008514 501 SIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 543 (563)
Q Consensus 501 ~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~ 543 (563)
|.+.+...+ . ..|+..|.+.+++++++.++.+.+.
T Consensus 366 p~l~G~l~~-------~-~g~~~~f~~~~~~~l~~~~~~~~~~ 400 (417)
T 2cfq_A 366 SVLAGNMYE-------S-IGFQGAYLVLGLVALGFTLISVFTL 400 (417)
T ss_dssp THHHHTHHH-------H-SHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hhhHHHHHH-------h-cCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 666554320 0 1288899998888888877665433
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-11 Score=131.85 Aligned_cols=129 Identities=16% Similarity=0.072 Sum_probs=88.9
Q ss_pred ccccccc---HHHHhhhCC----C----hhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHHHHHHHHHHHHHHH
Q 008514 33 YLFGSIS---PVIKSSLNY----N----QKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLI 100 (563)
Q Consensus 33 Y~fS~ys---~~Lk~~lg~----s----q~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~ 100 (563)
|..++++ +.+++.++. + .++..++..+..+|..+ +++.|.+.||+|+|.+++++.++..+|-.+....
T Consensus 26 yd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~ 105 (491)
T 4gc0_A 26 YDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWP 105 (491)
T ss_dssp HHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555 455555533 2 23444556666778766 5789999999999999999999887776643221
Q ss_pred HhcCC-----------CCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcC-CCCCcchhhhHhhhhhhHHHH
Q 008514 101 VTGRA-----------PVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAIL 161 (563)
Q Consensus 101 ~~g~i-----------~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~ 161 (563)
..+.. -+++++.+.+.=++.|.|.+..++.+......+.| ++||...++.-.+..++..+-
T Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~ 178 (491)
T 4gc0_A 106 ELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLV 178 (491)
T ss_dssp TTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhh
Confidence 11100 12457888888888889999888888888899998 469998888776666555443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-11 Score=132.49 Aligned_cols=142 Identities=8% Similarity=0.011 Sum_probs=98.2
Q ss_pred ccchHHHHHHHHHHHHhcCcccccccccHHHHhhhC------CChhhHHHHHHHHhhhhhh-hhcchhhhccc-hhHHHH
Q 008514 12 FNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLN------YNQKQIARLGVAKDLGDSV-GFLAGSLCEVL-PIWGAL 83 (563)
Q Consensus 12 ~~~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg------~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~-gp~~~~ 83 (563)
.++-|...+...+...+.... .+.....+++.+| +|..+...+.....++..+ .+++|.+.||+ |+|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGM--RNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHH--HHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 344455555555444433221 2334445788899 9999999986666777654 77899999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhh---hHhhhhhhHH
Q 008514 84 LVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGI---LKGFAGLGGA 159 (563)
Q Consensus 84 ~iG~~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl---~~a~~GLSa~ 159 (563)
.++.+...+++.+..+. . .++|.+.+..++.|.|.+..+++......++||+ +||.+.++ .-....+++.
