Citrus Sinensis ID: 008538
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 562 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LXV3 | 557 | Dicarboxylate transporter | yes | no | 0.980 | 0.989 | 0.802 | 0.0 | |
| Q41364 | 569 | Dicarboxylate transporter | N/A | no | 0.992 | 0.980 | 0.773 | 0.0 | |
| O34726 | 478 | Putative malate transport | yes | no | 0.846 | 0.995 | 0.529 | 1e-141 | |
| Q9FMF7 | 563 | Dicarboxylate transporter | no | no | 0.832 | 0.831 | 0.537 | 1e-136 | |
| Q8L7Z9 | 564 | Dicarboxylate transporter | N/A | no | 0.939 | 0.936 | 0.487 | 1e-126 | |
| Q9FMF8 | 549 | Dicarboxylate transporter | no | no | 0.955 | 0.978 | 0.451 | 1e-121 | |
| P75763 | 477 | Inner membrane protein Yb | N/A | no | 0.822 | 0.968 | 0.349 | 1e-76 | |
| Q57048 | 479 | Uncharacterized transport | yes | no | 0.802 | 0.941 | 0.348 | 1e-72 | |
| Q8XBK4 | 487 | L-tartrate/succinate anti | N/A | no | 0.811 | 0.936 | 0.335 | 5e-64 | |
| Q3YXI0 | 487 | L-tartrate/succinate anti | yes | no | 0.811 | 0.936 | 0.335 | 5e-64 |
| >sp|Q9LXV3|DIT1_ARATH Dicarboxylate transporter 1, chloroplastic OS=Arabidopsis thaliana GN=DIT1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/568 (80%), Positives = 494/568 (86%), Gaps = 17/568 (2%)
Query: 1 MASLALTPSSCSLGLHSLTSRSLKLTPRSTSTRLH------SSNSNSNSLTQTNNLTFRN 54
MASLAL+ SCSL L SRSL L PR S+ L+ S +S + L ++ R
Sbjct: 1 MASLALS-GSCSLAF-PLKSRSLSL-PRPPSSSLNLTKPLRSLDSRFSLLKSPLPVSLRR 57
Query: 55 QYFLTNPSLKFKRLTVQASASAGAAVAPAPEQKPQQPWQGAALKPLIASIATGLILWFVP 114
+ ++ +K AS+S + PAP PWQGAA+KPL+ASIATGLILWFVP
Sbjct: 58 R---SSTLVKASSTVASASSSPTPPLVPAPV-----PWQGAAIKPLLASIATGLILWFVP 109
Query: 115 VPSGVSKNAWQLLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPI 174
VP GV++NAWQLLAIFLATIVGII QPLPLGAVAL+GLGASVLTKTLTF+AAFSAFGDPI
Sbjct: 110 VPEGVTRNAWQLLAIFLATIVGIITQPLPLGAVALMGLGASVLTKTLTFAAAFSAFGDPI 169
Query: 175 PWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARA 234
PWLIALAFFFARGFIKTGLGNR+AYQFV+LFGSSSLGLGYSLVFSEALLAPAIPSVSARA
Sbjct: 170 PWLIALAFFFARGFIKTGLGNRVAYQFVRLFGSSSLGLGYSLVFSEALLAPAIPSVSARA 229
Query: 235 GGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLT 294
GGIFLP+VKSLC+ACGSN GDGTEH+LGSWLMLTCFQTSVISSSMFLTAMAANPLSA L
Sbjct: 230 GGIFLPLVKSLCVACGSNVGDGTEHRLGSWLMLTCFQTSVISSSMFLTAMAANPLSANLA 289
Query: 295 LNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPM 354
NTI Q IGW DWAKAAIVPGLVSLIVVP LLY+IYPPTVKSSPDAPKLAQEKL+KMGPM
Sbjct: 290 FNTIKQTIGWTDWAKAAIVPGLVSLIVVPFLLYLIYPPTVKSSPDAPKLAQEKLDKMGPM 349
Query: 355 STNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLAESVAWDTL 414
S NE IMA TL LTVGLW+FG +L VD VTAAILGLS+LLVTGVVTWKECLAESVAWDTL
Sbjct: 350 SKNELIMAATLFLTVGLWIFGAKLGVDAVTAAILGLSVLLVTGVVTWKECLAESVAWDTL 409
Query: 415 TWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAA 474
TWFAALIAMAGYLNKYGLI WFSQTVVKFVGGLGLSWQLSFGIL+LLYFY+HYFFASGAA
Sbjct: 410 TWFAALIAMAGYLNKYGLIEWFSQTVVKFVGGLGLSWQLSFGILVLLYFYTHYFFASGAA 469
Query: 475 HIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWW 534
HIGAMFTAFLSV++ALG PPYF A+VLAF SNLMGGLTHYGIGSAP+FYGANYVPLAKWW
Sbjct: 470 HIGAMFTAFLSVSTALGTPPYFAALVLAFLSNLMGGLTHYGIGSAPIFYGANYVPLAKWW 529
Query: 535 GYGFIVSIVNIIIWLGVGGVWWKFIGLW 562
GYGF++SIVNI+IWLGVGG WWKFIGLW
Sbjct: 530 GYGFLISIVNILIWLGVGGAWWKFIGLW 557
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2-oxoglutarate/malate translocator involved with DIT2-1 in primary ammonia assimilation and in the re-assimilation of ammonia generated by the photorespiratory pathway. Imports 2-oxoglutarate into plastids as precursor for ammonia assimilation. 2-oxoglutarate is converted to glutamate, the end product of ammonia assimilation, which is exported to the cytosol by DIT2-1. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q41364|DIT1_SPIOL Dicarboxylate transporter 1, chloroplastic OS=Spinacia oleracea GN=DIT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/573 (77%), Positives = 498/573 (86%), Gaps = 15/573 (2%)
Query: 1 MASLALTPSSCSLGLHSLTSRSL-KLTPRSTSTRLHSSNSNSNSLTQTNNLTFRNQYFLT 59
MAS+AL+ +S +SL+ RSL L P S S S S ++ +++ +L+ +++FL+
Sbjct: 1 MASMALSLTSSPT--YSLSFRSLPSLKPLSKSQPSISLPSLRSNASKSPSLS--HKHFLS 56
Query: 60 NPSL----KFKRLTVQASASAGAAVAPAPEQKPQ------QPWQGAALKPLIASIATGLI 109
PSL K K ++ + + AP P P QPWQGA++KPL+ASI TG+I
Sbjct: 57 PPSLLLPHKLKPISASSPTNPPPPPAPVPSPAPVSAPAQVQPWQGASIKPLLASILTGVI 116
Query: 110 LWFVPVPSGVSKNAWQLLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSA 169
+WF+P P GVS+NAWQLLAIFL+TIVGII QPLPLGAVAL+GLGASVLTKTLTFSAAFSA
Sbjct: 117 IWFIPTPEGVSRNAWQLLAIFLSTIVGIITQPLPLGAVALMGLGASVLTKTLTFSAAFSA 176
Query: 170 FGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPS 229
FGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPS
Sbjct: 177 FGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPS 236
Query: 230 VSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPL 289
VSARAGGIFLP+VKSLC+ACGSN GDGTE KLG+WLMLTCFQTSVISSSMFLTAMAANPL
Sbjct: 237 VSARAGGIFLPLVKSLCIACGSNVGDGTERKLGAWLMLTCFQTSVISSSMFLTAMAANPL 296
Query: 290 SATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLE 349
SATLT NTI + IGWMDWAKAA VPGLVSLIVVPLLLY++YPP +KSSPDAP+LA+EKL+
Sbjct: 297 SATLTFNTIGKAIGWMDWAKAAFVPGLVSLIVVPLLLYVVYPPEIKSSPDAPRLAKEKLD 356
Query: 350 KMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLAESV 409
KMGPM+ NE IMA TLLLTVGLWVFGG+L VD VTAAILGLS+LL+TGVVTWKECLAESV
Sbjct: 357 KMGPMTKNESIMAVTLLLTVGLWVFGGKLGVDAVTAAILGLSVLLITGVVTWKECLAESV 416
Query: 410 AWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFF 469
AWDTLTWFAALIAMAGYLNKYGLITWFS+ VVK VGGLGLSWQ+SFG+L+LLYFYSHYFF
Sbjct: 417 AWDTLTWFAALIAMAGYLNKYGLITWFSENVVKVVGGLGLSWQMSFGVLVLLYFYSHYFF 476
Query: 470 ASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVP 529
ASGAAHIGAMFTAFLSVASALG PP+ A+VL+F SNLMGGLTHYGIGSAPVFYGANYVP
Sbjct: 477 ASGAAHIGAMFTAFLSVASALGTPPFLAAIVLSFLSNLMGGLTHYGIGSAPVFYGANYVP 536
Query: 530 LAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGLW 562
L +WWGYGF++SIVN+IIWLGVGG+WWK IGLW
Sbjct: 537 LPQWWGYGFLISIVNLIIWLGVGGLWWKAIGLW 569
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Transports carbon skeletons into chloroplasts for net glutamate synthesis. This translocator exchanges malate for internal succinate, fumarate and 2-oxoglutarate but not for aspartate and glutamate. Spinacia oleracea (taxid: 3562) |
| >sp|O34726|YFLS_BACSU Putative malate transporter YflS OS=Bacillus subtilis (strain 168) GN=yflS PE=2 SV=1 | Back alignment and function description |
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Score = 502 bits (1292), Expect = e-141, Method: Compositional matrix adjust.
Identities = 253/478 (52%), Positives = 342/478 (71%), Gaps = 2/478 (0%)
Query: 85 EQKPQQPWQGAALKPLIASIATGLILWFVPVPSGVSKNAWQLLAIFLATIVGIIAQPLPL 144
+K L PL+ ++A GLI+WF+P PSG+ AW L AIF+ATI+G I++PLP+
Sbjct: 3 SEKDAGKQSAVKLVPLLITVAVGLIIWFIPAPSGLEPKAWHLFAIFVATIIGFISKPLPM 62
Query: 145 GAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKL 204
GA+A+ L + LT TL+ S FG+ WLI +AFF +RGFIKTGLG RI+Y FV+
Sbjct: 63 GAIAIFALAVTALTGTLSIEDTLSGFGNKTIWLIVIAFFISRGFIKTGLGARISYVFVQK 122
Query: 205 FGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSW 264
FG +LGL YSL+FS+ +L+PAIPS +ARAGGI PI++SL GS+ +GTE K+G++
Sbjct: 123 FGKKTLGLSYSLLFSDLILSPAIPSNTARAGGIIFPIIRSLSETFGSSPANGTERKIGAF 182
Query: 265 LMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPL 324
L+ T FQ ++I+S+MFLTAMAANPL A L + + W WA AAIVPGLVSLI+ PL
Sbjct: 183 LLKTGFQGNLITSAMFLTAMAANPLIAKLAHDVAGVDLTWTSWAIAAIVPGLVSLIITPL 242
Query: 325 LLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVT 384
++Y +YPP +K +PDA K+A EKL++MGP +E M LL + LW+FGG N+D T
Sbjct: 243 VIYKLYPPEIKETPDAAKIATEKLKEMGPFKKSELSMVIVFLLVLVLWIFGGSFNIDATT 302
Query: 385 AAILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFV 444
A++GL++LL++ V+TW + E AWDTLTWFAAL+ +A +LN+ G+++WFS + V
Sbjct: 303 TALIGLAVLLLSQVLTWDDIKKEQGAWDTLTWFAALVMLANFLNELGMVSWFSNAMKSSV 362
Query: 445 GGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFF 504
G SW ++F ILI++Y+YSHYFFAS AHI AM++AFL+V A G PP A+ LAF
Sbjct: 363 S--GFSWIVAFIILIVVYYYSHYFFASATAHISAMYSAFLAVVVAAGAPPLLAALSLAFI 420
Query: 505 SNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGLW 562
SNL G THYG G+APVF+GA Y+P KWW GFI+SIV+II+WL +GG+WWK +G+W
Sbjct: 421 SNLFGSTTHYGSGAAPVFFGAGYIPQGKWWSIGFILSIVHIIVWLVIGGLWWKVLGIW 478
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Might be a malate transporter. Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q9FMF7|DIT21_ARATH Dicarboxylate transporter 2.1, chloroplastic OS=Arabidopsis thaliana GN=DIT2-1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 486 bits (1252), Expect = e-136, Method: Compositional matrix adjust.
Identities = 255/474 (53%), Positives = 330/474 (69%), Gaps = 6/474 (1%)
Query: 93 QGAALKPLIASIATGLILWF-VPVPSGVSKNAWQLLAIFLATIVGIIAQPLPLGAVALLG 151
QGA L PLI SI+ GLIL F VPVP GV+ WQLL+IFL+TI G++ PLP+GA A +G
Sbjct: 92 QGAKLIPLILSISVGLILRFAVPVPEGVTPQGWQLLSIFLSTIAGLVLSPLPVGAWAFIG 151
Query: 152 LGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLG 211
L AS++TKTL+FSAAFSAF + WLI ++FFFARGF+KTGLG+RIA FVK G S+LG
Sbjct: 152 LTASIVTKTLSFSAAFSAFTSEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLG 211
Query: 212 LGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQ 271
L Y L SEAL+APA+PS +ARAGGIFLPI+KSL L+ GS D + KLGS+L+ + FQ
Sbjct: 212 LSYGLTLSEALIAPAMPSTTARAGGIFLPIIKSLSLSAGSKPNDSSSRKLGSYLIQSQFQ 271
Query: 272 TSVISSSMFLTAMAANPLSATLTLN---TINQPIGWMDWAKAAIVPGLVSLIVVPLLLYI 328
+ SS++FLTA A N L L I+ P W+ W KAA +P ++SL+ PL+LY
Sbjct: 272 CAGNSSALFLTAAAQNLLCLKLAEELGVVISNP--WVSWFKAASLPAIISLLCTPLILYK 329
Query: 329 IYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAIL 388
+YPP K +P+AP +A KL++MGP++ NE IM GT+LL V LW+ G L + V AA++
Sbjct: 330 LYPPETKDTPEAPGIAATKLKQMGPVTKNEWIMVGTMLLAVTLWICGETLGIPSVVAAMI 389
Query: 389 GLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLG 448
GLSILLV GV+ W +CL+E AWDTL WFA L+ MAG L G++TW S V K + L
Sbjct: 390 GLSILLVLGVLNWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGVVTWMSDCVAKVLQSLS 449
Query: 449 LSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLM 508
LSW +FG+L YF+ HY FAS H+GA+F+AFL++ A G P A+ LA+ +NL
Sbjct: 450 LSWPAAFGLLQAAYFFIHYLFASQTGHVGALFSAFLAMHIAAGVPGILAALALAYNTNLF 509
Query: 509 GGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGLW 562
G LTHY G A V+YGA YV L + GF+++ +N IIW VG WWKF+GL+
Sbjct: 510 GALTHYSSGQAAVYYGAGYVDLPDVFKIGFVMATINAIIWGVVGTFWWKFLGLY 563
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Glutamate/malate translocator involved with DIT1 in primary ammonia assimilation and in the re-assimilation of ammonia generated by the photorespiratory pathway. Exports the end product of ammonia assimilation, glutamate, from plastids to the cytosol. The precursor for ammonia assimilation, 2-oxoglutarate, is imported from the cytosol by DIT1. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L7Z9|DIT2_SPIOL Dicarboxylate transporter 2, chloroplastic OS=Spinacia oleracea GN=DIT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 452 bits (1163), Expect = e-126, Method: Compositional matrix adjust.
Identities = 266/546 (48%), Positives = 356/546 (65%), Gaps = 18/546 (3%)
Query: 28 RSTSTRLHSSNSN---SNSLTQTNNLTFRNQYFLT----NPSLKFKRLTVQASASAGAAV 80
RS++T LH + S S T LTF + P L K L AS+S+ A
Sbjct: 26 RSSTTSLHHRRPHLSLSLSSTPKPTLTFSSHSHSHSLSSKPLLALKPLNATASSSSSPAT 85
Query: 81 APAPEQKPQQPWQGAALKPLIASIATGLILWF-VPVPSGVSKNAWQLLAIFLATIVGIIA 139
P K GA L PLI S++ GL+L F VP P+ ++ AWQLLAIFL+T+ G++
Sbjct: 86 TSPPPTK-----SGAKLIPLILSVSVGLLLRFAVPKPAELTPQAWQLLAIFLSTVAGLVL 140
Query: 140 QPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAY 199
PLP+GA A LG+ ASV+TKTL F AF AF + + WLI ++FFFARGF+KTGLG+RIA
Sbjct: 141 SPLPVGAWAFLGVTASVVTKTLPFPTAFCAFTNEVIWLIVISFFFARGFVKTGLGDRIAT 200
Query: 200 QFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEH 259
FVK G S+LGL Y L SEAL+APA+PS +ARAGGIFLPI+KSL ++ GS G +
Sbjct: 201 YFVKWLGKSTLGLSYGLTISEALVAPAMPSTTARAGGIFLPIIKSLSISSGSLPGGESRK 260
Query: 260 KLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLN---TINQPIGWMDWAKAAIVPGL 316
KLG++L++T FQ++ SS++FLTA A N L L I P W+ W KAA +P
Sbjct: 261 KLGTYLIMTQFQSAGNSSALFLTAAAQNLLCLKLAEELGVKIASP--WVFWLKAASLPAF 318
Query: 317 VSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGG 376
V+L++ PL+LY +YPP +K +P+AP LA EKL+ MGP++ NE +M GT+LL V LWVFG
Sbjct: 319 VALLLTPLILYKLYPPELKDTPEAPALAAEKLKNMGPVTKNEWVMVGTMLLAVSLWVFGE 378
Query: 377 RLNVDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWF 436
++ V V AA+LGLS+LL+ GV+ W +CL E AWDTL WFA L+ MA L G+++W
Sbjct: 379 KIGVSSVVAAMLGLSVLLLLGVLDWNDCLNEKSAWDTLAWFAVLVGMASQLTNLGIVSWM 438
Query: 437 SQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYF 496
S V + + + LSW +FGIL YF+ HY FAS H+GA+++AFL++ A G P
Sbjct: 439 SGCVARSLKTMNLSWPAAFGILQAAYFFVHYLFASQTGHVGALYSAFLAMNIASGVPGVL 498
Query: 497 VAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWW 556
A+ LA+ +NL G LTHY G A V+YGA YV L + GFI++++N IW VGGVWW
Sbjct: 499 AALALAYNTNLFGALTHYSSGQAAVYYGAGYVDLPDVFKMGFIMAVINATIWTVVGGVWW 558
Query: 557 KFIGLW 562
K +G++
Sbjct: 559 KILGIY 564
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Glutamate/malate translocator involved with DIT1 in primary ammonia assimilation and in the re-assimilation of ammonia generated by the photorespiratory pathway. Exports the end product of ammonia assimilation, glutamate, from plastids to the cytosol. The precursor for ammonia assimilation, 2-oxoglutarate, is imported from the cytosol by DIT1. Spinacia oleracea (taxid: 3562) |
| >sp|Q9FMF8|DIT22_ARATH Dicarboxylate transporter 2.2, chloroplastic OS=Arabidopsis thaliana GN=DIT2-2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust.
Identities = 253/560 (45%), Positives = 347/560 (61%), Gaps = 23/560 (4%)
Query: 15 LHSLTSRSLKLTPRSTSTRLHSSNSNSNSLTQTNNLTFRNQYFLTNPSLKFKRLTVQASA 74
+ SL RS+ L+ S LH S+S S +L + ++ L + S+ R T++A+A
Sbjct: 1 MESLALRSISLSASYLS--LHRSSSKSFALLPPS-ISVHTSPTLRSLSISSPRFTLRATA 57
Query: 75 SAGAAVAPAPEQKPQQPWQ--------GAALKPLIASIATGLILWF-VPVPSGVSKNAWQ 125
S+ PE++ + GA L PL S++ GLI+ F +P P V+ WQ
Sbjct: 58 SS------LPEEQNKPQPPPPSPPQPQGAKLIPLAISVSIGLIVRFLIPRPEQVTSQGWQ 111
Query: 126 LLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFA 185
LL+IFL TI G++ PLP+GA A +GL AS++TKTL FS AF+AF + + WLIA++FFFA
Sbjct: 112 LLSIFLFTISGLVLGPLPVGAWAFIGLTASIVTKTLPFSTAFAAFTNELIWLIAISFFFA 171
Query: 186 RGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSL 245
RGFIKTGLG+RIA FVK G S+LGL Y L F E L+ +PS ARAGG+FLP++KSL
Sbjct: 172 RGFIKTGLGDRIATYFVKWLGKSTLGLSYGLAFCETLMGLIMPSTMARAGGVFLPVIKSL 231
Query: 246 CLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNT---INQPI 302
++ GS GD + KLGS+L+ T Q S S ++ LT+ A N L L I+ P
Sbjct: 232 AISAGSYPGDPSSRKLGSFLIQTQLQCSGASGAILLTSAAQNLLCLKLAREVGVVISNP- 290
Query: 303 GWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMA 362
W+ W K A VP VSL+ PL++Y +YPP +K +P+AP A +KLE++GP++ NE IM
Sbjct: 291 -WITWFKVASVPAFVSLLCTPLIIYKLYPPELKHTPEAPAAAAKKLERLGPITKNEWIML 349
Query: 363 GTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIA 422
G + TV LWVFG + + V +A++GLS LL+ GV+ W +CL++ AWD+LTWFA LI
Sbjct: 350 GAMAFTVSLWVFGEAIGIASVVSAMIGLSTLLLLGVINWDDCLSDKSAWDSLTWFAVLIG 409
Query: 423 MAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTA 482
MAG L G++ W S V K + L L+W SF IL Y HY FAS H GA++
Sbjct: 410 MAGQLTNLGVVAWMSDCVAKLLQSLSLTWPASFIILQACYLLIHYLFASQTGHAGALYPP 469
Query: 483 FLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSI 542
FL++ A G P A+ LAF +NL G L HY G A ++YGA YV L + GF++++
Sbjct: 470 FLAMQIAAGVPGVLAALCLAFNNNLSGALAHYSGGPAALYYGAGYVDLRDMFRVGFVMAL 529
Query: 543 VNIIIWLGVGGVWWKFIGLW 562
V IIW GVG WWKF+GL+
Sbjct: 530 VQAIIWGGVGSFWWKFLGLY 549
|
May be involved in the transport of dicarboxylate compounds. Arabidopsis thaliana (taxid: 3702) |
| >sp|P75763|YBHI_ECOLI Inner membrane protein YbhI OS=Escherichia coli (strain K12) GN=ybhI PE=1 SV=1 | Back alignment and function description |
|---|
Score = 288 bits (736), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 166/475 (34%), Positives = 269/475 (56%), Gaps = 13/475 (2%)
Query: 96 ALKPLIASIATGLILWFVPVPSGVSKNAWQLLAIFLATIVGIIAQPLPLGAVALLGLGAS 155
+L LI +A I+ F+P P+G+S+ AW L I+LA IVG++ +P P V L+ + AS
Sbjct: 5 SLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAAS 64
Query: 156 VLT------KTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSS 209
++ +A S + WL+ AF + F+ TGLG RIAY + G+++
Sbjct: 65 MVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGNTT 124
Query: 210 LGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTC 269
LGLGY VF + +LAPA PS +ARAGGI LPI+ S+ +A GS + + ++G +LM++
Sbjct: 125 LGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEP-EKSPRRVGHYLMMSI 183
Query: 270 FQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYII 329
+ + +S MF TAMA N L+ + + ++ I W WA AA +PG++ L+V PL++Y +
Sbjct: 184 YMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVIYTM 243
Query: 330 YPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILG 389
YPP +K D +A+ L ++GPM EK++ G +L + W+F L VD T AI+
Sbjct: 244 YPPEIKKV-DNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVV 302
Query: 390 LSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGL 449
++ +L+ G+VTW++ + W+TL W+ +I ++ L+K W ++ F L
Sbjct: 303 MATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEV---FKNNLAF 359
Query: 450 SWQ--LSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNL 507
++F ++I L YFFASG+A+I AM F +A+ G P A+ L F ++
Sbjct: 360 DGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSY 419
Query: 508 MGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGLW 562
G +THYG + PV +G Y + WW G +++I+ ++ + +G WW + W
Sbjct: 420 GGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGW 474
|
Escherichia coli (strain K12) (taxid: 83333) |
| >sp|Q57048|Y020_HAEIN Uncharacterized transporter HI_0020 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0020 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 274 bits (701), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 165/474 (34%), Positives = 263/474 (55%), Gaps = 23/474 (4%)
Query: 100 LIASIATGLILWFVPVPSGVSKNAWQLLAIFLATIVGIIAQP-----LPLGAVALLGL-- 152
L+ +A LI + +P P G+S AW+LL +++ATIVG++ +P + L A+A+ G+
Sbjct: 9 LVILMAIPLITFLLPAPDGLSLIAWRLLGVYIATIVGLVLKPYGEPVILLAAIAVSGVII 68
Query: 153 ----GASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSS 208
GA L K + WLI AF + F+ TGLG RIAY + GS+
Sbjct: 69 GNTEGAKELVKV---GNMLDGYKSGTTWLIFTAFTLSSAFVITGLGKRIAYHMIGAMGST 125
Query: 209 SLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLT 268
+L LGY +F + LL+PA PS +AR+GGI PI+ S+ +A GS+ + + K G +LM+
Sbjct: 126 TLRLGYVTMFLDLLLSPATPSNTARSGGIIFPIINSVVVALGSDP-EKSPKKAGRYLMMN 184
Query: 269 CFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYI 328
+ +S +FLTAMA N L+ +L + W+ W AA VPGL+ L ++PL+ Y
Sbjct: 185 VYMVVKTTSYIFLTAMAPNALALSLMAPILGFETTWIKWFLAASVPGLLCLFLIPLICYW 244
Query: 329 IYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAIL 388
+ PP +K D +A++ LE++GPMS EK ++ ++ + W+F L+++ AI+
Sbjct: 245 VSPPELKKV-DNKAIAKKGLEELGPMSFREKALSVLFVIALFGWIFSNSLHINATIVAII 303
Query: 389 GLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQT---VVKFVG 445
+ + +V +VTW + L AW+TL W+ +I M+G L K G W + T +++F G
Sbjct: 304 VMVLCIVLSIVTWDDILKSKGAWNTLVWYGGIIGMSGLLEKSGFFKWLANTLSTILQFEG 363
Query: 446 GLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFS 505
++ +++ L Y FASG A++ AM F +V G P +A+ L F +
Sbjct: 364 ----HGMMALIVILTLSVSVRYLFASGGAYVAAMVPVFATVGHVTGAPTELLALGLVFAN 419
Query: 506 NLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFI 559
+ G +THYG G P+ +GA Y + WW G I++ ++II L +G WWK +
Sbjct: 420 SYGGSVTHYGGGPGPIAFGAGYNDIKSWWITGAIIAFGSLIIHLTIGMAWWKLL 473
|
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421) |
| >sp|Q8XBK4|TTDT_ECO57 L-tartrate/succinate antiporter OS=Escherichia coli O157:H7 GN=ttdT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (627), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 166/495 (33%), Positives = 266/495 (53%), Gaps = 39/495 (7%)
Query: 86 QKPQQPWQGAALKPLIASIATGLILWFVPVPSGVSKNAWQLLAIFLATIVGIIAQPLPLG 145
KP W +A +A I+ +PVP+G+ + W A+F IVG+I +P+P
Sbjct: 1 MKPSTEWWR-----YLAPLAVIAIIALIPVPAGLESHTWLYFAVFTGVIVGLILEPVPGA 55
Query: 146 AVALLGLGA-SVLTKTLTFSA-----------------AFSAFGDPIPWLIALAFFFARG 187
VA++G+ ++L+ L FS A S F + + WLI AF F G
Sbjct: 56 VVAMVGISIIAILSPWLLFSPEQLAQPGFKFTAKSLSWAVSGFSNSVIWLIFAAFMFGTG 115
Query: 188 FIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCL 247
+ KTGLG RIA VK G +L LGY+++FSE +LAP PS SAR GI PI+++L
Sbjct: 116 YEKTGLGRRIALILVKKMGHRTLFLGYAVMFSELILAPVTPSNSARGAGIIYPIIRNLPP 175
Query: 248 ACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDW 307
S D + +GS++M ++S++FLTAMA N L L + + + W DW
Sbjct: 176 LYQSQPNDSSSRSIGSYIMWMGIVADCVTSAIFLTAMAPNLLLIGLMKSASHATLSWGDW 235
Query: 308 AKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLL 367
+ ++ +++VP L Y++YPP +KS P+ A+ +L+ MGP+ + EK M G ++
Sbjct: 236 FLGMLPLSILLVLLVPWLAYVLYPPVLKSGDQVPRWAETELQAMGPLCSREKRMLGLMVG 295
Query: 368 TVGLWVFGGRLNVDPVTAAILGLSI---LLVTGVVTWKECLAESVAWDTLTWFAALIAMA 424
+ LW+FGG D + AA++G S+ +L+ +++W + ++ AW+ W A+LI +A
Sbjct: 296 ALVLWIFGG----DYIDAAMVGYSVVALMLLLRIISWDDIVSNKAAWNVFFWLASLITLA 351
Query: 425 GYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFL 484
LN G I+WF + + + G S + LI++++ YFFAS A+ A+ A +
Sbjct: 352 TGLNNTGFISWFGKLLAGSLS--GYSPTMVMVALIVVFYLLRYFFASATAYTSAL--APM 407
Query: 485 SVASALGCP----PYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIV 540
+A+AL P P F MV A L LT Y G +P++YG+ Y+P A +W G I
Sbjct: 408 MIAAALAMPEIPLPVFCLMVGAAI-GLGSILTPYATGPSPIYYGSGYLPTADYWRLGAIF 466
Query: 541 SIVNIIIWLGVGGVW 555
++ +++ + G +W
Sbjct: 467 GLIFLVLLVITGLLW 481
|
Catalyzes the uptake of tartrate in exchange for intracellular succinate. Essential for anaerobic L-tartrate fermentation. Escherichia coli O157:H7 (taxid: 83334) |
| >sp|Q3YXI0|TTDT_SHISS L-tartrate/succinate antiporter OS=Shigella sonnei (strain Ss046) GN=ttdT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 245 bits (626), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 166/495 (33%), Positives = 266/495 (53%), Gaps = 39/495 (7%)
Query: 86 QKPQQPWQGAALKPLIASIATGLILWFVPVPSGVSKNAWQLLAIFLATIVGIIAQPLPLG 145
KP W +A +A I+ +PVP+G+ + W A+F IVG+I +P+P
Sbjct: 1 MKPSTEWWR-----YLAPLAVIAIIALIPVPAGLESHTWLYFAVFTGVIVGLILEPVPGA 55
Query: 146 AVALLGLGA-SVLTKTLTFSA-----------------AFSAFGDPIPWLIALAFFFARG 187
VA++G+ ++L+ L FS A S F + + WLI AF F G
Sbjct: 56 VVAMVGISIIAILSPWLLFSPEQLAQPGFKFTAKSLSWAVSGFSNSVIWLIFAAFMFGTG 115
Query: 188 FIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCL 247
+ KTGLG RIA VK G +L LGY+++FSE +LAP PS SAR GI PI+++L
Sbjct: 116 YEKTGLGRRIALILVKKMGHRTLFLGYAVMFSELILAPVTPSNSARGAGIIYPIIRNLPP 175
Query: 248 ACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDW 307
S D + +GS++M ++S++FLTAMA N L L + + + W DW
Sbjct: 176 LYQSQPNDSSSRSIGSYIMWMGIVADCVTSAIFLTAMAPNLLLIGLMKSASHATLSWGDW 235
Query: 308 AKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLL 367
+ ++ +++VP L Y++YPP +KS P+ A+ +L+ MGP+ + EK M G ++
Sbjct: 236 FLGMLPLSILLVLLVPWLAYVLYPPVLKSGDQVPRWAETELQAMGPLCSREKRMLGLIVG 295
Query: 368 TVGLWVFGGRLNVDPVTAAILGLSI---LLVTGVVTWKECLAESVAWDTLTWFAALIAMA 424
+ LW+FGG D + AA++G S+ +L+ +++W + ++ AW+ W A+LI +A
Sbjct: 296 ALVLWIFGG----DYIDAAMVGYSVVALMLLLRIISWDDIVSNKAAWNVFFWLASLITLA 351
Query: 425 GYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFL 484
LN G I+WF + + + G S + LI++++ YFFAS A+ A+ A +
Sbjct: 352 TGLNNTGFISWFGKLLAGSLS--GYSPTMVMVALIVVFYLLRYFFASATAYTSAL--APM 407
Query: 485 SVASALGCP----PYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIV 540
+A+AL P P F MV A L LT Y G +P++YG+ Y+P A +W G I
Sbjct: 408 MIAAALAMPEIPLPVFCLMVGAAI-GLGSILTPYATGPSPIYYGSGYLPTADYWRLGAIF 466
Query: 541 SIVNIIIWLGVGGVW 555
++ +++ + G +W
Sbjct: 467 GLIFLVLLVITGLLW 481
|
Catalyzes the uptake of tartrate in exchange for intracellular succinate. Essential for anaerobic L-tartrate fermentation. Shigella sonnei (strain Ss046) (taxid: 300269) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 562 | ||||||
| 255544892 | 561 | 2-oxoglutarate/malate translocator, chlo | 0.991 | 0.992 | 0.809 | 0.0 | |
| 356538956 | 560 | PREDICTED: 2-oxoglutarate/malate translo | 0.983 | 0.987 | 0.796 | 0.0 | |
| 30684152 | 557 | dicarboxylate transporter 1 [Arabidopsis | 0.980 | 0.989 | 0.802 | 0.0 | |
| 356542068 | 553 | PREDICTED: 2-oxoglutarate/malate translo | 0.982 | 0.998 | 0.786 | 0.0 | |
| 186522448 | 556 | dicarboxylate transporter 1 [Arabidopsis | 0.978 | 0.989 | 0.802 | 0.0 | |
| 225435448 | 559 | PREDICTED: 2-oxoglutarate/malate translo | 0.994 | 1.0 | 0.797 | 0.0 | |
| 297811397 | 554 | hypothetical protein ARALYDRAFT_909232 [ | 0.985 | 1.0 | 0.814 | 0.0 | |
| 224104143 | 466 | 2-oxoglutarate/malate translocator [Popu | 0.829 | 1.0 | 0.927 | 0.0 | |
| 312281721 | 555 | unnamed protein product [Thellungiella h | 0.978 | 0.990 | 0.800 | 0.0 | |
| 224059566 | 466 | 2-oxoglutarate/malate translocator [Popu | 0.829 | 1.0 | 0.914 | 0.0 |
| >gi|255544892|ref|XP_002513507.1| 2-oxoglutarate/malate translocator, chloroplast precursor, putative [Ricinus communis] gi|223547415|gb|EEF48910.1| 2-oxoglutarate/malate translocator, chloroplast precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/566 (80%), Positives = 499/566 (88%), Gaps = 9/566 (1%)
Query: 1 MASLALTPSSCSLGLHSLTSRSLKLTPRSTSTRLHSSNSNSNSLTQTNNLTFRNQYFLTN 60
MASLALT SCSL +SL S + R ST + + + L+ + F + +N
Sbjct: 1 MASLALT--SCSLSFNSLPSLKSRSLSRLRSTPVPNRFPSLPKLSSASTSPFLPKLAKSN 58
Query: 61 PSL----KFKRLTVQASASAGAAVAPAPEQKPQQPWQGAALKPLIASIATGLILWFVPVP 116
P++ + TV++S SA A + P QPWQGA++KPL+ASIATG+I+WFVPVP
Sbjct: 59 PTIFPKQRNSNFTVKSSTSAAPAAS---APAPSQPWQGASIKPLLASIATGVIIWFVPVP 115
Query: 117 SGVSKNAWQLLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPW 176
+GV+K AWQLLAIFLATIVGII QPLPLGAVAL+GLGASVLTKTLTFSAAFSAFGDPIPW
Sbjct: 116 TGVTKPAWQLLAIFLATIVGIITQPLPLGAVALMGLGASVLTKTLTFSAAFSAFGDPIPW 175
Query: 177 LIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGG 236
LIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGG
Sbjct: 176 LIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGG 235
Query: 237 IFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLN 296
IFLP+VKSLC+ACGSN GDGTEHKLGSWLMLTCFQTSVISS+MFLTAMAANPLSA LT N
Sbjct: 236 IFLPLVKSLCVACGSNAGDGTEHKLGSWLMLTCFQTSVISSAMFLTAMAANPLSANLTFN 295
Query: 297 TINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMST 356
TI Q +GW DWAKAAIVPGL SLI+VPLLLYIIYPPTVKSSPDAPKLA+EKLEKMGPM+
Sbjct: 296 TIKQTLGWTDWAKAAIVPGLASLIIVPLLLYIIYPPTVKSSPDAPKLAREKLEKMGPMTK 355
Query: 357 NEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLTW 416
NE IM GTLLLTVGLW+FGG LNVD VTAAILGLS+LL+TGVVTWKECLAE+VAWDTLTW
Sbjct: 356 NEIIMTGTLLLTVGLWIFGGMLNVDAVTAAILGLSVLLITGVVTWKECLAEAVAWDTLTW 415
Query: 417 FAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHI 476
FAALIAMAGYLNKYGLI+WFSQTVVKFVGGLGLSWQLSFGIL+LLYFYSHYFFASGAAHI
Sbjct: 416 FAALIAMAGYLNKYGLISWFSQTVVKFVGGLGLSWQLSFGILVLLYFYSHYFFASGAAHI 475
Query: 477 GAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGY 536
GAMFTAFLSVASALG PPYF AMVLAF SNLMGGLTHYGIGSAPVFYGANYVPLA+WWGY
Sbjct: 476 GAMFTAFLSVASALGTPPYFGAMVLAFLSNLMGGLTHYGIGSAPVFYGANYVPLAQWWGY 535
Query: 537 GFIVSIVNIIIWLGVGGVWWKFIGLW 562
GF++S+VNIIIWLG+GGVWWKFIGLW
Sbjct: 536 GFLISVVNIIIWLGIGGVWWKFIGLW 561
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538956|ref|XP_003537966.1| PREDICTED: 2-oxoglutarate/malate translocator, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 874 bits (2258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/569 (79%), Positives = 501/569 (88%), Gaps = 16/569 (2%)
Query: 1 MASLALTPSSCS-LGLHSLTSRSLKLTPRSTSTRLHSSNSNSNSLTQTNNLTFRN--QYF 57
MAS+ALT ++ L L T+ +LK HSS S S SL T N + + +
Sbjct: 1 MASVALTTTALPYLRLRRNTAATLK-------PNRHSSISLS-SLKPTLNASISSFPNFS 52
Query: 58 LTNPSLKFKR----LTVQASASAGAAVAPAPEQKPQQPWQGAALKPLIASIATGLILWFV 113
L PSL F + LTV+ASA A APAP P QPWQGA++KPLIASIATG+ILWF
Sbjct: 53 LKKPSLVFNQKPSSLTVRASA-ASITPAPAPSSAPVQPWQGASIKPLIASIATGVILWFS 111
Query: 114 PVPSGVSKNAWQLLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDP 173
PVP+GV++NAWQLLAIFL TIVGII QPLPLGAVA+LGLG SVLTKTL F+AAFS FGDP
Sbjct: 112 PVPAGVNRNAWQLLAIFLGTIVGIITQPLPLGAVAILGLGVSVLTKTLPFAAAFSGFGDP 171
Query: 174 IPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSAR 233
IPWLIALAFFFA+GFIKTGLGNR+AYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSAR
Sbjct: 172 IPWLIALAFFFAKGFIKTGLGNRVAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSAR 231
Query: 234 AGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATL 293
AGGIFLP+VK+LC+ACGSN GDGTEH+LG+WLMLTCFQTSVI+S+MFLTAMAANPL ATL
Sbjct: 232 AGGIFLPLVKALCVACGSNAGDGTEHRLGAWLMLTCFQTSVITSAMFLTAMAANPLCATL 291
Query: 294 TLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGP 353
TLN+INQ IGW+DWAKAAIVPGL SL++VPL+LY+IYPPT+KSSPDAPKLA+EKLEKMGP
Sbjct: 292 TLNSINQTIGWLDWAKAAIVPGLASLVLVPLILYVIYPPTLKSSPDAPKLAKEKLEKMGP 351
Query: 354 MSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLAESVAWDT 413
M+TNEKIM TL LTVGLWVFGG LNVD V+AAILGLS+LLVTGVVTWKECLAE VAWDT
Sbjct: 352 MTTNEKIMTATLFLTVGLWVFGGLLNVDAVSAAILGLSVLLVTGVVTWKECLAEGVAWDT 411
Query: 414 LTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGA 473
LTWFAALIAMAGYLNKYGLI+WFSQTVVKFVGGLGLSWQLSFGIL+LLYFYSHYFFASGA
Sbjct: 412 LTWFAALIAMAGYLNKYGLISWFSQTVVKFVGGLGLSWQLSFGILVLLYFYSHYFFASGA 471
Query: 474 AHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKW 533
AHIGAMFTAFLSVA+ALG PP+F A+VL+F SNLMGGLTHYGIGSAPVF+GANYVPLAKW
Sbjct: 472 AHIGAMFTAFLSVATALGTPPFFGAIVLSFLSNLMGGLTHYGIGSAPVFFGANYVPLAKW 531
Query: 534 WGYGFIVSIVNIIIWLGVGGVWWKFIGLW 562
WGYGF++SIVNIIIWLG+GGVWWKFIGLW
Sbjct: 532 WGYGFLISIVNIIIWLGLGGVWWKFIGLW 560
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30684152|ref|NP_568283.2| dicarboxylate transporter 1 [Arabidopsis thaliana] gi|75180949|sp|Q9LXV3.1|DIT1_ARATH RecName: Full=Dicarboxylate transporter 1, chloroplastic; AltName: Full=2-oxoglutarate/malate translocator 1; Short=AtpOMT1; Flags: Precursor gi|7630042|emb|CAB88250.1| 2-oxoglutarate/malate translocator precursor-like protein [Arabidopsis thaliana] gi|332004439|gb|AED91822.1| dicarboxylate transporter 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/568 (80%), Positives = 494/568 (86%), Gaps = 17/568 (2%)
Query: 1 MASLALTPSSCSLGLHSLTSRSLKLTPRSTSTRLH------SSNSNSNSLTQTNNLTFRN 54
MASLAL+ SCSL L SRSL L PR S+ L+ S +S + L ++ R
Sbjct: 1 MASLALS-GSCSLAF-PLKSRSLSL-PRPPSSSLNLTKPLRSLDSRFSLLKSPLPVSLRR 57
Query: 55 QYFLTNPSLKFKRLTVQASASAGAAVAPAPEQKPQQPWQGAALKPLIASIATGLILWFVP 114
+ ++ +K AS+S + PAP PWQGAA+KPL+ASIATGLILWFVP
Sbjct: 58 R---SSTLVKASSTVASASSSPTPPLVPAPV-----PWQGAAIKPLLASIATGLILWFVP 109
Query: 115 VPSGVSKNAWQLLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPI 174
VP GV++NAWQLLAIFLATIVGII QPLPLGAVAL+GLGASVLTKTLTF+AAFSAFGDPI
Sbjct: 110 VPEGVTRNAWQLLAIFLATIVGIITQPLPLGAVALMGLGASVLTKTLTFAAAFSAFGDPI 169
Query: 175 PWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARA 234
PWLIALAFFFARGFIKTGLGNR+AYQFV+LFGSSSLGLGYSLVFSEALLAPAIPSVSARA
Sbjct: 170 PWLIALAFFFARGFIKTGLGNRVAYQFVRLFGSSSLGLGYSLVFSEALLAPAIPSVSARA 229
Query: 235 GGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLT 294
GGIFLP+VKSLC+ACGSN GDGTEH+LGSWLMLTCFQTSVISSSMFLTAMAANPLSA L
Sbjct: 230 GGIFLPLVKSLCVACGSNVGDGTEHRLGSWLMLTCFQTSVISSSMFLTAMAANPLSANLA 289
Query: 295 LNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPM 354
NTI Q IGW DWAKAAIVPGLVSLIVVP LLY+IYPPTVKSSPDAPKLAQEKL+KMGPM
Sbjct: 290 FNTIKQTIGWTDWAKAAIVPGLVSLIVVPFLLYLIYPPTVKSSPDAPKLAQEKLDKMGPM 349
Query: 355 STNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLAESVAWDTL 414
S NE IMA TL LTVGLW+FG +L VD VTAAILGLS+LLVTGVVTWKECLAESVAWDTL
Sbjct: 350 SKNELIMAATLFLTVGLWIFGAKLGVDAVTAAILGLSVLLVTGVVTWKECLAESVAWDTL 409
Query: 415 TWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAA 474
TWFAALIAMAGYLNKYGLI WFSQTVVKFVGGLGLSWQLSFGIL+LLYFY+HYFFASGAA
Sbjct: 410 TWFAALIAMAGYLNKYGLIEWFSQTVVKFVGGLGLSWQLSFGILVLLYFYTHYFFASGAA 469
Query: 475 HIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWW 534
HIGAMFTAFLSV++ALG PPYF A+VLAF SNLMGGLTHYGIGSAP+FYGANYVPLAKWW
Sbjct: 470 HIGAMFTAFLSVSTALGTPPYFAALVLAFLSNLMGGLTHYGIGSAPIFYGANYVPLAKWW 529
Query: 535 GYGFIVSIVNIIIWLGVGGVWWKFIGLW 562
GYGF++SIVNI+IWLGVGG WWKFIGLW
Sbjct: 530 GYGFLISIVNILIWLGVGGAWWKFIGLW 557
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356542068|ref|XP_003539493.1| PREDICTED: 2-oxoglutarate/malate translocator, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 866 bits (2238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/563 (78%), Positives = 501/563 (88%), Gaps = 11/563 (1%)
Query: 1 MASLALTPSSC-SLGLHSLTSRSLKLTPRSTSTRLHSSNSNSNSLTQTNNLTFRNQYFLT 59
MAS+ALT ++ SL L T+ +LK P ++ N ++ S++ N + + + ++
Sbjct: 1 MASVALTTTALPSLRLRRNTTATLK--PNRHASISLKPNLHA-SISSFPNFSLKKPHLIS 57
Query: 60 NPSLKFKRLTVQASASAGAAVAPAPEQKPQQPWQGAALKPLIASIATGLILWFVPVPSGV 119
+ K LTV+ASA A++ PAP P QPWQGAA+KPLIASIATG+ILWF PVP+GV
Sbjct: 58 --TRKPSALTVRASA---ASITPAPA--PVQPWQGAAIKPLIASIATGVILWFSPVPAGV 110
Query: 120 SKNAWQLLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIA 179
++NAWQLLAIFL TIVGII QPLPLGAVA+LGLG SVLTKTL F+AAFS FGDPIPWLIA
Sbjct: 111 NRNAWQLLAIFLGTIVGIITQPLPLGAVAILGLGVSVLTKTLPFAAAFSGFGDPIPWLIA 170
Query: 180 LAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFL 239
LAFFFA+GFIKTGLGNR+AYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFL
Sbjct: 171 LAFFFAKGFIKTGLGNRVAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFL 230
Query: 240 PIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTIN 299
P+VK+LC+ACGSN GDGTEH+LG+WLMLTCFQTSVI+S+MFLTAMAANPL ATLT N+IN
Sbjct: 231 PLVKALCVACGSNAGDGTEHRLGAWLMLTCFQTSVITSAMFLTAMAANPLCATLTQNSIN 290
Query: 300 QPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEK 359
Q IGW+DWAKAAIVPGL SL++VPL+LY+IYPPT+KSSPDAPKLA+EKLEKMGPM+TNEK
Sbjct: 291 QTIGWLDWAKAAIVPGLASLVLVPLILYVIYPPTLKSSPDAPKLAKEKLEKMGPMTTNEK 350
Query: 360 IMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAA 419
IM TL LTVGLWVFGG LN+D V+AAILGLS+LLVTGVVTWKECLAE VAWDTLTWFAA
Sbjct: 351 IMTATLFLTVGLWVFGGLLNIDAVSAAILGLSVLLVTGVVTWKECLAEGVAWDTLTWFAA 410
Query: 420 LIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAM 479
LIAMAGYLNKYGLI+WFSQTVVKFVGGLGLSWQLSFGIL+LLYFYSHYFFASGAAHIGAM
Sbjct: 411 LIAMAGYLNKYGLISWFSQTVVKFVGGLGLSWQLSFGILVLLYFYSHYFFASGAAHIGAM 470
Query: 480 FTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFI 539
FTAFLSVA+ALG PP+F A+VL+F SNLMGGLTHYGIGSAPVF+GANYVPLAKWWGYGF+
Sbjct: 471 FTAFLSVATALGTPPFFGAIVLSFLSNLMGGLTHYGIGSAPVFFGANYVPLAKWWGYGFL 530
Query: 540 VSIVNIIIWLGVGGVWWKFIGLW 562
+SIVNIIIWLG+GGVWWKFIGLW
Sbjct: 531 ISIVNIIIWLGLGGVWWKFIGLW 553
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186522448|ref|NP_001119216.1| dicarboxylate transporter 1 [Arabidopsis thaliana] gi|332004440|gb|AED91823.1| dicarboxylate transporter 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 866 bits (2238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/567 (80%), Positives = 493/567 (86%), Gaps = 17/567 (2%)
Query: 1 MASLALTPSSCSLGLHSLTSRSLKLTPRSTSTRLH------SSNSNSNSLTQTNNLTFRN 54
MASLAL+ SCSL L SRSL L PR S+ L+ S +S + L ++ R
Sbjct: 1 MASLALS-GSCSLAF-PLKSRSLSL-PRPPSSSLNLTKPLRSLDSRFSLLKSPLPVSLRR 57
Query: 55 QYFLTNPSLKFKRLTVQASASAGAAVAPAPEQKPQQPWQGAALKPLIASIATGLILWFVP 114
+ ++ +K AS+S + PAP PWQGAA+KPL+ASIATGLILWFVP
Sbjct: 58 R---SSTLVKASSTVASASSSPTPPLVPAPV-----PWQGAAIKPLLASIATGLILWFVP 109
Query: 115 VPSGVSKNAWQLLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPI 174
VP GV++NAWQLLAIFLATIVGII QPLPLGAVAL+GLGASVLTKTLTF+AAFSAFGDPI
Sbjct: 110 VPEGVTRNAWQLLAIFLATIVGIITQPLPLGAVALMGLGASVLTKTLTFAAAFSAFGDPI 169
Query: 175 PWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARA 234
PWLIALAFFFARGFIKTGLGNR+AYQFV+LFGSSSLGLGYSLVFSEALLAPAIPSVSARA
Sbjct: 170 PWLIALAFFFARGFIKTGLGNRVAYQFVRLFGSSSLGLGYSLVFSEALLAPAIPSVSARA 229
Query: 235 GGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLT 294
GGIFLP+VKSLC+ACGSN GDGTEH+LGSWLMLTCFQTSVISSSMFLTAMAANPLSA L
Sbjct: 230 GGIFLPLVKSLCVACGSNVGDGTEHRLGSWLMLTCFQTSVISSSMFLTAMAANPLSANLA 289
Query: 295 LNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPM 354
NTI Q IGW DWAKAAIVPGLVSLIVVP LLY+IYPPTVKSSPDAPKLAQEKL+KMGPM
Sbjct: 290 FNTIKQTIGWTDWAKAAIVPGLVSLIVVPFLLYLIYPPTVKSSPDAPKLAQEKLDKMGPM 349
Query: 355 STNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLAESVAWDTL 414
S NE IMA TL LTVGLW+FG +L VD VTAAILGLS+LLVTGVVTWKECLAESVAWDTL
Sbjct: 350 SKNELIMAATLFLTVGLWIFGAKLGVDAVTAAILGLSVLLVTGVVTWKECLAESVAWDTL 409
Query: 415 TWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAA 474
TWFAALIAMAGYLNKYGLI WFSQTVVKFVGGLGLSWQLSFGIL+LLYFY+HYFFASGAA
Sbjct: 410 TWFAALIAMAGYLNKYGLIEWFSQTVVKFVGGLGLSWQLSFGILVLLYFYTHYFFASGAA 469
Query: 475 HIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWW 534
HIGAMFTAFLSV++ALG PPYF A+VLAF SNLMGGLTHYGIGSAP+FYGANYVPLAKWW