T Consensus 89 ~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~ 162 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIF--E----HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSF 162 (524)
T ss_dssp HHHHHHHHHHHHHHHHT--S----SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--c----ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHH
Confidence 99999888887764322 1 1456666666777888888888888889999985 68877766 5555555554
Q ss_pred HH
Q 008514 160 IL 161 (563)
Q Consensus 160 i~ 161 (563)
+-
T Consensus 163 ~g 164 (524)
T 2xut_A 163 FA 164 (524)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.3e-07 Score=97.04 Aligned_cols=171 Identities=13% Similarity=0.145 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHhhccchheeeechHHHHHH------hCCCchhH--HHHHHHHHHhhhhhhhhhhhhh-hhhhcCCchhH
Q 008514 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQS------LGYDNTHI--FVSMISIWNFLGRVGGGYFSEI-IVRDYAYPRPV 431 (563)
Q Consensus 361 ~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~------~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~-~~~~~~~~r~~ 431 (563)
+.+|.+++..++....-..+...+.+..++ +|.++.+. ..++..+.+.++++.+|+++|| ++||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~------ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP------ 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH------
Confidence 467888877776665555555666666665 68876643 7899999999999999999999 88843
Q ss_pred HHHHHHHHHHHHHHHHhhc-CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCc--chhhhhhhh----hchhhhhhhc
Q 008514 432 AMAVAQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKK--FGALYNFLT----LANPAGSIFT 504 (563)
Q Consensus 432 ~l~~~~~~~~~~~lll~~~-~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~--fg~nyg~~~----~a~~vg~~l~ 504 (563)
.+....++..++.+++... +...++++-.+.|++.|......+.+++|+|..++ -++.+++.. ++..+||.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 2344455556665555543 34567788899999999999999999999999877 555666543 4555555554
Q ss_pred cCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhh
Q 008514 505 SMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHR 545 (563)
Q Consensus 505 ~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R 545 (563)
+.... ...|+..|++.+..+++++++.++...|
T Consensus 167 ~~l~~--------~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 167 GAAQE--------AAGYHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp HHHHH--------HSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHh--------hhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 43210 1238999999888777777666555444
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=4.9e-07 Score=94.93 Aligned_cols=172 Identities=13% Similarity=0.087 Sum_probs=116.3
Q ss_pred hcHHHHHHHHHHHhhccchheeeechHHHHHHhCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHH
Q 008514 359 IKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 436 (563)
Q Consensus 359 ~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~ 436 (563)
+.+.++.+++..++....-.++..-+..+.+++ .++.+ ...++..+...++.+.+|+++||++||+ .+.+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~------~l~~~ 98 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV------FLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH------HHHHH
Confidence 345556555555554443333444456666677 66554 3788999999999999999999998843 33444
Q ss_pred HHHHHHHHHHHhh-----cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhch----hhhhhhccCC
Q 008514 437 QFVMAIGHIFLGM-----GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLAN----PAGSIFTSMP 507 (563)
Q Consensus 437 ~~~~~~~~lll~~-----~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~----~vg~~l~~~~ 507 (563)
.++.+++.++... .....++++-++.|++.|..+.....+++|++..|+-++..|+...+. .+|+.+.+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 99 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556555443 334467788999999999999999999999999999999888876443 4444433221
Q ss_pred CCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 008514 508 RVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVH 544 (563)
Q Consensus 508 ~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~ 544 (563)
.. . .| .++.+|++.+.++++..++..+...
T Consensus 179 ~~-~----~g--~w~~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 179 MA-W----FN--DWHAALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp HH-H----TC--CSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred HH-H----hc--cHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 10 0 11 3788898888887776666555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.8e-07 Score=93.13 Aligned_cols=160 Identities=9% Similarity=0.135 Sum_probs=109.2
Q ss_pred HHHHHHHhhccchheeeechHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHH
Q 008514 365 LIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAI 442 (563)
Q Consensus 365 ll~~~~~~~~g~gl~~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~ 442 (563)
++++..++....-.++......+.+++|.++.+. ..++..+.+.++.+.+|+++||++||+.. .....+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~ 77 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI------LVGMSIFML 77 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHH
Confidence 3444444443333444455666777888887654 78899999999999999999999986654 233333444
Q ss_pred HHHHHhh-cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhc----hhhhhhhccCCCCCCCCcccc
Q 008514 443 GHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLA----NPAGSIFTSMPRVDEPLKCEG 517 (563)
Q Consensus 443 ~~lll~~-~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a----~~vg~~l~~~~~~~~~~~C~G 517 (563)
+.++... .+...+++...+.|++.|........+++|++..|+.++..++...+ ..+|+.+.+....