Sbjct: 470 HIGAMFTAFLSVSTALGTPPYFAALVLAFLSNLMGGLTHYGIGSAPIFYGANYVPLAKWW 529
Query: 535 GYGFIVSIVNIIIWLGVGGVWWKFIGL 561
GYGF++SIVNI+IWLGVGG WWKFIGL
Sbjct: 530 GYGFLISIVNILIWLGVGGAWWKFIGL 556
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225435448|ref|XP_002282809.1| PREDICTED: 2-oxoglutarate/malate translocator, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 863 bits (2230), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/562 (79%), Positives = 485/562 (86%), Gaps = 3/562 (0%)
Query: 1 MASLALTPSSCSLGLHSLTSRSLKLTPRSTSTRLHSSNSNSNSLTQTNNLTFRNQYFLTN 60
MASL L+ SSC LG SR + P + R S+++ Q+ T N + +
Sbjct: 1 MASLPLS-SSCHLGFRPF-SRG-QSPPSISFLRSRSTSNGGKQFQQSLLTTTTNPLRVPS 57
Query: 61 PSLKFKRLTVQASASAGAAVAPAPEQKPQQPWQGAALKPLIASIATGLILWFVPVPSGVS 120
P + R+ + + A+ + A P PWQGAALKPL A+IATG+ILWFVP P+GVS
Sbjct: 58 PISQTNRVARKLTTVVRASSSTAVTSNPNPPWQGAALKPLAAAIATGVILWFVPQPAGVS 117
Query: 121 KNAWQLLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIAL 180
+NAWQLLAIFLATIVGII QPLPLGAVALLGLGASVLTKTLTF+AAFSAFGDPIPWLIAL
Sbjct: 118 RNAWQLLAIFLATIVGIITQPLPLGAVALLGLGASVLTKTLTFAAAFSAFGDPIPWLIAL 177
Query: 181 AFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLP 240
AFFFARGFIKTGLGNRIAYQFV LFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLP
Sbjct: 178 AFFFARGFIKTGLGNRIAYQFVSLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLP 237
Query: 241 IVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQ 300
+VKSLC+ACGSN GDGTE++LGSWLMLTCFQTS ISS+MFLT MAANPLSA LT NTI Q
Sbjct: 238 LVKSLCVACGSNVGDGTENRLGSWLMLTCFQTSCISSAMFLTGMAANPLSANLTFNTIKQ 297
Query: 301 PIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKI 360
+GW +WAKAA VPGLVSLIVVPLLLY+IYPPTVKSSPDAPKLA+EKLE MGPMS NE I
Sbjct: 298 TLGWTEWAKAAFVPGLVSLIVVPLLLYVIYPPTVKSSPDAPKLAREKLENMGPMSRNEII 357
Query: 361 MAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAAL 420
MA TLLLTVGLW+FGG LNVD VTAAILGLS+LLVTGVVTWKECLAESVAWDTLTWFAAL
Sbjct: 358 MAVTLLLTVGLWIFGGVLNVDAVTAAILGLSVLLVTGVVTWKECLAESVAWDTLTWFAAL 417
Query: 421 IAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMF 480
IAMAGYLNKYGLI+WFSQTVVKFVGGLGLSWQLSF IL+LLYFYSHYFFASGAAHIGAMF
Sbjct: 418 IAMAGYLNKYGLISWFSQTVVKFVGGLGLSWQLSFSILLLLYFYSHYFFASGAAHIGAMF 477
Query: 481 TAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIV 540
TAFLSVASALG PPYF AMVLAF SNLMGGLTHYGIGSAP+FYGANYV LAKWWGYGF++
Sbjct: 478 TAFLSVASALGTPPYFGAMVLAFLSNLMGGLTHYGIGSAPIFYGANYVSLAKWWGYGFLI 537
Query: 541 SIVNIIIWLGVGGVWWKFIGLW 562
SIVNI+IWLGVGGVWWK IGLW
Sbjct: 538 SIVNIVIWLGVGGVWWKAIGLW 559
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811397|ref|XP_002873582.1| hypothetical protein ARALYDRAFT_909232 [Arabidopsis lyrata subsp. lyrata] gi|297319419|gb|EFH49841.1| hypothetical protein ARALYDRAFT_909232 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 863 bits (2229), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/562 (81%), Positives = 491/562 (87%), Gaps = 8/562 (1%)
Query: 1 MASLALTPSSCSLGLHSLTSRSLKLTPRSTSTRLHSSNSNSNSLTQTNNLTFRNQYFLTN 60
MASLAL+ SCSL L SRSL L PR S SS + + L ++ + L
Sbjct: 1 MASLALS-GSCSLAF-PLKSRSLSL-PRPPS----SSFNLTKPLRSLDSRFSLLKSPLPA 53
Query: 61 PSLKFKRLTVQASASAGAAVAPAPEQKPQQPWQGAALKPLIASIATGLILWFVPVPSGVS 120
SL +R + AS+ AA P PWQGAA+KPLIASIATGLILWFVPVP GV+
Sbjct: 54 ASLN-RRSSTLVKASSAAASPSPPVAPAPVPWQGAAIKPLIASIATGLILWFVPVPEGVT 112
Query: 121 KNAWQLLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIAL 180
+NAWQLLAIFLATIVGII QPLPLGAVALLGLGASVLTKTLTF+AAFSAFGDPIPWLIAL
Sbjct: 113 RNAWQLLAIFLATIVGIITQPLPLGAVALLGLGASVLTKTLTFTAAFSAFGDPIPWLIAL 172
Query: 181 AFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLP 240
AFFFARGFIKTGLGNR+AYQFV+LFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLP
Sbjct: 173 AFFFARGFIKTGLGNRVAYQFVRLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLP 232
Query: 241 IVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQ 300
+VKSLC+ACGSN GDGTEH+LGSWLMLTCFQTSVISSSMFLTAMAANPLSA L NTI Q
Sbjct: 233 LVKSLCVACGSNVGDGTEHRLGSWLMLTCFQTSVISSSMFLTAMAANPLSANLAFNTIKQ 292
Query: 301 PIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKI 360
IGW DWAKAAIVPGLVSLIVVP LLY+IYPPTVKSSPDAPKLAQEKL+KMGPMS NE I
Sbjct: 293 TIGWTDWAKAAIVPGLVSLIVVPFLLYLIYPPTVKSSPDAPKLAQEKLDKMGPMSKNELI 352
Query: 361 MAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAAL 420
MA TL LTVGLW+FG +L+VD VTAAILGLS+LLVTGVVTWKECLAESVAWDTLTWFAAL
Sbjct: 353 MAATLFLTVGLWIFGAKLSVDAVTAAILGLSVLLVTGVVTWKECLAESVAWDTLTWFAAL 412
Query: 421 IAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMF 480
IAMAGYLNKYGLI WFSQTVVKFVGGLGLSWQLSFGIL+LLYFY+HYFFASGAAHIGAMF
Sbjct: 413 IAMAGYLNKYGLIEWFSQTVVKFVGGLGLSWQLSFGILVLLYFYTHYFFASGAAHIGAMF 472
Query: 481 TAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIV 540
TAFLSV++ALG PPYF A+VLAF SNLMGGLTHYGIGSAP+FYGANYVPLAKWWGYGF++
Sbjct: 473 TAFLSVSTALGTPPYFAALVLAFLSNLMGGLTHYGIGSAPIFYGANYVPLAKWWGYGFLI 532
Query: 541 SIVNIIIWLGVGGVWWKFIGLW 562
SIVNI+IWLGVGG WWKFIGLW
Sbjct: 533 SIVNILIWLGVGGAWWKFIGLW 554
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224104143|ref|XP_002313335.1| 2-oxoglutarate/malate translocator [Populus trichocarpa] gi|222849743|gb|EEE87290.1| 2-oxoglutarate/malate translocator [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2216), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/466 (92%), Positives = 451/466 (96%)
Query: 97 LKPLIASIATGLILWFVPVPSGVSKNAWQLLAIFLATIVGIIAQPLPLGAVALLGLGASV 156
+KPL+ASIATG+ILWFVPVP+GV+K AWQLLAIFLATIVGII QPLPLGAVAL+GLGASV
Sbjct: 1 MKPLLASIATGVILWFVPVPAGVTKPAWQLLAIFLATIVGIITQPLPLGAVALMGLGASV 60
Query: 157 LTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSL 216
LTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFV LFGSSSLGLGYSL
Sbjct: 61 LTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVSLFGSSSLGLGYSL 120
Query: 217 VFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVIS 276
VFSEALLAPAIPSVSARAGGIFLP+VKSLC+ACGSN GDGTEHKLGSWLMLTCFQTSVIS
Sbjct: 121 VFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNAGDGTEHKLGSWLMLTCFQTSVIS 180
Query: 277 SSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKS 336
SSMFLTAMAANPLSATLTLNTI Q IGW DWAKAAIVPGLVSLIVVPL+LY IYPPTVK+
Sbjct: 181 SSMFLTAMAANPLSATLTLNTIKQTIGWTDWAKAAIVPGLVSLIVVPLILYFIYPPTVKT 240
Query: 337 SPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVT 396
SPDAPKLA+EKLEKMGPMSTNE IMAGTL LTVGLW+FGG LNVD VTAAILGLS+LLVT
Sbjct: 241 SPDAPKLAREKLEKMGPMSTNEIIMAGTLFLTVGLWIFGGMLNVDAVTAAILGLSVLLVT 300
Query: 397 GVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFG 456
GVVTWKECLAE+VAWDTLTWFAALIAMAGYLNKYGLI+WFSQTVVKFVGGLGLSWQLSFG
Sbjct: 301 GVVTWKECLAEAVAWDTLTWFAALIAMAGYLNKYGLISWFSQTVVKFVGGLGLSWQLSFG 360
Query: 457 ILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGI 516
IL+LLYFYSHYFFASGAAHIGAMFTAFLSVASALG PP F AMVLAFFSNLMGGLTHYGI
Sbjct: 361 ILVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPLFGAMVLAFFSNLMGGLTHYGI 420
Query: 517 GSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGLW 562
GSAPVFYGANYVPLAKWWGYGF++S+VNIIIWLGVGGVWWKFIGLW
Sbjct: 421 GSAPVFYGANYVPLAKWWGYGFLISVVNIIIWLGVGGVWWKFIGLW 466
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|312281721|dbj|BAJ33726.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2216), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/567 (80%), Positives = 485/567 (85%), Gaps = 17/567 (2%)
Query: 1 MASLALTPSSCSLGLHSLTSRSLKLTPRSTSTR-----LHSSNSNSNSLTQTNNLTFRNQ 55
MASLAL+ SCSL L SRSL L PR S+ L S++S + L + +
Sbjct: 1 MASLALS-GSCSLAF-PLKSRSL-LLPRPPSSLNLLKPLRSADSRISLLKSPLPVALTRR 57
Query: 56 YFLTNPSLKFKRLTVQASASAGAAVAPAPEQKPQQPWQGAALKPLIASIATGLILWFVPV 115
L S + + A A PWQGAA+KPL+ASIATGLILWFVPV
Sbjct: 58 STLVKASSAAAASSSSSPAPVLPA---------PAPWQGAAIKPLLASIATGLILWFVPV 108
Query: 116 PSGVSKNAWQLLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIP 175
P GV++NAWQLLAIFLATIVGII QPLPLGAVALLGLGASVLTKTLTF+AAFSAFGDPIP
Sbjct: 109 PEGVTRNAWQLLAIFLATIVGIITQPLPLGAVALLGLGASVLTKTLTFAAAFSAFGDPIP 168
Query: 176 WLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAG 235
WLIALAFFFARGFIKTGLGNR+AYQFV+LFGSSSLGLGYSLVFSEALLAPAIPSVSARAG
Sbjct: 169 WLIALAFFFARGFIKTGLGNRVAYQFVRLFGSSSLGLGYSLVFSEALLAPAIPSVSARAG 228
Query: 236 GIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTL 295
GIFLP+VKSLC+ACGSN GDGTEH+LGSWLMLTCFQTSVISSSMFLTAMAANPLSA L
Sbjct: 229 GIFLPLVKSLCVACGSNVGDGTEHRLGSWLMLTCFQTSVISSSMFLTAMAANPLSANLAF 288
Query: 296 NTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMS 355
NTI Q IGW DWAKAAIVPGLVSLIVVP LLYIIYPPTVKSSPDAPKLAQEKL+KMGPMS
Sbjct: 289 NTIKQTIGWTDWAKAAIVPGLVSLIVVPFLLYIIYPPTVKSSPDAPKLAQEKLDKMGPMS 348
Query: 356 TNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLT 415
NE IMA TL LTVGLW+FG +L VD VTAAILGLS+LLVTGVVTWKECLAESVAWDTLT
Sbjct: 349 KNELIMAATLFLTVGLWIFGAKLGVDAVTAAILGLSVLLVTGVVTWKECLAESVAWDTLT 408
Query: 416 WFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAH 475
WFAALIAMAGYLNKYGLI WFSQTVVKFVGGLGLSWQLSFGIL+LLYFY+HYFFASGAAH
Sbjct: 409 WFAALIAMAGYLNKYGLIEWFSQTVVKFVGGLGLSWQLSFGILVLLYFYTHYFFASGAAH 468
Query: 476 IGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWG 535
IGAMFTAFLSV++ALG PPYF A+VLAF SNLMGGLTHYGIGSAP+FYGANYVPLAKWWG
Sbjct: 469 IGAMFTAFLSVSTALGTPPYFAALVLAFLSNLMGGLTHYGIGSAPIFYGANYVPLAKWWG 528
Query: 536 YGFIVSIVNIIIWLGVGGVWWKFIGLW 562
YGF +SIVNI+IWLGVGG WWKFIGLW
Sbjct: 529 YGFAISIVNILIWLGVGGAWWKFIGLW 555
|
Source: Thellungiella halophila Species: Eutrema halophilum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224059566|ref|XP_002299910.1| 2-oxoglutarate/malate translocator [Populus trichocarpa] gi|222847168|gb|EEE84715.1| 2-oxoglutarate/malate translocator [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/466 (91%), Positives = 448/466 (96%)
Query: 97 LKPLIASIATGLILWFVPVPSGVSKNAWQLLAIFLATIVGIIAQPLPLGAVALLGLGASV 156
+KPL+ASIA G+ILWFVPVPSGV+K AWQLLAIFLATIVGII QPLPLGAVAL+GLGASV
Sbjct: 1 MKPLLASIAIGVILWFVPVPSGVTKPAWQLLAIFLATIVGIITQPLPLGAVALMGLGASV 60
Query: 157 LTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSL 216
LTKTL FSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFV LFGSSSLGLGYSL
Sbjct: 61 LTKTLPFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVSLFGSSSLGLGYSL 120
Query: 217 VFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVIS 276
VFSEALLAPAIPSVSARAGGIFLP+VKSLC+ACGSN GDGTEH+LGSWLMLTCFQTSVIS
Sbjct: 121 VFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNVGDGTEHRLGSWLMLTCFQTSVIS 180
Query: 277 SSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKS 336
SSMFLTAMAANPLSATLT NTI Q IGW DWAKAAIVPGL+SLIVVPL+LY+IYPPTVKS
Sbjct: 181 SSMFLTAMAANPLSATLTFNTIQQTIGWTDWAKAAIVPGLISLIVVPLILYLIYPPTVKS 240
Query: 337 SPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVT 396
SPDAPKLA+EKLEKMGPM+TNE IMAGTL LTVGLW+FGG LNVD VTAAILGLS+LL+T
Sbjct: 241 SPDAPKLAREKLEKMGPMTTNEIIMAGTLFLTVGLWIFGGMLNVDAVTAAILGLSVLLIT 300
Query: 397 GVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFG 456
GVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLI+WFSQTVVKFVGGLGLSWQLSFG
Sbjct: 301 GVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLISWFSQTVVKFVGGLGLSWQLSFG 360
Query: 457 ILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGI 516
IL+LLYFYSHYFFASGAAHIGAMFTAFLSVASALG PPYF AMVLAF SNLMGGLTHYGI
Sbjct: 361 ILVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPYFGAMVLAFLSNLMGGLTHYGI 420
Query: 517 GSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGLW 562
GSAP+FYGANYVPLAKWWGYGF++S+VNIIIWLGVGGVWWK IGLW
Sbjct: 421 GSAPIFYGANYVPLAKWWGYGFLISVVNIIIWLGVGGVWWKAIGLW 466
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 562 | ||||||
| TAIR|locus:2182270 | 557 | DiT1 "dicarboxylate transporte | 0.839 | 0.847 | 0.798 | 4.2e-205 | |
| UNIPROTKB|Q41364 | 569 | DIT1 "Dicarboxylate transporte | 0.841 | 0.831 | 0.775 | 9.4e-201 | |
| TAIR|locus:2173358 | 563 | DIT2.1 "dicarboxylate transpor | 0.841 | 0.840 | 0.478 | 8.4e-113 | |
| UNIPROTKB|Q8L7Z9 | 564 | DIT2 "Dicarboxylate transporte | 0.845 | 0.842 | 0.452 | 7e-109 | |
| TIGR_CMR|CHY_0060 | 466 | CHY_0060 "anion transporter fa | 0.816 | 0.984 | 0.439 | 8.6e-104 | |
| TAIR|locus:2173343 | 549 | DiT2.2 "dicarboxylate transpor | 0.839 | 0.859 | 0.434 | 2.8e-103 | |
| UNIPROTKB|P75763 | 477 | ybhI "YbhI DASS Transporter" [ | 0.823 | 0.970 | 0.308 | 7.6e-64 | |
| UNIPROTKB|P39414 | 487 | ttdT [Escherichia coli K-12 (t | 0.777 | 0.897 | 0.306 | 2.3e-60 | |
| UNIPROTKB|P0AE74 | 487 | citT "citrate:succinate antipo | 0.809 | 0.934 | 0.283 | 4.7e-48 | |
| TIGR_CMR|BA_2211 | 476 | BA_2211 "sodium/solute symport | 0.654 | 0.773 | 0.226 | 3.6e-10 |
| TAIR|locus:2182270 DiT1 "dicarboxylate transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1984 (703.5 bits), Expect = 4.2e-205, P = 4.2e-205
Identities = 377/472 (79%), Positives = 400/472 (84%)
Query: 91 PWQGAALKPLIASIATGLILWFVPVPSGVSKNAWQLLAIFLATIVGIIAQXXXXXXXXXX 150
PWQGAA+KPL+ASIATGLILWFVPVP GV++NAWQLLAIFLATIVGII Q
Sbjct: 86 PWQGAAIKPLLASIATGLILWFVPVPEGVTRNAWQLLAIFLATIVGIITQPLPLGAVALM 145
Query: 151 XXXXXXXTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKXXXXXXX 210
TKTLTF+AAFSAFGDPIPWLIALAFFFARGFIKTGLGNR+AYQFV+
Sbjct: 146 GLGASVLTKTLTFAAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRVAYQFVRLFGSSSL 205
Query: 211 XXXXXXVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCF 270
VFSEALLAPAIPSVSARAGGIFLP+VKSLC+ACGSN GDGTEH+LGSWLMLTCF
Sbjct: 206 GLGYSLVFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNVGDGTEHRLGSWLMLTCF 265
Query: 271 QTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAXXXXXXXXXXXXXXXXXXX 330
QTSVISSSMFLTAMAANPLSA L NTI Q IGW DWAKAA
Sbjct: 266 QTSVISSSMFLTAMAANPLSANLAFNTIKQTIGWTDWAKAAIVPGLVSLIVVPFLLYLIY 325
Query: 331 XXTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGL 390
TVKSSPDAPKLAQEKL+KMGPMS NE IMA TL LTVGLW+FG +L VD VTAAILGL
Sbjct: 326 PPTVKSSPDAPKLAQEKLDKMGPMSKNELIMAATLFLTVGLWIFGAKLGVDAVTAAILGL 385
Query: 391 SILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLS 450
S+LLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLI WFSQTVVKFVGGLGLS
Sbjct: 386 SVLLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLIEWFSQTVVKFVGGLGLS 445
Query: 451 WQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGG 510
WQLSFGIL+LLYFY+HYFFASGAAHIGAMFTAFLSV++ALG PPYF A+VLAF SNLMGG
Sbjct: 446 WQLSFGILVLLYFYTHYFFASGAAHIGAMFTAFLSVSTALGTPPYFAALVLAFLSNLMGG 505
Query: 511 LTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGLW 562
LTHYGIGSAP+FYGANYVPLAKWWGYGF++SIVNI+IWLGVGG WWKFIGLW
Sbjct: 506 LTHYGIGSAPIFYGANYVPLAKWWGYGFLISIVNILIWLGVGGAWWKFIGLW 557
|
|
| UNIPROTKB|Q41364 DIT1 "Dicarboxylate transporter 1, chloroplastic" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 1943 (689.0 bits), Expect = 9.4e-201, P = 9.4e-201
Identities = 367/473 (77%), Positives = 399/473 (84%)
Query: 90 QPWQGAALKPLIASIATGLILWFVPVPSGVSKNAWQLLAIFLATIVGIIAQXXXXXXXXX 149
QPWQGA++KPL+ASI TG+I+WF+P P GVS+NAWQLLAIFL+TIVGII Q
Sbjct: 97 QPWQGASIKPLLASILTGVIIWFIPTPEGVSRNAWQLLAIFLSTIVGIITQPLPLGAVAL 156
Query: 150 XXXXXXXXTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKXXXXXX 209
TKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVK
Sbjct: 157 MGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSS 216
Query: 210 XXXXXXXVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTC 269
VFSEALLAPAIPSVSARAGGIFLP+VKSLC+ACGSN GDGTE KLG+WLMLTC
Sbjct: 217 LGLGYSLVFSEALLAPAIPSVSARAGGIFLPLVKSLCIACGSNVGDGTERKLGAWLMLTC 276
Query: 270 FQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAXXXXXXXXXXXXXXXXXX 329
FQTSVISSSMFLTAMAANPLSATLT NTI + IGWMDWAKAA
Sbjct: 277 FQTSVISSSMFLTAMAANPLSATLTFNTIGKAIGWMDWAKAAFVPGLVSLIVVPLLLYVV 336
Query: 330 XXXTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILG 389
+KSSPDAP+LA+EKL+KMGPM+ NE IMA TLLLTVGLWVFGG+L VD VTAAILG
Sbjct: 337 YPPEIKSSPDAPRLAKEKLDKMGPMTKNESIMAVTLLLTVGLWVFGGKLGVDAVTAAILG 396
Query: 390 LSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGL 449
LS+LL+TGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFS+ VVK VGGLGL
Sbjct: 397 LSVLLITGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSENVVKVVGGLGL 456
Query: 450 SWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMG 509
SWQ+SFG+L+LLYFYSHYFFASGAAHIGAMFTAFLSVASALG PP+ A+VL+F SNLMG
Sbjct: 457 SWQMSFGVLVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPFLAAIVLSFLSNLMG 516
Query: 510 GLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGLW 562
GLTHYGIGSAPVFYGANYVPL +WWGYGF++SIVN+IIWLGVGG+WWK IGLW
Sbjct: 517 GLTHYGIGSAPVFYGANYVPLPQWWGYGFLISIVNLIIWLGVGGLWWKAIGLW 569
|
|
| TAIR|locus:2173358 DIT2.1 "dicarboxylate transport 2.1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1113 (396.9 bits), Expect = 8.4e-113, P = 8.4e-113
Identities = 229/479 (47%), Positives = 293/479 (61%)
Query: 88 PQQPWQGAALKPLIASIATGLILWF-VPVPSGVSKNAWQLLAIFLATIVGIIAQXXXXXX 146
P QGA L PLI SI+ GLIL F VPVP GV+ WQLL+IFL+TI G++
Sbjct: 87 PSPSPQGAKLIPLILSISVGLILRFAVPVPEGVTPQGWQLLSIFLSTIAGLVLSPLPVGA 146
Query: 147 XXXXXXXXXXXTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKXXX 206
TKTL+FSAAFSAF + WLI ++FFFARGF+KTGLG+RIA FVK
Sbjct: 147 WAFIGLTASIVTKTLSFSAAFSAFTSEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLG 206
Query: 207 XXXXXXXXXXVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLM 266
SEAL+APA+PS +ARAGGIFLPI+KSL L+ GS D + KLGS+L+
Sbjct: 207 KSTLGLSYGLTLSEALIAPAMPSTTARAGGIFLPIIKSLSLSAGSKPNDSSSRKLGSYLI 266
Query: 267 LTCFQTSVISSSMFLTAMAANPLSATLTLN---TINQPIGWMDWAKAAXXXXXXXXXXXX 323
+ FQ + SS++FLTA A N L L I+ P W+ W KAA
Sbjct: 267 QSQFQCAGNSSALFLTAAAQNLLCLKLAEELGVVISNP--WVSWFKAASLPAIISLLCTP 324
Query: 324 XXXXXXXXXTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPV 383
K +P+AP +A KL++MGP++ NE IM GT+LL V LW+ G L + V
Sbjct: 325 LILYKLYPPETKDTPEAPGIAATKLKQMGPVTKNEWIMVGTMLLAVTLWICGETLGIPSV 384
Query: 384 TAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKF 443
AA++GLSILLV GV+ W +CL+E AWDTL WFA L+ MAG L G++TW S V K
Sbjct: 385 VAAMIGLSILLVLGVLNWDDCLSEKSAWDTLAWFAVLVGMAGQLTNLGVVTWMSDCVAKV 444
Query: 444 VGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAF 503
+ L LSW +FG+L YF+ HY FAS H+GA+F+AFL++ A G P A+ LA+
Sbjct: 445 LQSLSLSWPAAFGLLQAAYFFIHYLFASQTGHVGALFSAFLAMHIAAGVPGILAALALAY 504
Query: 504 FSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGLW 562
+NL G LTHY G A V+YGA YV L + GF+++ +N IIW VG WWKF+GL+
Sbjct: 505 NTNLFGALTHYSSGQAAVYYGAGYVDLPDVFKIGFVMATINAIIWGVVGTFWWKFLGLY 563
|
|
| UNIPROTKB|Q8L7Z9 DIT2 "Dicarboxylate transporter 2, chloroplastic" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 1076 (383.8 bits), Expect = 7.0e-109, P = 7.0e-109
Identities = 216/477 (45%), Positives = 291/477 (61%)
Query: 88 PQQPWQGAALKPLIASIATGLILWF-VPVPSGVSKNAWQLLAIFLATIVGIIAQXXXXXX 146
P GA L PLI S++ GL+L F VP P+ ++ AWQLLAIFL+T+ G++
Sbjct: 88 PPPTKSGAKLIPLILSVSVGLLLRFAVPKPAELTPQAWQLLAIFLSTVAGLVLSPLPVGA 147
Query: 147 XXXXXXXXXXXTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKXXX 206
TKTL F AF AF + + WLI ++FFFARGF+KTGLG+RIA FVK
Sbjct: 148 WAFLGVTASVVTKTLPFPTAFCAFTNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLG 207
Query: 207 XXXXXXXXXXVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLM 266
SEAL+APA+PS +ARAGGIFLPI+KSL ++ GS G + KLG++L+
Sbjct: 208 KSTLGLSYGLTISEALVAPAMPSTTARAGGIFLPIIKSLSISSGSLPGGESRKKLGTYLI 267
Query: 267 LTCFQTSVISSSMFLTAMAANPLSATLTLNT-INQPIGWMDWAKAAXXXXXXXXXXXXXX 325
+T FQ++ SS++FLTA A N L L + W+ W KAA
Sbjct: 268 MTQFQSAGNSSALFLTAAAQNLLCLKLAEELGVKIASPWVFWLKAASLPAFVALLLTPLI 327
Query: 326 XXXXXXXTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTA 385
+K +P+AP LA EKL+ MGP++ NE +M GT+LL V LWVFG ++ V V A
Sbjct: 328 LYKLYPPELKDTPEAPALAAEKLKNMGPVTKNEWVMVGTMLLAVSLWVFGEKIGVSSVVA 387
Query: 386 AILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVG 445
A+LGLS+LL+ GV+ W +CL E AWDTL WFA L+ MA L G+++W S V + +
Sbjct: 388 AMLGLSVLLLLGVLDWNDCLNEKSAWDTLAWFAVLVGMASQLTNLGIVSWMSGCVARSLK 447
Query: 446 GLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFS 505
+ LSW +FGIL YF+ HY FAS H+GA+++AFL++ A G P A+ LA+ +
Sbjct: 448 TMNLSWPAAFGILQAAYFFVHYLFASQTGHVGALYSAFLAMNIASGVPGVLAALALAYNT 507
Query: 506 NLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGLW 562
NL G LTHY G A V+YGA YV L + GFI++++N IW VGGVWWK +G++
Sbjct: 508 NLFGALTHYSSGQAAVYYGAGYVDLPDVFKMGFIMAVINATIWTVVGGVWWKILGIY 564
|
|
| TIGR_CMR|CHY_0060 CHY_0060 "anion transporter family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
Identities = 203/462 (43%), Positives = 274/462 (59%)
Query: 101 IASIATGLILWFVPVPSGVSKNAWQLLAIFLATIVGIIAQXXXXXXXXXXXXXXXXXTKT 160
+ + A GL +WF P+P+G+ AW LLAIF+ATI+G I Q T
Sbjct: 8 LLTCAVGLAIWFSPIPTGLDPKAWHLLAIFVATIIGFILQPLPIGAIAFISVTLSALTGI 67
Query: 161 LTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKXXXXXXXXXXXXXVFSE 220
L AA + F + WLI AF FA GF+KTGLG RIAY ++ V S+
Sbjct: 68 LDAKAALAGFANSTIWLIVSAFIFAIGFVKTGLGLRIAYYLIRLLGDSTLKLGYTLVLSD 127
Query: 221 ALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMF 280
+++PA PS +ARAGG+ PIV+SL A GS G+ + K+G++LM T +Q + I+S+MF
Sbjct: 128 LIISPATPSNTARAGGVLFPIVRSLAEAFGSKPGE-SPRKVGAYLMQTAYQGNAITSAMF 186
Query: 281 LTAMAANPLSATLTLNTINQPIGWMDWAKAAXXXXXXXXXXXXXXXXXXXXXTVKSSPDA 340
LT+MA NPL A L L T+ I W WAKAA +K +P+A
Sbjct: 187 LTSMAGNPLIALLALKTLKIDITWNLWAKAAIVPGIISILVIPYLLYKIYPPEIKKTPEA 246
Query: 341 PKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVT 400
++A ++L KMGPM EK++A + + LW +D A+LG+S +LV V+
Sbjct: 247 KEIAAKELVKMGPMKFEEKVLAIVFIGALILWATSQYTKIDATIVAMLGVSAMLVAKVID 306
Query: 401 WKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILIL 460
WK+ LAE AWDTL W L+A+AG L++ G I WF++ V + G+ SW +F IL++
Sbjct: 307 WKDVLAEKGAWDTLVWMGVLVALAGNLSELGFIPWFAKNVGNMISGI--SWFWAFVILLV 364
Query: 461 LYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAP 520
+Y Y+HY FAS AHI AM+ AF SVA A G PPY VA+ LAF SNL LTHY G +P
Sbjct: 365 VYLYAHYGFASLTAHITAMYAAFASVAVAAGAPPYLVALSLAFMSNLCMSLTHYAAGPSP 424
Query: 521 VFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGLW 562
+++GA YV WW GFIVSIVN+ IW+G+G VWWK +GLW
Sbjct: 425 IYFGAGYVDQGTWWKLGFIVSIVNLFIWVGIGAVWWKALGLW 466
|
|
| TAIR|locus:2173343 DiT2.2 "dicarboxylate transporter 2.2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1000 (357.1 bits), Expect = 2.8e-103, Sum P(2) = 2.8e-103
Identities = 208/479 (43%), Positives = 276/479 (57%)
Query: 88 PQQPWQGAALKPLIASIATGLILWF-VPVPSGVSKNAWQLLAIFLATIVGIIAQXXXXXX 146
P QP QGA L PL S++ GLI+ F +P P V+ WQLL+IFL TI G++
Sbjct: 74 PPQP-QGAKLIPLAISVSIGLIVRFLIPRPEQVTSQGWQLLSIFLFTISGLVLGPLPVGA 132
Query: 147 XXXXXXXXXXXTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKXXX 206
TKTL FS AF+AF + + WLIA++FFFARGFIKTGLG+RIA FVK
Sbjct: 133 WAFIGLTASIVTKTLPFSTAFAAFTNELIWLIAISFFFARGFIKTGLGDRIATYFVKWLG 192
Query: 207 XXXXXXXXXXVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLM 266
F E L+ +PS ARAGG+FLP++KSL ++ GS GD + KLGS+L+
Sbjct: 193 KSTLGLSYGLAFCETLMGLIMPSTMARAGGVFLPVIKSLAISAGSYPGDPSSRKLGSFLI 252
Query: 267 LTCFQTSVISSSMFLTAMAANPLSATLTLNT---INQPIGWMDWAKAAXXXXXXXXXXXX 323
T Q S S ++ LT+ A N L L I+ P W+ W K A
Sbjct: 253 QTQLQCSGASGAILLTSAAQNLLCLKLAREVGVVISNP--WITWFKVASVPAFVSLLCTP 310
Query: 324 XXXXXXXXXTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPV 383
+K +P+AP A +KLE++GP++ NE IM G + TV LWVFG + + V
Sbjct: 311 LIIYKLYPPELKHTPEAPAAAAKKLERLGPITKNEWIMLGAMAFTVSLWVFGEAIGIASV 370
Query: 384 TAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKF 443
+A++GLS LL+ GV+ W +CL++ AWD+LTWFA LI MAG L G++ W S V K
Sbjct: 371 VSAMIGLSTLLLLGVINWDDCLSDKSAWDSLTWFAVLIGMAGQLTNLGVVAWMSDCVAKL 430
Query: 444 VGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAF 503
+ L L+W SF IL Y HY FAS H GA++ FL++ A G P A+ LAF
Sbjct: 431 LQSLSLTWPASFIILQACYLLIHYLFASQTGHAGALYPPFLAMQIAAGVPGVLAALCLAF 490
Query: 504 FSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGLW 562
+NL G L HY G A ++YGA YV L + GF++++V IIW GVG WWKF+GL+
Sbjct: 491 NNNLSGALAHYSGGPAALYYGAGYVDLRDMFRVGFVMALVQAIIWGGVGSFWWKFLGLY 549
|
|
| UNIPROTKB|P75763 ybhI "YbhI DASS Transporter" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 146/474 (30%), Positives = 234/474 (49%)
Query: 96 ALKPLIASIATGLILWFVPVPSGVSKNAWQLLAIFLATIVGIIAQ------XXXXXXXXX 149
+L LI +A I+ F+P P+G+S+ AW L I+LA IVG++ +
Sbjct: 5 SLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAAS 64
Query: 150 XXXXXXXXTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKXXXXXX 209
+A S + WL+ AF + F+ TGLG RIAY +
Sbjct: 65 MVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGNTT 124
Query: 210 XXXXXXXVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTC 269
VF + +LAPA PS +ARAGGI LPI+ S+ +A GS + + ++G +LM++
Sbjct: 125 LGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEP-EKSPRRVGHYLMMSI 183
Query: 270 FQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAXXXXXXXXXXXXXXXXXX 329
+ + +S MF TAMA N L+ + + ++ I W WA AA
Sbjct: 184 YMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVIYTM 243
Query: 330 XXXTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILG 389
+K D +A+ L ++GPM EK++ G +L + W+F L VD T AI+
Sbjct: 244 YPPEIKKV-DNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVV 302
Query: 390 LSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGL 449
++ +L+ G+VTW++ + W+TL W+ +I ++ L+K W ++ + G
Sbjct: 303 MATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFDGH 362
Query: 450 SWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMG 509
++F ++I L YFFASG+A+I AM F +A+ G P A+ L FSN G
Sbjct: 363 G-NVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALAL-LFSNSYG 420
Query: 510 GL-THYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGLW 562
G+ THYG + PV +G Y + WW G +++I+ ++ + +G WW + W
Sbjct: 421 GMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGW 474
|
|
| UNIPROTKB|P39414 ttdT [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 555 (200.4 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 143/466 (30%), Positives = 228/466 (48%)
Query: 100 LIASIATGLILWFV--PVPSGVSKNAWQLLAIFLATIVGIIAQXXXXXXXXXXXXXXXXX 157
L ++ TG+I+ + PVP V +A+ +I+ I++
Sbjct: 35 LYFAVFTGVIVGLILEPVPGAV-------VAMVGISIIAILSPWLLFSPEQLAQPGFKFT 87
Query: 158 TKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKXXXXXXXXXXXXXV 217
K+L++ A S F + + WLI AF F G+ KTGLG RIA VK +
Sbjct: 88 AKSLSW--AVSGFSNSVIWLIFAAFMFGTGYEKTGLGRRIALILVKKMGHRTLFLGYAVM 145
Query: 218 FSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISS 277
FSE +LAP PS SAR GI PI+++L S D + +GS++M ++S
Sbjct: 146 FSELILAPVTPSNSARGAGIIYPIIRNLPPLYQSQPNDSSSRSIGSYIMWMGIVADCVTS 205
Query: 278 SMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAXXXXXXXXXXXXXXXXXXXXXTVKSS 337
++FLTAMA N L L + + + W DW +KS
Sbjct: 206 AIFLTAMAPNLLLIGLMKSASHATLSWGDWFLGMLPLSILLVLLVPWLAYVLYPPVLKSG 265
Query: 338 PDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSI---LL 394
P+ A+ +L+ MGP+ + EK M G ++ + LW+FGG D + AA++G S+ +L
Sbjct: 266 DQVPRWAETELQAMGPLCSREKRMLGLMVGALVLWIFGG----DYIDAAMVGYSVVALML 321
Query: 395 VTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGL-GLSWQL 453
+ +++W + ++ AW+ W A+LI +A LN G I+WF + + G L G S +
Sbjct: 322 LLRIISWDDIVSNKAAWNVFFWLASLITLATGLNNTGFISWFGKLLA---GSLSGYSPTM 378
Query: 454 SFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCP----PYFVAMVLAFFSNLMG 509
LI++++ YFFAS A+ A+ A + +A+AL P P F MV A L
Sbjct: 379 VMVALIVVFYLLRYFFASATAYTSAL--APMMIAAALAMPEIPLPVFCLMVGAAIG-LGS 435
Query: 510 GLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVW 555
LT Y G +P++YG+ Y+P A +W G I ++ +++ + G +W
Sbjct: 436 ILTPYATGPSPIYYGSGYLPTADYWRLGAIFGLIFLVLLVITGLLW 481
|
|
| UNIPROTKB|P0AE74 citT "citrate:succinate antiporter" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 135/476 (28%), Positives = 213/476 (44%)
Query: 88 PQQPWQGAALKPLIASIATGLILWFVPVPSGVSKNAWQLLAIFLATIVGIIAQXXXXXXX 147
P Q W A+ +A I G+IL P+P+ A +A+ + ++G +
Sbjct: 31 PPQAWHYFAV--FVAMIV-GMIL--EPIPA----TAISFIAVTIC-VIG--SNYLLFDAK 78
Query: 148 XXXXXXXXXXTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKXXXX 207
+ L + A F WL+ AF FA G+ +GLG RIA VK
Sbjct: 79 ELADPAFNAQKQALKWGLA--GFSSTTVWLVFGAFIFALGYEVSGLGRRIALFLVKFMGK 136
Query: 208 XXXXXXXXXVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLML 267
V + LLAP PS +AR GG P++K+L S D + ++G +LM
Sbjct: 137 RTLTLGYAIVIIDILLAPFTPSNTARTGGTVFPVIKNLPPLFKSFPNDPSARRIGGYLMW 196
Query: 268 TCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAXXXXXXXXXXXXXXXX 327
++ +SSSMF+T A N L I W+ W
Sbjct: 197 MMVISTSLSSSMFVTGAAPNVLGLEFVSKIAGIQISWLQWFLCFLPVGVILLIIAPWLSY 256
Query: 328 XXXXXTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAI 387
+ S + A ++L+ MG ++ E + G +LL++GLWVFG + ++ +
Sbjct: 257 VLYKPEITHSEEVATWAGDELKTMGALTRREWTLIGLVLLSLGLWVFGSEV-INATAVGL 315
Query: 388 LGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGL 447
L +S++L VV WK+ + AW+TL A L+ MA L + G I WF+ T+ + G
Sbjct: 316 LAVSLMLALHVVPWKDITRYNSAWNTLVNLATLVVMANGLTRSGFIDWFAGTMSTHLEGF 375
Query: 448 GLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASAL-GCPPYFVAMVLAFFSN 506
S + +L+L+++++HY FAS +AH M L+V + G P + ++L
Sbjct: 376 --SPNATVIVLVLVFYFAHYLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIG 433
Query: 507 LMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGLW 562
+MG LT Y G + YG YV +W G I ++ I + L VG W + +W
Sbjct: 434 IMGCLTPYATGPGVIIYGCGYVKSKDYWRLGAIFGVIYISMLLLVG---WPILAMW 486
|
|
| TIGR_CMR|BA_2211 BA_2211 "sodium/solute symporter family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 175 (66.7 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 91/401 (22%), Positives = 153/401 (38%)
Query: 101 IASIATGLILWFVPV-PSGVSKNA-WQLLAIFLATIVGIIAQXXXXXXXXXXXXXXXXXT 158
+ +A LI+ V + PS ++ A W L F + I+ +
Sbjct: 24 VLPVALILIVEIVLLLPSSLTMEAKWSLFG-FCSAIILWTTTTINSAYIALGSVLFLIIS 82
Query: 159 KTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKXXXXXXXXXXXXXVF 218
T F + + WL+ +F R TGL ++ Y V +
Sbjct: 83 GTAKQDLLFDSLASDVIWLMIGSFILGRALQITGLAEKMTYFVVNRARNISGLCWILTMI 142
Query: 219 SEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSS 278
+ +LA IPS S RA + LP+ +++C GS ++ L + ++S+S
Sbjct: 143 IQ-ILAFFIPSTSGRAA-VVLPVFQAICKEIGSR-------RIAKALAILMPTVILVSTS 193
Query: 279 MFLTAMAANPLSATLTLNTINQP----IGWMDWAKAAXXXXXXXXXXXXXXXXXXXXXTV 334
+ A + L A LN N + W+ W V
Sbjct: 194 STIIG-AGSHLIALDMLNEFNNKNITFVEWLIWG-LPFGIIMSFISCRVILVLFLDKEEV 251
Query: 335 KSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILL 394
K+ KL Q+K++ +S NEK L+ V W+ ++ T I+G+ +L
Sbjct: 252 KT-----KLQQKKVKF--ELSRNEKYTISILIAMVAFWLTEWLHGLEIATVTIIGVFLLT 304
Query: 395 VT--GVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQ 452
+ GV+ WKE L + V+W+ + + A IA+ L + G W Q + V L ++ Q
Sbjct: 305 LPKLGVMQWKESL-KGVSWNLILFVGAAIALGKSLMESGAAQWIMQNLF-LVTEL-INKQ 361
Query: 453 LSFGIL---ILLYFYSHYFFASGAAHIGAMFTAFLSVASAL 490
F +L ++L SH + S L AS+L
Sbjct: 362 SIFIVLLVIVILSVTSHLYITSHTTRAVIFIPPLLYFASSL 402
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q57048 | Y020_HAEIN | No assigned EC number | 0.3481 | 0.8024 | 0.9415 | yes | no |
| Q9LXV3 | DIT1_ARATH | No assigned EC number | 0.8028 | 0.9804 | 0.9892 | yes | no |
| Q3YXI0 | TTDT_SHISS | No assigned EC number | 0.3353 | 0.8113 | 0.9363 | yes | no |
| Q31WX1 | TTDT_SHIBS | No assigned EC number | 0.3333 | 0.8113 | 0.9363 | yes | no |
| Q41364 | DIT1_SPIOL | No assigned EC number | 0.7731 | 0.9928 | 0.9806 | N/A | no |
| Q32BQ4 | TTDT_SHIDS | No assigned EC number | 0.3313 | 0.8113 | 0.9363 | yes | no |
| O34726 | YFLS_BACSU | No assigned EC number | 0.5292 | 0.8469 | 0.9958 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 562 | |||
| pfam00939 | 471 | pfam00939, Na_sulph_symp, Sodium:sulfate symporter | 0.0 | |
| TIGR00785 | 444 | TIGR00785, dass, anion transporter | 1e-154 | |
| COG0471 | 461 | COG0471, CitT, Di- and tricarboxylate transporters | 6e-84 | |
| cd00625 | 396 | cd00625, ArsB_NhaD_permease, Anion permease ArsB/N | 9e-36 | |
| cd01115 | 382 | cd01115, SLC13_permease, Permease SLC13 (solute ca | 2e-16 | |
| COG1055 | 424 | COG1055, ArsB, Na+/H+ antiporter NhaD and related | 2e-06 | |
| cd01116 | 413 | cd01116, P_permease, Permease P (pink-eyed dilutio | 3e-04 |
| >gnl|CDD|216206 pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region | Back alignment and domain information |
|---|
Score = 536 bits (1384), Expect = 0.0
Identities = 242/473 (51%), Positives = 321/473 (67%), Gaps = 6/473 (1%)
Query: 94 GAALKPLIASIATGLILWFVPVPSGVSKNAWQLLAIFLATIVGIIAQPLPLGAVALLGLG 153
+ L+A +A LI+WF+P P G+S AW L AIF+ATIVG+I +P+PLG +AL+ L
Sbjct: 1 KKLIWKLLALLAVLLIIWFLPAPDGLSSKAWHLFAIFIATIVGLITEPVPLGVIALMALS 60
Query: 154 AS-VLTKTLT--FSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSL 210
S VLT TL+ S A S F +P WL+ AFF A GF KTGLG RIA VK G S+L
Sbjct: 61 LSAVLTGTLSKALSWALSGFSNPTTWLVFGAFFIAAGFEKTGLGKRIALFLVKAMGKSTL 120
Query: 211 GLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCF 270
GLGY LVFS+ LLAPAIPS +ARAGGI PI+ SL A GS G+ K+G++LM T +
Sbjct: 121 GLGYGLVFSDLLLAPAIPSNTARAGGIVFPIIMSLPPAFGSTPEKGSPRKIGAYLMWTVY 180
Query: 271 QTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIY 330
Q++ I+S+MFLTAMA NPL+ L + I W W AAI PG++ L++VPLLLY +Y
Sbjct: 181 QSTSITSAMFLTAMAPNPLALGLANKILGNEISWASWFLAAIPPGVILLLLVPLLLYKLY 240
Query: 331 PPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGL 390
PP +KSSP+A + A+ +L++MGPM+ EK + G LL + LW+FGG L +D T AI+GL
Sbjct: 241 PPEIKSSPEAKRWAKTELKEMGPMTFREKALLGLFLLLLLLWIFGGSLGIDATTVAIIGL 300
Query: 391 SILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLS 450
S++L+ +V WK+ + AW+TL WF LIA+AG LN G I W T+V + GLS
Sbjct: 301 SLMLLLRIVDWKDIVKNKTAWNTLIWFGGLIALAGGLNNSGFIEWLGNTLVTSLS--GLS 358
Query: 451 WQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASAL-GCPPYFVAMVLAFFSNLMG 509
++F +++LL++ SHYFFAS AH AM FL+VA AL G PP A++L F S+L G
Sbjct: 359 PAMAFIVILLLFYLSHYFFASNTAHTAAMLPIFLAVAQALPGAPPLLAALLLGFASSLGG 418
Query: 510 GLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGLW 562
LT YG G AP+++G+ YVP+ WW GFI+SI+ +IIWL VG +WWK +GLW
Sbjct: 419 FLTPYGTGPAPIYFGSGYVPVKDWWRIGFILSIIGLIIWLLVGALWWKPLGLW 471
|
There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1. Length = 471 |
| >gnl|CDD|233126 TIGR00785, dass, anion transporter | Back alignment and domain information |
|---|
Score = 449 bits (1156), Expect = e-154
Identities = 199/447 (44%), Positives = 268/447 (59%), Gaps = 7/447 (1%)
Query: 114 PVPSGVSKNAWQLLAIFLATIVGIIAQPLPLGAVALLG-LGASVLTKTLT---FSAAFSA 169
PVP G++ AW LLAIF+A IVG I +PLPL ALL +VL L+ F A S
Sbjct: 1 PVPDGLNSGAWLLLAIFVAAIVGWILEPLPLPVTALLAIPIIAVLLGVLSAFKFKNALSG 60
Query: 170 FGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPS 229
F DP WL AF A +KTGLG RIAY+ V G ++LGLGY LVF E LLAP PS
Sbjct: 61 FADPTIWLFFGAFILATALVKTGLGKRIAYKLVGKMGGTTLGLGYFLVFLETLLAPMWPS 120
Query: 230 VSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPL 289
+ARAGGI LPI+KSL GS + + K+G +LML ++ I SS FLT A N L
Sbjct: 121 NTARAGGILLPIIKSLLPLLGSKP-EKSPRKIGKYLMLGIAYSASIGSSGFLTGSAPNAL 179
Query: 290 SATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLE 349
+A + + I W DW A + G++ L++VPLLLY+++PP +K + A+E+LE
Sbjct: 180 AAGILSKILGIQISWGDWFLAGLPLGIILLLLVPLLLYVLFPPELKLKDEVDLWAKEELE 239
Query: 350 KMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLAESV 409
+MGPMS EK + G LL + LW+FGG L ++ A+L + ++L G+VTWK+ V
Sbjct: 240 EMGPMSFREKALLGIFLLALLLWIFGGSLGINASVVALLAVVLMLFLGIVTWKDIQKNKV 299
Query: 410 AWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFF 469
AW+TL F LI +AG L K G I WFS+ +V + GLS ++ +L++L++ YFF
Sbjct: 300 AWNTLILFGGLIGLAGGLKKSGFIKWFSEKLVGILD--GLSPTIAVLVLVVLFYIILYFF 357
Query: 470 ASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVP 529
AS AH A+ F SVASA G P +A+ LA ++LMG LT Y + YG+ YV
Sbjct: 358 ASNTAHTAALVPIFFSVASAQGIPLELLALALALSASLMGFLTPYATPPNAIAYGSGYVK 417
Query: 530 LAKWWGYGFIVSIVNIIIWLGVGGVWW 556
+ W G I+ IV +I+ L VG +WW
Sbjct: 418 IKDMWRVGAIIGIVGLIVLLLVGTLWW 444
|
The Divalent Anion:Na+ Symporter (DASS) Family (TC 2.A.47) Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+ [Transport and binding proteins, Anions, Transport and binding proteins, Cations and iron carrying compounds]. Length = 444 |
| >gnl|CDD|223547 COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 268 bits (687), Expect = 6e-84
Identities = 162/469 (34%), Positives = 248/469 (52%), Gaps = 20/469 (4%)
Query: 99 PLIASIATGLILWFVPVPSGVSKNAWQLLAIFLATIVGIIAQPLPLGAVALLGLGASVLT 158
L+A + ++ PVP G+S AW L AI +A I+ I + +PL A+A+L + VL+
Sbjct: 7 DLLALLVLLALVLLGPVPFGLSGFAW-LFAILVAAIILWILEAIPLFALAILVIVLLVLS 65
Query: 159 ----KTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGY 214
A S F + WLI F ++G KTGLG R+A ++ FG++ GL
Sbjct: 66 GFILAISASKLALSGFANSTIWLIFGLFLLSKGLEKTGLGKRLALHLLRFFGTTPRGLAL 125
Query: 215 SLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSV 274
LV L+PA PS +A GGI LP++ SL GS K+G L+L +
Sbjct: 126 GLVLLTLFLSPAFPSNTA-TGGIMLPLILSLSPLLGSP----PRDKIGKRLILGIALAAN 180
Query: 275 ISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPP-T 333
I S++ N ++A L + W +W A + G++ L+++ LLLY ++PP
Sbjct: 181 IGSALTPIGNPPNIIAAGLLN---PISLSWGEWFLAMLPLGILLLLLLLLLLYKLFPPRE 237