T Consensus 78 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-------- 149 (375)
T 2gfp_A 78 ATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------- 149 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC--------
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------
Confidence 4433333 23346777888999999999999999999999999999888887644 4444444332220
Q ss_pred CcccHHHHHHHHHHHHHHHHH
Q 008514 518 SICYFLTSMIMSGLCIVAVIL 538 (563)
Q Consensus 518 ~~cy~~~f~i~~~~~~~~~~l 538 (563)
...|+..|.+.+.++++..++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~ 170 (375)
T 2gfp_A 150 MWNWRACYLFLLVLCAGVTFS 170 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred hccHHHHHHHHHHHHHHHHHH
Confidence 123888888887776665543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=5.4e-06 Score=86.71 Aligned_cols=116 Identities=16% Similarity=0.130 Sum_probs=86.7
Q ss_pred hHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHH---hh-cCchhHHH
Q 008514 384 LGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFL---GM-GWPGAMYV 457 (563)
Q Consensus 384 ~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll---~~-~~~~~l~~ 457 (563)
+..+.+++|.++.+. ..++..+...++.+.+|.++||++||+. +.+..++.+++.++. .. .+...+++
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~------l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG------IITGLFLYALGAALFWPAAEIMNYTLFLV 122 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH------HHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH------HHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 455667789887754 7899999999999999999999988442 344455555555544 33 33446777
Q ss_pred HHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhh----chhhhhhhcc
Q 008514 458 GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL----ANPAGSIFTS 505 (563)
Q Consensus 458 ~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~----a~~vg~~l~~ 505 (563)
+-.+.|++.|........+++|++..|+-++..|+... +..+|+.+.+
T Consensus 123 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 174 (438)
T 3o7q_A 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999998887776654 4444544443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.5e-06 Score=91.97 Aligned_cols=167 Identities=16% Similarity=0.131 Sum_probs=113.9
Q ss_pred cHHHHHHHHHHHhhccchheeeechHHHHH-HhC------CCchh--HHHHHHHHHHhhhhhhhhhhhhhh-hhhcCCch
Q 008514 360 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLG------YDNTH--IFVSMISIWNFLGRVGGGYFSEII-VRDYAYPR 429 (563)
Q Consensus 360 s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g------~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~-~~~~~~~r 429 (563)
++.+|.+++..++....-.++...+....+ ++| .++.+ ...+++.+...++.+.+|+++||+ +||+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~--- 87 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT--- 87 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH---
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH---
Confidence 467788877777766655555556665544 577 77654 378899999999999999999999 87432
Q ss_pred hHHHHHHHHHHHHHHHHHhhc--CchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchh---hhhhh----hhchhhh
Q 008514 430 PVAMAVAQFVMAIGHIFLGMG--WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGA---LYNFL----TLANPAG 500 (563)
Q Consensus 430 ~~~l~~~~~~~~~~~lll~~~--~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~---nyg~~----~~a~~vg 500 (563)
+.+..++.+++.+++... ....++++..+.|++.|......+++++|+|..++-++ .+|+. .++..+|
T Consensus 88 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g 164 (524)
T 2xut_A 88 ---ILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFA 164 (524)
T ss_dssp ---HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 233444555555554433 34467778889999999999999999999999887643 33333 3555666
Q ss_pred hhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHH
Q 008514 501 SIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 540 (563)
Q Consensus 501 ~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l 540 (563)
+.+.+.... ...|+..|.+.+.+++++.++.+
T Consensus 165 ~~~~~~l~~--------~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 165 SLSMPLLLK--------NFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHTSTHHHH--------TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc--------cccHHHHHHHHHHHHHHHHHHHH
Confidence 665442210 12389999988877766655543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00036 Score=74.06 Aligned_cols=135 Identities=15% Similarity=0.067 Sum_probs=90.5
Q ss_pred CcccccccccHHHHhhhCCChhhHHHHHHHHhhhhh-hhhcchhhhccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 008514 30 GIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVL 108 (563)
Q Consensus 30 Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~-~gi~~G~l~D~~gp~~~~~iG~~~~~~Gy~~~~l~~~g~i~~~ 108 (563)
...+....|.+.+.+..+.+..+....+....+... ..++++.+.||+|+|..++.+.....++...+........+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~- 369 (491)
T 4gc0_A 291 VGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPG- 369 (491)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCH-
T ss_pred hhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccch-
Confidence 345677789999999999998877766555445443 467899999999999999888887777766554444443221
Q ss_pred hHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHHH
Q 008514 109 PLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYT 166 (563)
Q Consensus 109 s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~~ 166 (563)
....++.+.+..+.+.++. ..+-.-...-||. .|+++.|+..+..-+++.+.+.+..