Query: 334 VKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTA-AILGLSI 392
+K +P+ P A+ +L+++GP+ +EK++ G LL + LW+FG L T A++ +++
Sbjct: 238 IKETPNNPVAAKRELKELGPLLRDEKLLLGIFLLLLLLWIFGKLLGKIDATLIALIPVAL 297
Query: 393 LLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQ 452
LL+ GV+TWKE + + + W TL F LIA+ L+K G I W + + +GGLG
Sbjct: 298 LLLAGVLTWKE-VYKKIDWGTLILFGGLIALGSALSKTGAIAWIAGLLAGSLGGLGPFA- 355
Query: 453 LSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLT 512
+L+LL FAS A AM +++ASALG P + ++L S G LT
Sbjct: 356 --ILLLLLLLTLVLTLFASNTATAIAMVPIAIALASALGGAP-LLLLMLVAVSASGGFLT 412
Query: 513 HYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGL 561
G P+ G+ YV WW GFI+SIV II+ L +G +WW +GL
Sbjct: 413 PVGSPPNPIALGSGYVKFKDWWKVGFILSIVLIIVLLVIGLLWWPVLGL 461
|
Length = 461 |
| >gnl|CDD|238344 cd00625, ArsB_NhaD_permease, Anion permease ArsB/NhaD | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 9e-36
Identities = 98/425 (23%), Positives = 158/425 (37%), Gaps = 31/425 (7%)
Query: 134 IVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGL 193
V I + LP VALLG VL ++ A SA L+ + +TGL
Sbjct: 1 YVLIRPEKLPRAVVALLGAVLLVLLGVVSPKEALSAIDWETILLLFGMMILSAALEETGL 60
Query: 194 GNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNT 253
+R+A + + S L ++ + AL A S A A + ++ L S
Sbjct: 61 FDRLAAKLARASKGSRRLLLLLMLLTAALS--AFFSNDATAVLLTPIVLALLRKLGLSPP 118
Query: 254 GDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIV 313
L+L + I + N + A+L +G++D+
Sbjct: 119 ---------VPLLLALAFAANIGGAATPIGNPPNLIIASL------SGLGFLDFLAFMAP 163
Query: 314 PGLVSLIVVPLLLYIIYP-PTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLW 372
P L L+++ LLY+++ + D + E L + + LLL V L+
Sbjct: 164 PALGLLLLLLGLLYLLFRKKLLLPDEDKLTVLAEPLPARPLLKKFLLLALLLLLLFVLLF 223
Query: 373 VFGGRLNVDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGL 432
F L + + L +LL+ + +E L SV W TL +FA L + G L GL
Sbjct: 224 FFLIPLGL--IALLGALLLLLLLVRGLDPEEVLK-SVDWGTLLFFAGLFVLVGALESTGL 280
Query: 433 ITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGC 492
+ W ++ +V VG L LL S L +A++L
Sbjct: 281 LEWLAELLVALVGLPPL--------AALLLIGLLSALLSNFISNVPTVALLLPIAASLA- 331
Query: 493 PPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAK-WWGYGFIVSIVNIIIWLGV 551
PP + LA S L G LT G + + GA +G V + ++ L V
Sbjct: 332 PPEPAWLALALGSTLGGNLTLIGSLANLIPLGAAENAGVGISFGEFLKVGLPLTLLSLVV 391
Query: 552 GGVWW 556
++
Sbjct: 392 SLLYL 396
|
These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump. Length = 396 |
| >gnl|CDD|238535 cd01115, SLC13_permease, Permease SLC13 (solute carrier 13) | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 2e-16
Identities = 95/436 (21%), Positives = 164/436 (37%), Gaps = 60/436 (13%)
Query: 127 LAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFAR 186
LAI + V + + LPL ALL VL + AFS F DP L F
Sbjct: 1 LAILVFAAVLFVTEALPLDVTALLVPVLLVLLGVVPPKEAFSGFSDPAVILFLAGFILGA 60
Query: 187 GFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLC 246
+TGL RIA + +K G L L+ A L+ + + + A I LP+ L
Sbjct: 61 ALTRTGLAKRIATKLLKRAGKGERRLLLLLMLVTAFLSAFMSNTATVA--IMLPVALGLA 118
Query: 247 LACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMD 306
+ S L++ + I + L N +++ + Q + +
Sbjct: 119 AKLDIS---------PSRLLMPLAFAASIGGMLTLIGTPPNLVASGYLESLGGQGFSFFE 169
Query: 307 WAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLL 366
+ GL LI+ L L+ I+ V L+
Sbjct: 170 FTPI----GLPLLIIGLLYLWFIFRLAV------------------------------LI 195
Query: 367 LTVGLWVFG--GRLNVDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMA 424
+T+ L + A +G +L+ GV+ KE +S+ W + FA I +
Sbjct: 196 ITIVLLAALAAITGLLPVSVAIAIGAIVLVFGGVLLTKEDY-KSIDWGIIFLFAGGIPLG 254
Query: 425 GYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYF--FASGAAHIGAMFTA 482
L G ++ ++ +GGL F IL+LL + F S A +
Sbjct: 255 KALESSGAAALIAEALISLLGGLPP-----FAILLLLCLLTLVLTNFISNTATAVLLAPI 309
Query: 483 FLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAP--VFYGANYVPLAKWWGYGFIV 540
LS+A +LG PP + + +A ++ L +G+ P + G + + G +
Sbjct: 310 ALSIALSLGLPPEALLLAVAIGASCAFMLP---VGTPPNAIVLGPGGYKFSDFAKVGLPL 366
Query: 541 SIVNIIIWLGVGGVWW 556
SI+++++ + + + W
Sbjct: 367 SILSLVVSVTMIPLIW 382
|
The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices. Length = 382 |
| >gnl|CDD|223983 COG1055, ArsB, Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 90/443 (20%), Positives = 165/443 (37%), Gaps = 53/443 (11%)
Query: 126 LLAIFLATIVGIIAQP--LPLGAVALLGLGASVLTKTLTFSAAFSAFG---DPIPWLIAL 180
LA+F+ T+V ++ +P LP ALLG ++ +T A G + I L+
Sbjct: 6 ALALFIFTLVYVLIRPRKLPRAWAALLGALLALFLGIVTPEDALVVIGIDWNVILLLLG- 64
Query: 181 AFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLP 240
++G +A + VK S L L LV ALL+ + + + + P
Sbjct: 65 MMIIVLLLDESGFFEWLAIKMVKRSKGSGLKLLLLLVLLGALLSAFLDNDTTAL--LLTP 122
Query: 241 IVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQ 300
IV ++ A G N ++ + I N + A
Sbjct: 123 IVLAVARALGVNP---------VPFLIAEVFIANIGGLATPVGDPPNIIIA------SAA 167
Query: 301 PIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKI 360
I + D+ P L+SLI ++LY+++ V P+ + L + ++
Sbjct: 168 GISFNDFLANMFPPSLISLIATLVVLYLLFRRKV-----IPERYDDLLLLDPREAIRDRA 222
Query: 361 MAGTLLLTVGLWVFGGRLN----VDPVTAAILGLSILLVTGVVTWKE---CLAESVAWDT 413
+ L+ + L + L + A++G +ILL+ ++ +E + V W T
Sbjct: 223 LFKLSLVVLALVLIAFLLLPFLGIPVSLVALVGAAILLLLARLSPRESVNKILRGVEWST 282
Query: 414 LTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGA 473
L +F L + G L G+ + + G + L G L +S
Sbjct: 283 LLFFIGLFIVVGGLENAGVTEDLASVLKALSSGGLAAATLGIGWLSG-------LLSSVL 335
Query: 474 AHIGAMFTAFLSVASALGCPPYFVAMVLA--FFSNLMGGLTHYGIGSAP--VFYGA---- 525
++ + T + + LA ++L G LT IGSA V+ G
Sbjct: 336 DNVPTVLTFAPIIKGLAANGMGKEPLWLALALGADLGGNLTP--IGSAANLVWLGVLERK 393
Query: 526 -NYVPLAKWWGYGFIVSIVNIII 547
+ +++ G IV++ ++ I
Sbjct: 394 GVPISFGEFFKVGIIVTLPSLFI 416
|
Length = 424 |
| >gnl|CDD|238536 cd01116, P_permease, Permease P (pink-eyed dilution) | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 2/135 (1%)
Query: 314 PGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAG--TLLLTVGL 371
P +V +VV +L + + + LA +LE P+ ++ L L +
Sbjct: 171 PSVVLALVVTFILLYFLYRNILKAREEDVLALAELEPKYPIKDKVLLLKSLTILTLVIIG 230
Query: 372 WVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYG 431
+V L V A+LG +LL+ E + V WDTL +FA L + G L + G
Sbjct: 231 FVLHSPLGVSLGWIALLGALLLLLLADKLDFEDVLSRVEWDTLLFFAGLFVLVGGLEELG 290
Query: 432 LITWFSQTVVKFVGG 446
+I W ++ +V + G
Sbjct: 291 IIEWIAELLVGVILG 305
|
Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown, it was predicted to regulate the intraorganelle pH, together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains. Length = 413 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 562 | |||
| PF00939 | 471 | Na_sulph_symp: Sodium:sulfate symporter transmembr | 100.0 | |
| TIGR00785 | 444 | dass anion transporter. Functionally characterized | 100.0 | |
| COG0471 | 461 | CitT Di- and tricarboxylate transporters [Inorgani | 100.0 | |
| PRK15445 | 427 | arsenical pump membrane protein; Provisional | 100.0 | |
| cd01115 | 382 | SLC13_permease Permease SLC13 (solute carrier 13). | 100.0 | |
| cd01116 | 413 | P_permease Permease P (pink-eyed dilution). Mutati | 100.0 | |
| TIGR00935 | 429 | 2a45 arsenical pump membrane protein. | 100.0 | |
| cd01118 | 416 | ArsB_permease Anion permease ArsB. These permeases | 100.0 | |
| TIGR00774 | 515 | NhaB Na+/H+ antiporter NhaB. These proteins are me | 100.0 | |
| PRK09547 | 513 | nhaB sodium/proton antiporter; Reviewed | 100.0 | |
| PLN00136 | 482 | silicon transporter; Provisional | 100.0 | |
| COG1055 | 424 | ArsB Na+/H+ antiporter NhaD and related arsenite p | 100.0 | |
| cd01117 | 384 | YbiR_permease Putative anion permease YbiR. Based | 100.0 | |
| cd00625 | 396 | ArsB_NhaD_permease Anion permease ArsB/NhaD. These | 100.0 | |
| KOG1281 | 586 | consensus Na+/dicarboxylate, Na+/tricarboxylate an | 100.0 | |
| PLN00137 | 424 | NHAD transporter family protein; Provisional | 100.0 | |
| TIGR00775 | 420 | NhaD Na+/H+ antiporter, NhaD family. These protein | 100.0 | |
| KOG2639 | 685 | consensus Sodium sulfate symporter and related ars | 100.0 | |
| PF02040 | 423 | ArsB: Arsenical pump membrane protein; InterPro: I | 100.0 | |
| TIGR00784 | 431 | citMHS citrate transporter, CitMHS family. This fa | 99.97 | |
| PF03600 | 351 | CitMHS: Citrate transporter; InterPro: IPR004680 C | 99.97 | |
| PF06450 | 515 | NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterP | 99.96 | |
| TIGR00786 | 405 | dctM TRAP transporter, DctM subunit. force-depende | 99.94 | |
| PRK09412 | 433 | anaerobic C4-dicarboxylate transporter; Reviewed | 99.93 | |
| COG1288 | 481 | Predicted membrane protein [Function unknown] | 99.92 | |
| COG3067 | 516 | NhaB Na+/H+ antiporter [Inorganic ion transport an | 99.92 | |
| PRK11588 | 506 | hypothetical protein; Provisional | 99.91 | |
| PRK15060 | 425 | L-dehydroascorbate transporter large permease subu | 99.91 | |
| TIGR00770 | 430 | Dcu anaerobic c4-dicarboxylate membrane transporte | 99.9 | |
| COG1593 | 379 | DctQ TRAP-type C4-dicarboxylate transport system, | 99.88 | |
| PF06808 | 416 | DctM: DctM-like transporters; InterPro: IPR010656 | 99.87 | |
| PF03606 | 465 | DcuC: C4-dicarboxylate anaerobic carrier; InterPro | 99.86 | |
| COG2851 | 433 | CitM H+/citrate symporter [Energy production and c | 99.86 | |
| TIGR00771 | 388 | DcuC c4-dicarboxylate anaerobic carrier family pro | 99.84 | |
| PRK10654 | 455 | dcuC C4-dicarboxylate transporter DcuC; Provisiona | 99.84 | |
| PF02447 | 441 | GntP_permease: GntP family permease; InterPro: IPR | 99.83 | |
| TIGR02123 | 613 | TRAP_fused TRAP transporter, 4TM/12TM fusion prote | 99.82 | |
| TIGR00819 | 513 | ydaH p-Aminobenzoyl-glutamate transporter family. | 99.81 | |
| cd01116 | 413 | P_permease Permease P (pink-eyed dilution). Mutati | 99.81 | |
| PRK12489 | 443 | anaerobic C4-dicarboxylate transporter; Reviewed | 99.8 | |
| PRK14984 | 438 | high-affinity gluconate transporter; Provisional | 99.79 | |
| PRK10472 | 445 | low affinity gluconate transporter; Provisional | 99.79 | |
| cd01118 | 416 | ArsB_permease Anion permease ArsB. These permeases | 99.77 | |
| COG4664 | 447 | FcbT3 TRAP-type mannitol/chloroaromatic compound t | 99.75 | |
| PRK09821 | 454 | putative transporter; Provisional | 99.75 | |
| PLN00136 | 482 | silicon transporter; Provisional | 99.75 | |
| PF00939 | 471 | Na_sulph_symp: Sodium:sulfate symporter transmembr | 99.75 | |
| PRK11339 | 508 | abgT putative aminobenzoyl-glutamate transporter; | 99.74 | |
| PRK15445 | 427 | arsenical pump membrane protein; Provisional | 99.74 | |
| PRK10034 | 447 | fructuronate transporter; Provisional | 99.74 | |
| TIGR00791 | 440 | gntP gluconate transporter. This family includes k | 99.74 | |
| COG2610 | 442 | GntT H+/gluconate symporter and related permeases | 99.73 | |
| COG0471 | 461 | CitT Di- and tricarboxylate transporters [Inorgani | 99.72 | |
| TIGR00785 | 444 | dass anion transporter. Functionally characterized | 99.72 | |
| TIGR00935 | 429 | 2a45 arsenical pump membrane protein. | 99.71 | |
| cd01115 | 382 | SLC13_permease Permease SLC13 (solute carrier 13). | 99.7 | |
| PRK09804 | 455 | putative cryptic C4-dicarboxylate transporter DcuD | 99.7 | |
| PRK09921 | 445 | permease DsdX; Provisional | 99.66 | |
| TIGR00529 | 387 | AF0261 converved hypothetical integral membrane pr | 99.65 | |
| cd01117 | 384 | YbiR_permease Putative anion permease YbiR. Based | 99.64 | |
| PRK09547 | 513 | nhaB sodium/proton antiporter; Reviewed | 99.62 | |
| cd00625 | 396 | ArsB_NhaD_permease Anion permease ArsB/NhaD. These | 99.62 | |
| COG2056 | 444 | Predicted permease [General function prediction on | 99.62 | |
| COG1055 | 424 | ArsB Na+/H+ antiporter NhaD and related arsenite p | 99.6 | |
| PF02040 | 423 | ArsB: Arsenical pump membrane protein; InterPro: I | 99.56 | |
| PLN00137 | 424 | NHAD transporter family protein; Provisional | 99.53 | |
| PF03806 | 502 | ABG_transport: AbgT putative transporter family; I | 99.53 | |
| KOG2639 | 685 | consensus Sodium sulfate symporter and related ars | 99.53 | |
| PF03600 | 351 | CitMHS: Citrate transporter; InterPro: IPR004680 C | 99.5 | |
| PF03605 | 364 | DcuA_DcuB: Anaerobic c4-dicarboxylate membrane tra | 99.45 | |
| TIGR00775 | 420 | NhaD Na+/H+ antiporter, NhaD family. These protein | 99.45 | |
| TIGR00931 | 454 | antiport_nhaC Na+/H+ antiporter NhaC. A single mem | 99.45 | |
| PF04165 | 385 | DUF401: Protein of unknown function (DUF401) ; Int | 99.37 | |
| COG2978 | 516 | AbgT Putative p-aminobenzoyl-glutamate transporter | 99.33 | |
| COG3069 | 451 | DcuC C4-dicarboxylate transporter [Energy producti | 99.3 | |
| PF07158 | 149 | MatC_N: Dicarboxylate carrier protein MatC N-termi | 99.28 | |
| COG2704 | 436 | DcuB Anaerobic C4-dicarboxylate transporter [Gener | 99.23 | |
| TIGR00774 | 515 | NhaB Na+/H+ antiporter NhaB. These proteins are me | 99.16 | |
| KOG1281 | 586 | consensus Na+/dicarboxylate, Na+/tricarboxylate an | 99.15 | |
| COG1757 | 485 | NhaC Na+/H+ antiporter [Energy production and conv | 99.15 | |
| TIGR00366 | 438 | conserved hypothetical integral membrane protein. | 99.04 | |
| TIGR00784 | 431 | citMHS citrate transporter, CitMHS family. This fa | 99.0 | |
| PRK09412 | 433 | anaerobic C4-dicarboxylate transporter; Reviewed | 98.84 | |
| TIGR00786 | 405 | dctM TRAP transporter, DctM subunit. force-depende | 98.79 | |
| PF02652 | 522 | Lactate_perm: L-lactate permease; InterPro: IPR003 | 98.77 | |
| PRK12489 | 443 | anaerobic C4-dicarboxylate transporter; Reviewed | 98.73 | |
| PF02667 | 453 | SCFA_trans: Short chain fatty acid transporter; In | 98.66 | |
| COG4666 | 642 | TRAP-type uncharacterized transport system, fused | 98.65 | |
| PF07158 | 149 | MatC_N: Dicarboxylate carrier protein MatC N-termi | 98.59 | |
| TIGR00770 | 430 | Dcu anaerobic c4-dicarboxylate membrane transporte | 98.57 | |
| PRK10420 | 551 | L-lactate permease; Provisional | 98.56 | |
| COG1906 | 388 | Uncharacterized conserved protein [Function unknow | 98.55 | |
| TIGR00795 | 530 | lctP L-lactate transport. The only characterized m | 98.5 | |
| PRK09695 | 560 | glycolate transporter; Provisional | 98.48 | |
| COG1620 | 522 | LldP L-lactate permease [Energy production and con | 98.39 | |
| PRK10654 | 455 | dcuC C4-dicarboxylate transporter DcuC; Provisiona | 98.21 | |
| PF07854 | 347 | DUF1646: Protein of unknown function (DUF1646); In | 98.15 | |
| TIGR00791 | 440 | gntP gluconate transporter. This family includes k | 98.1 | |
| PF03553 | 303 | Na_H_antiporter: Na+/H+ antiporter family; InterPr | 98.02 | |
| TIGR00931 | 454 | antiport_nhaC Na+/H+ antiporter NhaC. A single mem | 97.93 | |
| PF02447 | 441 | GntP_permease: GntP family permease; InterPro: IPR | 97.92 | |
| TIGR00819 | 513 | ydaH p-Aminobenzoyl-glutamate transporter family. | 97.9 | |
| PRK10034 | 447 | fructuronate transporter; Provisional | 97.87 | |
| PRK11339 | 508 | abgT putative aminobenzoyl-glutamate transporter; | 97.84 | |
| PRK11588 | 506 | hypothetical protein; Provisional | 97.82 | |
| PF07399 | 438 | DUF1504: Protein of unknown function (DUF1504); In | 97.82 | |
| TIGR00771 | 388 | DcuC c4-dicarboxylate anaerobic carrier family pro | 97.81 | |
| COG1593 | 379 | DctQ TRAP-type C4-dicarboxylate transport system, | 97.73 | |
| COG1288 | 481 | Predicted membrane protein [Function unknown] | 97.73 | |
| PF03605 | 364 | DcuA_DcuB: Anaerobic c4-dicarboxylate membrane tra | 97.72 | |
| PRK15060 | 425 | L-dehydroascorbate transporter large permease subu | 97.72 | |
| PRK10472 | 445 | low affinity gluconate transporter; Provisional | 97.71 | |
| PF03606 | 465 | DcuC: C4-dicarboxylate anaerobic carrier; InterPro | 97.68 | |
| PRK09821 | 454 | putative transporter; Provisional | 97.65 | |
| PRK14984 | 438 | high-affinity gluconate transporter; Provisional | 97.64 | |
| TIGR00529 | 387 | AF0261 converved hypothetical integral membrane pr | 97.61 | |
| COG2610 | 442 | GntT H+/gluconate symporter and related permeases | 97.57 | |
| PRK09804 | 455 | putative cryptic C4-dicarboxylate transporter DcuD | 97.53 | |
| PF06808 | 416 | DctM: DctM-like transporters; InterPro: IPR010656 | 97.5 | |
| COG2851 | 433 | CitM H+/citrate symporter [Energy production and c | 97.47 | |
| PF03553 | 303 | Na_H_antiporter: Na+/H+ antiporter family; InterPr | 97.46 | |
| PF06166 | 308 | DUF979: Protein of unknown function (DUF979); Inte | 97.4 | |
| PF03806 | 502 | ABG_transport: AbgT putative transporter family; I | 97.36 | |
| PRK09921 | 445 | permease DsdX; Provisional | 97.34 | |
| TIGR02123 | 613 | TRAP_fused TRAP transporter, 4TM/12TM fusion prote | 97.33 | |
| COG2056 | 444 | Predicted permease [General function prediction on | 97.2 | |
| COG2031 | 446 | AtoE Short chain fatty acids transporter [Lipid me | 97.15 | |
| COG1757 | 485 | NhaC Na+/H+ antiporter [Energy production and conv | 96.99 | |
| PF06149 | 218 | DUF969: Protein of unknown function (DUF969); Inte | 96.87 | |
| COG2978 | 516 | AbgT Putative p-aminobenzoyl-glutamate transporter | 96.25 | |
| PF04165 | 385 | DUF401: Protein of unknown function (DUF401) ; Int | 96.14 | |
| COG3817 | 313 | Predicted membrane protein [Function unknown] | 95.96 | |
| COG2704 | 436 | DcuB Anaerobic C4-dicarboxylate transporter [Gener | 95.47 | |
| PF02652 | 522 | Lactate_perm: L-lactate permease; InterPro: IPR003 | 95.36 | |
| COG4664 | 447 | FcbT3 TRAP-type mannitol/chloroaromatic compound t | 95.31 | |
| COG3069 | 451 | DcuC C4-dicarboxylate transporter [Energy producti | 94.96 | |
| PRK10420 | 551 | L-lactate permease; Provisional | 94.46 | |
| TIGR00366 | 438 | conserved hypothetical integral membrane protein. | 94.44 | |
| PRK09695 | 560 | glycolate transporter; Provisional | 94.23 | |
| TIGR00795 | 530 | lctP L-lactate transport. The only characterized m | 93.74 | |
| COG1620 | 522 | LldP L-lactate permease [Energy production and con | 93.55 | |
| PF07854 | 347 | DUF1646: Protein of unknown function (DUF1646); In | 93.52 | |
| PF07399 | 438 | DUF1504: Protein of unknown function (DUF1504); In | 93.29 | |
| PF06166 | 308 | DUF979: Protein of unknown function (DUF979); Inte | 92.58 | |
| PF06450 | 515 | NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterP | 92.53 | |
| COG3819 | 229 | Predicted membrane protein [Function unknown] | 92.2 | |
| COG4756 | 367 | Predicted cation transporter [General function pre | 92.17 | |
| PF02667 | 453 | SCFA_trans: Short chain fatty acid transporter; In | 90.23 | |
| COG3493 | 438 | CitS Na+/citrate symporter [Energy production and | 87.8 | |
| PF13726 | 88 | Na_H_antiport_2: Na+-H+ antiporter family | 80.36 | |
| COG3817 | 313 | Predicted membrane protein [Function unknown] | 80.19 |
| >PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-64 Score=542.77 Aligned_cols=466 Identities=33% Similarity=0.587 Sum_probs=429.8
Q ss_pred hhhHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCH---HHHHhhcC
Q 008538 95 AALKPLIASIATGLILWFVPVPSGVSKNAWQLLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTF---SAAFSAFG 171 (562)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~p~~~~lt~~~~~~l~i~~~~i~lw~~~~i~~~~~all~~~~l~~~g~~~~---~~v~~~~~ 171 (562)
||++.+++.+++.+.+++.|.|++++.+++.++++++.++++|++|.+|..+++++.+.++..++..++ +++++++.
T Consensus 2 k~~~~~~~~~~i~~~i~~lp~p~~l~~~~~~~l~i~~~~ii~w~te~iP~~vtal~~~~l~~~~~~~~~~~~~~~~s~f~ 81 (471)
T PF00939_consen 2 KKWIKLIIALAIFLIIWLLPAPEGLSPQGMRCLAIFLFAIILWITEAIPLPVTALLIIILLPVLGGVDPVAAKEAFSGFG 81 (471)
T ss_pred ccHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccccccHHHHHHHHc
Confidence 567888999999989999999999999999999999999999999999999999999999977777776 99999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCC
Q 008538 172 DPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGS 251 (562)
Q Consensus 172 ~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~ 251 (562)
++++++++++++++.+++|||+.||++.++++++|++++.+.+.++....+++.+.++++++++.++.|+..+++++.|.
T Consensus 82 s~~v~li~g~f~i~~al~ktgL~~Ria~~~l~~~g~~~~~l~~~~~~~~~~l~~~~ps~~a~~~~i~~pi~~~i~~~~~~ 161 (471)
T PF00939_consen 82 SPTVWLIIGGFIIGAALEKTGLDKRIALWLLKRFGGSPKGLLFAIMLAGLLLSFFIPSTTARAAPILLPILLSICEALGS 161 (471)
T ss_pred CcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCchheehhHhhHHHHHHhccCccHHHHHHHHHHHHHHhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999887633466999999999999
Q ss_pred CCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Q 008538 252 NTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYP 331 (562)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~ 331 (562)
+++++++||+++.++++.+++++.||..+++|+++|++..+++++..|.+++|.||+.+++|++++..++.+++.++++|
T Consensus 162 ~~~~~~~~~~~~~l~l~~~~~a~~~g~~~~~g~~~n~i~~~~l~~~~g~~isf~~w~~~~~p~~ii~~~~~~~~~~~l~~ 241 (471)
T PF00939_consen 162 KPSSKTPRNLGKALMLGIAFAASIGGMGTLTGSAPNLIAAGFLESATGISISFLDWFIYALPPGIIMLVLMWLILYKLFK 241 (471)
T ss_pred hhhhhHHHHHHHHHHHHHhhhccccccccccCCCchHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88765667899999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred CCCCCCCChhHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhcCCChHHHHhccCCh
Q 008538 332 PTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLAESVAW 411 (562)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~l~g~~~~~~~~~~~i~w 411 (562)
++.++.++.+|..+++++|.+|++++||+.+.++++++++|++++.||++.++++++++.++++.++++|||..++++||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~lg~~s~~Ek~~~~i~~~~i~lw~~~~~~~i~~~~va~~~~~ll~~~~il~~~d~~~~~i~W 321 (471)
T PF00939_consen 242 PDVKNLPDGKEFIKKELKELGPMSKKEKKVLVIFLLTILLWITESFHGIDPAIVALLGAVLLFLPGILTWKDAAQKKIPW 321 (471)
T ss_pred cccccchhhHHHHHHHHHhcCCCchhHhhhhhhhhhhhhcccCcccCCCCHHHHHHHHHHHHHHHHhccHHHHHhcCCCc
Confidence 98877667788889999999999999999999999999999999999999999999999999999999999866689999
Q ss_pred hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHc-
Q 008538 412 DTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASAL- 490 (562)
Q Consensus 412 ~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~- 490 (562)
+++++++|+++++.+++++|+.+|+++.+.+.+++.++ ...+..+..+..+.+++++||+++..++.|++.+++...
T Consensus 322 ~~l~~~~g~~~lg~~l~~sG~~~~la~~l~~~l~~~~~--~~~~~~i~~~~~~~~~~~~s~~a~~~il~Pi~~~~a~~~~ 399 (471)
T PF00939_consen 322 GTLFLFGGALSLGTALEKSGAAKWLANVLLPLLGGLSP--FLVVLVILLVTVLLLTNFMSNTATVAILIPIVISLAAALG 399 (471)
T ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcccccc--HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999885433 333334444455667899999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008538 491 GCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGLW 562 (562)
Q Consensus 491 Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~~~w~~~Gl~ 562 (562)
|.||....+.+++++++.++++|+++|+|.+.||.|+++.+|++|.|++.+++..++...+.++||+++|+|
T Consensus 400 g~~p~~~~l~~~~~~~~~~~~lP~~sp~~~i~~~~g~~~~~d~~k~G~~~~ii~~iv~~~~~~~~w~~iG~~ 471 (471)
T PF00939_consen 400 GINPLALALIVAFASSFAGFLLPYSSPPNAIAYGTGYYKFKDFIKYGFPLTIIAIIVIILVAYPYWKLIGLW 471 (471)
T ss_pred CCChHHHHHHHHHHhhhccccCCcCCcceeEEEcCCCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999988874599999999999999999999999999999999999999999999999999998
|
One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane |
| >TIGR00785 dass anion transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-53 Score=454.04 Aligned_cols=438 Identities=41% Similarity=0.730 Sum_probs=384.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHhccCChhHHHHHH-HHHHHhcCCCC---HHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 008538 114 PVPSGVSKNAWQLLAIFLATIVGIIAQPLPLGAVALLG-LGASVLTKTLT---FSAAFSAFGDPIPWLIALAFFFARGFI 189 (562)
Q Consensus 114 p~~~~lt~~~~~~l~i~~~~i~lw~~~~i~~~~~all~-~~~l~~~g~~~---~~~v~~~~~~~~i~~~~g~~~l~~~l~ 189 (562)
|.|++++++++..+++++.++++|+++++|.+++++++ ..++.++|..+ ++|++++++|+++++++++++++.+++
T Consensus 1 ~~~~~l~~~~~~~l~i~~~~i~~w~~~~~~~~~~a~~~~~~~l~l~g~~~~~~~~~~~~~~~~~~v~l~~~~~~i~~al~ 80 (444)
T TIGR00785 1 PVPDGLNSGAWLLLAIFVAAIVGWILEPLPLPVTALLAIPIIAVLLGVLSAFKFKNALSGFADPTIWLFFGAFILATALV 80 (444)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhccCCcchHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999996 88889999999 999999999999999999999999999
Q ss_pred HhCHHHHHHHHHHHHhCCCch-hHHHHHHHHhhhhhcccCchh-hhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHH
Q 008538 190 KTGLGNRIAYQFVKLFGSSSL-GLGYSLVFSEALLAPAIPSVS-ARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLML 267 (562)
Q Consensus 190 ~tGl~~~la~~l~~~~g~~~~-~~~~~l~~~~~~ls~~~~~~~-a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~ 267 (562)
++|+.||+++++.++.++++. .....+++.+.+.+.+.+|++ +.+ ++.|+..+++++.|.+| +++++|+.+.+++
T Consensus 81 ~tGl~~~ia~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~sn~ar~~~--i~~Pi~~~i~~~~g~~~-~~~~~~~~~~l~~ 157 (444)
T TIGR00785 81 KTGLGKRIAYKLVGKMGGTTLGLGYFLVFLETLLAPMWPSNTARAGG--ILLPIIKSLLPLLGSKP-EKSPRKIGKYLML 157 (444)
T ss_pred HcCchHHHHHHHHHHHCCCChHHHHHHHHHHHHHHhhCchHhHhHHH--HHHHHHHHHHHHhCCCC-CcccchHHHHHHH
Confidence 999999999999999877444 444466666677777777777 554 89999999999999988 3455677778888
Q ss_pred HHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHH
Q 008538 268 TCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEK 347 (562)
Q Consensus 268 ~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (562)
...++++.|+..+|+|+++|+++.++.++..|.+++|.||++.+.|+++++.++.+...++++|++.++.++.++..+++
T Consensus 158 ~~~~~a~~g~~~t~~g~~~n~i~~~~~~~~~g~~i~~~~~~~~~~p~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (444)
T TIGR00785 158 GIAYSASIGSSGFLTGSAPNALAAGILSKILGIQISWGDWFLAGLPLGIILLLLVPLLLYVLFPPELKLKDEVDLWAKEE 237 (444)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHHcCccccCCccHHHHHHHH
Confidence 88899999999999999999999999998889999999999999999999998888888899987665444444444566
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhcCCChHHHHhccCChhHHHHHHHHHHHHHHH
Q 008538 348 LEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYL 427 (562)
Q Consensus 348 ~~~~~~~~~~e~~~l~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~l~g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l 427 (562)
+++.+++++|||+.++++..++++|+++..++.+.++++++++.++.+.|..++||..+++++|+++++++|++.++.++
T Consensus 238 ~~~~~~~~~~e~~~l~v~~~~i~~~~~~~~~~~~~~~~al~~~~ll~~~g~~~~~~~~~~~v~w~~l~~~~g~~~l~~~l 317 (444)
T TIGR00785 238 LEEMGPMSFREKALLGIFLLALLLWIFGGSLGINASVVALLAVVLMLFLGIVTWKDIQKNKVAWNTLILFGGLIGLAGGL 317 (444)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHhCcccHHHHhhccCCcHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999998889999999999999888899999999863349999999999999999999
Q ss_pred HHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 008538 428 NKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNL 507 (562)
Q Consensus 428 ~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~ 507 (562)
+++|+.|++++++.+..++.+. ...+..+........+++.||++++.++.|++.+++++.|+||..+.++..+++++
T Consensus 318 ~~sG~~~~i~~~l~~~~~~~~~--~~~~l~~~~~~~~~~~~~~s~~~~~~i~~Pi~~~ia~~~G~~p~~~~~~~~~~~~~ 395 (444)
T TIGR00785 318 KKSGFIKWFSEKLVGILDGLSP--TIAVLVLVVLFYIILYFFASNTAHTAALVPIFFSVASAQGIPLELLALALALSASL 395 (444)
T ss_pred HHcCHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999988755432 22222333344445678999999999999999999999999999999999999998
Q ss_pred hhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008538 508 MGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWW 556 (562)
Q Consensus 508 ~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~~~w 556 (562)
+++++|+++++|.+.++.++++++|++|.+.|..++..++..++.++||
T Consensus 396 ~~~~tP~~s~~n~i~~~~g~~~~~~~~k~~~p~~l~~~~~~~~~~~~~w 444 (444)
T TIGR00785 396 MGFLTPYATPPNAIAYGSGYVKIKDMWRVGAIIGIVGLIVLLLVGTLWW 444 (444)
T ss_pred HHHhcCCCCCccceeecCCCccHHHHHHhHHHHHHHHHHHHHHHHHHhC
Confidence 6699999999999999999999999999999999999999999999987
|
Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+. |
| >COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=392.50 Aligned_cols=448 Identities=35% Similarity=0.622 Sum_probs=399.4
Q ss_pred HHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHhcCC----CCHHHHHhhcCCCH
Q 008538 99 PLIASIATGLILWFVPVPSGVSKNAWQLLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKT----LTFSAAFSAFGDPI 174 (562)
Q Consensus 99 ~~~~~~~~~~~~~~~p~~~~lt~~~~~~l~i~~~~i~lw~~~~i~~~~~all~~~~l~~~g~----~~~~~v~~~~~~~~ 174 (562)
..++...+.+.+++.|.|..++...+ ..++++..+..|++|++|...++++...+..+.+. .+.++++..+.+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~i~~~~~~~~~~ll~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 85 (461)
T COG0471 7 DLLALLVLLALVLLGPVPFGLSGFAW-LFAILVAAIILWILEAIPLFALAILVIVLLVLSGFILAISASKLALSGFANST 85 (461)
T ss_pred HHHHHHHHHHHHHHhcCccccCchHH-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhccccHHHHHHHhhccH
Confidence 34555555556788888777777777 78889999999999999999999999999999998 78899999999999
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhh-cccCchhhhhhhhhhHhHHHHHHHcCCCC
Q 008538 175 PWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLA-PAIPSVSARAGGIFLPIVKSLCLACGSNT 253 (562)
Q Consensus 175 i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls-~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~ 253 (562)
++.+++++.++.+++++|+.+|+++++.+++|++++++.+.++++.+++| ++.+|+.+.. ++.|+..++.+..|.++
T Consensus 86 I~l~~~~f~~s~~~~~~gl~~~la~~~l~~~~~~p~~l~~~l~~~~~~ls~~~~sntat~~--i~~piv~~~~~~~~~~~ 163 (461)
T COG0471 86 IWLIFGLFLLSKGLEKTGLGKRLALHLLRFFGTTPRGLALGLVLLTLFLSPAFPSNTATGG--IMLPLILSLSPLLGSPP 163 (461)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhCceecccchhH--hhHHhhhcchhhcCCCh
Confidence 99999999999999999999999999999999999999999999999999 7887777554 89999999999998876
Q ss_pred CCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCC-
Q 008538 254 GDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPP- 332 (562)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~- 332 (562)
+ +|.++.+.+....++++|+..+++|+++|.+..++.++. + ++|.||++.+.|+.++......++.|+.+|+
T Consensus 164 ~----~~~~~~l~~~i~~~~~ig~~~~~ig~~~N~i~~~~~~~~-~--~~~~~w~~~~~p~~iv~l~~~~li~~~~~~~~ 236 (461)
T COG0471 164 R----DKIGKRLILGIALAANIGSALTPIGNPPNIIAAGLLNPI-S--LSWGEWFLAMLPLGILLLLLLLLLLYKLFPPR 236 (461)
T ss_pred H----HHHHHHHHHHHHHHhHhhcccccccCCccHHHHHhhccc-C--CCHHHHHHHHhhHHHHHHHHHHHHHHhhcChH
Confidence 5 267778999999999999999999999999999887663 2 9999999999999999999999999999998
Q ss_pred CCCCCCChhHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHhcCCCCC-chHHHHHHHHHHHHHhcCCChHHHHhccCCh
Q 008538 333 TVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNV-DPVTAAILGLSILLVTGVVTWKECLAESVAW 411 (562)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~i~~~~i~l~i~~~~~~i-~~~~vali~~~ll~l~g~~~~~~~~~~~i~w 411 (562)
+.++.++.+...+++.++.++++++|+....++.++...|++++..+. +...+++++..++++.++.+|+|.+ +++||
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~w~~~~~~~~~~~~~~ali~~~~~~~~~vl~~~~~~-~~i~W 315 (461)
T COG0471 237 EIKETPNNPVAAKRELKELGPLLRDEKLLLGIFLLLLLLWIFGKLLGKIDATLIALIPVALLLLAGVLTWKEVY-KKIDW 315 (461)
T ss_pred hhccCcchHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHhHHHHH-HhCCc
Confidence 566667777778888888999999999999999999999999887764 6678899999999999999998876 89999
Q ss_pred hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcC
Q 008538 412 DTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALG 491 (562)
Q Consensus 412 ~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~G 491 (562)
+++++++|++.++.+++++|..+|+++.+.+..++.+ ...+.++..+....+++|.||++++..+.|+...+++..|
T Consensus 316 ~~lilf~g~i~l~~~l~~tG~~~~i~~~l~~~~~~~~---~~~il~~~~~~~~~~~~f~SntA~~~~m~Pi~~~ia~~l~ 392 (461)
T COG0471 316 GTLILFGGLIALGSALSKTGAIAWIAGLLAGSLGGLG---PFAILLLLLLLTLVLTLFASNTATAIAMVPIAIALASALG 392 (461)
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999888764 2333444555566788999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008538 492 CPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGL 561 (562)
Q Consensus 492 v~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~~~w~~~Gl 561 (562)
.+|..+.+..+.++++ ++++|+++++|.+++|.|+++++||.|.|.|++++..++.+...+.||+..|.
T Consensus 393 ~~p~~~~~~v~~~as~-~~~tpv~~~~n~iv~g~G~~k~~d~~~~G~~l~~v~~iv~i~~~~~~~~~~~~ 461 (461)
T COG0471 393 GAPLLLLMLVAVSASG-GFLTPVGSPPNPIALGSGYVKFKDWWKVGFILSIVLIIVLLVIGLLWWPVLGL 461 (461)
T ss_pred CCchHHHHHHHHHHhh-hhhcCCCCCCCceEECCCCccHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9997777777777776 89999999999999999999999999999999999999999999999998763
|
|
| >PRK15445 arsenical pump membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-43 Score=369.96 Aligned_cols=407 Identities=18% Similarity=0.158 Sum_probs=323.1
Q ss_pred HHHHHHHHHHHHHhcc--CChhHHHHHHHHHHHhcCCCCHHHHHh--hcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q 008538 126 LLAIFLATIVGIIAQP--LPLGAVALLGLGASVLTKTLTFSAAFS--AFGDPIPWLIALAFFFARGFIKTGLGNRIAYQF 201 (562)
Q Consensus 126 ~l~i~~~~i~lw~~~~--i~~~~~all~~~~l~~~g~~~~~~v~~--~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l 201 (562)
.++++++++++|++++ +|..++++++..++.++|+.+++|+++ +++|++++++.|++.++.+++|+|+.||+++++
T Consensus 3 ~l~i~~~~~~~~~~~~~~ip~~~~all~~~ll~~~gv~~~~~a~~~~~~~~~~i~l~~g~~vi~~~l~~tGl~~~ia~~~ 82 (427)
T PRK15445 3 AIAIFLLTLVLVIWQPKGLGIGWSALLGAVLALLTGVVSLGDVPVVWGIVWNATLTFIAIIIISLLLDEAGFFEWAALHV 82 (427)
T ss_pred HHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 5677888888898888 999999999999999999999999985 789999999999999999999999999999999
Q ss_pred HHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccc
Q 008538 202 VKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFL 281 (562)
Q Consensus 202 ~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~ 281 (562)
.++.+++++++...+++.+.++|.+++|+++++ ++.|+...++++.|.||++ . ...++..+++++.++..++
T Consensus 83 ~~~~~~~~~~l~~~~~~~~~~ls~~~sn~~~~~--i~~Pi~~~i~~~~g~~~~~-----~-~~~~~~~~~~a~~~~~~~~ 154 (427)
T PRK15445 83 ARWAKGNGRKLFVYIVLLGAAVAALFANDGAAL--ILTPIVLAMLLALGFSKKA-----T-LAFVMAAGFIADTASLPLV 154 (427)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHcCCCccc-----c-hHHHHHHHHHhcccccccc
Confidence 999988888899999999999999999998886 8999999999999998741 1 1344566778888998899
Q ss_pred cccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHhcCCCChhHHHH
Q 008538 282 TAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIM 361 (562)
Q Consensus 282 iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 361 (562)
+|+++|.+..++ .+++|.||++++.|++++++++.+.+.++++|++.++..+ ++..+++.++. +.+++++..
T Consensus 155 ig~~~N~i~~~~------~~i~f~d~~~~~~p~~ii~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~ 226 (427)
T PRK15445 155 VSNLVNIVSADY------FGIGFAEYASVMVPVNLVSLAASLLVLWLYFRKDIPKTYD-LELLKEPASAI-KDPALFKLG 226 (427)
T ss_pred cCCchHhhhhcc------CCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhCCcccc-cccccChhhhc-cCHHHHHHH
Confidence 999999887652 4799999999999999999988888888888876533211 11111111111 112334455
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHh----cCCChHHHHhccCChhHHHHHHHHHHHHHHHHHhCHHHHHH
Q 008538 362 AGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVT----GVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFS 437 (562)
Q Consensus 362 l~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~l~----g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~~~la 437 (562)
+.+++.+++.|...+.++++...++++++.++++. ++.++||.. +++||+++++++|++.++.+++++|+.||++
T Consensus 227 ~~~~~~~~~~~~~~~~l~i~~~~va~~~a~ll~~~~~~~~~~~~~~~~-~~v~W~~l~~~~g~~~l~~al~~tG~~~~la 305 (427)
T PRK15445 227 WIVLALLLVGYFVLEPLGIPVSAIAGVGALILLLVARRGHAINTKKVL-KGAPWQIVIFSLGMYLVVYGLRNAGLTDYLA 305 (427)
T ss_pred HHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhccCCCCHHHHH-HhCChHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 56666666666666777889888898888887763 678999987 7899999999999999999999999999999
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccc
Q 008538 438 QTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIG 517 (562)
Q Consensus 438 ~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~ 517 (562)
+.+.+. .+.++ . .............++++||++++.++ |+....++..|.+|....+++++++++++++||++++
T Consensus 306 ~~l~~~-~~~~~--~-~~~~~~~~~s~~lS~~~sN~p~~~~~-~~~i~~~~~~~~~~~~l~~al~~ga~~gg~~T~iGs~ 380 (427)
T PRK15445 306 GVLNYL-ADQGL--F-AATLGTGFLAAFLSSVMNNMPTVLIG-ALAIDGSNATGVIKEAMIYANVIGSDLGPKITPIGSL 380 (427)
T ss_pred HHHHHh-cCCCH--H-HHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHhccCCcchHHHHHHHHHHhcccCcccchhhhH
Confidence 998765 33222 2 22222223333456899999998864 5555555566777888888899999998899999999
Q ss_pred cchheec---CC--CcCHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008538 518 SAPVFYG---AN--YVPLAKWWGYGFIVSIVNIIIWLGVGGV 554 (562)
Q Consensus 518 ~n~i~~~---~g--~~~~~~~~k~g~~~~li~~vv~~~~~~~ 554 (562)
+|.+..+ .+ +++++||.|.|.|.+++.+++.....+.