T Consensus 370 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p 427 (491)
T 4gc0_A 370 IVALLSMLFYVAAFAMSWG-PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFP 427 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTT-HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHhHHH-HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222233333344444432 2333456688995 5999999998887788877765553
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=8.6e-05 Score=78.00 Aligned_cols=69 Identities=13% Similarity=0.073 Sum_probs=54.1
Q ss_pred HhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchh--HHHHHHHHHHhhhhhhhhhhhhhhhhhc
Q 008514 357 ALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDY 425 (563)
Q Consensus 357 ~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~--~~Vsl~si~n~~GRl~~G~lsD~~~~~~ 425 (563)
.+|+++||.+....++....-.++..-+....++ +|.++.+ ..+++..+...++++.+|+++||++||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~ 74 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK 74 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCC
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 5789999999887766555444555566665654 7887764 4889999999999999999999999854
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 563 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.87 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.61 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 98.6 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 97.97 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=6e-22 Score=205.85 Aligned_cols=413 Identities=14% Similarity=0.151 Sum_probs=250.5
Q ss_pred hhccchHHHHHHHHHHHHhcC-cccccccccHHHHhhhCCChhhHHHHHHHHhhhhhh-hhcchhhhccchhHHHHHHHH
Q 008514 10 SFFNNRWLVFVAAMWIQSCAG-IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGA 87 (563)
Q Consensus 10 ~~~~~Rw~~l~a~~~i~l~~G-t~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~vG~~~-gi~~G~l~D~~gp~~~~~iG~ 87 (563)
+..+.||.+++...+...+.. ....+++..|.++ ++|+|.+|+.++..+..++..+ .++.|.+.||+|+|.++.+|.
T Consensus 18 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~ 96 (447)
T d1pw4a_ 18 TYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL 96 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 334557887776655444433 3356777778776 5899999999987777777755 789999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcchhhhhHHHHHHHhcCC-CCCcchhhhHhhhhhhHHHHHHHHH
Q 008514 88 LQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYT 166 (563)
Q Consensus 88 ~~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~g~~~~~ta~l~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~~ 166 (563)
++..++..+......- ..+++.+.+..++.|.+.+..+.++.....++||+ +||.+.|+.-.+.++++.+-..+..
T Consensus 97 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 173 (447)
T d1pw4a_ 97 ILAAAVMLFMGFVPWA---TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 173 (447)
T ss_dssp HHHHHHHHHHHHCHHH---HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHhhccccchh---hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhh
Confidence 9887777654332111 01356666677778888888888999999999985 5999999998888888766543332
Q ss_pred HhcCCChhHHHHHHHHHHHHHHHhhheeecccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccccCChhHHHHH
Q 008514 167 MIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIF 246 (563)
Q Consensus 167 ~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 246 (563)
... . ..... ...+.... ..