T Consensus 381 an~i~~~~~~~~g~~i~f~~f~k~G~~~~~~~~~~~~~~l~~ 422 (427)
T PRK15445 381 ATLLWLHVLAQKGVKISWGYYFKVGIIITLPVLLVTLLALAL 422 (427)
T ss_pred HHHHHHHHHHHCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997543 22 3779999999999999998887665543
|
|
| >cd01115 SLC13_permease Permease SLC13 (solute carrier 13) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=357.69 Aligned_cols=379 Identities=22% Similarity=0.295 Sum_probs=326.8
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCC
Q 008538 128 AIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGS 207 (562)
Q Consensus 128 ~i~~~~i~lw~~~~i~~~~~all~~~~l~~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~ 207 (562)
++++.++++|++|++|.+.+++.++.++.++|..++||++++++|++++++.++++++++++++|+.||+++++.++.++
T Consensus 2 ~i~~~~i~~w~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~i~li~g~~~l~~~~~~tG~~~~la~~i~~~~~~ 81 (382)
T cd01115 2 AILVFAAVLFVTEALPLDVTALLVPVLLVLLGVVPPKEAFSGFSDPAVILFLAGFILGAALTRTGLAKRIATKLLKRAGK 81 (382)
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHHhCCCCHHHHHHHcCChHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchh
Q 008538 208 SSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAAN 287 (562)
Q Consensus 208 ~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n 287 (562)
+++.....+++...+++.+.+|+...+ ++.|+..+++++.|.||. .+.+...++++.|+..+|+|+++|
T Consensus 82 ~~~~~~~~~~~~~~~ls~~~s~~~~~~--i~~Pi~~~~~~~~g~~~~---------~~~l~~~~~~~~g~~~~p~g~~~n 150 (382)
T cd01115 82 GERRLLLLLMLVTAFLSAFMSNTATVA--IMLPVALGLAAKLDISPS---------RLLMPLAFAASIGGMLTLIGTPPN 150 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHcCCChh---------HHHHHHHHHHHhcccceecCCchH
Confidence 888888899999999999998877665 899999999999999874 566788889999999999999999
Q ss_pred HHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHhcCCCChhHHHHHHHHHH
Q 008538 288 PLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLL 367 (562)
Q Consensus 288 ~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~i~~~ 367 (562)
.+..++.++..+.++++.||++.+.|+.++++++..+. +...++..
T Consensus 151 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------------------------------~~~~~~~~ 196 (382)
T cd01115 151 LVASGYLESLGGQGFSFFEFTPIGLPLLIIGLLYLWFI----------------------------------FRLAVLII 196 (382)
T ss_pred HHHHHHHHHccCCCcCHHHHHHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHH
Confidence 99999988876678899999999998876655433222 12234455
Q ss_pred HHHHHHhcCC--CCCchHHHHHHHHHHHHHhcCCChHHHHhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc
Q 008538 368 TVGLWVFGGR--LNVDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVG 445 (562)
Q Consensus 368 ~i~l~i~~~~--~~i~~~~vali~~~ll~l~g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~ 445 (562)
.+++|++... .+.+....+.++..++.+.+..++||.. ++++|+++++++|++.++.+++++|+.|++++.+.+..+
T Consensus 197 ~i~l~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~-~~~~w~~l~~~~~~~~l~~~l~~~Gl~~~ia~~l~~~~~ 275 (382)
T cd01115 197 TIVLLAALAAITGLLPVSVAIAIGAIVLVFGGVLLTKEDY-KSIDWGIIFLFAGGIPLGKALESSGAAALIAEALISLLG 275 (382)
T ss_pred HHHHHHHHHHHcCcccHHHHHHHHHHHHHHHccCCHHHHH-HcCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhC
Confidence 5556665432 3467777888888888888999999986 689999999999999999999999999999999988665
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecC
Q 008538 446 GLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGA 525 (562)
Q Consensus 446 ~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~ 525 (562)
+.++ ......+.+... ..+++.||++.+.++.|++.+++++.|+||..+.+...++++. ++++|+++++|.+.++.
T Consensus 276 ~~~~--~~~~~~~~~~~~-~ls~~~sn~~~~~i~~Pi~~~~~~~~g~~p~~~~~~~~~~~~~-~~~tp~~~~~n~i~~~~ 351 (382)
T cd01115 276 GLPP--FAILLLLCLLTL-VLTNFISNTATAVLLAPIALSIALSLGLPPEALLLAVAIGASC-AFMLPVGTPPNAIVLGP 351 (382)
T ss_pred CCCH--HHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-HHcCccCCCCCeeeeCC
Confidence 4322 333333333333 3567889999999999999999999999999999999999887 79999999999999999
Q ss_pred CCcCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008538 526 NYVPLAKWWGYGFIVSIVNIIIWLGVGGVWW 556 (562)
Q Consensus 526 g~~~~~~~~k~g~~~~li~~vv~~~~~~~~w 556 (562)
++++++||+|.++|..++..++.....+.||
T Consensus 352 ~~i~~~~~~~~~~p~~i~~~~~~~~~~~~~~ 382 (382)
T cd01115 352 GGYKFSDFAKVGLPLSILSLVVSVTMIPLIW 382 (382)
T ss_pred CCccHHHHHHhCHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999988888887
|
The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices. |
| >cd01116 P_permease Permease P (pink-eyed dilution) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=367.30 Aligned_cols=396 Identities=22% Similarity=0.247 Sum_probs=332.0
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHhcCCCC----HHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Q 008538 130 FLATIVGIIAQPLPLGAVALLGLGASVLTKTLT----FSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLF 205 (562)
Q Consensus 130 ~~~~i~lw~~~~i~~~~~all~~~~l~~~g~~~----~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~ 205 (562)
|++++++|++|++|.+++++++..++.++|+.+ ++|++++++|++++++.+.+.++.+++++|+.||+++++.++.
T Consensus 1 ~~~~~~~~~~~~~p~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~tG~~~~la~~~~~~~ 80 (413)
T cd01116 1 FIITYALIIFEKVHRTVAALAGALWLVILGLATLSPDLETIVSWVDWETLALLLGMMIIVSILSETGVFEYLAIWAVKIS 80 (413)
T ss_pred ChHHHHHHHHccccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHh
Confidence 367899999999999999999999999999999 9999999999999999999999999999999999999999998
Q ss_pred CCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccc
Q 008538 206 GSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMA 285 (562)
Q Consensus 206 g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~ 285 (562)
++++..+...+++++.++|.+.+|+++.+ ++.|+..+++++.|.||. .++....++++.|+..+|+|++
T Consensus 81 ~~~~~~~~~~~~~~~~~ls~~~s~~~~~~--i~~pi~~~i~~~~g~~~~---------~~~~~~~~~a~~g~~~tp~g~~ 149 (413)
T cd01116 81 KGRPWRLLLLLGLLTAFLSAFLDNVTTVL--LMVPVTIRLCEVLGLNPV---------PVLISEVIAANIGGAATLIGDP 149 (413)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHcCCCCc---------cHHHHHHHHHHccchhhccCCc
Confidence 87888888899999999999998888775 899999999999999876 4666788899999999999999
Q ss_pred hhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHhcCCCChhH--HHHHH
Q 008538 286 ANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNE--KIMAG 363 (562)
Q Consensus 286 ~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--~~~l~ 363 (562)
+|.++.+ +.++++.||++.+.|.+++.++..++..++.+|++.++.++.++ ..+|.++.++.++++ +..+.
T Consensus 150 ~n~~~~~------~~~i~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 222 (413)
T cd01116 150 PNIMIGS------AAGLTFNDFLLHMLPSVVLALVVTFILLYFLYRNILKAREEDVL-ALAELEPKYPIKDKVLLLKSLT 222 (413)
T ss_pred hhhhhhc------cCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccchhHH-HhhccccccccCcHHHHHHHHH
Confidence 9998764 46799999999999999998888888888888876544322211 112223333333332 34566
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhcCC-ChHHHHhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 008538 364 TLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVV-TWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVK 442 (562)
Q Consensus 364 i~~~~i~l~i~~~~~~i~~~~vali~~~ll~l~g~~-~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~ 442 (562)
++..++..|..+...+++...+++++..++.+.+.. ++||+. ++++|+++++++|++.++.+++++|..|++++.+.+
T Consensus 223 i~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~i~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l~~ 301 (413)
T cd01116 223 ILTLVIIGFVLHSPLGVSLGWIALLGALLLLLLADKLDFEDVL-SRVEWDTLLFFAGLFVLVGGLEELGIIEWIAELLVG 301 (413)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHcCCCCHHHHH-HhCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 777788888888777788888999999888888876 999987 679999999999999999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchhe
Q 008538 443 FVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVF 522 (562)
Q Consensus 443 ~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~ 522 (562)
..++.+. .. +.... ......++|.||++++.++.|++.++++..|.+|....++++++++++++++|+++++|.+.
T Consensus 302 ~~~~~~~--~~-~~~~~-~~~~~~s~f~sn~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~a~~g~~~tp~gs~~n~i~ 377 (413)
T cd01116 302 VILGRIA--VA-VILIL-WISALLSAFIDNIPVTATMIPIVKDLASQLGIPLLPLWWALALGACLGGNGTLIGASANVVA 377 (413)
T ss_pred HhCCChH--HH-HHHHH-HHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccccccchHHHHH
Confidence 8776421 22 22222 22333467889999999999999999999999999999999999999889999999999998
Q ss_pred ecCC-----CcCHHHHHHHhHHHHHHHHHHH
Q 008538 523 YGAN-----YVPLAKWWGYGFIVSIVNIIIW 548 (562)
Q Consensus 523 ~~~g-----~~~~~~~~k~g~~~~li~~vv~ 548 (562)
++.+ +++++||+|++.|..++..+..
T Consensus 378 ~~~~~~~g~~~~~~~~~~~g~~~~i~~~~~~ 408 (413)
T cd01116 378 AGIAEQHGYKISFWEFLKVGFPIMLVSLILA 408 (413)
T ss_pred HHHHHHcCCCccHHHHHHHHHHHHHHHHHHH
Confidence 8542 3899999999999998876554
|
Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown, it was predicted to regulate the intraorganelle pH, together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains. |
| >TIGR00935 2a45 arsenical pump membrane protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=364.13 Aligned_cols=402 Identities=15% Similarity=0.126 Sum_probs=318.5
Q ss_pred HHHHHHHHHHHHHhccCChhHH--HHHHHHHHHhcCCCCHHHHH--hhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q 008538 126 LLAIFLATIVGIIAQPLPLGAV--ALLGLGASVLTKTLTFSAAF--SAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQF 201 (562)
Q Consensus 126 ~l~i~~~~i~lw~~~~i~~~~~--all~~~~l~~~g~~~~~~v~--~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l 201 (562)
.+++++.++++|++|++|.+.. ++++..++.++|..+++|+. .+++|++++++.++++++++++|+|+.||+++++
T Consensus 4 ~l~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~g~~~~~~~~~~~~~~~~~l~~~~g~~ii~~~l~~tGl~~~ia~~l 83 (429)
T TIGR00935 4 AGAIFLLTYVLVIWQPVGLTIGASASSGAALAILAGVVSRPDIPTVWGIVWNATATFFAVIIISLILDETGFFEWAAVHA 83 (429)
T ss_pred HHHHHHHHHHHHHheecchHHHHHHHHHHHHHHHHhcCCHHHHHHHHhhchhHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5678999999999998755544 44445677889999999874 3699999999999999999999999999999999
Q ss_pred HHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccc
Q 008538 202 VKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFL 281 (562)
Q Consensus 202 ~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~ 281 (562)
.++.|++++++.+.++..++++|.+++|+++.+ ++.|+...++++.|.||+ ..+...++++++||..+|
T Consensus 84 ~~~~~~~~~~l~~~~~~~~~~ls~~~~n~~~~~--i~~Pi~~~l~~~~~~~~~---------~~~~~~~~~a~~gg~~t~ 152 (429)
T TIGR00935 84 YRLSNGRGWLLFTFICLLGAVVSAFFANDGAAL--ILTPIVIAMCEVLGFNPR---------TILAFVVAAGFIADTASL 152 (429)
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHccchhhh--hHHHHHHHHHHHhCCCCc---------chHHHHHHHHHHhhHHhc
Confidence 999988999999999999999999999988876 899999999999999875 134567888999999999
Q ss_pred cccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHhcCCCChhH--H
Q 008538 282 TAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNE--K 359 (562)
Q Consensus 282 iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--~ 359 (562)
+|+++|++..+..+. .+++|.||++++.|++++.+++.+.+.++.+|++.++..+.+ +..++.++.++++ +
T Consensus 153 iG~~~n~i~~~~~~~---~~i~f~~f~~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 225 (429)
T TIGR00935 153 PLIVSNLVNIVSADY---FGLGFAEYTSHMLPGNILVLVATLLVLRLYFRNDIPKVYDLE----LLLAPKYAIKDPALFK 225 (429)
T ss_pred CCCCchhhhhhcccc---cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHccCCcccchh----hccCccccccCHHHHH
Confidence 999999998764322 479999999999999999888888888888887654322211 1111222333333 5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH----HhcCCChHHHHhccCChhHHHHHHHHHHHHHHHHHhCHHHH
Q 008538 360 IMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILL----VTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITW 435 (562)
Q Consensus 360 ~~l~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~----l~g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~~~ 435 (562)
+.+.+++.++++|.+++.++++....+..++.+.. ..++.|+||+. +++||+++++++|++.++.+++++|+.+|
T Consensus 226 ~~~~v~~~~i~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~-~~i~w~~l~~~~g~f~l~~~l~~tG~~~~ 304 (429)
T TIGR00935 226 KCWIVLVFLLVGFFVLEFLGIPVSAIAWIAALGAIALAILADAIDTEKVL-RGAPWQIVLFSAGMYLVVEGLKNLGLTEY 304 (429)
T ss_pred HHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHhcCCCCHHHHH-HhCCcHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 66778888888999888888776666555554332 24788999987 57999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH--cCCChHHHHHHHHHHHhhhhcccc
Q 008538 436 FSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASA--LGCPPYFVAMVLAFFSNLMGGLTH 513 (562)
Q Consensus 436 la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~--~Gv~p~~~~~~~~~~~~~~~~~tp 513 (562)
+++.+ +..++.+. ......+. ......+++.||++ .+.|++.+++.. .|.||....+++++++++++++||
T Consensus 305 la~~~-~~~~~~~~--~~~~~~~~-~~~~~ls~~~sN~~---~~~pi~~~i~~~~~~g~~~~~~~~~l~~~~~~gg~~tp 377 (429)
T TIGR00935 305 LGGIL-NVLEDRGL--WAAILGTG-FVSAFLSSIMNNMP---TMLVGALSIDQSSATGLPKEPMVYANVIGADLGPKITP 377 (429)
T ss_pred HHHHH-HHHhcCCH--HHHHHHHH-HHHHHHHHHHccHH---HHHHHHHHHhhccccccchhHHHHHHHHHHhcCcccCc
Confidence 99954 44444322 22222222 22334567889998 478999988764 589998888899999998889999
Q ss_pred cccccchheec----CCC-cCHHHHHHHhHHHHHHHHHHHHHHHH
Q 008538 514 YGIGSAPVFYG----ANY-VPLAKWWGYGFIVSIVNIIIWLGVGG 553 (562)
Q Consensus 514 ~~~~~n~i~~~----~g~-~~~~~~~k~g~~~~li~~vv~~~~~~ 553 (562)
+++++|.+.++ .|+ ++++||+|.|+|.+++..++.....+
T Consensus 378 ~gs~anli~~~~~~~~g~~~~~~df~k~g~~~~~~~~~i~~~~l~ 422 (429)
T TIGR00935 378 IGSLATLLWLHVLEQKGYKISWGYYFRTGIPMTIPVLFVTLAYLL 422 (429)
T ss_pred cccHHHHHHHHHHHHCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998765 444 78999999999999999888765443
|
|
| >cd01118 ArsB_permease Anion permease ArsB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=359.67 Aligned_cols=395 Identities=18% Similarity=0.171 Sum_probs=309.6
Q ss_pred HHHHHHHHHHHHHhcc--CChhHHHHHHHHHHHhcCCCCHHHHHhhc--CCCHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q 008538 126 LLAIFLATIVGIIAQP--LPLGAVALLGLGASVLTKTLTFSAAFSAF--GDPIPWLIALAFFFARGFIKTGLGNRIAYQF 201 (562)
Q Consensus 126 ~l~i~~~~i~lw~~~~--i~~~~~all~~~~l~~~g~~~~~~v~~~~--~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l 201 (562)
+++++++++++|+++. +|...+++++..++.++|+.++||+++++ +|++++++.+++.++.+++++|+.||+++++
T Consensus 2 ~l~i~~~~i~l~~~~~~~i~~~~~al~~~~ll~~~gv~~~~~~~~~~~~~~~~i~~~~g~~~i~~~l~~tGl~~~ia~~l 81 (416)
T cd01118 2 AIAIFVLTLVLVIWRPFGLPEAVWAVLGAVIALILGLVSPHDALEVWGIVWDVTLTLIGVILLSLLLDEEGFFEWVAALA 81 (416)
T ss_pred HHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHCCCCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 4677888899999984 89999999999999999999999999875 5999999999999999999999999999999
Q ss_pred HHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccc
Q 008538 202 VKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFL 281 (562)
Q Consensus 202 ~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~ 281 (562)
.++.+++++++...++.++.++|.+++|+++.+ ++.|+..+++++.|.||++ + ...++..+++++.|+..+|
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~~ls~~~sn~a~~~--~~~Pi~~~i~~~~g~~~~~---~---~~~l~~~~~~a~~g~~~tp 153 (416)
T cd01118 82 ARWARGSGRKLFTLIVLLGAAVTAFFANDGTAL--ILTPIVIALLRALGAKKNR---T---LPFLYACAFIADAASLPLP 153 (416)
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHcCCCccc---c---cHHHHHHHHHHcccccccc
Confidence 999888889999999999999999998888876 8999999999999998741 0 1344566788899999999
Q ss_pred cccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHhcCCCChhHHH-
Q 008538 282 TAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKI- 360 (562)
Q Consensus 282 iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~- 360 (562)
+|+++|.+..+. .+++|.||++.+.|++++++++.+.+.++++|+|.++..+.++ .+ .++.+.+||+
T Consensus 154 ig~~~n~i~~~~------~~i~~~~~~~~~~p~~li~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~ 221 (416)
T cd01118 154 ISNLVNIVTAGY------FGIGFTEYAALMFLPSIVSILATYVVLYLFFRRALPKRLETAS-----VK-KPSLAIKDPLL 221 (416)
T ss_pred cCCchHHHhHhc------cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccccccc-----cc-CccccccchHH
Confidence 999999988752 4799999999999999999988888888888876543221110 11 1112222332
Q ss_pred ---HHHHHHHHHHHHHhcCCCCCchHH-HHHHHHHHHHHhcC---CChHHHHhccCChhHHHHHHHHHHHHHHHHHhCHH
Q 008538 361 ---MAGTLLLTVGLWVFGGRLNVDPVT-AAILGLSILLVTGV---VTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLI 433 (562)
Q Consensus 361 ---~l~i~~~~i~l~i~~~~~~i~~~~-vali~~~ll~l~g~---~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~ 433 (562)
.+.++...+..+...+..+.++.. .+++++.++.+.+. +++||.. +++||+++++++|.+.++.+++++|+.
T Consensus 222 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~v~w~~ll~f~g~f~l~~al~~tG~~ 300 (416)
T cd01118 222 FGLAWTLLVLLVVSAFGVDILLIPPSFIAGVLALIFLLLARRGGAINPLKVL-KEAPWGVLLFSLGLYVVVFGLKNAGLT 300 (416)
T ss_pred HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCCCCCHHHHH-HhCCHHHHHHHHHHHHHHHHHHHcCHH
Confidence 223333334445555545554444 44455555555544 4899987 579999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccc
Q 008538 434 TWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTH 513 (562)
Q Consensus 434 ~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp 513 (562)
||+++.+.+..++. . . .............++++||.+++.++.|++.+ |.+|.....++.+++++++++||
T Consensus 301 ~~l~~~l~~~~~~~-~--~-~~~~~~~~~~~vls~~isNvp~~~l~~p~~~~-----~~~~~~~~~~l~~g~~~gg~~t~ 371 (416)
T cd01118 301 AILADLLNWLVSQG-L--L-AAILGVGLLAAFLSNVMNNLPAVLIGALALAA-----GHAPEALVYANLIGVDLGPKLTP 371 (416)
T ss_pred HHHHHHHHHHcCCC-H--H-HHHHHHHHHHHHHHHHHccHHHHHHHHHHHhc-----ccccHHHHHHHHHhcccCcccch
Confidence 99999998865432 1 2 22222223334457899999999999998765 67777777888999999889999
Q ss_pred cccccchheec-----CCCcCHHHHHHHhHHHHHHHHHHHHH
Q 008538 514 YGIGSAPVFYG-----ANYVPLAKWWGYGFIVSIVNIIIWLG 550 (562)
Q Consensus 514 ~~~~~n~i~~~-----~g~~~~~~~~k~g~~~~li~~vv~~~ 550 (562)
+++++|.+.++ .++++++||+|+|+|.+++..++...
T Consensus 372 ~gs~an~i~~~~~~~~~~~~~~~~f~k~g~~~~~~~l~~~~~ 413 (416)
T cd01118 372 IGSLATLLWLHVLRRKGIRVSWGYYLKVGLIVTPPVLVVTLA 413 (416)
T ss_pred HHHHHHHHHHHHHHHCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988653 24689999999999999998887654
|
These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. |
| >TIGR00774 NhaB Na+/H+ antiporter NhaB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=342.32 Aligned_cols=450 Identities=15% Similarity=0.106 Sum_probs=349.0
Q ss_pred hhhhccccccccccccCCCccccceeeeecccccccCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHhccCCCCCCHHH
Q 008538 44 LTQTNNLTFRNQYFLTNPSLKFKRLTVQASASAGAAVAPAPEQKPQQPWQGAALKPLIASIATGLILWFVPVPSGVSKNA 123 (562)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lt~~~ 123 (562)
|+++..++|.+||+..+|+|||..+... +++++.+. ...-|. ..+
T Consensus 1 m~~~~~~a~~~nflg~~p~wyk~~i~~f----------------------------l~~np~~~--~~~~p~-----~~g 45 (515)
T TIGR00774 1 MEISLGNAFIKNFLGKSPDWYKLAIIAF----------------------------LIINPIVF--FLISPF-----VAG 45 (515)
T ss_pred CCccHHHHHHHhccCCCchHHHHHHHHH----------------------------HHHhHHHH--HHhChH-----HHH
Confidence 5678899999999999999999966544 66666663 223453 889
Q ss_pred HHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 008538 124 WQLLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVK 203 (562)
Q Consensus 124 ~~~l~i~~~~i~lw~~~~i~~~~~all~~~~l~~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~ 203 (562)
|...+.|++++.+ ..+++|....+++++.. +.+|+.+++++++++.++.+++++++|+++++++++|+.++++.+++-
T Consensus 46 w~l~~efiftlam-alkcypl~pgglla~ea-~~iG~~s~~~v~~e~~~n~iVLfLg~FmVAga~fmk~Ll~~I~tklll 123 (515)
T TIGR00774 46 WLLVAEFIFTLAM-ALKCYPLQPGGLLAIEA-IAIGMTSAAHVKHELVANIEVLLLLVFMVAGIYFMKQLLLFIFTKLLL 123 (515)
T ss_pred HHHHHHHHHHHHH-HHhcCCCCCCcHHHHHH-HHHCCCCHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 88999999889888887 567999999999999999999999999999999999999999955555
Q ss_pred HhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHH------------HHHcCCCCCC----------Ccchhh
Q 008538 204 LFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSL------------CLACGSNTGD----------GTEHKL 261 (562)
Q Consensus 204 ~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i------------~~~~g~~~~~----------~~~~~~ 261 (562)
+.| ++..+.+.+++.++++|+|+||+++++ +++|+..++ +++.+.++++ ++.|+|
T Consensus 124 ~i~-Sk~~L~l~f~laaafLSaFLsnttvtA--vmIpVavgfy~~yh~~~s~~~~~~~d~~~d~~~~~~~~~~l~~fr~f 200 (515)
T TIGR00774 124 GIR-SKTLLSLAFCFAAAFLSAFLDALTVVA--VVISVAVGFYGIYHKVASGNPIGDHDHTDDDTITELTRDDLENFRAF 200 (515)
T ss_pred hCC-cHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHhHHhhhhhccCchhhcCCCccchhhhhhhhhHHHHHHH
Confidence 555 899999999999999999999999987 899999998 5555555443 245566
Q ss_pred hHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCC-CCh
Q 008538 262 GSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSS-PDA 340 (562)
Q Consensus 262 ~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~-~~~ 340 (562)
.+.++++.++++++||++||+|+|||+++.+.. +++|.+|+....|.++..+++...+++++.|.+...+ .+.
T Consensus 201 l~~LLM~~aiaAnLGGvlTpIGnPQNLiias~~------g~~F~~FF~~m~Pv~LP~lIilll~~~l~~~~~~~gyg~~l 274 (515)
T TIGR00774 201 LRSLMMHAGVGTALGGVMTMVGEPQNLIIADQA------GWLFGEFFLRMSPVTLPVFICGLLTCALVEKLKVFGYGEKL 274 (515)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCchHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccC
Confidence 668999999999999999999999999998763 2568888888888888888888877877777665443 223
Q ss_pred hHHHHHHH-----HhcCCCChhHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH----hcCCChH---HHHhcc
Q 008538 341 PKLAQEKL-----EKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLV----TGVVTWK---ECLAES 408 (562)
Q Consensus 341 ~~~~~~~~-----~~~~~~~~~e~~~l~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~l----~g~~~~~---~~~~~~ 408 (562)
+|.+|+.+ ++..++++++|..+++..+.-+..+.+-..|+. -++++|..++.+ .|+.|++ ++++|.
T Consensus 275 p~~v~~~l~~~~~~~~~~~~~~~~~~l~~q~~~~~~l~~~la~h~a--~vg~igl~vii~~t~~~g~~~eh~~g~af~ea 352 (515)
T TIGR00774 275 PDNVRQILVDFDREERKTRTNQDKIKLWVQALIAVWLIVALALHLA--AVGLIGLSVIILATSFTGVTDEHSIGKAFEES 352 (515)
T ss_pred CHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHhcCCcchhhhhHHHhhh
Confidence 33333322 234467889999999998887777766544443 366777655543 5777765 566777
Q ss_pred CChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 008538 409 VAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVAS 488 (562)
Q Consensus 409 i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~ 488 (562)
.|...++- -.|++..++-+..+.+-+-++....-++.. . ..+..... ..+.+.||.+.+.++.|++..+ .
T Consensus 353 lpftall~--vff~~vavi~~q~lf~p~i~~vl~~~~~~q----~-~~ilw~Sg--ilSa~IDNVP~vatmIPvIk~l-~ 422 (515)
T TIGR00774 353 LPFTALLA--VFFSVVAVIIDQELFSPIIDFVLAAEEKTQ----L-ALFYVFNG--LLSSISDNVFVGTVYINEAKAA-L 422 (515)
T ss_pred ccHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHcCCCccc----h-HHHHHHHH--HHHHhhccHHHHHHHHHHHHHH-H
Confidence 88776553 456777888888888888887776543321 1 12222222 2346999999999999999988 5
Q ss_pred HcCC-Ch---HHHHHHHHHHHhhhhcccccccccchheecC----C-CcCHHHHHHHhHHHHHHHHHHHHHH
Q 008538 489 ALGC-PP---YFVAMVLAFFSNLMGGLTHYGIGSAPVFYGA----N-YVPLAKWWGYGFIVSIVNIIIWLGV 551 (562)
Q Consensus 489 ~~Gv-~p---~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~----g-~~~~~~~~k~g~~~~li~~vv~~~~ 551 (562)
..|. ++ ..+..+++.+++++++.||+|+.+|.++.+. | +++++||+|+|+|.+++..++..+.
T Consensus 423 ~~G~~~~~~~~~LWWALALGA~LGGNaTpiGAsANLVv~~iA~k~G~rISF~~flK~GlP~TLvsliVs~ly 494 (515)
T TIGR00774 423 TEGLITREQFELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGRMVYMALPYTIVLAIVGLLG 494 (515)
T ss_pred hcCCCccccccHHHHHHHHhccccccccHHHHHHHHHHHHHHHhCCCCccHHHHHHHhHHHHHHHHHHHHHH
Confidence 6666 22 3455668889999999999999999987652 3 5999999999999999999887553
|
These proteins are members of the NhaB Na+:H+ Antiporter (NhaB) Family (TC 2.A.34). The only characterised member of this family is the Escherichia coli NhaB protein, which has 12 GES predicted transmembrane regions, and catalyses sodium/proton exchange. Unlike NhaA this activity is not pH dependent. |
| >PRK09547 nhaB sodium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=337.90 Aligned_cols=440 Identities=13% Similarity=0.105 Sum_probs=331.8
Q ss_pred hhhhccccccccccccCCCccccceeeeecccccccCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHhccCCCCCCHHH
Q 008538 44 LTQTNNLTFRNQYFLTNPSLKFKRLTVQASASAGAAVAPAPEQKPQQPWQGAALKPLIASIATGLILWFVPVPSGVSKNA 123 (562)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lt~~~ 123 (562)
|+++..++|.+||+..+|+|||..+... +++++.+. ...-|. ..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~--~~~~~~-----~a~ 45 (513)
T PRK09547 1 MEISLGRAFWKNFLGQSPDWYKLAIIAF----------------------------LIINPLIF--FLVSPF-----VAG 45 (513)
T ss_pred CCccHHHHHHHhccCCCchHHHHHHHHH----------------------------HHHhHHHH--HHhhhH-----HHH
Confidence 5688899999999999999999966544 66666653 222343 778
Q ss_pred HHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 008538 124 WQLLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVK 203 (562)
Q Consensus 124 ~~~l~i~~~~i~lw~~~~i~~~~~all~~~~l~~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~ 203 (562)
|..+..|++++.+ ..++.|...-+++++.. +++|..+++|+++++.+|...+++.++++++++.++|+.++++.++.+
T Consensus 46 ~~l~~~~i~~l~~-~~~~~pl~~~~~~a~~a-v~~Gv~s~~~a~~~f~~n~~vIlLL~fMVv~i~~~~gll~~v~~kil~ 123 (513)
T PRK09547 46 WLLVAEFIFTLAM-ALKCYPLQPGGLLAIEA-VFIGMTSPEHVYHEIAANLEVLLLLMFMVAGIYFMKQLLLFIFTKLLL 123 (513)
T ss_pred HHHHHHHHHHHHH-HHhccCCCchHHHHHHH-HHHCCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 8888878888887 77888887778888777 889999999999998777656666677799999999999999999999
Q ss_pred HhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHH-------------------HcCCCCC----CCcchh
Q 008538 204 LFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCL-------------------ACGSNTG----DGTEHK 260 (562)
Q Consensus 204 ~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~-------------------~~g~~~~----~~~~~~ 260 (562)
+.+ +++.+.+.+++.++++|+|++|+++++ ++.|+..++++ ..+.++. .++.+.
T Consensus 124 ~~~-s~~~Lll~~~l~aA~LSAFLdN~Tvva--v~iPV~l~~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~~~~~~p~p 200 (513)
T PRK09547 124 SIR-SKMLLSLAFCLAAAFLSAFLDALTVIA--VVISVAVGFYGIYHRVASGKGFSEDHDLTDDSHIDELYREDLEQFRA 200 (513)
T ss_pred hcC-CHHHHHHHHHHHHHHHHHHHhhHHHHH--hHHHHHHHHhhhhHHHHhccccccccccccccccchhhhhhhcccch
Confidence 974 689999999999999999999999987 89999996522 1222210 012455
Q ss_pred hhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHH-------cCCC
Q 008538 261 LGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYII-------YPPT 333 (562)
Q Consensus 261 ~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~-------~~~~ 333 (562)
+.+.+++..++++++||.+|++|+|||+++.+. .+++|.||+....|++++.+++...+++.+ ||++
T Consensus 201 fL~~Llmpla~asnlGGv~TLIG~PqNLiIas~------~g~~F~~F~~~~apv~lpvli~gll~~~l~~~~~~f~y~~~ 274 (513)
T PRK09547 201 FLRSLMMHAGVGTALGGVMTMVGEPQNLIIAKQ------AGWHFGEFFLRMAPVTVPVLICGLLTCLLVEKFRWFGYGAK 274 (513)
T ss_pred HHHHHHHHHHHHHHhhhheeccCCcHHHHHHHh------cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEeeccc
Confidence 667788889999999999999999999999862 247899999999999998888888877443 4433
Q ss_pred CCCCCChhHH-HHHHHHhcC-CCChhHHHHH-----HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhc---CCChHH
Q 008538 334 VKSSPDAPKL-AQEKLEKMG-PMSTNEKIMA-----GTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTG---VVTWKE 403 (562)
Q Consensus 334 ~~~~~~~~~~-~~~~~~~~~-~~~~~e~~~l-----~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~l~g---~~~~~~ 403 (562)
. ++..+. .++..++.+ +.+.++|..+ +++. .++... ++.+.++++++.++.+.+ ..+.|+
T Consensus 275 l---~~~~~~~l~~~~~~~~~~~~~~d~~~L~~~~l~~~~-li~~f~------l~~a~VaLiga~vill~~~~~~~~~e~ 344 (513)
T PRK09547 275 L---PEKVRQVLQDYDDQERAKRTRQDKAKLIVQALIGVW-LIVALA------LHLAEVGLIGLSVIILATAFTGVTDEH 344 (513)
T ss_pred c---chhHHHHhhhhhhccCcccccccHHHHHHHHHHHHH-HHHHHH------HhHHHHHHHHHHHHHHhhcccCCCHHH
Confidence 2 221111 111111111 2223333333 3333 222222 567889999998877765 566777
Q ss_pred HHhcc-----CChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 008538 404 CLAES-----VAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGA 478 (562)
Q Consensus 404 ~~~~~-----i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~i 478 (562)
.+ ++ +||+++ +.|.|.+.++++++|+.+.+++++.+..++.. ...+.... ...+.+.||.+.+.+
T Consensus 345 ~l-~~~~~~~v~w~tL--f~glFivV~~i~~~gl~~~i~~~~~~~~~~~~-----~~~~~~~s--gllSaiiDNVp~~~~ 414 (513)
T PRK09547 345 AI-GKAFEEALPFTAL--LTVFFAVVAVIIDQHLFAPIIQFVLQASEHAQ-----LSLFYIAN--GLLSSISDNVFVGTV 414 (513)
T ss_pred HH-hhCcCCCCChHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCh-----HHHHHHHH--HHHHHhhchHHHHHH
Confidence 66 44 999999 99999999999999999999999998876532 11222222 233569999999999
Q ss_pred HHHHHHHHHHHcCC-Ch---HHHHHHHHHHHhhhhcccccccccchhee-c---CC-CcCHHHHHHHhHHHHHHHHHHHH
Q 008538 479 MFTAFLSVASALGC-PP---YFVAMVLAFFSNLMGGLTHYGIGSAPVFY-G---AN-YVPLAKWWGYGFIVSIVNIIIWL 549 (562)
Q Consensus 479 l~Pi~~~~a~~~Gv-~p---~~~~~~~~~~~~~~~~~tp~~~~~n~i~~-~---~g-~~~~~~~~k~g~~~~li~~vv~~ 549 (562)
++|++.... ..|. ++ .....+++.+++++++.||+|+.+|.+.. + .+ +++++||.|.|+|.+++..++..
T Consensus 415 ~ip~v~~~~-~~g~~~~~~~~~L~~ALa~Ga~Lggn~T~iGasAnlv~~~~~~~~g~~isf~~~~k~glP~tlv~~~v~~ 493 (513)
T PRK09547 415 YINEAKAAL-ESGAISRKQFELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGRMVWMALPYTIVLTLVGL 493 (513)
T ss_pred HHHHHHHHH-hcCCCccccchHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHhCCCcccHHHHHHHhHHHHHHHHHHHH
Confidence 999999887 6676 22 35567788899999999999999999877 4 23 59999999999999999988875
Q ss_pred H
Q 008538 550 G 550 (562)
Q Consensus 550 ~ 550 (562)
+
T Consensus 494 ~ 494 (513)
T PRK09547 494 L 494 (513)
T ss_pred H
Confidence 5
|
|
| >PLN00136 silicon transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=336.11 Aligned_cols=386 Identities=13% Similarity=0.097 Sum_probs=297.5
Q ss_pred CChhHHHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhh
Q 008538 142 LPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEA 221 (562)
Q Consensus 142 i~~~~~all~~~~l~~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~ 221 (562)
++....++++..++.++|..+++|+++.++|++++++.|++.++.+++++|+.+++++++.++. ++++.+...++.+++
T Consensus 33 i~~~~~Allga~llll~g~~~~~~a~~~i~~~tl~ll~gmmii~~~L~~tG~~~~ia~~l~~~~-~~~~~ll~~l~~~ta 111 (482)
T PLN00136 33 IGRTAGALLSAVLMIVFHVISPDDAYASIDLPILGLLFATMVVGSYLKNAGMFKHLGRLLAWRS-QGGRDLLCRVCVVTA 111 (482)
T ss_pred ccHHHHHHHHHHHHHHhCCCCHHHHHHhCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhc-CChHHHHHHHHHHHH
Confidence 4667779999999999999999999999999999999999999999999999999999999875 446777888999999
Q ss_pred hhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCC
Q 008538 222 LLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQP 301 (562)
Q Consensus 222 ~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~ 301 (562)
++|++++|+++++ ++.|++..++++.|.+|. .+++..+++++.||..||+|+++|+++.+ +.+
T Consensus 112 ~lSafl~N~~t~l--lm~Piv~~la~~~~~~p~---------~~ll~la~aAn~Gg~~TpiG~p~Nlii~~------~~~ 174 (482)
T PLN00136 112 LASALFTNDTCCV--VLTEFVLELAAERNLPAK---------PFLLALASSANIGSSATPIGNPQNLVIAF------NSK 174 (482)
T ss_pred HHHHHhccHHHHH--HHHHHHHHHHHHcCCCcH---------HHHHHHHHHHHHhhhhhhccccchheeeC------CCC
Confidence 9999999999986 899999999999999875 57778999999999999999999999875 357
Q ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCCh----h--HHHH------------------------------
Q 008538 302 IGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDA----P--KLAQ------------------------------ 345 (562)
Q Consensus 302 is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~------------------------------ 345 (562)
++|.||++.+.|+.++++++...+.+++||++.+...+. + |..+
T Consensus 175 i~F~dF~~~~~P~~li~l~v~~~~l~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (482)
T PLN00136 175 ITFPKFLLGILPAMLAGMAVNMVMLLCMYWKDLDGGAELSVDGKQMEAVEEGRSPASAKSTKQQSPALLQAGLNGDGNGD 254 (482)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcccchhhhhhhcccccchhhhhhhhhhhhhhccccccccch
Confidence 999999999999999998888888888888766321110 0 0000
Q ss_pred -HHHHhcCCC----C-----hhHHHHHHH-HH-HHHHHHHhcCCCCCchHHHHHHHHHHHHHhcCCChHHHHhccCChhH
Q 008538 346 -EKLEKMGPM----S-----TNEKIMAGT-LL-LTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLAESVAWDT 413 (562)
Q Consensus 346 -~~~~~~~~~----~-----~~e~~~l~i-~~-~~i~l~i~~~~~~i~~~~vali~~~ll~l~g~~~~~~~~~~~i~w~~ 413 (562)
++..+.++. . .++|+.+.. +. ..+...+...+.|++..+++++++.++.+.+..+.+|++ +++||++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~i~~~~ll~~~~~~~v~~~~l~~f~~g~p~~~iAl~~a~~lll~~~~~~~~~l-~~v~W~~ 333 (482)
T PLN00136 255 MSSMMSENISTKHPWFMQCTEHRRKLFLKSFAYVVTVGMVVAYMVGLNMSWTAITTAIALVVVDFRDAEPCL-DTVSYSL 333 (482)
T ss_pred hHHHhhccccccccccccchhccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHH-HhCCCcH
Confidence 000011111 0 112222211 01 011111112236799999999999998888888999987 7899999
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCC
Q 008538 414 LTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCP 493 (562)
Q Consensus 414 ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~ 493 (562)
+++++|++.++.+++++|+.+++++.+.+..++.+ ....+.+.. .....++++||++.+.++.|++...+...+-+
T Consensus 334 Llff~GlFilv~~l~~tGl~~~i~~~l~~~~~~~~--~~~~~~~~~--~s~~lS~~isNvp~~~~m~p~v~~~~~~~~~~ 409 (482)
T PLN00136 334 LVFFSGMFITVSGFNKTGLPGAIWNFMAPYSKVNS--VGGISVLSV--IILLLSNLASNVPTVLLMGDEVAAAAALISPA 409 (482)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCh--HHHHHHHHH--HHHHHHHHhccHHHHHHHHHHHHHHhcccCCc
Confidence 99999999999999999999999999887654431 122222222 22334689999999999999988654433322
Q ss_pred -hHHHHHHHHHHHhhhhcccccccccchheecC-------C-CcCHHHHHHHhHHHHHHHHHHHHH
Q 008538 494 -PYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGA-------N-YVPLAKWWGYGFIVSIVNIIIWLG 550 (562)
Q Consensus 494 -p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~-------g-~~~~~~~~k~g~~~~li~~vv~~~ 550 (562)
+....++++++++++++.||+|+++|.+..+. | +++++||+|+|+|.++++.++...
T Consensus 410 ~~~~~~~~la~ga~lGGn~TliGs~ANli~~~~~~~~~~~G~~isf~~f~k~G~P~~l~~~~i~~~ 475 (482)
T PLN00136 410 AVTRSWLLLAWVSTVAGNLSLLGSAANLIVCEQARRAPRNAYDLTFWQHIVFGVPSTLIVTAIGIP 475 (482)
T ss_pred ccchHHHHHHHHHhhccceeeccchhHHHHHHHHHHhhccCCcccHHHHHHHhHHHHHHHHHHHHH
Confidence 12334557788899999999999999987652 3 399999999999999988877644
|
|
| >COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=317.85 Aligned_cols=401 Identities=21% Similarity=0.217 Sum_probs=330.3
Q ss_pred HHHHHHHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCHHHHHh--hcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 008538 125 QLLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFS--AFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFV 202 (562)
Q Consensus 125 ~~l~i~~~~i~lw~~~~i~~~~~all~~~~l~~~g~~~~~~v~~--~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~ 202 (562)
..+.++..+.+.|..+++|....+.++..+++.+|+.+++|+.+ ..+|++++++.+++.++..++++|+.|+.+.++.
T Consensus 7 ~~l~~~~l~~~~~~p~~~~~~~~a~~Ga~l~l~~giv~~~d~~~~~~i~~~~i~~l~~mmiiv~~l~~~G~Fe~~a~~~v 86 (424)
T COG1055 7 LALFIFTLVYVLIRPRKLPRAWAALLGALLALFLGIVTPEDALVVIGIDWNVILLLLGMMIIVLLLDESGFFEWLAIKMV 86 (424)
T ss_pred HHHHHHHHHHHhhhcCcCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 34566778888889999999999999999999999999999997 7899999999999999999999999999999999
Q ss_pred HHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhccccc
Q 008538 203 KLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLT 282 (562)
Q Consensus 203 ~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~i 282 (562)
++.+++++++.+.+.++++++|++++|+++.. ++.|+.+.++++.|.++. ...+...+++|.||..||+
T Consensus 87 ~~s~g~~~~L~~~l~ll~a~~SA~l~N~tt~L--lltPivl~~~~~~~~~~~---------p~l~~~~f~aN~gg~~t~i 155 (424)
T COG1055 87 KRSKGSGLKLLLLLVLLGALLSAFLDNDTTAL--LLTPIVLAVARALGVNPV---------PFLIAEVFIANIGGLATPV 155 (424)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHHcccceee--hhhhHHHHHHHHcCCCcc---------HHHHHHHHHHccccccccc
Confidence 99988999999999999999999999999987 899999999999999876 5666888999999999999
Q ss_pred ccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHhcCCCCh--hHHH
Q 008538 283 AMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMST--NEKI 360 (562)
Q Consensus 283 G~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~ 360 (562)
|+|+|.+...+ .+++|.||.....|++++++++...+.+++||++ +.++..+..+++ ++.+..+. --+.
T Consensus 156 Gdp~niii~~~------~gisF~~f~~~m~~p~l~~li~~~~vl~~~~~~~--~~~~~~~~~~~~-~~~~ai~~~~l~~~ 226 (424)
T COG1055 156 GDPPNIIIASA------AGISFNDFLANMFPPSLISLIATLVVLYLLFRRK--VIPERYDDLLLL-DPREAIRDRALFKL 226 (424)
T ss_pred CChHHHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hccccchhhccc-ChhcccccHHHHHH
Confidence 99999999764 4599999999999999999999998888888622 222222221111 11111111 1255
Q ss_pred HHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhcCCChHH----HHhccCChhHHHHHHHHHHHHHHHHHhCHHHHH
Q 008538 361 MAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKE----CLAESVAWDTLTWFAALIAMAGYLNKYGLITWF 436 (562)
Q Consensus 361 ~l~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~l~g~~~~~~----~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~~~l 436 (562)
...++..+.+.....+..+.+...++++++.++.+....+.+| ++ +++||++++|+.|.+.+.++++++|+.+.+
T Consensus 227 ~~~vl~~vli~f~~~~~~~i~~~~val~~a~ill~~~~~~~~~~~~~il-~~v~W~~l~Ff~Glfi~V~gl~~~Gv~~~l 305 (424)
T COG1055 227 SLVVLALVLIAFLLLPFLGIPVSLVALVGAAILLLLARLSPRESVNKIL-RGVEWSTLLFFIGLFIVVGGLENAGVTEDL 305 (424)
T ss_pred HHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHhccCcchhHHHhh-hcCChHHHHHHHHHHHHHHHHHHcChHHHH
Confidence 6677777777888888999999999999999888766566666 76 789999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhccccccc
Q 008538 437 SQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGI 516 (562)
Q Consensus 437 a~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~ 516 (562)
++.+....++... ...+....+...+ +.++||.+.+.++.|.+.......+.+ .....++++++++++++||+|+
T Consensus 306 a~~l~~~~~~~~~--~~~~~~~~~s~~l--Ssv~~NvP~vl~~~~~i~~~~~~~~~~-~~lw~A~a~Ga~lGgnlT~IGs 380 (424)
T COG1055 306 ASVLKALSSGGLA--AATLGIGWLSGLL--SSVLDNVPTVLTFAPIIKGLAANGMGK-EPLWLALALGADLGGNLTPIGS 380 (424)
T ss_pred HHHHHHHhcCCch--HHHHHHHHHHHHH--HHhhccchHHHHHHHHHHhhcccccch-HHHHHHHHHhCccccchhhhhh
Confidence 9999988765322 2233333333333 469999999999999887665544333 3455678889999999999999
Q ss_pred ccchheecC-----CCcCHHHHHHHhHHHHHHHHHHHHHH
Q 008538 517 GSAPVFYGA-----NYVPLAKWWGYGFIVSIVNIIIWLGV 551 (562)
Q Consensus 517 ~~n~i~~~~-----g~~~~~~~~k~g~~~~li~~vv~~~~ 551 (562)
.+|.+..+. -++|+.||+|.|.+.++..+++....
T Consensus 381 ~Anlv~~~i~~~~g~~is~~~f~k~g~~i~~~~l~i~~~~ 420 (424)
T COG1055 381 AANLVWLGVLERKGVPISFGEFFKVGIIVTLPSLFITLLY 420 (424)
T ss_pred HHHHHHHHHHHHCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998763 35999999999999999988887554
|
|
| >cd01117 YbiR_permease Putative anion permease YbiR | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=325.54 Aligned_cols=365 Identities=19% Similarity=0.206 Sum_probs=287.7
Q ss_pred cCChhHHHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHh
Q 008538 141 PLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSE 220 (562)
Q Consensus 141 ~i~~~~~all~~~~l~~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~ 220 (562)
++|..++++++..++.++|+.+++|++++++|++++++.|++.++.+++++|+.||+++++.++. ++++.+.+.+++.+
T Consensus 10 ~~~~~~~a~~~~~ll~~~g~~~~~~~~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~ia~~l~~~~-~~~~~l~~~~~~~~ 88 (384)
T cd01117 10 RLDRWAIALLGAALMLLFGVISLEDAPAAIDLDTIILLFGLMVVSAALELSGFFDALGSRILVKA-GSPRRLLFLLVLLS 88 (384)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCHHHHHHHcCHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999875 45677888999999
Q ss_pred hhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCC
Q 008538 221 ALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQ 300 (562)
Q Consensus 221 ~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~ 300 (562)
.++|.+++|+++.+ ++.|+..+++++.|.+|. .+++..+++++.||..+|+|+++|++..++ .