T Consensus 174 ~~~----------------------~----~~~~w-------~~~~~~~~----------------------------~~ 192 (447)
T d1pw4a_ 174 LGM----------------------A----WFNDW-------HAALYMPA----------------------------FC 192 (447)
T ss_dssp HHH----------------------H----HTCCS-------TTCTHHHH----------------------------HH
T ss_pred hHh----------------------h----hhhcc-------cccchhhh----------------------------hh
Confidence 100 0 00000 00110000 00
Q ss_pred HHHHHHHhhcccccchhhccccCCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhhHHHHHHHHH
Q 008514 247 TVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQ 326 (563)
Q Consensus 247 ~~i~~~ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (563)
..+..++.+. +.++++++. . .+..++.+ ++.+++.+ ++
T Consensus 193 ~~~~~~~~~~---------~~~~~~~~~--~---~~~~~~~~---------------~~~~~~~~-----~~-------- 230 (447)
T d1pw4a_ 193 AILVALFAFA---------MMRDTPQSC--G---LPPIEEYK---------------NDYPDDYN-----EK-------- 230 (447)
T ss_dssp HHHHHHHHHH---------HCCCSSTTT--C---CCSCTTTC---------------CC---------------------
T ss_pred HHHHHHHHHH---------hcccchhhc--c---cchhhhhh---------------hhcccchh-----hc--------
Confidence 0011100000 111111100 0 00000000 00000000 00
Q ss_pred HHHHhhhhhhhhhhhccCCCCcCCCCcHHHHhhcHHHHHHHHHHHhhccchheeeechHHHHHH-hCCCchh--HHHHHH
Q 008514 327 ARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMI 403 (563)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~p~~~~~~t~~~~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~~-~g~~~~~--~~Vsl~ 403 (563)
.++ .....+...++.++++.+|.+....++.......+........++ .+.+..+ ...++.
T Consensus 231 -------------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (447)
T d1pw4a_ 231 -------------AEQ---ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 294 (447)
T ss_dssp ---------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHH
T ss_pred -------------ccc---ccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcc
Confidence 000 000112345678899999999988888776666666655555554 4666543 378889
Q ss_pred HHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhh---cCchhHHHHHHHHHhhhhhhcchhHHHHHHh
Q 008514 404 SIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM---GWPGAMYVGTLLIGLGYGAHWAIVPAAASEL 480 (563)
Q Consensus 404 si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~---~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~ 480 (563)
.+.+.+|++++|+++||++|++... .......+..++.+++.. .......+...+.|++.++........+.|.
T Consensus 295 ~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 371 (447)
T d1pw4a_ 295 EYAGIPGTLLCGWMSDKVFRGNRGA---TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALEL 371 (447)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCHHH---HHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhhhhhcccccccc---ccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997754321 112222222222222222 1233455677788999999999999999999
Q ss_pred hccCcchhhhhhhhh-----chhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 008514 481 FGLKKFGALYNFLTL-----ANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYG 555 (563)
Q Consensus 481 FG~k~fg~nyg~~~~-----a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r~~~~~~~~ 555 (563)
++.++.|+..|+... +..+++.+.+...+ .-.|+..|.+..+++++++++...+..++||..+++.+
T Consensus 372 ~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 443 (447)
T d1pw4a_ 372 APKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD--------FFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQ 443 (447)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------SSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhChHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 999999999987643 23334544443220 01278899999999888888888877777766665544
Q ss_pred c
Q 008514 556 K 556 (563)
Q Consensus 556 ~ 556 (563)
+
T Consensus 444 e 444 (447)
T d1pw4a_ 444 E 444 (447)
T ss_dssp G
T ss_pred h
Confidence 4
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=9.5e-15 Score=146.82 Aligned_cols=137 Identities=12% Similarity=-0.019 Sum_probs=101.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHhhc-CchhHHHHHHHHHhhhhhhcchhHHHH
Q 008514 399 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAA 477 (563)
Q Consensus 399 ~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~~~~~~~lll~~~-~~~~l~~~~~l~Gl~~G~~~~l~p~i~ 477 (563)