T Consensus 89 ~~ls~~~~n~~~~~--~~~Pi~~~l~~~~~~~~~---------~~~~~~~~aa~~g~~~tp~g~~~n~i~~~~------~ 151 (384)
T cd01117 89 GILSALLTNDTACL--VFTPIVLELARVAGLPPI---------PLLLALATAANIGSAATPIGNPQNLLIASE------S 151 (384)
T ss_pred HHHHHHHhhHHHHH--HHHHHHHHHHHHcCCCch---------hHHHHHHHHHHcccccccCCCchhhhhhcC------C
Confidence 99999999888765 899999999999998875 466678999999999999999999988652 4
Q ss_pred CccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHhcCCCChhHHH-HHHHHHHHHHHHHhcCCCC
Q 008538 301 PIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKI-MAGTLLLTVGLWVFGGRLN 379 (562)
Q Consensus 301 ~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~l~i~~~~i~l~i~~~~~~ 379 (562)
+++|.||++.++|++++++++..++.++++|++.++.++.++ .++.++.++++++ ..++++..+..|.... ..
T Consensus 152 ~i~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 225 (384)
T cd01117 152 GISFPFFLAAMAPLALLGLLLLLILLLVLFPGELKGLPLDKA-----TKEEGVGARKLAVKLLVLILLLLVAFLALL-GV 225 (384)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcccccccc-----cchhhcccHHHHHHHHHHHHHHHHHHHHHh-Cc
Confidence 699999999999999999888888888888876544332211 1234455555544 3444444444444432 22
Q ss_pred CchHHHHHHHHHHHHHhcCCChHHHHhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 008538 380 VDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILI 459 (562)
Q Consensus 380 i~~~~vali~~~ll~l~g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~ 459 (562)
.+...+++.++.++++.+ .++||.. +++||+++++++|++.++.+++++|..+++++.+... .....+..
T Consensus 226 ~~~~~~~~~~~~ll~~~~-~~~~~~l-~~i~w~~ll~f~g~f~l~~~l~~~g~~~~~~~~~~~~--------~~~~~~~~ 295 (384)
T cd01117 226 IPLWTAALVAAVLLLLTR-LKPRRVL-KKVDWGLLLFFAGLFILVGGFAQGLPLEGLSRLLPLL--------DSVLSLFL 295 (384)
T ss_pred cHHHHHHHHHHHHHHHhc-CCHHHHH-HhCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------HHHHHHHH
Confidence 344455566666666677 8899987 6799999999999999999999999999988877541 11112222
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCC-----CcCHHHHH
Q 008538 460 LLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGAN-----YVPLAKWW 534 (562)
Q Consensus 460 ~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g-----~~~~~~~~ 534 (562)
+ ....++++||++++.++.|+.... ++. ...++.+++++++++||+++++|.+.++.+ +++++||.
T Consensus 296 ~--~~~lS~~isN~p~~~~~~pi~~~~------~~~-~~~~l~~~~~~gg~~tpigs~an~i~~~~~~~~g~~~~~~~~~ 366 (384)
T cd01117 296 V--SIGLSQLISNVPAVLLLLPFLPSA------DEK-DWLLLAAGSTIAGNLTLLGSAANLIVAEAAERRGVRLSFGEFL 366 (384)
T ss_pred H--HHHHHHHhccHHHHHHHHHHHHhc------ccH-HHHHHHHHhhcccccchhhHHHHHHHHHHHHHCCCCCcHHHHH
Confidence 2 223457999999999999988654 222 235667788888999999999999999864 68999999
Q ss_pred HHhHHHHHHHHHHH
Q 008538 535 GYGFIVSIVNIIIW 548 (562)
Q Consensus 535 k~g~~~~li~~vv~ 548 (562)
|+|+|.+++..++.
T Consensus 367 k~g~~~~i~~~~~~ 380 (384)
T cd01117 367 KYGVPLTLLTAAIG 380 (384)
T ss_pred HHhhHHHHHHHHHH
Confidence 99999998777654
|
Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains. |
| >cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=330.09 Aligned_cols=384 Identities=25% Similarity=0.279 Sum_probs=297.1
Q ss_pred HHHHhccCChhHHHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHH
Q 008538 135 VGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGY 214 (562)
Q Consensus 135 ~lw~~~~i~~~~~all~~~~l~~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~ 214 (562)
++|++|++|...+++++..++.++|+.++||++++++|++++++.+++.++++++++|+.||+++++.++.++++.. ..
T Consensus 2 ilw~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~i~~~~g~~~l~~~l~~tG~~~~ia~~l~~~~~~~~~~-~~ 80 (396)
T cd00625 2 VLIRPEKLPRAVVALLGAVLLVLLGVVSPKEALSAIDWETILLLFGMMILSAALEETGLFDRLAAKLARASKGSRRL-LL 80 (396)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHHhcCCCHHHHHHHcCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCCchH-HH
Confidence 46899999999999999999999999999999999999999999999999999999999999999998887776666 66
Q ss_pred HHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCC-CCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHH
Q 008538 215 SLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNT-GDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATL 293 (562)
Q Consensus 215 ~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~-~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~ 293 (562)
.++....+++.+.+|+...+ ++.|+..+++++.|.++ . .+++...++++.|+..+|+|+++|.++.+
T Consensus 81 ~~~~~~~~ls~~~s~~~~~~--il~Pi~~~~~~~~g~~~~~---------~l~~~~~~~a~~g~~~tp~gs~~n~i~~~- 148 (396)
T cd00625 81 LLMLLTAALSAFFSNDATAV--LLTPIVLALLRKLGLSPPV---------PLLLALAFAANIGGAATPIGNPPNLIIAS- 148 (396)
T ss_pred HHHHHHHHHHHHHhchhhhh--hhHHHHHHHHHHhCCCCCc---------cHHHHHHHHHhccccccccCCCCceEEEe-
Confidence 67778888998988877665 89999999999999987 4 56778888999999999999999998875
Q ss_pred HhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHH-HHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q 008538 294 TLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKL-AQEKLEKMGPMSTNEKIMAGTLLLTVGLW 372 (562)
Q Consensus 294 l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~~l~i~~~~i~l~ 372 (562)
+.++++.||++++.|++++..+....+.++++|++.++.++.+++ .+++.++.++.+++|+..+.++.+.+..|
T Consensus 149 -----~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (396)
T cd00625 149 -----LSGLGFLDFLAFMAPPALGLLLLLLGLLYLLFRKKLLLPDEDKLTVLAEPLPARPLLKKFLLLALLLLLLFVLLF 223 (396)
T ss_pred -----CCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhccChhcccccHHHHHHHHHHHHHHHHH
Confidence 357899999999999999988888888888888766443322211 12333444455556655555555444444
Q ss_pred HhcCCCCCchHHHHHHHHHHHHHhcC--CChHHHHhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCch
Q 008538 373 VFGGRLNVDPVTAAILGLSILLVTGV--VTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLS 450 (562)
Q Consensus 373 i~~~~~~i~~~~vali~~~ll~l~g~--~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~ 450 (562)
... .+...++.++..++.+... .++||.. ++++|++++++++++.++.+++++|+.+|+++.+.+..++. +
T Consensus 224 ~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~i~w~~~~~~~~~~~l~~~l~~~G~~~~~a~~~~~~~~~~--~ 296 (396)
T cd00625 224 FFL----IPLGLIALLGALLLLLLLVRGLDPEEVL-KSVDWGTLLFFAGLFVLVGALESTGLLEWLAELLVALVGLP--P 296 (396)
T ss_pred HHH----HhHHHHHHHHHHHHHHHhcCCCCHHHHH-HhCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCC--h
Confidence 332 3455555666554444333 7899987 56999999999999999999999999999999999886522 1
Q ss_pred hHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCC----
Q 008538 451 WQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGAN---- 526 (562)
Q Consensus 451 ~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g---- 526 (562)
.... ..........+++.||++.+.++.|++.+++ ++.........+.++++.+++.++.+|.+.++..
T Consensus 297 -~~~~-~~~~~~~~~~s~~~~n~~~~~~~~Pi~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~a~~l~~~~~~~~~ 369 (396)
T cd00625 297 -LAAL-LLIGLLSALLSNFISNVPTVALLLPIAASLA-----PPEPAWLALALGSTLGGNLTLIGSLANLIPLGAAENAG 369 (396)
T ss_pred -HHHH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-----CchHHHHHHHHHhcccccccccccHHHHHHHHHHHHCC
Confidence 2222 2222233335689999999999999998876 3333334445555666677788888887776542
Q ss_pred -CcCHHHHHHHhHHHHHHHHHHHHH
Q 008538 527 -YVPLAKWWGYGFIVSIVNIIIWLG 550 (562)
Q Consensus 527 -~~~~~~~~k~g~~~~li~~vv~~~ 550 (562)
+++++||+|+|+|.+++..++...
T Consensus 370 ~~~~~~~~~k~g~~~~~~~~~~~~~ 394 (396)
T cd00625 370 VGISFGEFLKVGLPLTLLSLVVSLL 394 (396)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999888776543
|
These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump. |
| >KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=315.11 Aligned_cols=422 Identities=17% Similarity=0.189 Sum_probs=345.2
Q ss_pred HHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 008538 123 AWQLLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFV 202 (562)
Q Consensus 123 ~~~~l~i~~~~i~lw~~~~i~~~~~all~~~~l~~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~ 202 (562)
|.+.......+-..|++|.+|..+++++...++...|+.+.+|+-+++-.|+.+++.+..+++.+.|+.++.+|++.++.
T Consensus 41 e~~c~y~~~vm~~yw~~Ealpl~vtal~p~~l~p~~gi~~s~eva~~yf~d~~~l~~~~l~~A~AvE~~~Lh~riaL~~~ 120 (586)
T KOG1281|consen 41 EARCAYVILVMAVYWVTEALPLAVTALLPIVLFPFFGIVRSNEVANEYFKDTNLLFLGGLIMALAVEKCNLHKRIALKVL 120 (586)
T ss_pred HHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHhcCccHHHHHHHHHhhhhHHHhhhHHHHHHHHHhhhhHHHHHHHH
Confidence 56777778888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCC---------------------------C--
Q 008538 203 KLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSN---------------------------T-- 253 (562)
Q Consensus 203 ~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~---------------------------~-- 253 (562)
+..|.+|.++.+.++..+.++|++++|+..++ +|.|++.++.++.-.. |
T Consensus 121 ~~vg~~P~~l~lg~m~~taflsmwisntA~ta--mm~pi~~avL~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~vp~~ 198 (586)
T KOG1281|consen 121 RKVGVEPARLMLGFMGVTAFLSMWISNTATTA--MMIPIATAVLQELPSFNDEEQHRMLESVSHLWAVEAIPTSFLVPLL 198 (586)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHhcccchhhhhhhHHHhhcchhhhcCCcccCCcch
Confidence 99999999999999999999999999998886 8999999877654331 0
Q ss_pred --------CC------------------CcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhc---CCCccH
Q 008538 254 --------GD------------------GTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTI---NQPIGW 304 (562)
Q Consensus 254 --------~~------------------~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~---g~~is~ 304 (562)
++ +..+.+.+.+.+++++++.+||..+..|+.+|.+..+..+... ....+|
T Consensus 199 ~v~~~~~~~~~g~~~~~~~~~i~~~~~s~~~~~~~~g~~L~ia~Sa~igg~~titGT~pnlVll~~~~~~fp~s~~~~Nf 278 (586)
T KOG1281|consen 199 TVFFPILKDETGKPMSPTSSSILSTMWSSTIMLLLKGFTLGIAYSAYIGGTLTITGTAPNLVLLGNMNVRFPLSMWVSNF 278 (586)
T ss_pred hhcccccCCccCCCCCcchhhhhhhccchHHHHHHHHHHHHHHHHHhhcchhhhcCCCccHHHHHHHHHhccccccccch
Confidence 00 0011255778889999999999999999999999988777643 246889
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHcC-----CCCC----CC-CC----hhHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 008538 305 MDWAKAAIVPGLVSLIVVPLLLYIIYP-----PTVK----SS-PD----APKLAQEKLEKMGPMSTNEKIMAGTLLLTVG 370 (562)
Q Consensus 305 ~~~~~~~~~~~li~~~~~~~~~~~~~~-----~~~~----~~-~~----~~~~~~~~~~~~~~~~~~e~~~l~i~~~~i~ 370 (562)
..|+.+.+|+.+..+.+.+.+...+|- ++.. +. .+ .++..++++++.+|++..|+.+.++|++.+.
T Consensus 279 ~swl~Fs~ppmL~~L~~~w~~l~~lflG~~~~~~~~~~~s~~~s~q~~~a~~~i~~~y~~lG~~~~~e~~v~ilfil~v~ 358 (586)
T KOG1281|consen 279 ASWLFFSFPPMLRYLLASWPFLQALFLGIALAANIGGMSSPISSPQNIVAKKVIKPEYDGLGPMFFAEKPVFILFILLVW 358 (586)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhhhHhhhhhcCCCCCcCChHHHHHHHHhhHhhcccccchHHHHHHHHHHHHHHH
Confidence 999999999999888887766544332 1111 11 11 1233566788899999999999999999999
Q ss_pred HHHhcCCC-----------C--CchHHHHHHHHHHHHHh----------------------cCCChHHHHhccCChhHHH
Q 008538 371 LWVFGGRL-----------N--VDPVTAAILGLSILLVT----------------------GVVTWKECLAESVAWDTLT 415 (562)
Q Consensus 371 l~i~~~~~-----------~--i~~~~vali~~~ll~l~----------------------g~~~~~~~~~~~i~w~~ll 415 (562)
+|++.+.. + ..-..++.+..++++.. +..+|++. +++++|++++
T Consensus 359 lw~tr~p~~~pgw~~~f~~~~~~~d~t~~~~i~ilLf~lps~~~~f~~~~~~~~~p~~~~~~l~~w~~~-q~~fPWsIvl 437 (586)
T KOG1281|consen 359 LWFTRDPGFVPGWGDLFKPGFFQSDSTSVVIITILLFCLPSQIPGFGKSGFIAIIPIVVFFGLGLWKTV-QFTFPWSIVL 437 (586)
T ss_pred HHHhcCCCCccchHhhcCCccceehhhHHHHHHHHhheecccCccccccCcccccccccccCccchhhh-cccCCchHhh
Confidence 99986422 1 11223445555555431 24678885 4689999999
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChH
Q 008538 416 WFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPY 495 (562)
Q Consensus 416 ~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~ 495 (562)
+.+|+++++.+.+++|+.+|+++.+.+ +++.+. ..+.+++.+..+..+.|.||++++.+++|++.++++.+|.||.
T Consensus 438 LlgGGfALakgv~sSGLs~~I~~~L~~-l~~~p~---~~i~li~~ll~~v~TeF~Sntata~IfiPIl~ela~~l~~hpl 513 (586)
T KOG1281|consen 438 LLGGGFALAKGVSSSGLSSLIGNALKP-LESLPV---FAILLIFSLLILVVTEFVSNTATASIFIPILAELAEALGIHPL 513 (586)
T ss_pred hhccchhhhhhcccccHHHHHHHhhhh-cccCCh---HHHHHHHHHHHHHHHHHhcchhheeehHHhHHHHHHhcCCCCc
Confidence 999999999999999999999999998 676543 2233333344455689999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHH
Q 008538 496 FVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVG 552 (562)
Q Consensus 496 ~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~ 552 (562)
.+.++.++++++ +++.|.++|||.+++++++.+.+||+|.|..+++.+.+...+..
T Consensus 514 yl~lp~tl~~Sf-Af~LPvstpPNaivfs~~~~k~~dm~~~G~~l~i~~~a~l~~~m 569 (586)
T KOG1281|consen 514 YLMLPTTLACSF-AFMLPVSTPPNAIVFSMGDIKGKDMLKVGLFLNIGGPAILLLFM 569 (586)
T ss_pred eeehhHHHHHHH-HHhcCCCCCCCeEEEeecccchhhHhhhccchhHHHHHHHHHHH
Confidence 999999999997 99999999999999999999999999999999998877765543
|
|
| >PLN00137 NHAD transporter family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=296.04 Aligned_cols=388 Identities=13% Similarity=0.135 Sum_probs=290.2
Q ss_pred HHHHHHHHHHHHHHHHHHhc---cCChhHHHHHHHHHHHhcCCC---CHHHHHhhcC------CCHHHHHHHHHHHHHHH
Q 008538 121 KNAWQLLAIFLATIVGIIAQ---PLPLGAVALLGLGASVLTKTL---TFSAAFSAFG------DPIPWLIALAFFFARGF 188 (562)
Q Consensus 121 ~~~~~~l~i~~~~i~lw~~~---~i~~~~~all~~~~l~~~g~~---~~~~v~~~~~------~~~i~~~~g~~~l~~~l 188 (562)
.++...+.+|+.+..+.++| ++|....++.+..++.+++.. +.+++++..+ ++++.+++|++++++.+
T Consensus 3 ~~~~~~~~if~~~y~~i~~e~~~~i~~~~~al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~g~m~iv~~l 82 (424)
T PLN00137 3 NQGLAMALVFGAGYAGIIFEESLAFNKSGVALLMAVSLWVIRAIGAPSLEIVTLELRHALAEVSEIVFFLLGAMTIVEIV 82 (424)
T ss_pred cchhHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788899999999999 899999999999888777766 7788777788 89999999999999999
Q ss_pred HHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHH
Q 008538 189 IKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLT 268 (562)
Q Consensus 189 ~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~ 268 (562)
+++|+.|++++++.++ +++++.+.++++++++|++++|+++.+ ++.|+...++++. +|. +.....
T Consensus 83 ~~~g~f~~~a~~~~~~---~~~~l~~~~~~~~~~lS~~l~N~tt~l--~~~p~~~~~~~~~--~~~--------~~~~~~ 147 (424)
T PLN00137 83 DAHQGFKLVTDSITTR---SPRTLLWVVGFITFFLSSILDNLTTTI--VMVSLLRKLVPPS--EYR--------KLLGAV 147 (424)
T ss_pred HHcCcHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcc--cch--------HHHHHH
Confidence 9999999999999986 889999999999999999999999987 7999988877653 222 233456
Q ss_pred HHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHHH
Q 008538 269 CFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKL 348 (562)
Q Consensus 269 ~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (562)
.++++|+||..||+|+|||+++.+ ..++++.||+....+|.+++.++.+.+.++.+|++.+.. ... +.
T Consensus 148 ~~~aaNiGg~~TpiGnp~NllI~~------~~~lsf~~f~~~l~~P~li~~lv~~~i~~~~~~~~~~~~-~~~-----~~ 215 (424)
T PLN00137 148 VVVAANAGGAWTPIGDVTTTMLWI------HGQISTLPTMQGLFLPSAVSLAVPLALMSLTSEENGSPQ-DSS-----PL 215 (424)
T ss_pred HHHhccccceeccCCCcCeeeehc------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChh-hcc-----cc
Confidence 789999999999999999997764 136899998888888888877777777777777654221 100 01
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHH-HhcCCCCCchHHHHHHHHHHHHHh-----------cCCChHHHHhccCChhHHHH
Q 008538 349 EKMGPMSTNEKIMAGTLLLTVGLW-VFGGRLNVDPVTAAILGLSILLVT-----------GVVTWKECLAESVAWDTLTW 416 (562)
Q Consensus 349 ~~~~~~~~~e~~~l~i~~~~i~l~-i~~~~~~i~~~~vali~~~ll~l~-----------g~~~~~~~~~~~i~w~~ll~ 416 (562)
++.++.+++++....+++..+..+ +++...|+++.+.++.++.++.+. +..+++|.+ +++||+++++
T Consensus 216 ~~~~~~~~~~~l~~~l~i~~~~~~~~~~~~~gl~~~~~al~~~~~lll~~~~~~~~~~~~~~~~~~~~l-~~Vdw~tLlf 294 (424)
T PLN00137 216 LASEQMAPRGQLVFGVGVGALLFVPVFKALTGLPPYMGMLLGLGVLWILTDAIHYGESERQALKVPQAL-SRIDTQGILF 294 (424)
T ss_pred chhhhcccHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHhcccccccccCHHHHH-HhCCccHHHH
Confidence 111222333333333333333333 556677899998888777655543 236788887 7899999999
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCC---C
Q 008538 417 FAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGC---P 493 (562)
Q Consensus 417 ~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv---~ 493 (562)
++|.|.+.++++++|+.+++++.+.+..++ . . .+..+. ...+++.||.+.+..+.|+.. ..|. +
T Consensus 295 F~GlFilvgal~~tG~~~~la~~l~~~~~~--~--~---~i~~~s--~ilS~~IsNVP~~~~~~p~~~----~~~~~~~~ 361 (424)
T PLN00137 295 FLGILLSVGSLDAAGILRELANYLDANIPN--V--E---LIASAI--GVASAIIDNVPLVAATMGMYD----LTDYPMDS 361 (424)
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHhcCC--c--h---hHHHHH--HHHHHHhcchHHHHHHhhhhh----hccCCcch
Confidence 999999999999999999999998766433 1 1 122221 123578999999999999875 2333 3
Q ss_pred hHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHH
Q 008538 494 PYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGV 551 (562)
Q Consensus 494 p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~ 551 (562)
+.+ .+++++++.+|+.|++++.+|.++++..+-++.-.++..-|..++..+....+
T Consensus 362 ~~w--~aLalga~lGGn~tliGS~Anvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (424)
T PLN00137 362 ELW--QLIALCAGTGGSLLVIGSAAGVAFMGMEKVDFFWYLRKVSGFAFAGYVAGIAA 417 (424)
T ss_pred HHH--HHHHHHhCccchHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 444 55777888999999999999999988654333333444555666666555443
|
|
| >TIGR00775 NhaD Na+/H+ antiporter, NhaD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=285.79 Aligned_cols=379 Identities=14% Similarity=0.112 Sum_probs=285.3
Q ss_pred HHHHHHHHHHHHHHhc---cCChhHHHHHHHHHHHhcCCCCHHHH---H---hhcC-CCHHHHHHHHHHHHHHHHHhCHH
Q 008538 125 QLLAIFLATIVGIIAQ---PLPLGAVALLGLGASVLTKTLTFSAA---F---SAFG-DPIPWLIALAFFFARGFIKTGLG 194 (562)
Q Consensus 125 ~~l~i~~~~i~lw~~~---~i~~~~~all~~~~l~~~g~~~~~~v---~---~~~~-~~~i~~~~g~~~l~~~l~~tGl~ 194 (562)
.+..+|+.+..+.++| ++|...+++++..++.++|..+.+|+ + +..+ ++++.++.|++.+.+.++++|..
T Consensus 5 ~~~~if~~~y~~i~~e~~~~~~r~~~al~ga~~~~~~~~~~~~~~~~~~~~~~~~d~~~ti~~LfgmMiiv~~l~~~g~f 84 (420)
T TIGR00775 5 QLCLLFLFGYLTIVFEHIVRVNKSAIWLAMGGLMWLVCFSHIPDVDHAALEEEIADMAQVIFFLFVAMAIVELIDAHKGF 84 (420)
T ss_pred HHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCCcH
Confidence 3567899999999999 89999999999999999999998886 4 5567 89999999999999999999999
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHH--HHHH
Q 008538 195 NRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLT--CFQT 272 (562)
Q Consensus 195 ~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~--~~~~ 272 (562)
++++.++.++.+ +++.+.++++++++|++++|+++.. ++.|+...+++ .+|. .+.++ .+++
T Consensus 85 ~~la~~l~~~s~---r~Ll~~l~l~t~~lSa~LdN~tt~l--l~~Pv~l~i~~---~~~~---------~~ll~~~i~~A 147 (420)
T TIGR00775 85 SALVAWCVGKSR---KKLLWLLGFLSFFLSAALDNLTSII--IIISILKRLVK---ARED---------RLLLGAICVIA 147 (420)
T ss_pred HHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHhc---cCCc---------cchHHhHHHHh
Confidence 999998877643 7889999999999999999999987 89999999885 4443 13334 7899
Q ss_pred hhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHhcC
Q 008538 273 SVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMG 352 (562)
Q Consensus 273 a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (562)
+|+||..||+|+|||.++.+. .+++|.|++....+++++++++.+.+.++.+|++.+.. . + ++ ++..
T Consensus 148 ANiGG~~TpIGdP~Ni~i~~~------~~i~f~~f~~~l~~p~li~l~v~~~il~~~~~~~~~~~-~-~----~~-~~~~ 214 (420)
T TIGR00775 148 VNAGGAWTPLGDVTTTMLWIN------GKIRFSGIIMPLFVPSLVCVVVAGFCGQLFLPKRKPNT-I-H----ED-VELK 214 (420)
T ss_pred cccccceeeCCCcchhHhHhc------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-c-c----cc-cccc
Confidence 999999999999999988752 35899988888889998887777777778787754211 1 0 11 1111
Q ss_pred CCChhHHHHHHH-HHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhc------------CCChHHHHhccCChhHHHHHHH
Q 008538 353 PMSTNEKIMAGT-LLLTVGLWVFGGRLNVDPVTAAILGLSILLVTG------------VVTWKECLAESVAWDTLTWFAA 419 (562)
Q Consensus 353 ~~~~~e~~~l~i-~~~~i~l~i~~~~~~i~~~~vali~~~ll~l~g------------~~~~~~~~~~~i~w~~ll~~~~ 419 (562)
+...++++.+.. +...+....+....++++.+++++++.++.+.+ ..+++|.+ +++||+++++++|
T Consensus 215 ~~~~~~~~~l~l~~~~~l~~f~~~~~~~l~~~~~al~~~~~lll~~~~l~~~~~~~~~~~~~~~~l-~~VDw~tLlfF~G 293 (420)
T TIGR00775 215 RALPKSRRIVLLGVGSLLMVPSWKAVLGFPPFMGALLGLGLVWLFSDWIHSPHGEKRLHLRVPHIL-TRIDISSLTFFIG 293 (420)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHhhccccccccccCHHHHH-HhCCccHHHHHHH
Confidence 221123333222 222233345556678999999999887776643 35677887 7899999999999
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHH
Q 008538 420 LIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAM 499 (562)
Q Consensus 420 ~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~ 499 (562)
.+.+.++++++|..+++++++.+..++. . . ..... ..+++.||.+.++.+.|+... -..++.+ .
T Consensus 294 lFilvg~l~~~G~l~~la~~l~~~~~~~----~-~---~~~s~--i~S~~IdNVP~va~~i~l~~~----~~~~~~w--~ 357 (420)
T TIGR00775 294 ILLAVNALSLLGYLEDVSNVMDTQFSRN----W-A---AVMVG--LLSSVLDNVPLVAATLGMYPL----PMSDGLW--K 357 (420)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcCcc----h-H---HHHHH--HHHHHhccHHHHHHHHHhccc----cCchHHH--H
Confidence 9999999999999999999988655432 1 1 11111 245799999999999998643 1123444 4
Q ss_pred HHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHH
Q 008538 500 VLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLG 550 (562)
Q Consensus 500 ~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~ 550 (562)
+++++++.+|+.|++|+.+|.+..+..+.++..+++..-+..++.......
T Consensus 358 aLalga~lGGn~tlIGS~Anvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (420)
T TIGR00775 358 LIAYTAGTGGSILIIGSAAGVALMGAEKVQFTWYFKHLSWIALASYFGGLV 408 (420)
T ss_pred HHHHHHCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788889999999999999888877766665554444455555544433
|
These proteins are members of the NhaD Na+:H+ Antiporter (NhaD) Family (TC 2.A.62). A single member of the NhaD family has been characterized. This protein is the NhaD protein of Vibrio parahaemolyticus which has 12 GES predicted transmembrane regions. It has been shown to catalyze Na+/H+ antiport, but Li+ can also be a substrate. |
| >KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-32 Score=271.85 Aligned_cols=410 Identities=19% Similarity=0.223 Sum_probs=305.2
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHH-----HHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 008538 128 AIFLATIVGIIAQPLPLGAVALLGLG-----ASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFV 202 (562)
Q Consensus 128 ~i~~~~i~lw~~~~i~~~~~all~~~-----~l~~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~ 202 (562)
.+++....+.++|.+|....++++.. +..+...-+++++.+.+++++..+++|++++...++++|++|+++....
T Consensus 183 ~il~gfyaLiVfe~v~rt~aa~~~s~ls~a~Lavi~~rptle~iv~wID~etL~LLfGmMilv~ilseTg~FdYlav~ay 262 (685)
T KOG2639|consen 183 VILAGFYALIVFEIVDRTFAAMLASTLSLAILAVIGDRPTLETIVSWIDFETLGLLFGMMILVAILSETGVFDYLAVLAY 262 (685)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 34555566668888887766655433 2334455789999999999999999999999999999999999999999
Q ss_pred HHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhccccc
Q 008538 203 KLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLT 282 (562)
Q Consensus 203 ~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~i 282 (562)
+..+++.+.++..+|++++++|++++|.+... .+.|+.+.+|+..+.||. ...++.+.-+|+||..||+
T Consensus 263 riSrG~~w~li~~Lclvtav~Sa~ldN~TtvL--Lltpv~IRLcevm~L~p~---------pvLi~~vi~aNIGga~TPI 331 (685)
T KOG2639|consen 263 RISRGHVWPLICLLCLVTAVLSAFLDNVTTVL--LLTPVVIRLCEVMNLDPH---------PVLIAVVIYANIGGAATPI 331 (685)
T ss_pred hHhcCCchHHHHHHHHHHHHHHHHhcCCeEEE--EecHHHHHHHHHhcCCCC---------ceEEEEEEecccccccCcC
Confidence 99988989999999999999999999999987 899999999999999987 4555677789999999999
Q ss_pred ccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCC----CCCCCCh---h--------------
Q 008538 283 AMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPT----VKSSPDA---P-------------- 341 (562)
Q Consensus 283 G~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~----~~~~~~~---~-------------- 341 (562)
|+|||.+++.- ++....+++|..|-..++|..+.+.+....+...+|..+ .++.++. +
T Consensus 332 GdPpNvIIatn-s~i~~~gv~f~~Ftahm~pgvlla~l~~~~~lrlly~~~~~l~~k~~~e~~el~~ei~v~r~~~~~~s 410 (685)
T KOG2639|consen 332 GDPPNVIIATN-SEIPKAGVDFAVFTAHMLPGVLLAMLQTFMYLRLLYWNIEELMVKEPDEEVELKHEIHVWRLAAAQVS 410 (685)
T ss_pred CCCCcEEEEec-ceecccCcchhhhhHHHHHHHHHHHHHHhhhHhhheechHHHhccCchHHHHHHHHHHHhhcCHhhcC
Confidence 99999988531 111124688999999999888877777766655555542 1111100 0
Q ss_pred ------HHHHH-----------HHHhcCCC--------------------C-hhH----HHHHHHHHHHHHHHHhcC---
Q 008538 342 ------KLAQE-----------KLEKMGPM--------------------S-TNE----KIMAGTLLLTVGLWVFGG--- 376 (562)
Q Consensus 342 ------~~~~~-----------~~~~~~~~--------------------~-~~e----~~~l~i~~~~i~l~i~~~--- 376 (562)
|..|. ++++..+. . .+. ++.+..+...+..+++.+
T Consensus 411 ~~sk~~envR~~~~~~i~~r~~~lr~r~~~~~~~~~a~~y~~tl~~l~~~~~irnk~ll~k~~~aL~fviv~F~l~svp~ 490 (685)
T KOG2639|consen 411 PASKEEENVRRTLSAKIRARARSLRERLPTSCNSNPAENYFNTLAELQAKNRIRNKTLLIKCLRALWFVIVCFFLQSVPS 490 (685)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhccccccCCccHHHHhhHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 10110 00100000 0 011 122333444444444443
Q ss_pred CC-CCchHHHHHHHHHHHHH-hcCCChHHHHhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHH
Q 008538 377 RL-NVDPVTAAILGLSILLV-TGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLS 454 (562)
Q Consensus 377 ~~-~i~~~~vali~~~ll~l-~g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~ 454 (562)
++ |.+.+|+++++++++.+ .+..|.+..+ ++++|++++|+++.|.+..++++.|+.+|+.+...+.....+.+....
T Consensus 491 ~~~gl~LgW~AIlgA~llLIl~d~~D~e~il-~rVews~LLFfaalFI~~e~v~~lGli~~l~dlte~vil~v~e~~~~~ 569 (685)
T KOG2639|consen 491 LHMGLSLGWTAILGAILLLILADIKDIEAIL-HRVEWSTLLFFAALFILMEAVDKLGLIEWLGDLTEPVILSVGESYRLM 569 (685)
T ss_pred HhcCCCccHHHHHHHHHHHHHhchhhHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhHHhhhcchhhhhH
Confidence 34 68899999998877665 5666766665 789999999999999999999999999999999998876665443333
Q ss_pred HHHHHHHH-HHHHHHhchhHHHHHHHHHHHHHHHH--HcCCChHHHHHHHHHHHhhhhcccccccccchheec----CCC
Q 008538 455 FGILILLY-FYSHYFFASGAAHIGAMFTAFLSVAS--ALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYG----ANY 527 (562)
Q Consensus 455 ~~il~~~~-~l~~~~~~sn~a~~~il~Pi~~~~a~--~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~----~g~ 527 (562)
..++.++. ....+.|.+|.+....++++..++.. +.|.+....+.+++++++.+|+.|-+|+.+|.++.+ .||
T Consensus 570 vAi~iilw~SAlasafidNipvt~~mVkl~~~lv~~~~~glpl~pliWaL~~ga~~gGNgTLiGasANvv~A~iAeqHGY 649 (685)
T KOG2639|consen 570 VAIVIILWVSALASAFIDNIPVTAIMVKLLTSLVANSAVGLPLQPLIWALALGACLGGNGTLIGASANVVAAGIAEQHGY 649 (685)
T ss_pred HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHhhccccCCCcchHHHHHHhhhhhcCCceeechhhHHHHHHHHHHcCc
Confidence 33322222 22345799999999999999988864 567776667777888888999999999999998765 354
Q ss_pred -cCHHHHHHHhHHHHHHHHHHHHH
Q 008538 528 -VPLAKWWGYGFIVSIVNIIIWLG 550 (562)
Q Consensus 528 -~~~~~~~k~g~~~~li~~vv~~~ 550 (562)
++|.+++|+|+|.++..+.+...
T Consensus 650 kltF~~fF~~GfPmml~si~i~t~ 673 (685)
T KOG2639|consen 650 KLTFTQFFKVGFPMMLGSITIGTV 673 (685)
T ss_pred eEEehhHHHhcccHHHHHHHHHHH
Confidence 89999999999999988877644
|
|
| >PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-30 Score=263.91 Aligned_cols=399 Identities=18% Similarity=0.198 Sum_probs=303.0
Q ss_pred HHHHHHHHHHHHhcc--CChhHHHHHHHHHHHhcCCCCHHHHHh--hcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 008538 127 LAIFLATIVGIIAQP--LPLGAVALLGLGASVLTKTLTFSAAFS--AFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFV 202 (562)
Q Consensus 127 l~i~~~~i~lw~~~~--i~~~~~all~~~~l~~~g~~~~~~v~~--~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~ 202 (562)
..+|+.++.+.+.++ +|.+..+..+..+.+.+|.++++|+.+ +..||..+++.+++.++..++++|++||++.++.
T Consensus 3 ~~if~~tl~~vi~rP~~l~~~~~A~~GA~l~l~~G~v~~~d~~~v~~~~~~~~l~~i~~~vis~~ld~~G~F~~~A~~~a 82 (423)
T PF02040_consen 3 IAIFLLTLLLVIWRPRGLPEAVWAVLGAALALALGVVPLSDALAVWGIVWDVTLFFIAMIVISELLDEAGFFDWLALHAA 82 (423)
T ss_pred HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHhCCcCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 456777777777754 899999999999999999999999875 5779999999999999999999999999999999
Q ss_pred HHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhccccc
Q 008538 203 KLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLT 282 (562)
Q Consensus 203 ~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~i 282 (562)
++.+++.+++...+.+++.+.+.|++|+++.. ++.|+++.++++.|.+|+++ ....+...+.+|.++...|+
T Consensus 83 ~~a~g~~~rLf~~v~ll~~~vTaflsND~tal--ilTPivla~~~~~~~~~~~~------lp~l~a~~~iAntASl~Lpv 154 (423)
T PF02040_consen 83 RWARGSGRRLFLLVYLLGAVVTAFLSNDATAL--ILTPIVLALARRLGLNPKPP------LPFLFACAFIANTASLLLPV 154 (423)
T ss_pred HhcCCCcchHHHHHHHHHHHHHHHHhccchhh--hhHHHHHHHHHHcCCCcccc------hHHHHHHHHHhhhhhccccc
Confidence 99888999999999999999999999999987 89999999999999987411 13455777889999999999
Q ss_pred ccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHhcCCCChhH---H
Q 008538 283 AMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNE---K 359 (562)
Q Consensus 283 G~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e---~ 359 (562)
+++.|++..++ .+++|.+|...+.+|.++.+.....+.|.+|||+..+..+.+ +.++..+..+++ +
T Consensus 155 SNltNLv~~~~------~~~~f~~y~~~m~~P~l~ai~~t~~vl~~~fr~~l~~~~~~~-----~~~~p~~~i~d~~~~~ 223 (423)
T PF02040_consen 155 SNLTNLVAADA------FGISFLEYAAVMALPSLAAIAVTYLVLWLYFRRDLPKRYDLS-----ELPPPKSAIKDPRLFR 223 (423)
T ss_pred cCcHHHHHHHc------cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchh-----cccCccccccchhHHH
Confidence 99999999864 578999999999999999999988888999988754322211 111111111122 3
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHh----cCCChHHHHhccCChhHHHHHHHHHHHHHHHHHhCHHHH
Q 008538 360 IMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVT----GVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITW 435 (562)
Q Consensus 360 ~~l~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~l~----g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~~~ 435 (562)
....+..+.+......+..|+|...++..++.++... +..+.++.. +++||+.+.|..|++.+..+++++|+.++
T Consensus 224 ~~~~vl~~ll~~~~~~~~~~ip~~~va~~~a~ill~~~~r~~~~~~~~~l-~~~pW~il~F~~gLfvvV~~L~~~Gl~~~ 302 (423)
T PF02040_consen 224 LSLVVLALLLAGFFVASFLGIPVSAVAGAGAVILLALARRSRKISPKRVL-REVPWSILPFVLGLFVVVEGLENTGLTEL 302 (423)
T ss_pred HHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHHHHHHHhcccccHHHHH-HhCCchHHHHHHHHHHHHHHHhhcCHHHH
Confidence 3344444455556667778899877777777666542 345566776 78999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccc
Q 008538 436 FSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYG 515 (562)
Q Consensus 436 la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~ 515 (562)
+++.+....++ +. ....+ .+..+.. ...++++|.+...+..+.+.+ ++..|........+..++++.|.++||.|
T Consensus 303 l~~~l~~~~~~-~~-~~a~~-~~g~~~A-~lsnl~NNLPa~Li~~~ai~~-~~~~~~~~~~~~~A~lIG~nlGp~lTp~G 377 (423)
T PF02040_consen 303 LARLLGTAASQ-GL-LAAIL-GMGFLSA-ILSNLMNNLPAVLIGALAIQA-AHAPGLVREALIYALLIGVNLGPNLTPIG 377 (423)
T ss_pred HHHHHHHHhcC-Ch-HHHHH-HHHHHHH-HHHHHHhhhHHHHHHHhhhhc-ccCCchhHHHHHHHHHHhcccCcccchHH
Confidence 99999876443 21 11222 2222222 234788999977655443321 22222223355677889999999999999
Q ss_pred cccchheec----CC-CcCHHHHHHHhHHHHHHHHHHHHH
Q 008538 516 IGSAPVFYG----AN-YVPLAKWWGYGFIVSIVNIIIWLG 550 (562)
Q Consensus 516 ~~~n~i~~~----~g-~~~~~~~~k~g~~~~li~~vv~~~ 550 (562)
|-.+.+-.+ .| +++++||+|.|++.+...+++...
T Consensus 378 SLATLLWl~~L~~~Gi~is~~~f~k~G~vlt~p~Ll~al~ 417 (423)
T PF02040_consen 378 SLATLLWLHILRRKGIKISWGEFLKLGLVLTPPVLLAALL 417 (423)
T ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHhHHHHHHHHHHHHH
Confidence 999987654 23 589999999999988877666543
|
Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane |
| >TIGR00784 citMHS citrate transporter, CitMHS family | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-27 Score=249.44 Aligned_cols=392 Identities=13% Similarity=0.067 Sum_probs=281.0
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhcCCCCHHHHH----hhcC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Q 008538 132 ATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAF----SAFG--DPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLF 205 (562)
Q Consensus 132 ~~i~lw~~~~i~~~~~all~~~~l~~~g~~~~~~v~----~~~~--~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~ 205 (562)
..+.+....++|+.+.-++......+....+ +|.. +++. .++..++..+.++++.++++|..|++++++.++.
T Consensus 12 ~~~~l~~~~k~~~~~al~~~~~~~~~~~g~~-~~~~~~i~~G~~~~~~~~~~i~~~~~l~~il~~sG~~~~i~~~iv~~~ 90 (431)
T TIGR00784 12 VFMILIMTKRLSPLVALTITPIVFALIGGFG-KGIGDMMIEGIQTVAPTAAMLLFAILYFGIMIDAGLFDPLIEKILSIV 90 (431)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3344445566776655444444443333355 5643 3333 4678888888889999999999999999999999
Q ss_pred CCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccc
Q 008538 206 GSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMA 285 (562)
Q Consensus 206 g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~ 285 (562)
|+++..+.+.....+..++.+.+|.++.. ++.|+..+++++.|.||. .+......+++.++ .+|.|++
T Consensus 91 ~~~~~~l~~~~~~~~~~i~~~~~~~~~~l--i~~p~~~~l~~~lgi~~~---------~l~~~i~~~~~~~~-~~P~g~p 158 (431)
T TIGR00784 91 KGDPLKIAVGTAVLTMLIALDGDGTTTYM--ITVSAMLPLYKRLGMNPM---------VLAGIAMLGLGIMN-MIPWGGP 158 (431)
T ss_pred CCCCceeHHHHHHHHHHHHHHhccchhhh--hHHHHHHHHHHHcCCCHH---------HHHHHHHHHhhhhc-ceeCCch
Confidence 98888888899999999999999888875 789999999999999985 45555666677777 8899999
Q ss_pred hhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCC----ChhHHHHH-HHHhcCCCC--hhH
Q 008538 286 ANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSP----DAPKLAQE-KLEKMGPMS--TNE 358 (562)
Q Consensus 286 ~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~--~~e 358 (562)
.|..+.. .++++.||+++..|..+..+++...+.++++|++.++.. +.++..++ +.++..+.+ +.+
T Consensus 159 ~~~~a~~-------lg~~~~~~~~~~~p~~i~~li~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (431)
T TIGR00784 159 TTRAISV-------LGLDPSEFFVPLIPTMLGGILCVIAVAYLLGKKERKRLGVIQLEPRASQSYPAAALESELKRPRLI 231 (431)
T ss_pred HHHHHHH-------cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHhcccccchhhhhhhhccchhhhhcCchHH
Confidence 8866543 357899999999999998887777777776665443210 00000000 100111111 233
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhcCCCh---HHHHh----ccCChhHHHHHHHHHHHHHHHHHhC
Q 008538 359 KIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTW---KECLA----ESVAWDTLTWFAALIAMAGYLNKYG 431 (562)
Q Consensus 359 ~~~l~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~l~g~~~~---~~~~~----~~i~w~~ll~~~~~~~l~~~l~~tG 431 (562)
+..+..++..+++.+.+. .+...+++++..+..+.+..+. +|..+ +.++|.++++.++.+ +++++++|
T Consensus 232 ~~~Ll~~l~viv~~~~~~---~~~~~~~li~~~iall~~~~~~~~~~~~i~~~~~~~v~~~~Li~~aglf--~~~l~~~G 306 (431)
T TIGR00784 232 WFNLLLTISLMVFLVLGT---KHLSVLFLIAFVLALTVNYPNVKMQKERIAAHSGNALTVVSMVFAAGVF--TGILSGTK 306 (431)
T ss_pred HHHHHHHHHHHHHHHhcc---cCHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccccHhHHHHHHHHHHHH--HHHHhhcC
Confidence 556665555555444432 4566777888777776664333 33344 456677777777777 89999999
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcc
Q 008538 432 LITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGL 511 (562)
Q Consensus 432 ~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~ 511 (562)
..|++++.+.+..++... .....++.. .....++++||++....+.|++.+++++.|++|.....+..++.++ .++
T Consensus 307 ~i~~la~~l~~~~~~~~~--~~~~~i~~~-~s~~~s~~~sn~a~~~~l~Piv~~ia~~~G~~~~~l~~a~~i~~~~-~~~ 382 (431)
T TIGR00784 307 MVDAMAGSLVSIIPSSMG--GFFPVIVAL-TSIPFTFVMSNDAYYFGVLPIFAEAASAYGIDPVEIARASIMGQPV-HLL 382 (431)
T ss_pred HHHHHHHHHHHHcCcchH--HHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccc-hhc
Confidence 999999999998765321 122222222 2233467889999999999999999999999999888888888776 788
Q ss_pred cccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHH
Q 008538 512 THYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGG 553 (562)
Q Consensus 512 tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~ 553 (562)
+|+ +|+|.+++|.++++.+|+.|.+++..++..++...+++
T Consensus 383 SPv-s~~~~l~~~~~~~~~~d~~k~~~~~~~~~~~v~~~~~~ 423 (431)
T TIGR00784 383 SPL-VPSTVLLVGMLGVSLGDHQKFAVKWAVITSIVMTLLAL 423 (431)
T ss_pred CCc-hHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 89999999999999999999999999988877665543
|
This family includes two characterized citrate/proton symporters from Bacillus subtilis. CitM transports citrate complexed to Mg2+, while the CitH apparently transports citrate without Mg2+. The family also includes uncharacterized transporters, including a third paralog in Bacillus subtilis. |
| >PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-27 Score=248.03 Aligned_cols=322 Identities=23% Similarity=0.268 Sum_probs=244.3
Q ss_pred HHHhccCChhHHHHHHHHHHHhc-----CCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCch
Q 008538 136 GIIAQPLPLGAVALLGLGASVLT-----KTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSL 210 (562)
Q Consensus 136 lw~~~~i~~~~~all~~~~l~~~-----g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~ 210 (562)
.+..++.|....+.+...++.++ +..+++|.++.++|+++.++.|++. ++.+++||+.|++++++.++.|++++
T Consensus 12 ~~~~~~~~~~~~~~~~a~~~~l~g~~~~~~~~~~~~~~~~~~~~l~ll~g~~~-~~~l~~tG~~~~ia~~i~~~~~~~~~ 90 (351)
T PF03600_consen 12 VLIRKKIPVVAAALLGALLVALFGFPGFGVISPEEAFSFIDWNTLILLFGMMI-GAALEETGVFDWIARKIVRKSGGKPW 90 (351)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhccccccCHHHHHHHcchhHHHHHHHHHH-HHHHHHcCChHHHHHHHHhccCCCHH
Confidence 44566777777777777777777 7889999999999999999999999 99999999999999999999988888
Q ss_pred hHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHH
Q 008538 211 GLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLS 290 (562)
Q Consensus 211 ~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~ 290 (562)
++.+.++.+++++|++.+|+++.+ ++.|+..+++++.|.+|. .+.+.+.++++.||..||+|+|+|.++
T Consensus 91 ~l~~~~~~~~~~lS~~~~N~~~v~--~~~Pi~~~~~~~~~i~~~---------~~l~~l~~~a~~gg~~t~iG~p~nl~i 159 (351)
T PF03600_consen 91 RLLLLLMLVTALLSAFLDNTTVVL--IMIPIVLSLARKLGIPPS---------PLLMPLAFAANIGGMLTPIGNPTNLII 159 (351)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHH--hhHHHHHHHHHHcCCChH---------HHHHHHHHHhccccccCcCCCcchhhh
Confidence 899999999999999999999987 788999999999999875 466688899999999999999999888
Q ss_pred HHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 008538 291 ATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVG 370 (562)
Q Consensus 291 ~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~i~~~~i~ 370 (562)
.+. .+.++...|++....|..++++++.....++..|++ +++......++...+.
T Consensus 160 ~~~----~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~ 214 (351)
T PF03600_consen 160 ANA----SGLPFFGFDFFALGLPAVIVGLLVLIFILYFLFRKR---------------------KPKLFASPFILVLVVI 214 (351)
T ss_pred hhh----cccccchhhhHhhhHHHHHHHHHHHHHHHHHHcccc---------------------CcchhHHHHHHHHHHH
Confidence 431 133333399999999988887777766555554440 0111112222222222
Q ss_pred HHHhcCCCCCchHHHH-HHHHHHHHHhcCCChHHHHhc------cCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 008538 371 LWVFGGRLNVDPVTAA-ILGLSILLVTGVVTWKECLAE------SVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKF 443 (562)
Q Consensus 371 l~i~~~~~~i~~~~va-li~~~ll~l~g~~~~~~~~~~------~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~ 443 (562)
.... ..+..+.+.+ +.++.++.+.+..+.||.. + ++||++++++++.+.++++++++|..|.+++.+.+.