..+...+...+++...|.+.||.++++ .+.+...+.+++.+++... ....+++..++.|+++|..+.....++
T Consensus 264 ~~~~~~~~~~~~~~~~~~l~~r~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 337 (417)
T d1pv7a_ 264 VTTMGELLNASIMFFAPLIINRIGGKN------ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHCHHH------HHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhhhhccccccc------chhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888999999999999987633 3344445555555555443 344677788889999999999999999
Q ss_pred HHhhccCcchhhhhhhh-----hchhhhhhhccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 008514 478 SELFGLKKFGALYNFLT-----LANPAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNV 549 (563)
Q Consensus 478 se~FG~k~fg~nyg~~~-----~a~~vg~~l~~~~~~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~R~r~~ 549 (563)
.|.+..|+-|+.+|+.+ ++..+||.+.+...+ .-.|+.+|++.+++++++.++.+++.+++|+.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~--------~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (417)
T d1pv7a_ 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE--------SIGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH--------HHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred HHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHCHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 99999999999988642 345566666554320 01289999999999988888888887776654
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=98.60 E-value=7.9e-08 Score=97.78 Aligned_cols=169 Identities=15% Similarity=0.171 Sum_probs=112.1
Q ss_pred HHHHHHHHHhhccchh---eeeechHHHHHHhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhcCCchhHHHHHHH
Q 008514 363 FWLIFFSLLLGSGSGL---TVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 437 (563)
Q Consensus 363 Fwll~~~~~~~~g~gl---~~i~n~~~i~~~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~ 437 (563)
-|.+++..+++..... ..++.+.|..++.|.++++. ..+++.++..++.+.+|+++||++||+. +....
T Consensus 23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~------~~~~~ 96 (447)
T d1pw4a_ 23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF------LPAGL 96 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH------HHHHH
Confidence 3555555555433332 23445556667788887754 7899999999999999999999988542 23334
Q ss_pred HHHHHHHHHHhh-----cCchhHHHHHHHHHhhhhhhcchhHHHHHHhhccCcchhhhhhhhhchhhhhhhcc----CCC
Q 008514 438 FVMAIGHIFLGM-----GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSIFTS----MPR 508 (563)
Q Consensus 438 ~~~~~~~lll~~-----~~~~~l~~~~~l~Gl~~G~~~~l~p~i~se~FG~k~fg~nyg~~~~a~~vg~~l~~----~~~ 508 (563)
.+.+++.++... .....+++.-.+.|++.|..+.....+++|+|..|+-|+..|+...+..+|..+.+ ...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 176 (447)
T d1pw4a_ 97 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 176 (447)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHh
Confidence 444444443322 23346777888999999999999999999999999999999987765555544433 111
Q ss_pred CCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHh
Q 008514 509 VDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVH 544 (563)
Q Consensus 509 ~~~~~~C~G~~cy~~~f~i~~~~~~~~~~l~l~l~~ 544 (563)
...+.++..|++...++++..++.+.+.+
T Consensus 177 -------~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 205 (447)
T d1pw4a_ 177 -------AWFNDWHAALYMPAFCAILVALFAFAMMR 205 (447)
T ss_dssp -------HHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred -------hhhhcccccchhhhhhHHHHHHHHHHhcc
Confidence 00123677777777766665555555443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=7.8e-06 Score=80.26 Aligned_cols=69 Identities=12% Similarity=0.040 Sum_probs=53.2
Q ss_pred HhhcHHHHHHHHHHHhhccchheeeechHHHHH-HhCCCchhH--HHHHHHHHHhhhhhhhhhhhhhhhhhc
Q 008514 357 ALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDY 425 (563)
Q Consensus 357 ~l~s~~Fwll~~~~~~~~g~gl~~i~n~~~i~~-~~g~~~~~~--~Vsl~si~n~~GRl~~G~lsD~~~~~~ 425 (563)
-+||++||.+.+.+++....--++..-+....+ +.|.++++. ..++..+...++.+.+|+++||++||+
T Consensus 3 ~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~ 74 (417)
T d1pv7a_ 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK 74 (417)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCT
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 479999999988877664443344444554444 579888764 789999999999999999999999854
|