T Consensus 215 ~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~l~~tG~~~~la~~l~~~ 291 (351)
T PF03600_consen 215 LVLL--VSGLVPIWIALLIGALLALLTNCKDLKEAY-RVLNSGASIDWNTLLFFAGLFIFVGALSNTGAFEALADWLLSI 291 (351)
T ss_pred HHHH--HhccCcHHHHHHHHHHHHHHHhcccchhhh-HHHHhhccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2211 2334444444 4456666666777777765 5 899999999999999999999999999999999987
Q ss_pred hcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHH-----HHHHHHHHHHcCCChHHHHHHHHHH
Q 008538 444 VGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAM-----FTAFLSVASALGCPPYFVAMVLAFF 504 (562)
Q Consensus 444 ~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il-----~Pi~~~~a~~~Gv~p~~~~~~~~~~ 504 (562)
.+.. ....+..... ..+.+.||.+....+ .|+....+++.|++|..+.++.+++
T Consensus 292 ~~~~-----~~~~i~~~~~--~ls~~~~n~p~~~~~~~~~~~pi~~~~~~~~Gv~~~~l~~~~~ia 350 (351)
T PF03600_consen 292 SGPL-----GPLAILWVSA--LLSAVISNVPATLLMSNDAMLPIAISMAQQFGVSPLPLAWALAIA 350 (351)
T ss_pred Hhhh-----HHHHHHHHHH--HHHHHHHhhhHHHHHhhhHHHHHHHHHHHHCCCCHHHHHHHHHhc
Confidence 6521 1122222222 234577888877766 8999999999999999888776654
|
Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=233.34 Aligned_cols=450 Identities=14% Similarity=0.134 Sum_probs=318.0
Q ss_pred hhhhccccccccccccCCCccccceeeeecccccccCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHhccCCCCCCHHH
Q 008538 44 LTQTNNLTFRNQYFLTNPSLKFKRLTVQASASAGAAVAPAPEQKPQQPWQGAALKPLIASIATGLILWFVPVPSGVSKNA 123 (562)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lt~~~ 123 (562)
|+++..++|.+||+..+|+|+|..+... +++++++. ...-|. ..+
T Consensus 1 M~~s~~~Af~~NFLG~sP~WYK~~Ii~F----------------------------LiiNPi~~--~~~~Pf-----vaG 45 (515)
T PF06450_consen 1 MPMSLGQAFFKNFLGNSPDWYKLTIIAF----------------------------LIINPILF--FFVGPF-----VAG 45 (515)
T ss_pred CCccHHHHHHHhcCCCCchHHHHHHHHH----------------------------HHHhHHHH--HhcChH-----HHH
Confidence 5788999999999999999999966554 66777664 334554 789
Q ss_pred HHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 008538 124 WQLLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVK 203 (562)
Q Consensus 124 ~~~l~i~~~~i~lw~~~~i~~~~~all~~~~l~~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~ 203 (562)
|...+.|++++.+ ..+++|....+++++.+ +..|..+++++.++...|.-++++-+||.++......++-.+..+++-
T Consensus 46 WlLv~EFIFTLAM-ALKCYPLqpGGLLAiEA-v~iGmTsp~~v~hEi~~N~eViLLL~FMVAGIYFMK~lLlf~FTklLl 123 (515)
T PF06450_consen 46 WLLVAEFIFTLAM-ALKCYPLQPGGLLAIEA-VAIGMTSPEQVYHEIAANFEVILLLMFMVAGIYFMKQLLLFVFTKLLL 123 (515)
T ss_pred HHHHHHHHHHHHH-HHhcCCCCCCcHHHHHH-HHHcCCCHHHHHHHHHhChHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 88999999889888887 677999999999999999999999999999999999999999999988
Q ss_pred HhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHH---HHHHcCCCCC---------C-----------Ccchh
Q 008538 204 LFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKS---LCLACGSNTG---------D-----------GTEHK 260 (562)
Q Consensus 204 ~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~---i~~~~g~~~~---------~-----------~~~~~ 260 (562)
+. +++..+.+.+++.++++|+|.|..++++ +++.+..+ ++++.....+ | +++|.
T Consensus 124 ~i-rSK~~LSL~Fc~~aAfLSAFLDALTV~A--ViIsVa~GFY~iYHkvaSg~~~~~~~d~~~D~~v~~~~r~~Le~FRa 200 (515)
T PF06450_consen 124 KI-RSKIVLSLAFCFAAAFLSAFLDALTVTA--VIISVAVGFYSIYHKVASGKDFHDDHDHTDDSKVDELNREDLEQFRA 200 (515)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHhhhhhhe--eeeEeeehhhhhhhhhhcCCCCCCccCCccchhhhhhhHHHHHHHHH
Confidence 77 6778889999999999999999999886 55555443 4443321110 0 55667
Q ss_pred hhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCC-CC
Q 008538 261 LGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSS-PD 339 (562)
Q Consensus 261 ~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~-~~ 339 (562)
|.|.+++..+.++.+||.+|++|.|+|++++. ..+++|.||+.++.|+++..++++.+.|+.+.|.+.... .+
T Consensus 201 FLRsLmMH~~VGTALGGV~TmVGEPQNLiIa~------~agW~F~eFflrmaPVt~PVl~~Gl~tc~l~Ek~~~fGYG~~ 274 (515)
T PF06450_consen 201 FLRSLMMHAAVGTALGGVMTMVGEPQNLIIAK------QAGWDFGEFFLRMAPVTLPVLICGLLTCVLVEKFKWFGYGAK 274 (515)
T ss_pred HHHHHHHhcccchhhcceeeecCCchhhhhhh------hcCCCHHHHHHhhccchHHHHHHHHHHHHHHHHhhhcCCccc
Confidence 88999999999999999999999999999874 246999999999999999999999999998888766543 22
Q ss_pred hhHHHHHHH-----HhcCCCChhHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH----hcCCChH---HHHhc
Q 008538 340 APKLAQEKL-----EKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLV----TGVVTWK---ECLAE 407 (562)
Q Consensus 340 ~~~~~~~~~-----~~~~~~~~~e~~~l~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~l----~g~~~~~---~~~~~ 407 (562)
.+|.+++.+ ++..++++++|..+++..+.-++.+.+-..|+. -++++|..++.+ .|+.+++ +++++
T Consensus 275 lP~~Vr~iL~~~~~~~~~~rt~~~~~~L~vQa~~~vwLi~~LA~HlA--~VGlIGLsVIil~Taf~Git~EH~iGkAFeE 352 (515)
T PF06450_consen 275 LPENVRQILEEFDKEEDAKRTKQDKAKLIVQALIGVWLIVALAFHLA--EVGLIGLSVIILATAFCGITDEHAIGKAFEE 352 (515)
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHhcCCcchhhhhHhHhh
Confidence 333333322 233467889999999998888777776544443 366777655543 5777765 56667
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Q 008538 408 SVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVA 487 (562)
Q Consensus 408 ~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a 487 (562)
..|+..++- -.|++.+++-+-.+.+-+-++....-++... . +..+.-. ..+.+.+|.-+..+-+-=+-...
T Consensus 353 aLPFTALL~--VFF~vVaVI~dQ~LF~PiI~~VL~~~~~~Ql--~----~fy~aNG-lLS~iSDNVFV~TVYI~E~k~A~ 423 (515)
T PF06450_consen 353 ALPFTALLV--VFFAVVAVIIDQHLFTPIIQFVLSAEGSSQL--A----MFYIANG-LLSMISDNVFVATVYINEVKAAL 423 (515)
T ss_pred ccchHHHHH--HHHHHHHHHhhhhhhHHHHHHHHcCCCccch--h----HHHHhhh-hHHhhccceeEEEEeHhhHHHHH
Confidence 788777654 3567778888888888888877765443211 1 1111111 12345666533322222222111
Q ss_pred HHcCCChHHHHHHHHHHHhhhhcc----cccccccchheecC-----CCcCHHHHHHHhHHHHHHHHHHHHHH
Q 008538 488 SALGCPPYFVAMVLAFFSNLMGGL----THYGIGSAPVFYGA-----NYVPLAKWWGYGFIVSIVNIIIWLGV 551 (562)
Q Consensus 488 ~~~Gv~p~~~~~~~~~~~~~~~~~----tp~~~~~n~i~~~~-----g~~~~~~~~k~g~~~~li~~vv~~~~ 551 (562)
+.-.+++..+= .++.+.|.|.++ ||-|........-. =+.|++++.+...|.+++.-++....
T Consensus 424 ~~G~Is~~qf~-~LAVAINTGTNlPSVATPNGQAAFLFLLTSalAPLirLSYgrMV~MAlPYTiVl~~vGl~~ 495 (515)
T PF06450_consen 424 DAGVISREQFD-LLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGRMVWMALPYTIVLTLVGLLA 495 (515)
T ss_pred HcCCcCHHHHh-hHHhhhhcCCCCCcCcCCCchhHHHHHHHHhhHHHHHHhHhhHHhHhccHHHHHHHHHHHH
Confidence 22224433221 122333444444 33332222221111 25799999999999999877776554
|
Unlike NhaA, IPR004670 from INTERPRO, this activity is not pH dependent.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0016021 integral to membrane |
| >TIGR00786 dctM TRAP transporter, DctM subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-23 Score=220.57 Aligned_cols=362 Identities=15% Similarity=0.096 Sum_probs=247.0
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHH
Q 008538 166 AFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSL 245 (562)
Q Consensus 166 v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i 245 (562)
.++..++..+.-+.-...++..++|+|..|++.+.+.+.+|+.+.+.....++.+.+++.+.++..+.+ +.+.|+.+++
T Consensus 31 ~~~~~~~~~l~ai~~Fi~~g~~l~~~G~~~~l~~~~~~~~g~~~~~~~~~~~~~~~l~g~l~Gs~~ata-a~~~~~~iP~ 109 (405)
T TIGR00786 31 LFGGTDSFTLLAIPFFILAGNLMNRGGLARRLLNFAKALVGHLRGGLGHVNVLACALFAAVSGSSVATA-AALGSLLIPA 109 (405)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHhccchHHHHH-HHHHHHHHHH
Confidence 345555555544444446799999999999999999999999999999999999999999987777776 4799999999
Q ss_pred HHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhH--HHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHH
Q 008538 246 CLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANP--LSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVP 323 (562)
Q Consensus 246 ~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~--i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~ 323 (562)
.++.|+||+ . ..+..+..++....+ |+|. +.++.. .++++.||+..+..++++..+...
T Consensus 110 m~~~g~~~~----------~--a~av~a~~~~~g~l~--Pp~~~~i~~a~~-----~~i~~~~~~~a~~~p~~l~~~~~~ 170 (405)
T TIGR00786 110 MTKAGYPKA----------F--AAGVIAASGIIGPLI--PPSIVMIIYGVA-----AGVSIAKLFIAGILPGLLLALSLM 170 (405)
T ss_pred HHHcCCCHH----------H--HHHHHHHHhcccccc--CchHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999986 1 222223333333333 4443 444332 248999999988888777666555
Q ss_pred HHHHHHcCCCCCCCCChhHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH--HhcCCCh
Q 008538 324 LLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILL--VTGVVTW 401 (562)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~--l~g~~~~ 401 (562)
.+.+.+.||+.++.++ +++.+++.+ ..++++..+.+.++.+..+..+.+...+....+...+++.. ..+..++
T Consensus 171 ~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~l~l~~~vi~~~~~g~~~~~~a~~~~~~~alli~~~~~~~~~~ 245 (405)
T TIGR00786 171 LTIWWVARRLGYPRPP-KASLRQRLR----AFRKSIWALLLPVLIIGGIFSGIFTPTEAAAVAAVYALALSTFVYRELTL 245 (405)
T ss_pred HHHHHHHhcCCCCCCC-ccCHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 5555555543222111 111111111 11334455555555555555554433343434444444432 3356788
Q ss_pred HHHHhccCC------hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHH
Q 008538 402 KECLAESVA------WDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAH 475 (562)
Q Consensus 402 ~~~~~~~i~------w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~ 475 (562)
||.. +.++ +.++++++++..++..++++|+.|.+++.+.+.. . + +. ....+..+.....+++++|++.
T Consensus 246 ~~~~-~~l~~~~~~~~~i~lii~aa~~~~~vL~~tG~~~~ia~~l~~~~-~-~--~~-~~~~li~~~~~ilg~~~~~~a~ 319 (405)
T TIGR00786 246 KSLC-DVLLESLRTTSMVMLIIAGATVFSWLLTHAQIPQRLADLLANAI-S-S--PI-VFLIMINILLLIVGMFMDLTPA 319 (405)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHhCC-c-c--HH-HHHHHHHHHHHHHHhcccHHHH
Confidence 8764 5555 6788888999999999999999999999998752 2 1 12 2222233334445679999999
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008538 476 IGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVW 555 (562)
Q Consensus 476 ~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~~~ 555 (562)
..++.|++.|++++.|+||.++.+.+.+++++ +++||.-+.+..+..+.++++++|++|.++|+.++..++..++ .+
T Consensus 320 ~~i~~PI~~p~a~~~Gv~p~~~~~~~~~~~~~-g~ltPPvg~~~~~~~~~~~~~~~~~~k~~~p~~~~~~~~~~~~--~~ 396 (405)
T TIGR00786 320 ILILTPILLPVAVHLGIDPVHFGVMFVLNLEI-GLLTPPVGTNLFVASGVAKMSITEVTRALWPFLLAQFLVLLLV--TY 396 (405)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-hcCCCCchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 99999999999999999999998888888887 7888743333335578889999999999999998888776554 55
Q ss_pred HHHhhc
Q 008538 556 WKFIGL 561 (562)
Q Consensus 556 w~~~Gl 561 (562)
|+.+-+
T Consensus 397 ~p~~~~ 402 (405)
T TIGR00786 397 FPALSL 402 (405)
T ss_pred HHHHHh
Confidence 555443
|
force-dependent uptake of dicarboxylates into R. capsulatus. |
| >PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-23 Score=216.01 Aligned_cols=380 Identities=13% Similarity=0.059 Sum_probs=252.1
Q ss_pred ccCChhHHHHHHHHHHHh-cCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHH
Q 008538 140 QPLPLGAVALLGLGASVL-TKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVF 218 (562)
Q Consensus 140 ~~i~~~~~all~~~~l~~-~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~ 218 (562)
+.+..+..+.++...+.+ +| .+++| +++++++++++...+.+.++|||..|+++++..+..++++++..+.+.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~vi~~Il~vg~~~~vl~~TGaid~~~~~~~k~~~~~~~~~~lli~i 94 (433)
T PRK09412 20 GGIGIGFAGGLGVLILTFIFG-LKPGS----IPIDVILIIMAVIAAIAAMQAAGGLDYLVKLAEKILRKNPKYITFLAPI 94 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhcC-CCCCC----CCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHhHHHH
Confidence 445566666666665544 45 45555 8999999999999999999999999999998888888888877777888
Q ss_pred HhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhc
Q 008538 219 SEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTI 298 (562)
Q Consensus 219 ~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~ 298 (562)
+..++|.+.++.++.. .+.|+..+++++.|+||. ..+.....++++|+..+|++.+++.++ +.++
T Consensus 95 ~~~lfs~~~~~~~~~i--~~~PI~i~ia~~lG~d~~---------~~l~~~~~~a~iG~~aspin~~tv~ia-~~ia--- 159 (433)
T PRK09412 95 VTYLFTFLAGTGHIAF--STLPVIAEVAKEQGIRPS---------RPLSIAVVASQIAITASPISAAVVAMS-SVLE--- 159 (433)
T ss_pred HHHHHHHHhcHHHHHH--HHHHHHHHHHHHcCCCCc---------chHHHHHHHHHHhcccCCccHHHHHHH-HHHh---
Confidence 8888887776655544 699999999999999986 123356678899999999987654444 3333
Q ss_pred CCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHH--HHH--H-HhcCCCChhHHHHHHHHHHHH-HHH
Q 008538 299 NQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLA--QEK--L-EKMGPMSTNEKIMAGTLLLTV-GLW 372 (562)
Q Consensus 299 g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~-~~~~~~~~~e~~~l~i~~~~i-~l~ 372 (562)
+.++++.||++.+.|..++..++...+.+++.||.+++ |+.+++. +++ . ++..+.++|||..+.+|++.+ ...
T Consensus 160 ~~gi~f~~~~~~~lp~~iv~~~~~~~~~~~ya~kv~~~-P~~~~~~~~~~~~~~~~~~~~~t~r~kl~l~if~~~i~~~~ 238 (433)
T PRK09412 160 PLGVSYLTLLMVVIPSTLLAVMVAAFVTNKMGKELKDD-PEYQKRLAEGLVKLRGEKEIEIKPGAKLSVILFLLGVVAVV 238 (433)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hhHHHHhhchhhccccccccccCHhHHHHHHHHHHHHHHhe
Confidence 34699999999999999998888777766665543322 2211110 111 1 122367889999999999887 444
Q ss_pred HhcCCC----CC------chH--H--HHHHHHHHHHHhcCCChHHHHhccCCh---hHHHHHHHHHHHHHHHHHhCHHHH
Q 008538 373 VFGGRL----NV------DPV--T--AAILGLSILLVTGVVTWKECLAESVAW---DTLTWFAALIAMAGYLNKYGLITW 435 (562)
Q Consensus 373 i~~~~~----~i------~~~--~--vali~~~ll~l~g~~~~~~~~~~~i~w---~~ll~~~~~~~l~~~l~~tG~~~~ 435 (562)
+.+... +. ... . ..+..+++..+.+.++.+|..+++..+ +.++.+.|..-....+.+.+ .|.
T Consensus 239 i~G~~~~~~~~w~~~~~~~~~e~~~~~fl~~gii~glv~gl~~~~ia~~~~F~~G~~~~v~iiGlA~~i~vi~~~~-~dt 317 (433)
T PRK09412 239 LYAIFPSLRPGFIEGPPLGMTEAIQIFMLSAAALIVLLCKIDTDEILSSSVFKSGMSACICILGVAWLGDTFVNAH-IDE 317 (433)
T ss_pred eeeeccccccccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHH
Confidence 444322 12 111 1 134444455556667777754322333 44455666555555555565 699
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccc
Q 008538 436 FSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYG 515 (562)
Q Consensus 436 la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~ 515 (562)
+.+.+.+.+++.+ ......+.++..+ +.| .+++. |++.|+++..|++|+..+.+.+++.+ ++++|.+
T Consensus 318 I~~~l~~~l~~~p---~~~a~~mfiv~~~----i~g---qAa~~-pIm~PLad~lGi~rq~~Vla~q~g~g--n~i~Pts 384 (433)
T PRK09412 318 IKETAGSLIQSYP---WLLAVALFFASAL----LYS---QAATA-KALMPLALALGVPPLTAIASFAAVSG--LFVLPTY 384 (433)
T ss_pred HHHHHHHHHhhCC---HHHHHHHHHHHHH----Hhh---HHHHH-HHHHHHHHHcCCCHHHHHHHHHHhcc--CEECCCc
Confidence 9999999987542 2222233333322 223 33444 99999999999999999888888775 6777753
Q ss_pred cccchheecCCCcCHHHHHHHhHH-----HHHHHHHHHHHHHHHH
Q 008538 516 IGSAPVFYGANYVPLAKWWGYGFI-----VSIVNIIIWLGVGGVW 555 (562)
Q Consensus 516 ~~~n~i~~~~g~~~~~~~~k~g~~-----~~li~~vv~~~~~~~~ 555 (562)
+.-.-..+..++++.+|.|+.+- ..++.......+++.+
T Consensus 385 -~~~ma~l~~~~i~~~~w~k~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (433)
T PRK09412 385 -PTLLAAVEMDDTGTTRIGKYVFNHSFMIPGLLGIAVSVAFGFLL 428 (433)
T ss_pred -HHHHHHHhccCCCcchhhhhhcCCccccccHHHHHHHHHHHHHH
Confidence 22232346678999999987643 2234444444444433
|
|
| >COG1288 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=207.98 Aligned_cols=441 Identities=14% Similarity=0.112 Sum_probs=279.8
Q ss_pred CCCCCCcchhhhhHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH--HHHHHHHHHhcc---------CChhHHHHHHHH
Q 008538 85 EQKPQQPWQGAALKPLIASIATGLILWFVPVPSGVSKNAWQLLAI--FLATIVGIIAQP---------LPLGAVALLGLG 153 (562)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~lt~~~~~~l~i--~~~~i~lw~~~~---------i~~~~~all~~~ 153 (562)
+..+..+.++.+.+.+++.++..++.|++|+ ..+++.....-.+ ..+-+..-+-++ ++....++....
T Consensus 5 ~~~kk~k~P~~ftILf~ii~~~ailTwviPa-G~y~~v~~~~g~~d~~~~~~~g~~~k~~~i~~ty~~~~~~~~G~~~~~ 83 (481)
T COG1288 5 KKKKKFKMPSAFTILFIIIILAAILTWVIPA-GKYDRVQYQMGVLDPLSFKILGEIGKPIAIPGTYFTVGDEPQGFMNIL 83 (481)
T ss_pred ccccccCCCcHHHHHHHHHHHHHHHheeecC-ccchhhhhccCCCCccceeeccccCcccccCcceeccCCCCcchhhhh
Confidence 3334456667788888888888888899997 4444311110000 000000000000 011111222222
Q ss_pred HHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhh
Q 008538 154 ASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSAR 233 (562)
Q Consensus 154 ~l~~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~ 233 (562)
...+.|....+ ...+--.++++.|++. +.++|||.+|.-...+.++.+++...+...++.+..+...+......+
T Consensus 84 ~a~~~~~~~~~---~Av~Ii~FiLviGG~~--GIvnkTGaid~Gi~ali~k~kG~e~llI~~l~ilFslgGt~~Gm~EEa 158 (481)
T COG1288 84 FAPLTGGSKVG---TAVDIIFFILVIGGAF--GIVNKTGAIDAGIAALIRKTKGKEFLLIPVLFILFSLGGTVFGMGEEA 158 (481)
T ss_pred hhhcccccccC---Cccceeeehhhhccee--eeeeccchHHHHHHHHhhhcCCCeEEEeeHHHHHHHhccccccchHHH
Confidence 22222221111 1122223444555544 789999999999999999998888888889999999999999888888
Q ss_pred hhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHH-HHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHh
Q 008538 234 AGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTC-FQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAI 312 (562)
Q Consensus 234 ~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~-~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~ 312 (562)
. .++|+..+++.+.|+|+. ...+. ..++.+|. ..+..|+...+..++.+|.++.-+-.+|...
T Consensus 159 i--aFypIliPv~ialGyDsi----------~~va~i~lgt~iG~----~~St~NPF~~~IAq~iAGip~~sG~~~Riv~ 222 (481)
T COG1288 159 I--AFYPILIPLMVALGYDSI----------TGVAIIYIGTQIGF----AASTMNPFATVIAQNIAGIPFLSGMGLRIVV 222 (481)
T ss_pred H--HHHHHHHHHHHHhCCchH----------HHHHHHHHHhccch----hhhhcCchHHHHHhhhcCCcccccchHHHHH
Confidence 6 699999999999999964 22233 33444333 3456688887777777675555454555443
Q ss_pred HHHH--HHHHHHHHHHHHHcCCCCCCC-CChhHHHHHH----HHhcCCCChhHHHHHHHHHHHHHHHHhcC----CCCCc
Q 008538 313 VPGL--VSLIVVPLLLYIIYPPTVKSS-PDAPKLAQEK----LEKMGPMSTNEKIMAGTLLLTVGLWVFGG----RLNVD 381 (562)
Q Consensus 313 ~~~l--i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~e~~~l~i~~~~i~l~i~~~----~~~i~ 381 (562)
.... .++.+.+.++.++.|++.+.. .+++|+.++. .++..+.+.++|..+.+|.+++..++.+- |.-.+
T Consensus 223 ~v~~~~~~i~y~~~Ya~KvkkdP~~S~v~~~~~e~r~~f~~~~~~~~~Ft~~~klvL~lf~l~f~~mI~GV~~~GW~f~e 302 (481)
T COG1288 223 WVVFTLISIIYVYWYASKVKKDPTLSLVYEDDEEFRETFKVEDSGERPFTFRDKLVLLLFTLTFVIMIWGVIVLGWWFPE 302 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccchHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHHhhhhceehHH
Confidence 3322 223333333333333332221 2223333331 12233688899999999999988887763 22223
Q ss_pred hHHHHHHHHHHHHHhcCCChHHHHhccCChhHHHHHHHHHHHHHH------HHHhCHHHHHHHHHHHHhcCCCchhHHHH
Q 008538 382 PVTAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGY------LNKYGLITWFSQTVVKFVGGLGLSWQLSF 455 (562)
Q Consensus 382 ~~~vali~~~ll~l~g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~------l~~tG~~~~la~~l~~~~~~~~~~~~~~~ 455 (562)
.+...+...++..+++.+++||.. +...-+.--++++++.++-+ +++.-+.|.+-+...+.+.+.+. ....
T Consensus 303 iA~~Fl~mgIiig~I~glse~~~~-~sF~~Ga~~lv~~aLiiGiARgI~lim~~g~i~dTiL~~~~~~lsgls~--~~f~ 379 (481)
T COG1288 303 IAAQFLAMGIIIGLIGGLSENDIA-SSFIEGASDLLGVALIIGLARGINLIMDDGMILDTILNYLASLLSGLSS--AVFA 379 (481)
T ss_pred HHHHHHHHHHHHHHHhccchhHHH-HHHHHhHHHHHHHHHHHHhhhceEEEecCcchHHHHHHHHHHHHhcCCH--HHHH
Confidence 333444445555567788889876 44444555666666666555 67788999999999999988764 3334
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHH
Q 008538 456 GILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWG 535 (562)
Q Consensus 456 ~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k 535 (562)
+.+.++....++.++|.++.+.+.+|+++|+++..|++++..+.+.+.+.+...+++|.+ ..-....+.+++++++|+|
T Consensus 380 i~mli~~~~l~f~VpS~SG~A~ltMPImAPLaD~vgv~RqvvV~Afq~g~G~~n~I~PTS-g~~ma~La~~~i~y~~W~K 458 (481)
T COG1288 380 IGMLIFQALLNFFVPSGSGLAVLTMPIMAPLADLVGVPRQVVVLAFQLGDGFSNIIAPTS-GLLMATLAMARVPYGTWLK 458 (481)
T ss_pred HHHHHHHHHheEEEeCCCchhHhhchhhhhhHHhcCCCHHHhhhhhhhcchhhheecCch-HHHHHHHHHccCChhHHHH
Confidence 455666666777899999999999999999999999999999999999988755555532 1112223468999999999
Q ss_pred HhHHHHHHHHHHHHHH
Q 008538 536 YGFIVSIVNIIIWLGV 551 (562)
Q Consensus 536 ~g~~~~li~~vv~~~~ 551 (562)
+..|+..+..++..++
T Consensus 459 fv~pl~~i~~li~~~~ 474 (481)
T COG1288 459 FVAPLLGILFLISSVV 474 (481)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998877776543
|
|
| >COG3067 NhaB Na+/H+ antiporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.7e-24 Score=202.94 Aligned_cols=447 Identities=15% Similarity=0.129 Sum_probs=300.2
Q ss_pred hhhhccccccccccccCCCccccceeeeecccccccCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHHhc-cCCCCCCHH
Q 008538 44 LTQTNNLTFRNQYFLTNPSLKFKRLTVQASASAGAAVAPAPEQKPQQPWQGAALKPLIASIATGLILWFV-PVPSGVSKN 122 (562)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~lt~~ 122 (562)
|..+..++|.+||+..+|+|+|-.+... ++++++++ ++. |. ..
T Consensus 1 m~~s~~qAf~~NFLG~sP~WYKlai~~F----------------------------LiiNP~vf---ff~~Pf-----~a 44 (516)
T COG3067 1 MEISWGQAFWRNFLGQSPDWYKLAIIAF----------------------------LIINPLIF---FFISPF-----VA 44 (516)
T ss_pred CCCcHHHHHHHHhccCCCcHHHHHHHHH----------------------------HHHhhHHH---HhccHH-----HH
Confidence 4567889999999999999999965544 55666553 443 54 78
Q ss_pred HHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 008538 123 AWQLLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFV 202 (562)
Q Consensus 123 ~~~~l~i~~~~i~lw~~~~i~~~~~all~~~~l~~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~ 202 (562)
+|...+.|++++.+ ..+++|....+++++.. +..|..+++++.++...+.-++++-+||.++......+.-.+..+++
T Consensus 45 gWlLV~EFIfTLAM-ALKCYPLqPGGLLaieA-v~iGmt~p~~v~~Ei~aN~eVlLLL~FMVAGIyFMKqLLLfiFtklL 122 (516)
T COG3067 45 GWLLVAEFIFTLAM-ALKCYPLQPGGLLAIEA-VAIGMTSPEHVKEEVAANLEVLLLLMFMVAGIYFMKQLLLFIFTRLL 122 (516)
T ss_pred HHHHHHHHHHHHHH-HhhccCCCCCchHHHHH-HHHcCCCHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 88999988888888776 66788999999999999999999999999999998889888888887
Q ss_pred HHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHH---HHHHcCCCCC---------C-----------Ccch
Q 008538 203 KLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKS---LCLACGSNTG---------D-----------GTEH 259 (562)
Q Consensus 203 ~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~---i~~~~g~~~~---------~-----------~~~~ 259 (562)
-.. +++..+.+.+|+..+++|+|.|..++++ +.+.+..+ ++++.....+ | ++.|
T Consensus 123 l~i-RSK~~LSlaFc~~aAfLSAFLDALTVvA--VvISVavgFy~iYH~VaSg~~~~~~~D~~~D~~i~e~~~~~LE~fR 199 (516)
T COG3067 123 LSI-RSKMLLSLAFCVAAAFLSAFLDALTVVA--VVISVAVGFYGIYHRVASGRTESDDTDITDDSHIDEHYKVVLEQFR 199 (516)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHhhhhee--eeeeehhhhhhhhhhhccCCCcccccCccccccCChHHHHHHHHHH
Confidence 665 5677788899999999999999998876 45555443 4443221100 0 5667
Q ss_pred hhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCC-C
Q 008538 260 KLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSS-P 338 (562)
Q Consensus 260 ~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~-~ 338 (562)
.|.+.+++....++.+||.+|..|.|+|++++. + .++.|+||++.+.|.++..++++.+.|..+.|.+.... .
T Consensus 200 aFLRSLmMHagVGTALGGVmTmVGEPQNLiIa~---~---AgW~F~eFflrm~PVt~PV~i~GlltC~LvEKfr~FGYGa 273 (516)
T COG3067 200 AFLRSLMMHAGVGTALGGVMTMVGEPQNLIIAK---Q---AGWHFGEFFLRMAPVTVPVLICGLLTCLLVEKFRWFGYGA 273 (516)
T ss_pred HHHHHHHHhhccchhhcceeeeccCchhhhhhh---h---ccccHHHHHHHhcCchhHHHHHHHHHHHHHHHHhhccccc
Confidence 788899999999999999999999999999873 2 46999999999999999999999999988877655443 2
Q ss_pred ChhHHHHHHHH-----hcCCCChhHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH----hcCCChH---HHHh
Q 008538 339 DAPKLAQEKLE-----KMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLV----TGVVTWK---ECLA 406 (562)
Q Consensus 339 ~~~~~~~~~~~-----~~~~~~~~e~~~l~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~l----~g~~~~~---~~~~ 406 (562)
+.++..++.+. +..++++++|..+++..+.-+..+.+-..|+ +.++++|..++.+ .|+.|++ ++++
T Consensus 274 ~LP~~Vr~vL~~~d~~~~~krt~Qdk~kL~vQa~i~vwLvvgLAlHl--A~VGliGLsvIilaTsftGvt~EH~iGkAFq 351 (516)
T COG3067 274 TLPEKVRQVLQQFDDQSRHKRTRQDKIKLIVQAIIGVWLVVGLALHL--AEVGLIGLSVIILATSFTGVTDEHAIGKAFQ 351 (516)
T ss_pred cccHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHhhcCCcchhhhHHHHH
Confidence 33444443332 3345778889999888887776666654443 3366676655443 5777765 5667
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Q 008538 407 ESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSV 486 (562)
Q Consensus 407 ~~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~ 486 (562)
+..|+..++.+ .+++..++-+-.+..-+-+.......+... . +..+.-.+ .+.+.+|.-+..+-+.=.- -
T Consensus 352 EsLPFTALL~V--FFsvVAVIidQ~LF~PiIqfVL~a~~~~Ql--~----lfyifNGL-LS~iSDNVFV~TvYInE~k-~ 421 (516)
T COG3067 352 ESLPFTALLTV--FFSVVAVIIDQHLFSPIIQFVLQASEHAQL--S----LFYIFNGL-LSSISDNVFVGTIYINEAK-A 421 (516)
T ss_pred hcCcHHHHHHH--HHHHHHHHHHhhhhHHHHHHHHcCCcccch--h----HHHHHhhH-HHhhccceEEEEEEehhHH-H
Confidence 78887776543 455566666666666666665544333211 1 11111111 1234455432221111111 1
Q ss_pred HHHcC-CChHHHHHHHHHHHhhhhcc----cccccccchheecC-----CCcCHHHHHHHhHHHHHHHHHHHHH
Q 008538 487 ASALG-CPPYFVAMVLAFFSNLMGGL----THYGIGSAPVFYGA-----NYVPLAKWWGYGFIVSIVNIIIWLG 550 (562)
Q Consensus 487 a~~~G-v~p~~~~~~~~~~~~~~~~~----tp~~~~~n~i~~~~-----g~~~~~~~~k~g~~~~li~~vv~~~ 550 (562)
+...| +++..+ =.++.+.|.+.++ ||-|.......... -+.+++++.....|.+++.-.+...
T Consensus 422 Al~~G~is~~qf-elLaVAINTGTNLPSVATPNGQAAFLFLLTSalaPLiRLSYGRMV~MAlPYTlvl~~iGll 494 (516)
T COG3067 422 ALEAGAISLKQF-ELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGRMVWMALPYTLVLTLVGLL 494 (516)
T ss_pred HHHcCCcCHHhh-hHhhehhhcCCCCCcccCCCchhhHHHHHHhhhhHHHhhhhcceeeeeccHHHHHHHHHHH
Confidence 22223 233221 1122233333343 33332222221111 2578899999999998876665433
|
|
| >PRK11588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=205.05 Aligned_cols=359 Identities=11% Similarity=0.058 Sum_probs=243.5
Q ss_pred CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCC
Q 008538 173 PIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSN 252 (562)
Q Consensus 173 ~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~ 252 (562)
+++++++..-..-+.+++||..|....++.++.+++...++..++++..+.+...+...... .++|+.++++.++|+|
T Consensus 111 ~ii~filiiGG~f~vi~~TGAi~~~i~~l~~k~~~~~~llIpil~~lFsl~G~~~G~~Ee~i--~f~pi~v~l~~alGyD 188 (506)
T PRK11588 111 GIIMFMLVIGGAFGIVMRTGTIDNGILALIRKTRGNEILFIPVLFILFSLGGAVFGMGEEAI--AFAIIIAPLMVRLGYD 188 (506)
T ss_pred ceeehhhHHhhHHHHHHHhchHHHHHHHHHHHhCCCcEEeHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHHhCCc
Confidence 44444433333348999999999999999999988888888899999999998887766665 6999999999999999
Q ss_pred CCCCcchhhhHHHHHHHH-HHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHH--HHHHHHHHHHHHH
Q 008538 253 TGDGTEHKLGSWLMLTCF-QTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGL--VSLIVVPLLLYII 329 (562)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~-~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~l--i~~~~~~~~~~~~ 329 (562)
+. ...++. .++..| ..++..|+...+..++.+|.++.-+-++|....... ++..+.+.+..++
T Consensus 189 ~i----------vg~ai~~lg~~iG----f~~s~~NPftvgIAQ~iAglp~~SG~~~R~i~~~v~~~i~i~yv~~YA~kV 254 (506)
T PRK11588 189 SI----------TTVLVTYVATQIG----FATSWMNPFSVAIAQGIAGVPVLSGSGLRIVMWVIFTLIGLIFTMVYASRV 254 (506)
T ss_pred HH----------HHHHHHHHHhhhh----hcccccCccHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 64 322332 333333 345567888777778777777776666665433222 2222233333333
Q ss_pred cCCCCCCC-CChhHHHHHHHH--hcCCCChhHHHHHHHHHHHHHHHHhcCCC---C-CchHHHHHHHHHHHHHh------
Q 008538 330 YPPTVKSS-PDAPKLAQEKLE--KMGPMSTNEKIMAGTLLLTVGLWVFGGRL---N-VDPVTAAILGLSILLVT------ 396 (562)
Q Consensus 330 ~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~e~~~l~i~~~~i~l~i~~~~~---~-i~~~~vali~~~ll~l~------ 396 (562)
.|++.+.. .+.++..+++.+ +..+++.|+|..+.++++.+..++.+... + .|.....++..++..+.
T Consensus 255 kkdP~kS~~~~~~~~~~~~~~~~~~~~~t~r~klvL~~f~~~~~~~i~Gv~~~gW~~~Eia~~Fl~~giv~G~i~~~~~~ 334 (506)
T PRK11588 255 KKNPLLSRVHESDRFFREKQADVEQRPFTFGDWLVLLVLTAVMVWVIWGVVVNAWFIPEIASQFFTMGLVIGLIGVVFRL 334 (506)
T ss_pred cCCCcccccccchhhhhhhhccccccCcChhhHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 33322221 111111122211 12478999999999999999888876422 2 23333444444555454
Q ss_pred cCCChHHHHhccCC-----hhHHHHHHHHHHHHHHH-----HHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH
Q 008538 397 GVVTWKECLAESVA-----WDTLTWFAALIAMAGYL-----NKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSH 466 (562)
Q Consensus 397 g~~~~~~~~~~~i~-----w~~ll~~~~~~~l~~~l-----~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~ 466 (562)
+.++++|..+.-++ -...++++-+-.+...+ ++....|.+.+...+.+++.+. ......+.++..+++
T Consensus 335 ~g~~~~~i~~~f~~Ga~~m~~~aliig~A~~i~~il~~g~~~~g~iidTIv~~~~~~L~~lp~--~~~ai~m~i~~~~lN 412 (506)
T PRK11588 335 NGMTVNTMASSFTEGARMMLAPALLVGFAKGILLLLGGGEPGDPSVLNTILNSAGGAISGLPD--AVSAWFMLLFQSVFN 412 (506)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhccCCH--HHHHHHHHHHHHHHH
Confidence 57788876532222 12223333344455667 4555889999999988887643 445556677777888
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHH
Q 008538 467 YFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNII 546 (562)
Q Consensus 467 ~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~v 546 (562)
.+++|+++.+++++|++.|+++..|++|+...++..++.++...++|.+ +......+..++++++|+|+.+|+.++..+
T Consensus 413 ffIpSgSGqAaitmPIm~Plad~lGisrq~avlAfq~GDg~tNlI~Pts-~~lm~~Laia~Ipy~kW~Kf~~pl~~i~~v 491 (506)
T PRK11588 413 FFVTSGSGQAALTMPLMAPLADLVGVNRQVAVLAFQLGDGFTNIIYPTS-ASLMATLGVCRVDFGNWLKFIWRFLLLLFI 491 (506)
T ss_pred eEecChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHhhhhH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999876777753 222333467899999999999999988777
Q ss_pred HHHH
Q 008538 547 IWLG 550 (562)
Q Consensus 547 v~~~ 550 (562)
+..+
T Consensus 492 ~~~v 495 (506)
T PRK11588 492 MSSV 495 (506)
T ss_pred HHHH
Confidence 6544
|
|
| >PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-20 Score=194.21 Aligned_cols=365 Identities=12% Similarity=0.052 Sum_probs=259.6
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHH
Q 008538 164 SAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVK 243 (562)
Q Consensus 164 ~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~ 243 (562)
++.+++.++..+.-+-...++++.++++|+.||+.+......|+.+.++...-...+.+++...++..+.+ +.+..+.+
T Consensus 45 ~~~~~~~~s~~LlAIPlFil~G~lm~~~Gi~~rl~~~~~~lvG~~rGGLa~v~v~as~~fgaiSGSs~A~~-aaiG~i~i 123 (425)
T PRK15060 45 QTLVNGADSFSLLAIPFFVLAGEIMNAGGLSKRIVDLPMKLVGHKPGGLGYVGVLAAMIMASLSGSAVADT-AAVAALLV 123 (425)
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhchHHHHH-HHHHHHHH
Confidence 34556666666665555556699999999999999999999999999999999999999999999999887 47899999
Q ss_pred HHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHH
Q 008538 244 SLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVP 323 (562)
Q Consensus 244 ~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~ 323 (562)
+..+|.|||++ ...+...++ |.....+....+.++++... +.|.++-+..++.|+++......
T Consensus 124 P~M~k~GY~~~----------~aag~~aas--g~lG~lIPPSi~mIiy~~~~-----~~Si~~LF~AGiiPGll~~~~~~ 186 (425)
T PRK15060 124 PMMRSANYPVN----------RAAGLIASG--GIIAPIIPPSIPFIIFGVSS-----GLSISKLFMAGIAPGIMMGATLM 186 (425)
T ss_pred HHHHHcCCCHH----------HHHHHHHHh--ccCCccCCcHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999975 323333332 33334454445566666532 47999999999999998777776
Q ss_pred HHHHHHcCCCCCCCCChh-HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH--HhcCCC
Q 008538 324 LLLYIIYPPTVKSSPDAP-KLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILL--VTGVVT 400 (562)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~~l~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~--l~g~~~ 400 (562)
.+.+.+.||+. .++.+ ...+|..+ ..++....+.+.++.+.....+..+..|.+.++.+.+.++. +.|.++
T Consensus 187 ~~~~~~a~~~~--~~~~~~~~~~~~~~----~~~~a~~~l~~pviilggI~~Gi~TpTEAaava~~yal~v~~~iyr~l~ 260 (425)
T PRK15060 187 LTWWWQASRLN--LPRQPKATMREIWQ----SLVSGIWALFLPVIIIGGFRSGLFTPTEAGAVAAFYALFVAVVIYREMT 260 (425)
T ss_pred HHHHheeecCC--CCCCCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHcCcC
Confidence 66666555432 12111 01111111 11233344555555555556666666777777776666653 357788
Q ss_pred hHHHHh---cc--CChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHH
Q 008538 401 WKECLA---ES--VAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAH 475 (562)
Q Consensus 401 ~~~~~~---~~--i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~ 475 (562)
+|+..+ +. ..-.+.++++++..+++.++.+|+.+.+++.+.+..++ +..++++..+..+....|++.++.
T Consensus 261 ~~~l~~~l~~t~~~t~~i~~ii~~a~~f~~~lt~~gvp~~i~~~i~~~~~~-----~~~~Ll~i~~~~lvlGmfld~~a~ 335 (425)
T PRK15060 261 FSTLYHVLINAAKTTSVVMFLVASAQVSAWLITIAELPMMVSDLLQPLVDS-----PRLLFIVIMVAIMVVGMVMDLTPT 335 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHHHhhhHHHH
Confidence 887542 11 12345667788999999999999999999999876321 223334444444555679999999
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008538 476 IGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVW 555 (562)
Q Consensus 476 ~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~~~ 555 (562)
..++.|++.|++++.|+||.++...+.+..++ +.+||.-.....+..+..+.+..|.+|..+|+.++.+++..++ .+
T Consensus 336 ili~~Pil~Pi~~~~Gidpv~fgii~~~~~~i-g~iTPPvG~~lfv~~~ia~~~~~~i~~~~~Pf~~~~~~~l~l~--~~ 412 (425)
T PRK15060 336 VLILTPVLMPLVKEAGIDPIYFGVMFIINCSI-GLITPPVGNVLNVISGVAKLKFDDAVRGVFPYVLVLYSLLVLF--IF 412 (425)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH-hCCCCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 99999999999999999999999999988887 7888776555455556678999999999999998888776554 45
Q ss_pred HHHhh
Q 008538 556 WKFIG 560 (562)
Q Consensus 556 w~~~G 560 (562)
|+-+-
T Consensus 413 ~P~l~ 417 (425)
T PRK15060 413 IPELI 417 (425)
T ss_pred hHHHH
Confidence 55443
|
|
| >TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-21 Score=200.11 Aligned_cols=366 Identities=14% Similarity=0.063 Sum_probs=249.4
Q ss_pred hccCChhHHHHHHHHHHHh-cCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHH
Q 008538 139 AQPLPLGAVALLGLGASVL-TKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLV 217 (562)
Q Consensus 139 ~~~i~~~~~all~~~~l~~-~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~ 217 (562)
.+.+..+..+.++...+.+ +|. +| +..++++++++++.....+.+++||..|+..+++.++.++++++..+.+.
T Consensus 15 ~gg~~~g~~g~~g~~~~~~~~~~-~~----~~~~~~vI~~il~vgg~~~vl~~TGaid~~v~~~~k~~~~~~~~~~llip 89 (430)
T TIGR00770 15 LGGIGLGYAGGLGVLILCFGFGL-KP----GKIPFDVILIIMAVIAAIAAMQAAGGLDYLVQIAEKLLRRNPKYITILAP 89 (430)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCC-CC----CCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCcchhhhhHH
Confidence 3446667666666666555 464 43 35789999999999999999999999999999999998888888888888
Q ss_pred HHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhh
Q 008538 218 FSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNT 297 (562)
Q Consensus 218 ~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~ 297 (562)
+++.++|.+.+|..... .+.|+..++++++|+||. +.+ .....++++|+..+++++++|.. .+.++
T Consensus 90 ii~~lfs~~~g~~~~~l--~f~PI~i~la~~lG~d~i--------~~~-ai~~~aa~iG~~as~in~~~~~~-ig~~~-- 155 (430)
T TIGR00770 90 SVTYFLTILAGTGHVVY--STLPVIAEVAKEQGIKPE--------RPL-SLAVVSSQIAITASPVSAAVVFM-SAILE-- 155 (430)
T ss_pred HHHHHHHHHhchHHHHH--HHHHHHHHHHHHhCCCCh--------hHH-HHHHHHHHHHHHhhcccHHHHHH-HHHHH--
Confidence 88999999988876665 799999999999999986 233 45678899999999997754444 44332
Q ss_pred cCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHH-HHHH-----HhcCCCChhHHHHHHHHHHHHHH
Q 008538 298 INQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLA-QEKL-----EKMGPMSTNEKIMAGTLLLTVGL 371 (562)
Q Consensus 298 ~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~e~~~l~i~~~~i~l 371 (562)
+.++++.+++....|..++.+++..++.+++.| |.++.|+.++.. +++. ++..++++|+|..+.+|++.+..
T Consensus 156 -~~Gi~f~~~l~~rip~~~v~l~v~~~~v~~y~~-kvkkdP~~~~~~~~~~~~~~~~~~~~~~t~r~k~~l~~f~~~~~~ 233 (430)
T TIGR00770 156 -PLGIEYLDLLMVTIPSTFLGCMLTAFFVNFFGK-KLDKDPEYQERLKAGKIVPTRGKKEKETSKSAKLSVWIFLGGVVA 233 (430)
T ss_pred -hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCChhhhhhhhhhhhcccccccccCCCHhHHHHHHHHHHHHHH
Confidence 235899999999999998877776665444433 333333311111 1111 11236889999999999988875
Q ss_pred HH-hcCC----CCC---c-------hHHHHHHHHHHHHHhcCCChHHHHhc--cCChhHHHHHHHHHHHHHHHHH---hC
Q 008538 372 WV-FGGR----LNV---D-------PVTAAILGLSILLVTGVVTWKECLAE--SVAWDTLTWFAALIAMAGYLNK---YG 431 (562)
Q Consensus 372 ~i-~~~~----~~i---~-------~~~vali~~~ll~l~g~~~~~~~~~~--~i~w~~ll~~~~~~~l~~~l~~---tG 431 (562)
.+ ++.. .+. + .....+..+++..+.+.++.+|.. + ..--+.--++.+ +.++. +++ ..
T Consensus 234 ~vi~G~~~~~~~~~~~~~~~~~~~~i~~~fl~~~i~~g~i~~~~~~~i~-~~~~F~~G~~~~~~~-iG~A~-~~~~~~g~ 310 (430)
T TIGR00770 234 VVLYAAAISKRPGFVGKPILGMDHAIVMFMLSVATLIIIFCKIDTDAIL-KSSVFKSGMQACICV-LGVAW-LGDTFVSN 310 (430)
T ss_pred HHHHHhcccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhCCCHHHcc-cHHHHHHHHHHHHhe-eeehh-hhhhhHHH
Confidence 53 4432 121 1 112335555666667888888865 3 222122222222 44555 444 47
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcc
Q 008538 432 LITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGL 511 (562)
Q Consensus 432 ~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~ 511 (562)
+.|.+.+.+.+.+++.| ......+.++.. .+.| .+++++ ++.|+++..|++++..+.+.+++.+. ++
T Consensus 311 i~dtIv~~l~~~l~~~p---~~~a~~mf~~~~----~i~s---QAa~tm-im~PLad~lGi~rq~~Vlafq~gdG~--~i 377 (430)
T TIGR00770 311 HIDEIKGYAGELIEGYP---WLLAVALFLASM----LLYS---QAATAK-ALIPVALALGVSPYTIVASFAAVSGL--FV 377 (430)
T ss_pred HHHHHHHHHHHHHhhCc---HHHHHHHHHHHH----HHhh---HHHHHH-HHHHHHHHcCCCHHHHHHHHHHhccc--EE
Confidence 99999999999998863 222222333322 2323 333333 59999999999999999999998863 66
Q ss_pred cccccccchheecCCCcCHHHHHHHhHHHHH
Q 008538 512 THYGIGSAPVFYGANYVPLAKWWGYGFIVSI 542 (562)
Q Consensus 512 tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~l 542 (562)
+|.+ +.-.-..+..++++++|.|+.+|...
T Consensus 378 ~PTs-g~lma~l~~a~i~~~kw~Kfi~~~~~ 407 (430)
T TIGR00770 378 LPTY-PTLLAAIQMDDTGTTKIGKFVFNHSF 407 (430)
T ss_pred cCCc-HhHhHHHhccCCCcchHHHHHhchHH
Confidence 6642 22233356789999999999999544
|
These proteins are members of th C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most proteins in this family have 12 GES predicted transmembrane regions; however one member has 10 experimentally determined transmembrane regions with both the N- and C-termini localized to the periplasm. The two Escherichia coli proteins, DcuA and DcuB, transport aspartate, malate, fumarate and succinate, and function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively. |
| >COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-19 Score=178.62 Aligned_cols=351 Identities=17% Similarity=0.079 Sum_probs=250.3
Q ss_pred HHHHHHHHHH-HHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCC
Q 008538 175 PWLIALAFFF-ARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNT 253 (562)
Q Consensus 175 i~~~~g~~~l-~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~ 253 (562)
.++-...|++ +..+++.|+.||+.+...+.+|+.+.++...-...+.+.+...+|..+.+ +.+..+..+..++.|||+
T Consensus 9 ~LlAiPfFIlaG~lM~~gGi~~Rli~fa~a~vGh~rGGL~~v~i~~s~lf~~iSGSa~Ad~-aa~Gsi~ip~M~k~GY~~ 87 (379)
T COG1593 9 SLLAIPFFILAGELMNSGGIAKRLIDFANALVGHIRGGLAYVNIVASMLFGGISGSAVADA-AALGSILIPEMKKRGYPA 87 (379)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHhCCccchHHHHHHHHHHHHhcccccHHHHH-HHHHHHhHHHHHHcCCCH
Confidence 3344445554 68899999999999999999999999999999999999999999999887 478999999999999997
Q ss_pred CCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCC
Q 008538 254 GDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPT 333 (562)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~ 333 (562)
+ ..-++. ++.+.....+..+.+.++.|... +.|.++.|..|..+++...+....+.|++.|++
T Consensus 88 ~----------~aa~l~--a~s~~ig~lIPPSi~~IIyg~~a-----~~SI~~LF~aGi~PGlLl~~~lm~~~~~~a~~~ 150 (379)
T COG1593 88 A----------FAAALT--AASGIIGPLIPPSIPFIIYGVAA-----GVSIGKLFVAGIVPGLLLTLALMVVAYIVARKR 150 (379)
T ss_pred H----------HHHHHH--HhhccccccCCCCchHHHHHHhc-----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6 222222 22222233343345667776532 378899999999999987777777777766665
Q ss_pred CCCCCChhHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH--HhcCCChHHHHh---cc
Q 008538 334 VKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILL--VTGVVTWKECLA---ES 408 (562)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~--l~g~~~~~~~~~---~~ 408 (562)
..+.++ + ...+|..+..++..+.+...++.+.+...+.++..|...++..-+.+.. +.+-++++|..+ +.
T Consensus 151 ~~~~~~-~----~s~~e~~~~~~~a~~aLllpvIIigGi~~G~fTpTEaa~iav~yal~v~~~vYr~l~~~~l~~~l~~a 225 (379)
T COG1593 151 GYPREE-R----ASFKERLKAAVKALWALLLPVIIIGGIRSGIFTPTEAAAIAVLYALLVGAFVYRELTLKELPKVLLEA 225 (379)
T ss_pred CCCccc-C----CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 432111 1 1111211112344455666666666666666667777666665555443 346667776542 22
Q ss_pred --CChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Q 008538 409 --VAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSV 486 (562)
Q Consensus 409 --i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~ 486 (562)
..-.++++++++-.++..++.+++.+.+++++.+..++ +..++++..+..+....|+|.++...++.|++.|+
T Consensus 226 ~~~t~~Vm~iva~a~~f~~~lt~~~vp~~la~~~~~~~~~-----~~~~ll~inl~llvvG~fmd~~a~ilil~Pil~Pi 300 (379)
T COG1593 226 VKTTAVVMFIVAAAAAFAWLLTVEQVPQQLADWLLSLSDS-----PLVVLLVINLLLLVVGTFMDLTAAILILTPILLPI 300 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 22345677888999999999999999999999987543 22334444444455568999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008538 487 ASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGV 554 (562)
Q Consensus 487 a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~~ 554 (562)
+.+.|+||.++...+.+..++ +.+||.-...-.+..+.++.+..+..|..+|+.+..++...++.+.
T Consensus 301 ~~~~GIDPvhfGvv~v~Nl~I-GliTPPvG~~Lfv~s~V~~~~~~~~~k~i~Pfl~~~~~~L~li~~~ 367 (379)
T COG1593 301 AAALGIDPVHFGVVFVLNLSI-GLITPPVGMVLFVASAVGKVPIEAVIKAILPFLVALILVLLLITYF 367 (379)
T ss_pred HHHhCCCceeeHHHHHHHHHh-hCCCCCcchhHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988 5666554333344456688999999999999999888877665543
|
|
| >PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-19 Score=188.79 Aligned_cols=355 Identities=16% Similarity=0.126 Sum_probs=250.5
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHH
Q 008538 168 SAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCL 247 (562)
Q Consensus 168 ~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~ 247 (562)
+..++.+..-+....++++.++++|..|++.+...+..|+.+.+......+.+.+.+...++.++.+ +.+.++.++..+
T Consensus 48 ~~~~~~~l~aiplFil~G~ll~~~gi~~~l~~~~~~~~g~~~Ggla~~~v~as~~fgaisGS~~A~~-a~~G~i~iP~M~ 126 (416)
T PF06808_consen 48 SGLDSFTLLAIPLFILMGELLERSGIADRLIDFANALVGRVRGGLAQVAVVASALFGAISGSSVANA-AAIGSITIPEMK 126 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCccchhHHHHHHHHHHHhccchHhHH-HHHHHHHHHHHH
Confidence 4444444444444455699999999999999999999999999999999999999999999999887 478999999999
Q ss_pred HcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHH
Q 008538 248 ACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLY 327 (562)
Q Consensus 248 ~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~ 327 (562)
|.|||++ ...+...+++..|.. ++...+.++.+.. . .++|+.+.+..+..|+++..+....+.+
T Consensus 127 k~GY~~~----------~A~av~aasgtlG~l--iPPsi~~ii~~~a--~--~~~si~~lf~agiiPgll~~~~~~~~~~ 190 (416)
T PF06808_consen 127 KAGYPPE----------FAAAVIAASGTLGQL--IPPSIGMIIYGMA--V--TGVSIGDLFIAGIIPGLLLALGLMIYVY 190 (416)
T ss_pred HcCCCHH----------HhHHHHhhccccchh--cchHHHHHHHHHh--h--ccchHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 9999976 333333333333333 3223334444431 2 3589999999999999987777777776
Q ss_pred HHcCCCCCCCCChhHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH--hcCCChHHHH
Q 008538 328 IIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLV--TGVVTWKECL 405 (562)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~l--~g~~~~~~~~ 405 (562)
...||+..+. +.+++. +|..+..++.+..+.+.++.+.....+.....|.+.++.+.++++.. .+..++||..
T Consensus 191 ~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~l~~p~iil~~i~~g~~t~teaa~~~~~~~l~i~~~~~~~~~~~~l~ 265 (416)
T PF06808_consen 191 FIARKPGLPP-EPRASL----KERWRAFKRAIPALLIPVIILGGIYLGIFTPTEAAAVAVVYALVIGLFVYRRLSWKDLW 265 (416)
T ss_pred heeeccccCc-cccchH----HHHHHHHHhcchHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHHhhhcccChhhhh
Confidence 6666443221 211111 11111123334455666655555666655566666666665555544 4778888754
Q ss_pred hccC------ChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHH
Q 008538 406 AESV------AWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAM 479 (562)
Q Consensus 406 ~~~i------~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il 479 (562)
+.. .-.+.+++++...+++.++.+|+.+.+++.+.+..++ ...++++..+..+....+++.++...++
T Consensus 266 -~~l~~~~~~~~~i~~iia~a~~~~~~l~~~g~~~~i~~~i~~l~~~-----~~~~l~l~~l~~lilG~~m~~~a~~ii~ 339 (416)
T PF06808_consen 266 -RALVETARTTGMILFIIAAAGIFSWVLTLTGVPQAIAEFILSLSGS-----PWLVLLLIMLILLILGMFMDTTAAIIIV 339 (416)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCcc-----hHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 222 2345677788889999999999999999999876433 1223334444445556899999999999
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHH
Q 008538 480 FTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGV 551 (562)
Q Consensus 480 ~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~ 551 (562)
.|++.|+.++.|+||.++.+.+.+...+ +.+||.-.....++.+..+.+..|..|..+|+..+......++
T Consensus 340 ~pi~~P~~~~~Gidpi~~g~~~~~~~~i-g~iTPPvgl~lfva~~ia~~~~~~i~~~~~Pf~~~~~~~l~li 410 (416)
T PF06808_consen 340 APILAPIAQALGIDPIHFGVFMFYNAEI-GLITPPVGLNLFVAAGIAGVPMEKIFRGILPFIFVLLVALLLI 410 (416)
T ss_pred HHHHHHHHHHhCcchhhHHHHHHHHHHh-cCCCCCccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987 7888775555555566678999999999999998877666554
|
In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins. |
| >PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-19 Score=191.36 Aligned_cols=361 Identities=13% Similarity=0.091 Sum_probs=224.1
Q ss_pred CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCC
Q 008538 173 PIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSN 252 (562)
Q Consensus 173 ~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~ 252 (562)
+.+++++......+.++++|..|...+.+.|+.+++...++...+.........+....+.+ .+.|+..+++.++|+|
T Consensus 79 ~ii~~I~~igG~~~vm~~tGA~~~~v~~l~k~l~~~~~~~I~i~~~~f~~~~~~~g~~~~~i--~~~~il~pi~~alG~d 156 (465)
T PF03606_consen 79 GIIFFIMIIGGFFGVMNHTGAIDALVNLLIKPLKGKKNPLIPILMFFFSGGGLTIGIPEEAI--AFMPILIPILIALGYD 156 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHcCCC
Confidence 45555555556669999999999999999999987766666665554444443343333334 6899999999999999
Q ss_pred CCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHH----HH
Q 008538 253 TGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLL----YI 328 (562)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~----~~ 328 (562)
+. ...+..+.+...|...+ +.|+...+..++..| ++..+++.....+..+..++...+. .+
T Consensus 157 ~~----------~a~a~v~~~~~~g~~~~---~~npf~~~iAq~iag--lp~~sg~~~r~i~~~i~~~i~~~~~~~ya~k 221 (465)
T PF03606_consen 157 PI----------TAAAAVILGAGAGFAGP---PSNPFTVGIAQKIAG--LPLFSGFWFRQIPFVIFTLIAIAYVHRYAQK 221 (465)
T ss_pred HH----------HHHHHHHHHHHHhhcCC---ccChHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 22233333332333334 444444444455534 5555665555444443333333222 22
Q ss_pred HcCCCCCCC-CChhHHHHHHHH-hcCCCChhHHHHHHHHHHHHHHHHhc---CCCC--C--c-hHHHHHHHHHHHHHhc-
Q 008538 329 IYPPTVKSS-PDAPKLAQEKLE-KMGPMSTNEKIMAGTLLLTVGLWVFG---GRLN--V--D-PVTAAILGLSILLVTG- 397 (562)
Q Consensus 329 ~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~e~~~l~i~~~~i~l~i~~---~~~~--i--~-~~~vali~~~ll~l~g- 397 (562)
+.|++.++. .+.++..+++.+ +.++++.++|..+.++++.+++.+.+ ...+ . + ....+++..++..+.+
T Consensus 222 v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~li~g~~~~~~~~~~~~~~~~~~fl~~~ii~~~i~~ 301 (465)
T PF03606_consen 222 VKKDPSYSEVYEDDEAEEEEEEEQEEKLTKRPKLYLLLPVLPFVLLIYGFSFVIIKIKWYFPEIAALFLIIGIIIGLIRH 301 (465)
T ss_pred HHhcccchhhhhhHHhhhhcccccccccccccceeehHHHHHHHHHHhchhhhhccccccHHHHHHHHHHHHHHHHHHHh
Confidence 222221111 111111111111 11235678888888888888887775 1111 2 2 2333444445555555
Q ss_pred --CCChHHHHhccCC-hhH----HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhc
Q 008538 398 --VVTWKECLAESVA-WDT----LTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFA 470 (562)
Q Consensus 398 --~~~~~~~~~~~i~-w~~----ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~ 470 (562)
..+.+|..++-++ -+. -+.++-+.+....+++.+..|.+.+.+....++.+. ....+.+.++..+..+...
T Consensus 302 ~~~~~~~~~~~~F~~G~~~~~~~a~vVgla~ai~v~~~~~~i~~tI~~~~~~~l~~~~~--~~~~~~m~~~~~~~~fli~ 379 (465)
T PF03606_consen 302 RSGKSPNEIVKAFFKGMGDMLSFALVVGLARAISVFMEGGKIIDTIVHLLSNLLSGLPG--VIAAIGMFLIQFLINFLIG 379 (465)
T ss_pred hccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHeeecC
Confidence 6666665532222 111 222222334444567788899999999888776543 3333445555666677889
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHH
Q 008538 471 SGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLG 550 (562)
Q Consensus 471 sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~ 550 (562)
|+++.+..++|++.|+++..|++++..+++.+++++++..++|.+ +.-....+..++++.||+|+.+|..++..++..+
T Consensus 380 SGsg~a~~~mpim~plad~~Gi~~q~~vla~q~g~gl~n~isPts-g~~m~~l~ia~V~~~~w~K~~~~~~~~~~v~~~v 458 (465)
T PF03606_consen 380 SGSGQAAAFMPIMPPLADLLGITRQTAVLAFQFGDGLGNSISPTS-GVLMAVLGIAKVSYGKWVKRTWPPMLIWFVLSIV 458 (465)
T ss_pred CchHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhccchH-HHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988888764 2223345678999999999999999998888766
Q ss_pred HHH
Q 008538 551 VGG 553 (562)
Q Consensus 551 ~~~ 553 (562)
..+
T Consensus 459 ~l~ 461 (465)
T PF03606_consen 459 FLI 461 (465)
T ss_pred HHH
Confidence 443
|
Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane |
| >COG2851 CitM H+/citrate symporter [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-19 Score=175.69 Aligned_cols=386 Identities=16% Similarity=0.133 Sum_probs=265.1
Q ss_pred HhccCChhHHHHHHHHHHHh---cCCCCHHHHH-hhcCC--CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchh
Q 008538 138 IAQPLPLGAVALLGLGASVL---TKTLTFSAAF-SAFGD--PIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLG 211 (562)
Q Consensus 138 ~~~~i~~~~~all~~~~l~~---~g~~~~~~v~-~~~~~--~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~ 211 (562)
.++++.+-+.-.+......+ +|+.+..|.+ ++..+ ++..+++...++.+.+.++|++|.+.+++++..++++..
T Consensus 18 m~kk~sp~iAli~vPiv~ALi~gfgv~~lg~m~~~Gi~~va~t~imlmFAILfFgIM~DsGLFdPli~~il~~~kgdp~k 97 (433)
T COG2851 18 MTKKLSPIIALILVPIVFALIAGFGVTGLGEMMLDGIKSVAPTAIMLMFAILFFGIMIDSGLFDPLIRKILSIVKGDPVK 97 (433)
T ss_pred HhcccchHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcCCcee
Confidence 56666544433333333333 2333444433 44433 677888888888999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHH
Q 008538 212 LGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSA 291 (562)
Q Consensus 212 ~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~ 291 (562)
+.....+++.+.|.=.+.+++.. +-.|-.+++++++|.+|. .+..+...++.-...+|.|+|..-.++
T Consensus 98 V~igTavla~~v~LDGdGatTfl--Iti~A~LPlYkrLgmn~~----------~l~~l~~ls~gvmN~~PWGGPt~Raas 165 (433)
T COG2851 98 VVIGTAVLAAVVSLDGDGATTFL--ITIPALLPLYKRLGMNPY----------LLALLATLSAGVMNMLPWGGPTARAAS 165 (433)
T ss_pred eeHHHHHHHHHhhccCCCceEEE--eeHHhHhHHHHHcCCcHH----------HHHHHHHHhhhheecCCCCCcHHHHHH
Confidence 99999999999986666666554 678888999999999874 333333323222337899998866655
Q ss_pred HHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChh--HHHHHH---HHhcCCCChhHHHHHHHHH
Q 008538 292 TLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAP--KLAQEK---LEKMGPMSTNEKIMAGTLL 366 (562)
Q Consensus 292 g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~e~~~l~i~~ 366 (562)
.. +.+-.|.|....|.-++++++...+.|++-|+|+|+....+ ++.++. .++..+..+|+|..+.-.+
T Consensus 166 ~L-------g~d~~el~~pliP~~i~Gl~~vl~lA~~lG~kErkRlg~~~~~~~~~~~~~~~~~~~~~~~rpkl~W~N~l 238 (433)
T COG2851 166 VL-------GVDPAELFVPLIPIQIIGLVLVLALAWLLGKKERKRLGVIDLSEELEQLVELSEEDQEELKRPKLFWFNLL 238 (433)
T ss_pred Hh-------CCCHHHHHhhhhHHHHHHHHHHHHHHHHhhHHHHHHhhhccCchhhhhccccCCchhhhhhccHHHHHHHH
Confidence 42 35567999999999888888888888888777766542211 111111 0111111345666665555
Q ss_pred HHHHH---HHhcCCCCCchHHHHHHHHHHHHHhcCCChHHHHhccCC------hhHHHHHHHHHHHHHHHHHhCHHHHHH
Q 008538 367 LTVGL---WVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLAESVA------WDTLTWFAALIAMAGYLNKYGLITWFS 437 (562)
Q Consensus 367 ~~i~l---~i~~~~~~i~~~~vali~~~ll~l~g~~~~~~~~~~~i~------w~~ll~~~~~~~l~~~l~~tG~~~~la 437 (562)
+++.+ .+.+. .++....+++..+....+..+.||.. |++. ..+..++.++..+.+.++.||..|.++
T Consensus 239 Ltl~lm~~Lv~gi---~p~~~lFmig~~iAL~vNYP~vk~Q~-~ri~aha~nal~vvs~i~AAGif~Gil~gtgMvdama 314 (433)
T COG2851 239 LTLALMGLLVSGI---FPPGVLFMIGFAIALPVNYPNVKEQM-ERIGAHAGNALMVVSLIFAAGIFLGILSGTGMVDAMA 314 (433)
T ss_pred HHHHHHHHHHhcc---cchhHHHHHHHHHHHHhCCCCHHHHH-HHHHHhCcchhHHHHHHHHHHHHhhhhCCCchHHHHH
Confidence 54443 33333 67888899999888888877777643 4443 223445555666779999999999999
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccc
Q 008538 438 QTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIG 517 (562)
Q Consensus 438 ~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~ 517 (562)
..+.+...+. ..+ .+-++..+..+-.++++||++...-..|++.+.+.+.|++|...+.+..++..+ .+++|.. |
T Consensus 315 ~si~~vIP~~-lgp--yl~~ivgl~svP~tf~~snDAyYfGvlPIv~e~as~yGv~pv~~A~AsiiGq~v-h~lSPlv-P 389 (433)
T COG2851 315 KSIVSVIPDA-LGP--YLPLIVGLLSVPFTFFMSNDAYYFGVLPIVAEAASAYGVEPVEIARASIIGQPV-HFLSPLV-P 389 (433)
T ss_pred HHHHHhCcHh-hcc--hHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHcCCCHHHHHHHHHhCCcc-eeeccch-H
Confidence 9999887653 211 223333444445678999999999999999999999999999888887777665 6777763 5
Q ss_pred cchheecCCCcCHHHHHHHhHHHHHHHHHHHHHH
Q 008538 518 SAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGV 551 (562)
Q Consensus 518 ~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~ 551 (562)
......|..+++++|+.|+.+...+...++..+.
T Consensus 390 at~LlvgLa~v~~gdh~k~a~~wa~~~siv~l~~ 423 (433)
T COG2851 390 ATYLLVGLAKVDMGDHQKFALKWAWGISIVMLAI 423 (433)
T ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 5566778889999999998888776655554443
|
|
| >TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-18 Score=177.49 Aligned_cols=354 Identities=14% Similarity=-0.006 Sum_probs=224.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhC--CCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHh
Q 008538 164 SAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFG--SSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPI 241 (562)
Q Consensus 164 ~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g--~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi 241 (562)
++.+++-..++-..++....+++.|++.|..|.+.+.+.|..+ ++|..+.....+++.++|...++.+..+ .+..|.
T Consensus 12 ~~~~~~~~~~~g~~i~~~~gf~~~M~~~G~~~~lv~~~~k~~~~~~~p~~v~~~t~~i~~~~~l~~~sat~~~-li~~~~ 90 (388)
T TIGR00771 12 LRMLSNRIAGLGLSIMAVGGYARYMERIGASRAMVSLLSRPLKLIRSPYIILSATYVIGQIMAQFITSASGLG-MLLMVT 90 (388)
T ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhhccCcHHHHH-HHHHHH
Confidence 3445666678888888888999999999999999999999998 8999999999999999999999999884 378899
Q ss_pred HHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhc-ccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHH-HHH
Q 008538 242 VKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSS-MFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGL-VSL 319 (562)
Q Consensus 242 ~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~-~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~l-i~~ 319 (562)
.+++.++.|++|. ...++ .++.++. ..|.+++ ...+. +. .+.+..|++.....++. .++
T Consensus 91 l~P~l~~~G~~~~----------~aaav--ia~~~~l~i~P~~~~---~~~aa--~~--~~~~~~~~~~~~~ip~~i~~i 151 (388)
T TIGR00771 91 LFPTLVSLGVSRL----------SAVAV--MASPGSIHSAMISEM---SGLAA--QQ--VNMSHAPYNFHYMLPGAIGAI 151 (388)
T ss_pred HHHHHHHcCCCHH----------HHHHH--HHhhhcccCCCcchH---HHHHH--HH--hCCCHHHHHHHhHHHHHHHHH
Confidence 9999999999875 22222 2222232 3333332 22221 11 24677785555555544 444
Q ss_pred HHHHHHHHHHcCCCCCCCCChhHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHhcCCCC---CchHHHHHHHH-----H
Q 008538 320 IVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLN---VDPVTAAILGL-----S 391 (562)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~i~~~~i~l~i~~~~~~---i~~~~vali~~-----~ 391 (562)
+......+++.|+++|+....+++ +.+.+|. +.+++-.+.+..+...+++.++..... .+....+.++. +
T Consensus 152 ~~~~~~~~~~~k~~~kr~~~~~~~-~~~~~~~-~~~~~~~~allpl~p~iil~l~~g~~t~~~~~~~~~~~v~v~~~~~l 229 (388)
T TIGR00771 152 ILTAIAHFFKQRGEDKKQAYIAHE-KESEIKV-IEGVPVLYAILPLIPLIILLLFIGGTGLQQVPLHEWTKMGVPQAMLI 229 (388)
T ss_pred HHHHHHHHHHhcccchhccccccc-ccccchh-hcccchHHHHHHHHHHHHHHHHhccccccCCCccHHHHHHHHHHHHH
Confidence 444444455545443332111110 0011111 111122223322222222223444322 33233333332 2
Q ss_pred HHHHhcCCChHHHHhc-------c--CChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 008538 392 ILLVTGVVTWKECLAE-------S--VAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLY 462 (562)
Q Consensus 392 ll~l~g~~~~~~~~~~-------~--i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~ 462 (562)
...+.+..++++..++ . ..-.++.++.++..+++.++.+|+.|.+++.+.+... + +. ...++..+.
T Consensus 230 ~~~~~r~~n~~~~~~~~~~~~~~~a~~~~~v~~iI~aA~vF~~~L~~~Gi~~~l~~~l~~~~~--~--~~-~~ll~~~l~ 304 (388)
T TIGR00771 230 GAEFGRIVNRISPVKITEEFFNGMGNSFANVVGLIVAASVFAAGLKTIGAVDAAISFAKESGL--G--NI-FVMWGATIG 304 (388)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHcCC--C--HH-HHHHHHHHH
Confidence 2223455666654311 1 1134577888899999999999999999999987621 1 12 223333333
Q ss_pred HHHHHHhc-hhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHH
Q 008538 463 FYSHYFFA-SGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVS 541 (562)
Q Consensus 463 ~l~~~~~~-sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~ 541 (562)
......++ |+++....+.|++.|++++.|+||.++..++.++.+++ ..+|.-++...+..+..+++..|.+|...|..
T Consensus 305 ~~~lg~~~~s~~a~~~~~~PIl~pia~~~Gidpv~~gi~~~i~~~iG-~~tpPv~~~l~v~~gia~v~~~~i~k~~~~p~ 383 (388)
T TIGR00771 305 PFLMALITGSGNAPFIAFNTAIPPHAVELGYTHVNLGMPMAIAGALG-RTASPIAGVVVVCAGLAMVSPFEVVKRTAPPM 383 (388)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh-CcCCcHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 33344577 68999999999999999999999999999999999884 55555455556667778999999999999988
Q ss_pred HHHH
Q 008538 542 IVNI 545 (562)
Q Consensus 542 li~~ 545 (562)
++..
T Consensus 384 ~~~~ 387 (388)
T TIGR00771 384 IVGV 387 (388)
T ss_pred HHhc
Confidence 7654
|
catalyzing fumarate-succinate exchange and fumarate uptake. |
| >PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-17 Score=173.03 Aligned_cols=359 Identities=14% Similarity=0.129 Sum_probs=225.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCC--CchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHc
Q 008538 172 DPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGS--SSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLAC 249 (562)
Q Consensus 172 ~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~--~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~ 249 (562)
......++....++..++++|..|.+.+...+-.++ +|..++...++++.+++.+++|..... ..+.-+.+++.++.
T Consensus 77 ~~lGl~Im~~~gFa~yM~~iGa~~~lv~l~~~pl~~ir~p~~~l~~~~l~~~~~~~~i~Sa~glg-~~lm~~l~Pvl~~~ 155 (455)
T PRK10654 77 GDLGMMIMMLCGFAAYMTHIGANDMVVKLASKPLQYINSPYLLMIAAYFVACLMSLAVSSATGLG-VLLMATLFPVMVNV 155 (455)
T ss_pred ccHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHhC
Confidence 456666777777889999999999999888877653 567788888999999999999888765 35677777788999
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHH-hHHHHHHHHHHHHHHHH
Q 008538 250 GSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAA-IVPGLVSLIVVPLLLYI 328 (562)
Q Consensus 250 g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~-~~~~li~~~~~~~~~~~ 328 (562)
|++|. ...+ ..++..|-...|..+ .|..+++. .+++..|++... .|..++.+++.....++
T Consensus 156 Gv~~~----------~aa~-v~~~~~g~~~~P~s~-~~~laA~~------~g~~~~~~~~~~~~p~~i~~~i~~~i~~~~ 217 (455)
T PRK10654 156 GISRG----------AAAA-ICASPAAIILSPTSG-DVVLAAEA------SEMPLIDFAFKTTLPISIAAIIGMAIAHFF 217 (455)
T ss_pred CCCHH----------HHHH-HHHHHhcccCCCCcc-hHHHHHHH------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99874 2212 233333433455544 44444443 235666776644 44445555444444443
Q ss_pred HcCCCCCCCCChhHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHhcCCCCCchHHHH-----HHHHHHHHHhcCCChHH
Q 008538 329 IYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAA-----ILGLSILLVTGVVTWKE 403 (562)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~i~~~~i~l~i~~~~~~i~~~~va-----li~~~ll~l~g~~~~~~ 403 (562)
+.|...|+....++. + +.++.+. ..+....+.-++..+++.++....+....+.. ++.+.++-..+..++||
T Consensus 218 ~~~~~dkk~~~~~~~-~-~~~~~~~-~~p~~yallPllPLilll~f~~~~~~~~~v~~~~~~s~~i~~~~~~~r~~~~k~ 294 (455)
T PRK10654 218 WQRYLDKKENISHEM-L-DVSEITT-TAPAFYAILPFTPIIGVLIFDGKWGPQLHIITILVICMLLAAVLEFLRSFNTKK 294 (455)
T ss_pred HhHHHHhhccccccc-c-ccchhcc-ccccHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 333211111111110 1 1111111 12223333333333333334443222222222 22222222348889999
Q ss_pred HHhccCCh----------hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhH
Q 008538 404 CLAESVAW----------DTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGA 473 (562)
Q Consensus 404 ~~~~~i~w----------~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~ 473 (562)
.. +.++. +++.++.++..+++.++.+|+.|.+.+.+.+. +.. . ....+++.+..++....-.|+.
T Consensus 295 v~-~~l~~~~~GMg~~~a~Vv~liiaAgvfs~gL~~~Gl~~~l~~~l~~l-g~~-~--~~illv~~il~~l~~~~~GSg~ 369 (455)
T PRK10654 295 VF-SGLEVAYRGMADAFAGVVMLLVAAGVFAQGLSTIGFIQSLISLATSF-GSA-G--IILMLVLVILTMLAAITTGSGN 369 (455)
T ss_pred HH-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHc-CCC-h--HHHHHHHHHHHHHHHHHccchH
Confidence 86 44444 57888899999999999999999999999886 322 1 2222333333333333344899
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHH
Q 008538 474 AHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGG 553 (562)
Q Consensus 474 a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~ 553 (562)
+....+.|++.+++.+.|+||..+..++..+++++....|++ +.-....+.++++..|..|.+.+..++..++.++...
T Consensus 370 a~~~af~pi~~pia~~lG~~pv~~~~~~~~~~~~G~~~sPvs-~~ii~~ag~a~~~~~~ivKrt~ip~ii~~iv~~i~~~ 448 (455)
T PRK10654 370 APFYAFVELIPKLAHSSGINPAYLTIPMLQASNLGRTISPVS-GVVVAVAGMAKISPFEVVKRTSVPVLVGLLIVIVATE 448 (455)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCCcch-hhHhhhhcccCCCHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999866665553 3223334678899999999988878777777776666
Q ss_pred HHHHH
Q 008538 554 VWWKF 558 (562)
Q Consensus 554 ~~w~~ 558 (562)
.++++
T Consensus 449 ~~~p~ 453 (455)
T PRK10654 449 IMVPG 453 (455)
T ss_pred HHhcC
Confidence 66654
|
|
| >PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-17 Score=171.19 Aligned_cols=383 Identities=16% Similarity=0.120 Sum_probs=239.5
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCHHHHH----hhcCC---CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhH
Q 008538 140 QPLPLGAVALLGLGASVLTKTLTFSAAF----SAFGD---PIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGL 212 (562)
Q Consensus 140 ~~i~~~~~all~~~~l~~~g~~~~~~v~----~~~~~---~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~ 212 (562)
-++|+.+.-+++.....+...++++|+. +++++ ..-+.+..+.+++..+++||..|++++.+++++|++...
T Consensus 20 ~klhpF~aLl~~al~~gl~~G~~~~~i~~~i~~GfG~tl~~igivI~lG~~iG~~l~~SGaa~~IA~~l~~~~G~k~~~- 98 (441)
T PF02447_consen 20 FKLHPFLALLIVALIVGLLAGMPPEEIVKSITKGFGSTLGSIGIVIALGAMIGKLLEESGAAERIANTLLKKFGEKRAP- 98 (441)
T ss_pred HhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCccc-
Confidence 3688777777777766676678888754 33433 566777778889999999999999999999999875443
Q ss_pred HHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHH-
Q 008538 213 GYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSA- 291 (562)
Q Consensus 213 ~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~- 291 (562)
+.+.+.+++++.-+-.+.+.. ++.|+..+++++.|.+. +.+..+.++.+......+...|+++..
T Consensus 99 -~A~~i~g~iv~IPvF~dv~~v--iL~Pl~~~la~~~~~s~-----------~~~~~~l~~gl~~~h~lvPPtPgpla~a 164 (441)
T PF02447_consen 99 -LALAITGFIVGIPVFFDVGFV--ILAPLAFSLARKTGKSL-----------LYLALPLAAGLSVTHALVPPTPGPLAAA 164 (441)
T ss_pred -HHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHhCCCH-----------HHHHHHHHHHHHHhhhccCCCCcHHHHH
Confidence 334444444443222334444 79999999999998764 333343333333333344445566553
Q ss_pred HHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCC-hhHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 008538 292 TLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPD-APKLAQEKLEKMGPMSTNEKIMAGTLLLTVG 370 (562)
Q Consensus 292 g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~l~i~~~~i~ 370 (562)
+. .+.+.++.+.+|.++++...++...+..++.+++.+..++ ..|..+++..+.++. +.-...+....+.++
T Consensus 165 ~~------lg~dlG~~il~Gl~vaip~~~iag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-Ps~~~s~~~illPii 237 (441)
T PF02447_consen 165 GA------LGADLGLVILYGLIVAIPAMLIAGPLYGRFISKRIPIPPPEISESAEEEETDEKKL-PSFGLSLLPILLPII 237 (441)
T ss_pred HH------hCCChhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhhhhhhhhccccc-chHHHHHHHHHHHHH
Confidence 32 3567889999999999887766544444444443322222 111111111111111 222222322333333
Q ss_pred HHHhcCC-----------------CCCchHHHHHHHHHHHH-Hhc---CCChHHH---HhccCC--hhHHHHHHHHHHHH
Q 008538 371 LWVFGGR-----------------LNVDPVTAAILGLSILL-VTG---VVTWKEC---LAESVA--WDTLTWFAALIAMA 424 (562)
Q Consensus 371 l~i~~~~-----------------~~i~~~~vali~~~ll~-l~g---~~~~~~~---~~~~i~--w~~ll~~~~~~~l~ 424 (562)
++..+.. .| ++...-+++.++.. ..+ ..+.+|. .++.++ -.+++..+++.+++
T Consensus 238 LI~~~t~~~~~~~~~~~~~~~~~flG-~p~iALlig~l~a~~~l~~~~~~~~~~~~~~~~~al~~~g~IlLItgaGGafg 316 (441)
T PF02447_consen 238 LILLGTVADLFLPKGSPLRSILSFLG-DPNIALLIGVLIALYLLGRRRGMSREEVMKWLEKALKPAGMILLITGAGGAFG 316 (441)
T ss_pred HHHHHHHHHhccCCcchHHHHHHHhC-CcHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 3322211 11 22222233333322 222 2333432 222222 34577788999999
Q ss_pred HHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHH
Q 008538 425 GYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASAL-GCPPYFVAMVLAF 503 (562)
Q Consensus 425 ~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~-Gv~p~~~~~~~~~ 503 (562)
+.++++|+.|.+++.+.+. +.+ .+++-+++..+.++...|.+........++.|+.... |+||....++++.
T Consensus 317 ~vl~~sgi~~~i~~~~~~~--~ip-----~lll~fliaa~lr~aqGSaTVA~iTaa~I~aPl~~~~~~v~p~l~~lAiga 389 (441)
T PF02447_consen 317 QVLKDSGIGDAIANLLSGS--GIP-----PLLLAFLIAALLRTAQGSATVAMITAAGIVAPLLASLGGVSPVLLVLAIGA 389 (441)
T ss_pred HHHHhCCHHHHHHHHHHhc--CCc-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccchhHHHHHHHHhc
Confidence 9999999999999987643 221 3445566667778888899988888888999988888 9999887766654
Q ss_pred HHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008538 504 FSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVW 555 (562)
Q Consensus 504 ~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~~~ 555 (562)
++ -..++++++..+++-.+.+.+.+|-+|..-..+.+.-++...+.+.+
T Consensus 390 Gs---~~~shvNDsgFWlv~~~~g~s~k~tlkt~t~~~~i~~v~g~~~~l~l 438 (441)
T PF02447_consen 390 GS---MFFSHVNDSGFWLVKRFFGLSVKQTLKTWTVMTTIASVVGLIIVLLL 438 (441)
T ss_pred CC---ceeecCCCCceEEEeccccCCHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 44 34678889999988888899999999999888888777766655443
|
Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane |
| >TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-15 Score=165.22 Aligned_cols=350 Identities=15% Similarity=0.050 Sum_probs=238.2
Q ss_pred HHHHHHHHH-HHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCC
Q 008538 175 PWLIALAFF-FARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNT 253 (562)
Q Consensus 175 i~~~~g~~~-l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~ 253 (562)
-.-+...|+ +++.++++|..|++.+......|+.+.+....-.+.+.+.++..++..+.+ +....+.++.+++.|||+
T Consensus 167 sa~~i~lFil~G~ll~~~G~~~~li~~a~~l~G~~rGGla~vaV~as~lfg~iSGS~~A~v-a~~G~itiP~Mkk~GY~~ 245 (613)
T TIGR02123 167 SATYIFLFILFGAFLQKSGVGKFFIDLAFALAGKRRGGPAKVAVISSGLMGMISGSSVANV-VTTGSFTIPLMKRAGYKP 245 (613)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhccchHHHHH-HHHHHHHHHHHHHcCCCH
Confidence 333444444 588899999999999999999999888888888899999999999988887 468899999999999998
Q ss_pred CCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCC
Q 008538 254 GDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPT 333 (562)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~ 333 (562)
+ ...++-.+++.+|...|...+...++++. . .++|+.|.+..++.|+++.......+.+..-||+
T Consensus 246 ~----------~Aaav~AaastlG~iiPPsmg~~afi~a~---~--~~vs~~~lf~AgiiPgll~~~~l~~~v~~~a~k~ 310 (613)
T TIGR02123 246 E----------FAGAVEAAASTGGQIMPPIMGAAAFIMAE---F--LGIPYTEIIIAAIIPALLYFFGVFMQVHLEAKKQ 310 (613)
T ss_pred H----------HHHHHHHHhhhcccccCchHHHHHHHHHH---H--hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6 33344445555555544322222233332 2 3589999999999999987766665555554443
Q ss_pred CCCCCChhHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH----hcCCChHHHHh---
Q 008538 334 VKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLV----TGVVTWKECLA--- 406 (562)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~l----~g~~~~~~~~~--- 406 (562)
..+ +..+++.++..+. .++...+.+.++.+...+.......+.+.++.+.++++.. .+.+++|+..+
T Consensus 311 ~~~-~~~~~~~~~~~~~-----~~~~~~lllPvivL~~il~~g~TpteAa~~a~~~al~v~~~~~~~r~l~~~~l~~~l~ 384 (613)
T TIGR02123 311 GLK-GLSKEQLPSPKTV-----LKAGWYLLIPLVLLIVLLLVGYSPIRAAFYSIALTLIVSLLSRKDTRMGLGEIFGALE 384 (613)
T ss_pred CCC-CCCchhhHHHHHH-----HHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHhccCcCHHHHHHHHH
Confidence 221 1111111111111 1222333333333333334445555666666655555532 35677776541
Q ss_pred cc--CChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH
Q 008538 407 ES--VAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFL 484 (562)
Q Consensus 407 ~~--i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~ 484 (562)
+. ..-.+.+.++++..+++.++.+|+.+.+++.+.+..+++ ...++++..+..+....++++++...++.|++.
T Consensus 385 ~~a~~~~~I~~iia~a~i~~~~lt~tGl~~~l~~~i~~l~~~~----~~~~Lll~~l~~lilGm~l~~~a~~ii~~pi~~ 460 (613)
T TIGR02123 385 DGARNAVPVAAACAGAGIIIGVVTLTGLGLKISNDLLDLAGGN----LFLLLILTMIACIILGMGLPTTANYIITATLAA 460 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHccCCC----HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 11 123456677888889999999999999999998864322 223334444444455679999999999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHH
Q 008538 485 SVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGV 551 (562)
Q Consensus 485 ~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~ 551 (562)
|...+.|+||.++.+.+.+...+ +.+||.-......+.+..+.+..+..|..+|+.+...++...+
T Consensus 461 P~l~~lGidpi~~~~~v~~~~~i-g~iTPPvgl~lfvaa~Ia~~~~~~~~~~~~p~~~~~~~~~~l~ 526 (613)
T TIGR02123 461 PALIALGVPPIAAHMFVFYFGIL-ADITPPVALAAFAAAGIAGADPMKTGFEAFKLALAGYLVPFMF 526 (613)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHH-HcCCCCchHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888887 7888765554455556678899999999999988877765443
|
In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria. |
| >TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-16 Score=166.84 Aligned_cols=357 Identities=14% Similarity=0.102 Sum_probs=224.3
Q ss_pred HHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHH
Q 008538 185 ARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSW 264 (562)
Q Consensus 185 ~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~ 264 (562)
.+..||||+++...++..++.+++.......++ .++|... ++.... .+.|+...+.++.|.||.
T Consensus 97 vGvae~tG~i~a~i~~~v~~~p~~~~t~ivv~~---gv~s~~a-sdaG~v--vl~PL~a~if~a~Gr~Pl---------- 160 (513)
T TIGR00819 97 AGIAEKSGLIPALMRKLASHSNAKLASFMVLFI---AFFSHIA-SDAALV--ILIPLGALIFHALGRHPL---------- 160 (513)
T ss_pred HHHHHHhcHHHHHHHHHHHhCCCchhHHHHHHH---HHHHHHh-hhhhHH--HHHHHHHHHHHHcCCChH----------
Confidence 788999999999999999987655433333333 3333332 333333 699999999999999874
Q ss_pred HHHHHHHHhhhhhc-ccccccchhHHHHHHHhhhcC-------CCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCC
Q 008538 265 LMLTCFQTSVISSS-MFLTAMAANPLSATLTLNTIN-------QPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKS 336 (562)
Q Consensus 265 l~~~~~~~a~~gg~-~t~iG~~~n~i~~g~l~~~~g-------~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~ 336 (562)
.-+..++++..+|. ..+.-++.|+...|.-+++++ .+..-..|++.. .+++..++.+++.-++..|+...
T Consensus 161 aGia~~fagvs~GFsAnl~~~~~Dpll~Git~~aA~~~~~~~~v~~~~n~~F~~~--s~~vl~~v~~~vt~Kv~ePrl~~ 238 (513)
T TIGR00819 161 AGLAAAFAGVGCGFSANLFIGTIDPLLAGISQEAAAAFHPDMHVGPEANWFFMAA--STFVIAIIGGFITDKIIEPQLGP 238 (513)
T ss_pred HHHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHhcCCCcccCccccHHHHHH--HHHHHHHHHHHHHhhhcCCCCCC
Confidence 44455555554544 335557889999888777655 333344444443 33343444444555554333322
Q ss_pred CCChhHHHHHHHHhcCCCChhHHHHHHH-------HHHHHHHHHhcC--CCCC--------c---hHHHHHHHHHHHH--
Q 008538 337 SPDAPKLAQEKLEKMGPMSTNEKIMAGT-------LLLTVGLWVFGG--RLNV--------D---PVTAAILGLSILL-- 394 (562)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~e~~~l~i-------~~~~i~l~i~~~--~~~i--------~---~~~vali~~~ll~-- 394 (562)
.+++.|..+++.+|..+++++||+.+.. +++.+++.+..+ .+.. + .+.+..+....+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~t~~EkkgLr~Ag~~~l~fia~l~ll~~P~~g~LR~~~tG~l~~SPf~~~iipii~~~Fli~g 318 (513)
T TIGR00819 239 WQGDLNQDEKDIRHLNEITELERFGLIIAGVVFIAFIAAIALMIIPADGILRDPENGLVAGSPFIKGIVPFIFLFFALPG 318 (513)
T ss_pred CCcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCccCChHHHhHHHHHHHHHHHHH
Confidence 2111111101123345689999987754 555555444421 1111 1 1222222222211
Q ss_pred ----Hh-c-CCChHHHHhccCC------hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 008538 395 ----VT-G-VVTWKECLAESVA------WDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLY 462 (562)
Q Consensus 395 ----l~-g-~~~~~~~~~~~i~------w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~ 462 (562)
.. | ..+.||.. +.+. -..+++++-+-.+...++++++.+++++...+.+++.+.+.....+.+.++.
T Consensus 319 ivyG~~~g~ik~~~di~-~~m~~g~~~m~~~~vli~~A~~f~~~f~~s~i~~~ia~~~A~~L~~~~l~~~~~~i~~~l~~ 397 (513)
T TIGR00819 319 IAYGIATRSIRGEADLP-HAMAEPMKELAGFIVIIFFAAQFVAFFNWSNIGKFIAVGGADFLEESGLAGIPAFIGFALIC 397 (513)
T ss_pred HHHHhhcCccCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 11 2 25667655 3222 1223333334445678999999999999999988544443344445566666
Q ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheec----C-CCcCHHHHHHHh
Q 008538 463 FYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYG----A-NYVPLAKWWGYG 537 (562)
Q Consensus 463 ~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~----~-g~~~~~~~~k~g 537 (562)
.++..++.|.++...+++|++.|+++.+|++|+....+..++.++...++|.. |...+..+ + .+...++.+...
T Consensus 398 ~~iNlfI~S~Sgkwal~aPI~vPm~~~lGisp~~t~~AyriGDs~tNiItP~~-~y~~lil~~~~~y~k~~g~Gtl~s~m 476 (513)
T TIGR00819 398 AFICLFIASASAIWAILAPIFVPMFMLAGFAPAFAQAAFRIADSSTLIIAPMM-PFFGLFLAFLMKYKKDAGLGTLISLM 476 (513)
T ss_pred HHHHheeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhchHHHhhccCc-chHHHHHHHHHHhccCCcHHHHHHHH
Confidence 77788899999999999999999999999999999999999998866777753 22233333 2 346799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 008538 538 FIVSIVNIIIWLGVGGVWWKFIGL 561 (562)
Q Consensus 538 ~~~~li~~vv~~~~~~~~w~~~Gl 561 (562)
+|+++...+.+.+....||-++|+
T Consensus 477 lPysi~~l~~w~~l~~~w~~~~gl 500 (513)
T TIGR00819 477 LPYPAFFLIAWIALFCAWVFVLGL 500 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999988877777766464
|
The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid. |
| >cd01116 P_permease Permease P (pink-eyed dilution) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=183.77 Aligned_cols=187 Identities=23% Similarity=0.240 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHHhccC---ChhHHHHHHHHHHHhcCCC-CHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Q 008538 126 LLAIFLATIVGIIAQPL---PLGAVALLGLGASVLTKTL-TFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQF 201 (562)
Q Consensus 126 ~l~i~~~~i~lw~~~~i---~~~~~all~~~~l~~~g~~-~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l 201 (562)
.+.++..++..|.++.. +....++++..++...+.. +++|++++++|++++++.|++.++.+++++|+.|++++++
T Consensus 220 ~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~w~~l~~~~g~~~l~~~l~~tG~~~~la~~l 299 (413)
T cd01116 220 SLTILTLVIIGFVLHSPLGVSLGWIALLGALLLLLLADKLDFEDVLSRVEWDTLLFFAGLFVLVGGLEELGIIEWIAELL 299 (413)
T ss_pred HHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHcCCCCHHHHHHhCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 45556667777777654 4677888888888888886 9999999999999999999999999999999999999999
Q ss_pred HHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccc
Q 008538 202 VKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFL 281 (562)
Q Consensus 202 ~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~ 281 (562)
.+..++++......+++++.++|.+++|+++.+ ++.|+..+++++.|.++. .+++..+++++.|+..+|
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~s~f~sn~~~~~--~~~pi~~~~~~~~~~~~~---------~~~~~~~~~a~~g~~~tp 368 (413)
T cd01116 300 VGVILGRIAVAVILILWISALLSAFIDNIPVTA--TMIPIVKDLASQLGIPLL---------PLWWALALGACLGGNGTL 368 (413)
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHccHHHHH--HHHHHHHHHHHhcCCCch---------HHHHHHHHHHhccccccc
Confidence 999877777777788899999999999999876 899999999999998875 577788999999999999
Q ss_pred cccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHH
Q 008538 282 TAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPL 324 (562)
Q Consensus 282 iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~ 324 (562)
+|+++|++..++.++. |.+++|.||++++.|+.++..++...
T Consensus 369 ~gs~~n~i~~~~~~~~-g~~~~~~~~~~~g~~~~i~~~~~~~~ 410 (413)
T cd01116 369 IGASANVVAAGIAEQH-GYKISFWEFLKVGFPIMLVSLILATV 410 (413)
T ss_pred ccchHHHHHHHHHHHc-CCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999886654 67899999999999999887655544
|
Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown, it was predicted to regulate the intraorganelle pH, together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains. |
| >PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.8e-16 Score=160.46 Aligned_cols=352 Identities=13% Similarity=0.041 Sum_probs=221.0
Q ss_pred hccCChhHHHHHHHHHHHh-cCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHH
Q 008538 139 AQPLPLGAVALLGLGASVL-TKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLV 217 (562)
Q Consensus 139 ~~~i~~~~~all~~~~l~~-~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~ 217 (562)
.+.+..+..+-+++..+.+ +|.. |. +.+++++++++..+..++++++||..|++.+++.+..++++++..+ +.
T Consensus 19 ~ggig~g~~gg~g~~il~~~~~~~-p~----~~p~~vil~Ilav~~~~a~Lq~TGgld~lv~~~~k~lrk~pk~i~l-la 92 (443)
T PRK12489 19 YGGIGLGLLGGIGLVILVFVFGLP-PG----KPPVDVMLIILAVVTASATLQAAGGLDVMLQIAERLLRRNPKYITI-LA 92 (443)
T ss_pred hhhhHHHHHHHHHHHHHHHHcCCC-CC----CCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccChhHHHH-HH
Confidence 3446677777777666654 5653 32 3678899999999999999999999999999999988888888887 44
Q ss_pred HHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhh
Q 008538 218 FSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNT 297 (562)
Q Consensus 218 ~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~ 297 (562)
.....+..+++|+...+ ..+.|+..+++++.|++|. +. +....+++.+|...+|++...|.++. .+++.
T Consensus 93 p~vt~l~afl~~Tg~~v-~~~lPVi~~vA~k~gi~Ps--------rp-La~as~As~lGi~aSpin~~v~~l~~-~l~~~ 161 (443)
T PRK12489 93 PFVTYTLTFLCGTGHVV-YSILPIIYDVALKNGIRPE--------RP-MAAASVASQMGITASPVSAAVVSLVA-MLGNV 161 (443)
T ss_pred HHHHHHHHHhCCcHHHH-HHHHHHHHHHHHHcCCChh--------hh-HHHHHHHHHHHHHhcchhHHHHHHHH-HHHhc
Confidence 44455558888886322 2799999999999999987 23 44566778888878888666655543 45554
Q ss_pred cC--CCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHH----------HHh-cCCCChhHHHHHHH
Q 008538 298 IN--QPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEK----------LEK-MGPMSTNEKIMAGT 364 (562)
Q Consensus 298 ~g--~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~e~~~l~i 364 (562)
.+ .++++.|+...++|..+++.++..++.+++-|+- +++|+.++..+++ .++ ..+.++++|..+.+
T Consensus 162 ~~~~~g~~~f~il~VgIP~~~ig~l~~~l~~~~~gk~l-~~Dp~~q~r~~~~~~~~~~~~~~~~~~~~~~~~~ak~sv~i 240 (443)
T PRK12489 162 TGEGRHITLLDILAVTIPATLIGVLAAALWSLRRGKDL-DKDPEFQERLKDPEFREYVYGTTATLLDKKLPKSAKLAVWI 240 (443)
T ss_pred cCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-ccCHHHHHHhhccccccccccccccccccCCChhHHHHHHH
Confidence 34 5799999999999999999888888877765543 3333322211100 111 12567889999998
Q ss_pred HHHHHHHHH-hcC-------CCCCchH------HHHHHHHHHHHHhcCCChHHHHhcc-CChhHHHHHHHHHHHHHHHHH
Q 008538 365 LLLTVGLWV-FGG-------RLNVDPV------TAAILGLSILLVTGVVTWKECLAES-VAWDTLTWFAALIAMAGYLNK 429 (562)
Q Consensus 365 ~~~~i~l~i-~~~-------~~~i~~~------~vali~~~ll~l~g~~~~~~~~~~~-i~w~~ll~~~~~~~l~~~l~~ 429 (562)
|++.++..+ ++. |-+-+.. .+.+..+.+..+....+.+|..+.. ..-+.--.+ +.+.+++..+.
T Consensus 241 Fl~~i~~vv~~g~~~~~~~~~~~~~l~~~~~i~~~mL~~a~~i~l~~k~~~~~i~~~~vF~sGm~a~v-~I~GiAw~~~t 319 (443)
T PRK12489 241 FLAAIAVVVLLAAFSELRPSFGGKPLSMVLVIQMVMLLTGALILILTKTDPASISNGEVFKSGMIAIV-AIFGIAWMSDT 319 (443)
T ss_pred HHHHHHHHHHHHhcccccCCCCCCcCChHHHHHHHHHHHHHHHHHHcCCCHHHhccchhhHHHHHHHH-HHhhHHHHHHH
Confidence 888877766 322 1111111 1244445555566777888764221 111111111 13333332211
Q ss_pred --hCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 008538 430 --YGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNL 507 (562)
Q Consensus 430 --tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~ 507 (562)
.+..|.+.+.+.+..++. + +...+.++.+..+. -|..+++. ++.|+++.+|++|+.+.-....+.
T Consensus 320 ~~~~~~~~i~~~~~~~v~~~--p-w~~Av~mf~~s~ll----~sQAAt~~----il~Pl~~~LGi~~~~~~a~~~a~~-- 386 (443)
T PRK12489 320 FFGAHMPELKEVLGEMVKEY--P-WTYAIVLFLVSKFV----NSQAATLA----AIVPVGLALGLDPALLVASMPACY-- 386 (443)
T ss_pred HHHHHHHHHHHHHHHHHHhH--H-HHHHHHHHHHHHHH----hhHHHHHH----HHHHHHHHcCCCHHHHHHHHHHHh--
Confidence 557788888888887765 2 22223333333332 24444444 555677899999987654444333
Q ss_pred hhcccccccccchhee
Q 008538 508 MGGLTHYGIGSAPVFY 523 (562)
Q Consensus 508 ~~~~tp~~~~~n~i~~ 523 (562)
+.+..| ..|+-.-+.
T Consensus 387 ~~f~~p-~ypt~~aai 401 (443)
T PRK12489 387 GYFFLP-TYPSDLAAI 401 (443)
T ss_pred eeEEcc-CCcCceeEE
Confidence 345555 345444333
|
|
| >PRK14984 high-affinity gluconate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-16 Score=161.34 Aligned_cols=391 Identities=12% Similarity=0.065 Sum_probs=239.6
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhcCCCCHHHHHhh-------cCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 008538 131 LATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSA-------FGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVK 203 (562)
Q Consensus 131 ~~~i~lw~~~~i~~~~~all~~~~l~~~g~~~~~~v~~~-------~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~ 203 (562)
++.+++...-|+|..+..+++.....+.+.++.+|..+. +-.+..+.+..+-+++..+++||..+++++.+.+
T Consensus 11 ~~ll~li~k~Kl~pf~alli~a~~~gl~~Gm~~~~~~~~i~~G~g~~l~si~iii~lGai~G~~l~~SGaA~~IA~~ii~ 90 (438)
T PRK14984 11 ALLLLLMIRFKMNGFIALVLVALAVGLMQGMPLDKVIGSIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIA 90 (438)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 344444455678888888888888888778888876532 2335677777888899999999999999999999
Q ss_pred HhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccc
Q 008538 204 LFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTA 283 (562)
Q Consensus 204 ~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG 283 (562)
++|+++. .+.+.+.+++++.-+-.+.+.. ++.|+..+++|+.|.+.. ++. ...++...-......
T Consensus 91 ~~G~kr~--~~a~~l~~~il~ipvF~dv~fv--il~Pi~~~lak~~~~~~~---------~~~--~~l~~gl~~th~~vP 155 (438)
T PRK14984 91 KFGKKHI--QWAVVLTGFTVGFALFYEVGFV--LMLPLVFTIAASANIPLL---------YVG--VPMAAALSVTHGFLP 155 (438)
T ss_pred HhCccch--HHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHhCcChH---------HHH--HHHHHHHHHHHhCCC
Confidence 9987543 4455555555552222223332 699999999999987643 222 222222222233344
Q ss_pred cchhHHH-HHHHhhhcCCCccHHHHHHHHhHHHHHHHHH-HHHHHHHHcCCCCCCCCChhHHHHHH-HHhcCCCChhHHH
Q 008538 284 MAANPLS-ATLTLNTINQPIGWMDWAKAAIVPGLVSLIV-VPLLLYIIYPPTVKSSPDAPKLAQEK-LEKMGPMSTNEKI 360 (562)
Q Consensus 284 ~~~n~i~-~g~l~~~~g~~is~~~~~~~~~~~~li~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~ 360 (562)
..|+++. ++. .+.+.++.+.+|.++++...++ ..++..++-|++ .+.++ +..+++ .+| +++ +.-..
T Consensus 156 P~Pgpla~a~~------lgadlG~~il~Glivaip~~~i~g~~~~~~~~~~~-~~~~~--~~~~~~~~~~-~~~-Ps~~~ 224 (438)
T PRK14984 156 PHPGPTAIATI------FNADMGKTLLYGTILAIPTVILAGPVYARFLKGID-KPIPE--GLYSAKTFTE-EEM-PSFGV 224 (438)
T ss_pred CCCcHHHHHHH------hCCCHHHHHHHhHHHHHHHHHHHHHHHHHHhccCC-CCCCh--hhcccccccc-cCC-CChHH
Confidence 4456655 432 3567889999999999887544 445443333322 11111 111111 111 111 12233
Q ss_pred HHHHHHHHHHHHHhcCCCC----------------CchHHHHHHHHHHHH-Hh--cC-CChHHH---HhccCC--hhHHH
Q 008538 361 MAGTLLLTVGLWVFGGRLN----------------VDPVTAAILGLSILL-VT--GV-VTWKEC---LAESVA--WDTLT 415 (562)
Q Consensus 361 ~l~i~~~~i~l~i~~~~~~----------------i~~~~vali~~~ll~-l~--g~-~~~~~~---~~~~i~--w~~ll 415 (562)
.+...++.++++..+...+ -++...-+++.++.. .. +. .+.|+. .++... -.+++
T Consensus 225 s~~~illPi~LI~~~t~~~~~~~~~~~~~~~l~f~G~p~iALlig~l~a~~~lg~~~~~~~~~~~~~~~~al~~~g~IlL 304 (438)
T PRK14984 225 SVWTSLVPVILMAMRAIAEMILPKGHAFLPVAEFLGDPVMATLIAVLIAMFTFGLNRGRSMDQINDTLVSSIKIIAMMLL 304 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333321110 122222233333322 22 22 222332 112222 23456
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChH
Q 008538 416 WFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPY 495 (562)
Q Consensus 416 ~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~ 495 (562)
..+++.++++.++++|+.|.+++.+... +.+ .+++-+++..+.+....|.+........++.|+....|+||.
T Consensus 305 I~gaGGafg~VL~~sgi~~~i~~~l~~~--~l~-----~lllafliaallr~aqGSaTVA~itaa~I~ap~l~~~~~~p~ 377 (438)
T PRK14984 305 IIGGGGAFKQVLVDSGVDKYIASMMHET--NIS-----PLLMAWSIAAVLRIALGSATVAAITAGGIAAPLIATTGVSPE 377 (438)
T ss_pred HHcChHHHHHHHHhCCHHHHHHHHHHhC--CCC-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccCccHH
Confidence 7778899999999999999999988743 222 244556666777778888888877777777777656689998
Q ss_pred HHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008538 496 FVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWK 557 (562)
Q Consensus 496 ~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~~~w~ 557 (562)
..+++++.++ -..++.+++..+++-++.+.+.+|-+|.....+.+.-++.....+..+.
T Consensus 378 ~~~lAi~aGs---~~~shvNDsgFWlv~~~~g~~~~~tlkt~T~~~ti~~v~gl~~~~il~~ 436 (438)
T PRK14984 378 LMVIAVGSGS---VIFSHVNDPGFWLFKEYFNLTIGETIKSWSMLETIISVCGLVGCLLLNM 436 (438)
T ss_pred HHHHHHhCCC---ceeeeCCCCcchhhhhhcCCCHhhhheeehHHHHHHHHHHHHHHHHHHH
Confidence 8776655443 3567888898898888888999999999888888777776666665554
|
|
| >PRK10472 low affinity gluconate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-16 Score=161.58 Aligned_cols=383 Identities=14% Similarity=0.060 Sum_probs=238.3
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCHHHHHhh----cCC---CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhH
Q 008538 140 QPLPLGAVALLGLGASVLTKTLTFSAAFSA----FGD---PIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGL 212 (562)
Q Consensus 140 ~~i~~~~~all~~~~l~~~g~~~~~~v~~~----~~~---~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~ 212 (562)
.++|.....+++...+.+...++.++..+. +.. .....+..+.+++..+++||..+++++.+.+++|++ +.
T Consensus 24 ~kl~~fialli~Alivgl~~Gmp~~~~~~~i~~G~g~tlg~i~~iI~lGailG~lLe~SGaa~~IA~~i~~~fG~k--r~ 101 (445)
T PRK10472 24 ARMHAFVALMVVSMGAGLFSGMPLDKIAATMEKGMGGTLGFLAVVVALGAMFGKILHETGAVDQIAVKMLKSFGHS--RA 101 (445)
T ss_pred hCccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCcc--cH
Confidence 378888888878887777777787775432 331 334566667788999999999999999999999764 44
Q ss_pred HHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHH-
Q 008538 213 GYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSA- 291 (562)
Q Consensus 213 ~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~- 291 (562)
.+.+.+.+++++.-+-.+.+.. ++.|+..+++++.|.+. +.+++..++.+......+...||++++
T Consensus 102 ~~A~~l~g~iv~iPvF~dv~fv--il~Pl~~~la~~~~~s~-----------~~~~~~l~~gl~~~H~~vPP~Pgp~a~a 168 (445)
T PRK10472 102 HYAIGLAGLICALPLFFEVAIV--LLISVAFSMARHTGTNL-----------VKLVIPLFAGVAAAAAFLLPGPAPMLLA 168 (445)
T ss_pred HHHHHHHHHHHhhHHHHhhHHH--HhHHHHHHHHHHHCCCh-----------HHHHHHHHHHHHhcccccCCCcHHHHHH
Confidence 5566666666653333444444 79999999999998764 333444444444444555556677664
Q ss_pred HHHhhhcCCCccHHHHHHHHhHHHHHHHHH-HHHHHHHHcCCCCCCCCChhHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 008538 292 TLTLNTINQPIGWMDWAKAAIVPGLVSLIV-VPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVG 370 (562)
Q Consensus 292 g~l~~~~g~~is~~~~~~~~~~~~li~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~i~~~~i~ 370 (562)
+. .+.+.++.+.+|+++++...++ ..++..++-|+...+.++..++.+++ + +++ +.....+...++.++
T Consensus 169 ~~------l~adlG~~il~Glivaip~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~-Ps~~~s~~~illPi~ 238 (445)
T PRK10472 169 SQ------MNADFGWMILIGLCAAIPGMIIAGPLWGNFISRYVELHIPDDISEPHLG--E-GKM-PSFGFSLSLILLPLV 238 (445)
T ss_pred HH------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCchhhhhccc--c-cCC-CChHHHHHHHHHHHH
Confidence 32 3567889999999999987555 55555444443222222211111111 1 111 223444444444444
Q ss_pred HHHhcCCCC---------------CchHHHHH-HHHHHHH-Hh--cC-CChHHH---HhccC--ChhHHHHHHHHHHHHH
Q 008538 371 LWVFGGRLN---------------VDPVTAAI-LGLSILL-VT--GV-VTWKEC---LAESV--AWDTLTWFAALIAMAG 425 (562)
Q Consensus 371 l~i~~~~~~---------------i~~~~val-i~~~ll~-l~--g~-~~~~~~---~~~~i--~w~~ll~~~~~~~l~~ 425 (562)
++..+...+ +....+++ ++.++.. .. +. .+.|+. .++.+ .-.+++..+++.++++
T Consensus 239 LI~~~t~~~~~~~~~~~~~~~~~flG~p~iALlig~l~a~~~lg~~~~~~~~~~~~~~~~al~~~g~ilLItGaGGafg~ 318 (445)
T PRK10472 239 LVGLKTIAARFVPEGSTAYEWFEFIGHPFTAILVACLVAIYGLAMRQGMPKDKVMEICGHALQPAGIILLVIGAGGVFKQ 318 (445)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHhCChHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHhhhHhheeecChHHHHH
Confidence 443332111 01122333 3333322 22 22 222332 11221 1345667788888999
Q ss_pred HHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHc---CCChHHHHHHHH
Q 008538 426 YLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASAL---GCPPYFVAMVLA 502 (562)
Q Consensus 426 ~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~---Gv~p~~~~~~~~ 502 (562)
.++++|+.|.+++.+.+. +.+ .+++-+++..+++....|.+........++.|+.... +++|....++++
T Consensus 319 vL~~sgig~~l~~~~~~~--~~p-----~lllaflia~~lr~a~GSaTVA~iTaa~i~apll~~~~~~~~~~~l~~lAi~ 391 (445)
T PRK10472 319 VLVDSGVGPALGEALTGM--GLP-----IAITCFVLAAAVRIIQGSATVACLTAVGLVMPVIEQLNYSGAQMAALSICIA 391 (445)
T ss_pred HHHHCCHHHHHHHHHHhC--CCc-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHh
Confidence 999999999999988653 221 2455566677778788888888777777777776543 566665555444
Q ss_pred HHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008538 503 FFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWK 557 (562)
Q Consensus 503 ~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~~~w~ 557 (562)
.++ -..++.+++..+++-++.+.+.+|-+|..-+...+.-++..+..+..+.
T Consensus 392 aGs---~~~shvNDsgFW~v~~~~gl~~~~tlkt~t~~~ti~~~~~~~~~~il~~ 443 (445)
T PRK10472 392 GGS---IVVSHVNDAGFWLFGKFTGATEAQTLKTWTMMETILGTVGAIVGMIAFQ 443 (445)
T ss_pred CCC---ceeccCCCCcchhhhhhcCCCHHhhhheehHHHHHHHHHHHHHHHHHHH
Confidence 333 4567888888898888888999999999888887777666665555443
|
|
| >cd01118 ArsB_permease Anion permease ArsB | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.7e-17 Score=172.22 Aligned_cols=192 Identities=19% Similarity=0.227 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhcCCChHHHHhcc-CChhHHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 008538 361 MAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLAES-VAWDTLTWFAALIAMAGYLNKYGLITWFSQT 439 (562)
Q Consensus 361 ~l~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~l~g~~~~~~~~~~~-i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~ 439 (562)
++.+++.++++|+.+. .+++...+++++..++.+.|++++||++++. ++|++++++++++.++.+++++|+.|+++++
T Consensus 2 ~l~i~~~~i~l~~~~~-~~i~~~~~al~~~~ll~~~gv~~~~~~~~~~~~~~~~i~~~~g~~~i~~~l~~tGl~~~ia~~ 80 (416)
T cd01118 2 AIAIFVLTLVLVIWRP-FGLPEAVWAVLGAVIALILGLVSPHDALEVWGIVWDVTLTLIGVILLSLLLDEEGFFEWVAAL 80 (416)
T ss_pred HHHHHHHHHHHHHHcc-CCCChHHHHHHHHHHHHHHCCCCHHHHHHHHhcchhHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 4677888888898864 4578888999999999999999999987432 6899999999999999999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHhhhhccccccc
Q 008538 440 VVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPP---YFVAMVLAFFSNLMGGLTHYGI 516 (562)
Q Consensus 440 l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p---~~~~~~~~~~~~~~~~~tp~~~ 516 (562)
+.+..++.+ +...+.+.....+ .+.+.||++++.++.|++..+++..|.+| ....+..+++++.++.++|+++
T Consensus 81 l~~~~~~~~--~~l~~~~~~~~~~--ls~~~sn~a~~~~~~Pi~~~i~~~~g~~~~~~~~~l~~~~~~a~~g~~~tpig~ 156 (416)
T cd01118 81 AARWARGSG--RKLFTLIVLLGAA--VTAFFANDGTALILTPIVIALLRALGAKKNRTLPFLYACAFIADAASLPLPISN 156 (416)
T ss_pred HHHHhCCCh--HHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHcccccccccCC
Confidence 998776532 2222222222222 24678999999999999999999999999 7777888888888899999999
Q ss_pred ccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008538 517 GSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWK 557 (562)
Q Consensus 517 ~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~~~w~ 557 (562)
++|.+.++.+++++.||.|.++|..++..++...+.+.++|
T Consensus 157 ~~n~i~~~~~~i~~~~~~~~~~p~~li~~~~~~~~~~~~~~ 197 (416)
T cd01118 157 LVNIVTAGYFGIGFTEYAALMFLPSIVSILATYVVLYLFFR 197 (416)
T ss_pred chHHHhHhccCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999889999999999999999988887776666554
|
These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. |
| >COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7e-16 Score=148.95 Aligned_cols=357 Identities=17% Similarity=0.194 Sum_probs=238.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhH
Q 008538 163 FSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIV 242 (562)
Q Consensus 163 ~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~ 242 (562)
++..+...+|++.+-+-....++..+||+|+.|++-+.+-+.+|+-+.++.+...+++.++.+-.+-+.+.+ ..|.-+.
T Consensus 55 p~Ri~GiMsN~tLlAIPfF~fMG~vlErsglae~ll~tig~lfg~v~gglA~avi~VgallaatTGvVaAsV-vaMGlIS 133 (447)
T COG4664 55 PQRIFGIMSNDTLLAIPFFTFMGLVLERSGLAEDLLETIGQLFGPVRGGLAYAVIIVGALLAATTGVVAASV-VAMGLIS 133 (447)
T ss_pred HHHHHHHhcCCeeeeeHHHHHHHHHHHhcchHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhchHHHHH-HHhhhhc
Confidence 455667777888777766667899999999999999999999999889999999999999998877777665 3477788
Q ss_pred HHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHH
Q 008538 243 KSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVV 322 (562)
Q Consensus 243 ~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~ 322 (562)
++++.+.|||++ +..+.. ++.|.....+ ||+++..-+.++. | .|.+|.++....|++......
T Consensus 134 lpiMLryGYd~~----------lAsGvI--aAsGTLgqiI--PPSlvLIVladql-G--~SVgdly~gal~PGl~l~~~y 196 (447)
T COG4664 134 LPIMLRYGYDRK----------LASGVI--AASGTLGQII--PPSLVLIVLADQL-G--RSVGDLYAGALIPGLMLVGLY 196 (447)
T ss_pred chHHHHhCCCcc----------ccceeE--ecCceeeeec--CcceeeeeeHHhh-C--CcHHHHHHHhhhhhHHHHHHH
Confidence 888899999976 322222 2223333344 5555544333433 4 688899999999987644333
Q ss_pred H--HHHHHHcCCCCCCCCChhHHHHHHHHhcCCCChh-HHHHH------HHHH-HHHHHHHhcCCCCCchHHHHHHHHHH
Q 008538 323 P--LLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTN-EKIMA------GTLL-LTVGLWVFGGRLNVDPVTAAILGLSI 392 (562)
Q Consensus 323 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~l------~i~~-~~i~l~i~~~~~~i~~~~vali~~~l 392 (562)
. ...+-+.||+. .+..+++.+. .+...++ .|+.. .++. +.+.-..++..+..|.+.++..++++
T Consensus 197 ~~yili~a~l~P~~--aPaLP~ear~----~~~~~~~l~~~vv~~~iPplvLi~lVLGtIf~GiaTpTE~gA~G~~GA~~ 270 (447)
T COG4664 197 ALYILIMAILRPKS--APALPLEART----LGGSGRQLVKRVVQSLIPPLVLIFLVLGTIFFGIATPTEGGAVGAVGALL 270 (447)
T ss_pred HHHHHHHHHhCccc--CCCCCHHHhh----ccccHHHHHHHHHHHhcchHHHHHHHHHHHHhcccCCcccchhhHHHHHH
Confidence 3 33344455543 2333322211 1110011 11111 1111 22222334444567778888888888
Q ss_pred HHH-hcCCChHHHHhcc------CChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 008538 393 LLV-TGVVTWKECLAES------VAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYS 465 (562)
Q Consensus 393 l~l-~g~~~~~~~~~~~------i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~ 465 (562)
+.. -|.+||+... +. +.--+++++.|.-.++......|-..|+.+++.+.-++. . . +++..-+..+.
T Consensus 271 LA~~~~~l~w~~~~-~a~~~T~k~tsmV~~IllGa~~FSlvF~g~~G~~~ve~~l~~lpgg~-i--g--Fli~~~~~iF~ 344 (447)
T COG4664 271 LALANGRLNWQMVK-QALDATAKLTSMVLFILLGATVFSLVFYGLNGHAWVEHLLTNLPGGE-I--G--FLIVSNILIFF 344 (447)
T ss_pred HHHHhCcccHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHhheeecCchHHHHHHHhcCCCCc-e--e--eehHHHHHHHH
Confidence 776 6788998642 32 233446677788888888888999999999988765442 2 2 22322222233
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheec--CCCcCHHHHHHHhHHHHHH
Q 008538 466 HYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYG--ANYVPLAKWWGYGFIVSIV 543 (562)
Q Consensus 466 ~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~--~g~~~~~~~~k~g~~~~li 543 (562)
..+|.+-.-.+.+.+|+..|+++.+|+|+.++...++..-+. ++++|.-.......-| ...++..|.++-.+|...+
T Consensus 345 LgffldffEiafIivPllaPva~~lgIDliwfGVll~~NlQt-SFl~PPfgfslfYLrgVAp~~VTt~qIy~G~vPfili 423 (447)
T COG4664 345 LGFFLDFFEIAFIIVPLLAPVADKLGIDLIWFGVLLGVNLQT-SFLHPPFGFSLFYLRGVAPPSVTTGQIYRGAVPFILI 423 (447)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHhhhh-hccCCCchhhHHHhccCCCCCcchhhhhhccccHHHH
Confidence 346888889999999999999999999999999998888775 7787754333322223 3568999999999999998
Q ss_pred HHHHHHH
Q 008538 544 NIIIWLG 550 (562)
Q Consensus 544 ~~vv~~~ 550 (562)
.+++...
T Consensus 424 qvl~~~~ 430 (447)
T COG4664 424 QVLVVIL 430 (447)
T ss_pred HHHHHHH
Confidence 8877644
|
|
| >PRK09821 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-15 Score=156.56 Aligned_cols=395 Identities=11% Similarity=0.018 Sum_probs=236.3
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhcCCCCHHHHHh----h---cCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 008538 131 LATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFS----A---FGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVK 203 (562)
Q Consensus 131 ~~~i~lw~~~~i~~~~~all~~~~l~~~g~~~~~~v~~----~---~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~ 203 (562)
+..+++....++|+.+..+++.....+.+..+.+|+.+ + .-.+..+++..+.+++..+++||..|++++.+++
T Consensus 15 ~~l~~li~k~kl~pf~alii~al~~gl~~G~~~~~i~~~i~~G~g~tl~~~~lii~lGa~~G~~le~SGaa~~Ia~~ii~ 94 (454)
T PRK09821 15 ILLLLLVIKAKVQPFVALLLVSLLVALAAGIPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFTR 94 (454)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44445556677898888777777777777778777543 2 3335667777788899999999999999999999
Q ss_pred HhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhc-cccc
Q 008538 204 LFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSS-MFLT 282 (562)
Q Consensus 204 ~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~-~t~i 282 (562)
++|+++. .+.+++.+++++.-+-.+++.. ++.|+..+++|+.|.++. .+....+.+.+.... .-|.
T Consensus 95 ~~G~k~~--~~ai~i~~~ilgIpvF~dv~fv--il~Pl~~~l~kk~~~~~~---------~l~l~~~~~l~~~h~~vPP~ 161 (454)
T PRK09821 95 KLGDKRT--IAALTLAAFILGIPVFFDVGFI--ILAPIIYGFAKVAKVSPL---------KFGLPVAGIMLTVHVALPPH 161 (454)
T ss_pred HhCCCch--HHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHhCcCHH---------HHHHHHHHHHHHcccccCCC
Confidence 9987544 3455566666652222233333 699999999999988753 222222211121222 1223
Q ss_pred ccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCC---C-CCChhHH----HHHH-HHhcCC
Q 008538 283 AMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVK---S-SPDAPKL----AQEK-LEKMGP 353 (562)
Q Consensus 283 G~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~---~-~~~~~~~----~~~~-~~~~~~ 353 (562)
++|.|. +++ .+.+.+....+|.+.++...++..++..+..|+..+ + .++..++ .+++ .++.++
T Consensus 162 Pgp~~~--a~~------Lg~d~g~~~l~Giivaip~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (454)
T PRK09821 162 PGPVAA--AGL------LHADIGWLTIIGIAISIPVGIVGYFAAKIINRRQYALSVEVLEQMQLAPASEEGATKLSDKIN 233 (454)
T ss_pred hHHHHH--HHH------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccchhccccccccC
Confidence 223332 333 245677888999999988877776666555443211 1 0110100 0000 001111
Q ss_pred CChhHHHHHHHHHHHHHHHHhcCC----CC-----------CchHHHHH-HHHHHHH-Hh--c-CCChHHH---HhccC-
Q 008538 354 MSTNEKIMAGTLLLTVGLWVFGGR----LN-----------VDPVTAAI-LGLSILL-VT--G-VVTWKEC---LAESV- 409 (562)
Q Consensus 354 ~~~~e~~~l~i~~~~i~l~i~~~~----~~-----------i~~~~val-i~~~ll~-l~--g-~~~~~~~---~~~~i- 409 (562)
. +.....+...++-++++..+.. .. +....+++ +++++.. .. + ..+.++. .++.+
T Consensus 234 ~-P~~~~s~~~illPi~LI~~~t~~~~~~~~~~~~~~~l~fiG~p~iALlig~l~A~~~lg~~~~~~~~~~~~~~~~al~ 312 (454)
T PRK09821 234 P-PGAALITSLIVIPIAIIMLGTVSATLLPPSHPLLGTLQLIGSPMVALLIALVLAFWLLALRRGWSLQHTSDVMGSALP 312 (454)
T ss_pred C-CCcHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHhCCHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHH
Confidence 1 2223333333333333332221 00 11122333 3333322 22 2 2232322 11222
Q ss_pred -ChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Q 008538 410 -AWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVAS 488 (562)
Q Consensus 410 -~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~ 488 (562)
.-.+++..+++.++++.++++|+.|.+++.+... +.+ .+++-+++..+++....|.+........++.|+..
T Consensus 313 ~~g~IlLItgaGGafg~VL~~sgig~~i~~~~~~~--~l~-----~lll~flIAa~lr~aqGSaTVA~iTaa~i~ap~~~ 385 (454)
T PRK09821 313 TAAVVILVTGAGGVFGKVLVESGVGKALANMLQMI--HLP-----LIPAAFIISLALRASQGSATVAILTTSGLLSEAVM 385 (454)
T ss_pred hhhHhheeecChHHHHHHHHHCCHHHHHHHHHHhC--CCc-----HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHhc
Confidence 1345667778899999999999999999987753 221 34556667777888888888877777777777754
Q ss_pred H-cCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008538 489 A-LGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWK 557 (562)
Q Consensus 489 ~-~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~~~w~ 557 (562)
. .+++|....++++.++ -..++++++..+++-.+.+.+.+|-+|..-..+.+.-++.....+..+.
T Consensus 386 ~~~~~~~~l~~lAi~aGs---~~~ShvNDsgFWlv~~~~g~~~~~tlkt~T~~~ti~~~~gl~~~~il~~ 452 (454)
T PRK09821 386 GLNPIQCVLVTLAACFGG---LGLSHVNDSGFWIVTKYLGLSVADGLKTWTVLTTILGLTGFLITWCVWA 452 (454)
T ss_pred cCCCccHHHHHHHHhcCc---ceeeecCCCcceehhhhcCCCHhhhheeeeHHHHHHHHHHHHHHHHHHH
Confidence 2 3677776665554433 4567899999999888888999999998888777777776666665554
|
|
| >PLN00136 silicon transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-16 Score=167.91 Aligned_cols=181 Identities=14% Similarity=0.099 Sum_probs=151.7
Q ss_pred HHHhcCC--CCCchHHHHHHHHHHHHHhcCCChHHHHhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 008538 371 LWVFGGR--LNVDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLG 448 (562)
Q Consensus 371 l~i~~~~--~~i~~~~vali~~~ll~l~g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~ 448 (562)
.++.+++ .+++...++++++.++.+.|+.+.+|++ +.++|++++++.|++.++.+++++|+.|++++.+.+..++
T Consensus 22 ~~~~~~~p~l~i~~~~~Allga~llll~g~~~~~~a~-~~i~~~tl~ll~gmmii~~~L~~tG~~~~ia~~l~~~~~~-- 98 (482)
T PLN00136 22 LAVFPSVPFLPIGRTAGALLSAVLMIVFHVISPDDAY-ASIDLPILGLLFATMVVGSYLKNAGMFKHLGRLLAWRSQG-- 98 (482)
T ss_pred HHHhccCCCCCccHHHHHHHHHHHHHHhCCCCHHHHH-HhCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCC--
Confidence 3444443 4567777899999998889999999998 7899999999999999999999999999999999876433
Q ss_pred chhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCc
Q 008538 449 LSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYV 528 (562)
Q Consensus 449 ~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~ 528 (562)
. .. .+..+..+.. ..+.|.+|++++.++.|++..+++..|.+|..+.++++++++.+++.||+|+|+|.++.+.+++
T Consensus 99 ~-~~-ll~~l~~~ta-~lSafl~N~~t~llm~Piv~~la~~~~~~p~~~ll~la~aAn~Gg~~TpiG~p~Nlii~~~~~i 175 (482)
T PLN00136 99 G-RD-LLCRVCVVTA-LASALFTNDTCCVVLTEFVLELAAERNLPAKPFLLALASSANIGSSATPIGNPQNLVIAFNSKI 175 (482)
T ss_pred h-HH-HHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhhhhhccccchheeeCCCCC
Confidence 2 12 2222322222 3356889999999999999999999999999999999999999999999999999999988889
Q ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008538 529 PLAKWWGYGFIVSIVNIIIWLGVGGVWWK 557 (562)
Q Consensus 529 ~~~~~~k~g~~~~li~~vv~~~~~~~~w~ 557 (562)
++.||++.+.|..++.+++.....+.+||
T Consensus 176 ~F~dF~~~~~P~~li~l~v~~~~l~~~~r 204 (482)
T PLN00136 176 TFPKFLLGILPAMLAGMAVNMVMLLCMYW 204 (482)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988887776665554
|
|
| >PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.2e-18 Score=180.78 Aligned_cols=196 Identities=24% Similarity=0.278 Sum_probs=160.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcc---CChhHHHHHHHHHHHhcCCCCHHHHH-hhcCCCHHHHHHHHHHHHHHHHHhCH
Q 008538 118 GVSKNAWQLLAIFLATIVGIIAQP---LPLGAVALLGLGASVLTKTLTFSAAF-SAFGDPIPWLIALAFFFARGFIKTGL 193 (562)
Q Consensus 118 ~lt~~~~~~l~i~~~~i~lw~~~~---i~~~~~all~~~~l~~~g~~~~~~v~-~~~~~~~i~~~~g~~~l~~~l~~tGl 193 (562)
++|++|+..+.+++.++++|++++ +|.+.+++++..++.+.|++++||.. ++.+|++++++.+.+.++.+++++|+
T Consensus 263 ~~s~~Ek~~~~i~~~~i~lw~~~~~~~i~~~~va~~~~~ll~~~~il~~~d~~~~~i~W~~l~~~~g~~~lg~~l~~sG~ 342 (471)
T PF00939_consen 263 PMSKKEKKVLVIFLLTILLWITESFHGIDPAIVALLGAVLLFLPGILTWKDAAQKKIPWGTLFLFGGALSLGTALEKSGA 342 (471)
T ss_pred CCchhHhhhhhhhhhhhhcccCcccCCCCHHHHHHHHHHHHHHHHhccHHHHHhcCCCchhHHHHHHHHHHHHHHHhcCH
Confidence 347889999999999999999987 47888999999999999999999854 78999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCchhHHHHHHHHh-hhhhcccCchhhhhhhhhhHhHHHHHHHc-CCCCCCCcchhhhHHHHHHHH
Q 008538 194 GNRIAYQFVKLFG-SSSLGLGYSLVFSE-ALLAPAIPSVSARAGGIFLPIVKSLCLAC-GSNTGDGTEHKLGSWLMLTCF 270 (562)
Q Consensus 194 ~~~la~~l~~~~g-~~~~~~~~~l~~~~-~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~-g~~~~~~~~~~~~~~l~~~~~ 270 (562)
.+|+++.+....+ .++......+..+. .+...+.+|+++.+ ++.|++.+++.+. |.||. ...+...
T Consensus 343 ~~~la~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~s~~a~~~--il~Pi~~~~a~~~~g~~p~---------~~~l~~~ 411 (471)
T PF00939_consen 343 AKWLANVLLPLLGGLSPFLVVLVILLVTVLLLTNFMSNTATVA--ILIPIVISLAAALGGINPL---------ALALIVA 411 (471)
T ss_pred HHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHhcCcHHHHH--HHHHHHHHHhhhccCCChH---------HHHHHHH
Confidence 9999999999887 45555444444444 44456666666554 7999999999999 98875 4555666
Q ss_pred HHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHc
Q 008538 271 QTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIY 330 (562)
Q Consensus 271 ~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~ 330 (562)
++++..+..+|+++|+|.+..+. .+++..|++|.|++.+++..++...+.+.++
T Consensus 412 ~~~~~~~~~lP~~sp~~~i~~~~------g~~~~~d~~k~G~~~~ii~~iv~~~~~~~~w 465 (471)
T PF00939_consen 412 FASSFAGFLLPYSSPPNAIAYGT------GYYKFKDFIKYGFPLTIIAIIVIILVAYPYW 465 (471)
T ss_pred HHhhhccccCCcCCcceeEEEcC------CCCCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 66766668999999999998752 3588999999999999988877666554443
|
One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane |
| >PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-14 Score=150.69 Aligned_cols=362 Identities=17% Similarity=0.170 Sum_probs=222.2
Q ss_pred CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCC
Q 008538 173 PIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSN 252 (562)
Q Consensus 173 ~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~ 252 (562)
+.+-.++..++-.+..||||+++...++.+++.+++.......++ .+.|... ++.... ++.|+...+.++.|.|
T Consensus 89 ~pLG~vlv~mlgvgvae~sG~i~a~i~~~v~~~p~~~it~ivvf~---gv~s~~a-sdaGyV--vl~PL~a~if~a~Gr~ 162 (508)
T PRK11339 89 APLGAILALVLGAGLAERVGLLPALMVKMASHVNARYASYMVLFI---AFFSHIS-SDAALV--IMPPMGALIFLAVGRH 162 (508)
T ss_pred CcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCchhHHHHHHH---HHHHHHh-hhhhHH--HHHHHHHHHHHHcCCC
Confidence 455555556666788999999999999999987655433333333 3333332 333333 6999999999999998
Q ss_pred CCCCcchhhhHHHHHHHHHHhhhhhc-ccccccchhHHHHHHHhhhcC-------CCccHHHHHHHHhHHHHHHHHHHHH
Q 008538 253 TGDGTEHKLGSWLMLTCFQTSVISSS-MFLTAMAANPLSATLTLNTIN-------QPIGWMDWAKAAIVPGLVSLIVVPL 324 (562)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~a~~gg~-~t~iG~~~n~i~~g~l~~~~g-------~~is~~~~~~~~~~~~li~~~~~~~ 324 (562)
|. .-++.++++..+|. ..+.-++.-+...|.-+++++ .+..-..|++.. -+++..++.++
T Consensus 163 Pl----------aGia~~fagvs~GfsAnl~~~~~Dpll~Git~~aA~~~~~~~~v~~~~N~~F~~~--s~~vl~~v~~~ 230 (508)
T PRK11339 163 PV----------AGLLAAIAGVGCGFTANLLIVTTDVLLSGISTEAAAAFNPQMHVSVIDNWYFMAS--SVVVLTIVGGL 230 (508)
T ss_pred hH----------HHHHHHHHHHHhhhhhhhccccchhhHHHHHHHHHHhcCCCcccCccccHHHHHH--HHHHHHHHHHH
Confidence 74 43445554444443 334444455777777666544 233334444433 33444445555
Q ss_pred HHHHHcCCCCCCCCChhHHHHHHHHhcCCCChhHHHH-------HHHHHHHHHHHHhcCC--C-----C--C-chHHHH-
Q 008538 325 LLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIM-------AGTLLLTVGLWVFGGR--L-----N--V-DPVTAA- 386 (562)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-------l~i~~~~i~l~i~~~~--~-----~--i-~~~~va- 386 (562)
+..++..|+..+.+++ +.++..+++++||+. +.++++.++..+..+. . | + ++..-+
T Consensus 231 vt~k~vePrlg~~~~~------~~~~~~~lt~~ekkgLr~Ag~~~l~~~~~i~~l~lP~~g~Lr~~~tG~l~~Sp~~~si 304 (508)
T PRK11339 231 ITDKIIEPRLGQWQGN------SDEKLQTLTESQRFGLRIAGVVSLLFIAAIALMVIPENGILRDPINHTVMPSPFIKGI 304 (508)
T ss_pred HhhheeCCCCCccccc------cccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCCccCChHHHhH
Confidence 5555555544221111 112334578999988 5666666666653221 1 1 1 121111
Q ss_pred --HHHHHHHH---Hhc-----CCChHHHHhccCChh------HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCch
Q 008538 387 --ILGLSILL---VTG-----VVTWKECLAESVAWD------TLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLS 450 (562)
Q Consensus 387 --li~~~ll~---l~g-----~~~~~~~~~~~i~w~------~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~ 450 (562)
.+....+. +.| +.+.+|+. +.+.-+ .+.++.+.--+....+.++..+.++....+.+++.+.+
T Consensus 305 v~~i~~~Fli~GivyG~~~g~iks~~Dv~-~~m~~g~~~m~~~ivl~F~~Aqfia~F~~snlG~ilav~gA~~L~~~~l~ 383 (508)
T PRK11339 305 VPLIILFFFVVSLAYGIATRTIRRQADLP-HLMIEPMKEMAGFIVMVFPLAQFVAMFNWSNMGKFIAVGLTDILESSGLS 383 (508)
T ss_pred HHHHHHHHHHHHHHHhhhcccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 11111111 112 35666654 222211 11111122223355678999999999998886665543
Q ss_pred hHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheec-----C
Q 008538 451 WQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYG-----A 525 (562)
Q Consensus 451 ~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~-----~ 525 (562)
....++.+.++..++..++.|.++-.+++.|++.|+.+.+|++|....++..++.++.+.++|.+ +...++.+ .
T Consensus 384 ~~pl~i~~ill~a~iNlfI~SgSakwai~aPIfVPm~~llGisPe~tq~AyRiGDs~TNiItPl~-~y~~lil~~~~~y~ 462 (508)
T PRK11339 384 GIPAFVGLALLSSFLCMFIASGSAIWSILAPIFVPMFMLLGFHPAFAQILFRIADSSVLPLAPVS-PFVPLFLGFLQRYK 462 (508)
T ss_pred chHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHccchhhhcCCch-HHHHHHHHHHHHhc
Confidence 33344556666677788899999999999999999999999999999999999998877777764 33323333 2
Q ss_pred CCcCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008538 526 NYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGL 561 (562)
Q Consensus 526 g~~~~~~~~k~g~~~~li~~vv~~~~~~~~w~~~Gl 561 (562)
.+..+++++|+.+|+++...+.+.+.... |-.+|+
T Consensus 463 k~~g~Gtlis~mlPysi~~lv~w~~ll~~-w~~~gl 497 (508)
T PRK11339 463 PDAKLGTYYSLVLPYPLIFLVVWLLMLLA-WYLVGL 497 (508)
T ss_pred cCCCHhHHHHHHHHHHHHHHHHHHHHHHH-HHHhCC
Confidence 46899999999999999999887666555 455554
|
|
| >PRK15445 arsenical pump membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-16 Score=168.06 Aligned_cols=192 Identities=20% Similarity=0.217 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhcCCChHHHHh-ccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 008538 361 MAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLA-ESVAWDTLTWFAALIAMAGYLNKYGLITWFSQT 439 (562)
Q Consensus 361 ~l~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~l~g~~~~~~~~~-~~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~ 439 (562)
+++++++++.+|+.+. .++|..+++++++.++.+.|+.+++|+++ .+++|+++++++|++.++.+++++|+.|+++++
T Consensus 3 ~l~i~~~~~~~~~~~~-~~ip~~~~all~~~ll~~~gv~~~~~a~~~~~~~~~~i~l~~g~~vi~~~l~~tGl~~~ia~~ 81 (427)
T PRK15445 3 AIAIFLLTLVLVIWQP-KGLGIGWSALLGAVLALLTGVVSLGDVPVVWGIVWNATLTFIAIIIISLLLDEAGFFEWAALH 81 (427)
T ss_pred HHHHHHHHHHHHhccc-CCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 5677888888888775 36888899999999999999999999874 369999999999999999999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHhhhhccccccc
Q 008538 440 VVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPP---YFVAMVLAFFSNLMGGLTHYGI 516 (562)
Q Consensus 440 l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p---~~~~~~~~~~~~~~~~~tp~~~ 516 (562)
+.+..++.+ +.. +..+..+..+ .+.+.||++++.++.|++..+++..|.|| ....+..+++++.++..+|+++
T Consensus 82 ~~~~~~~~~--~~l-~~~~~~~~~~-ls~~~sn~~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~~~a~~~~~~~~ig~ 157 (427)
T PRK15445 82 VARWAKGNG--RKL-FVYIVLLGAA-VAALFANDGAALILTPIVLAMLLALGFSKKATLAFVMAAGFIADTASLPLVVSN 157 (427)
T ss_pred HHHHhCCCH--HHH-HHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHcCCCcccchHHHHHHHHHhcccccccccCC
Confidence 998876532 222 2222223222 23577999999999999999999999999 5666777778887778889999
Q ss_pred ccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008538 517 GSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWK 557 (562)
Q Consensus 517 ~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~~~w~ 557 (562)
++|.+..+..++++.||.|.+.|..++..++.....+.+||
T Consensus 158 ~~N~i~~~~~~i~f~d~~~~~~p~~ii~~~~~~~~~~~~~r 198 (427)
T PRK15445 158 LVNIVSADYFGIGFAEYASVMVPVNLVSLAASLLVLWLYFR 198 (427)
T ss_pred chHhhhhccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999888778999999999999999998887777777664
|
|
| >PRK10034 fructuronate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-14 Score=151.14 Aligned_cols=384 Identities=10% Similarity=0.042 Sum_probs=227.8
Q ss_pred HhccCChhHHHHHHHHHHHhcCCCCHHHHHh-------hcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCch
Q 008538 138 IAQPLPLGAVALLGLGASVLTKTLTFSAAFS-------AFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSL 210 (562)
Q Consensus 138 ~~~~i~~~~~all~~~~l~~~g~~~~~~v~~-------~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~ 210 (562)
...++|.....+++.....+...++.+|..+ ++-.+..+.+..+.+++..+++||..+++++.+.+++|+++.
T Consensus 21 ~k~k~~~fialli~al~~gl~~Gm~~~~~~~~i~~G~g~~~~si~lii~lGailG~lLe~SGaa~~Ia~~i~~~~G~kr~ 100 (447)
T PRK10034 21 LKFKINSMVALLVAALSVGMLAGMDLMKLLHTMKAGFGNTLGELAIIVVFGAVIGKLMVDSGAAHQIAHTLLARLGLRYV 100 (447)
T ss_pred HHhCccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCccch
Confidence 3347888888887877777777777777432 234467777778888999999999999999999999977544
Q ss_pred hHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHH
Q 008538 211 GLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLS 290 (562)
Q Consensus 211 ~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~ 290 (562)
.+.+++.+.+++--+-.+.+.. ++.|+..+++++.+.++. .. +.+.++........+...|+++.
T Consensus 101 --~~a~~l~g~llGi~vF~dv~~v--~laPi~~~lak~~~~s~~---------~~--~~~l~~gl~~~h~lvPP~Pgpla 165 (447)
T PRK10034 101 --QLSVIIIGLIFGLAMFYEVAFI--MLAPLVIVIAAEAKIPFL---------KL--AIPAVAAATTAHSLFPPQPGPVA 165 (447)
T ss_pred --HHHHHHHHHHHhhHHHHHhHHH--hhHHHHHHHHHHhCcCHH---------HH--HHHHHHHHHHhhcccCCCCcHHH
Confidence 3344444444432111222332 699999999999887653 22 22222222333334444556655
Q ss_pred H-HHHhhhcCCCccHHHHHHHHhHHHHHHHHH-HHHHHHHHcCCCCCCCCChhHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 008538 291 A-TLTLNTINQPIGWMDWAKAAIVPGLVSLIV-VPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLT 368 (562)
Q Consensus 291 ~-g~l~~~~g~~is~~~~~~~~~~~~li~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~i~~~~ 368 (562)
. +. .+.+.++.+.+|.+.++...++ .+++..++-| +..+.++..+ .+++.++ ++. +.-...+...++.
T Consensus 166 ~a~~------l~a~lG~~il~Gl~v~ip~~~~~g~~~~~~~~~-~~~~~~~~~~-~~~~~~~-~~l-Ps~~~s~~~illP 235 (447)
T PRK10034 166 LVNA------YGADMGMVYIYGVLVTIPSVICAGLILPKFLGN-LERPTPSFLK-ADQPVDM-NNL-PSFGTSILVPLIP 235 (447)
T ss_pred HHHH------hCCcHHHHHHHhhHHHHHHHHHHHHHHHHHhcc-cCCCCcchhh-hcccccc-CCC-CCcHHHHHHHHHH
Confidence 3 32 3567789999998888876443 4444433333 2211111111 1111111 111 2223333333333
Q ss_pred HHHHHhcCCC---------------CCchHHHHH-HHHHHHH-H--hcC-CChHHH---HhccC--ChhHHHHHHHHHHH
Q 008538 369 VGLWVFGGRL---------------NVDPVTAAI-LGLSILL-V--TGV-VTWKEC---LAESV--AWDTLTWFAALIAM 423 (562)
Q Consensus 369 i~l~i~~~~~---------------~i~~~~val-i~~~ll~-l--~g~-~~~~~~---~~~~i--~w~~ll~~~~~~~l 423 (562)
++++..+... -+....+++ ++.++.. . .+. .+.++. .++.. .-.+++..+++.++
T Consensus 236 i~Li~~~t~~~~~~~~~~~~~~~~~fiG~p~iALlig~l~a~~~lg~~~~~~~~~~~~~~~~~l~~~g~IlLitgaGGaf 315 (447)
T PRK10034 236 AIIMISTTIANIWLVKGTPAWEVVNFIGSSPIAMFIAMVVAFVLFGTARGHDMQWVMNAFESAVKSIAMVILIIGAGGVL 315 (447)
T ss_pred HHHHHHHHHHHhccCCcchHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhhhHhhheecChHHH
Confidence 3333222100 011112333 3333322 2 222 222222 11222 13456677788899
Q ss_pred HHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH-----HHHHH-cCCChHHH
Q 008538 424 AGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFL-----SVASA-LGCPPYFV 497 (562)
Q Consensus 424 ~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~-----~~a~~-~Gv~p~~~ 497 (562)
++.++++|+.|.+++.+... +.+ .+++-+++..+.+....|.+........++. |+... .++||...
T Consensus 316 g~vl~~sgi~~~i~~~~~~~--~l~-----~lll~fliaa~lr~aqGSaTVA~itaa~i~a~~~~~p~~~~~~~~~~~~~ 388 (447)
T PRK10034 316 KQTIIDTGIGDTIGMLMSHG--NIS-----PYIMAWLITVLIRLATGQGVVSAMTAAGIISAAILDPATGQLVGVNPALL 388 (447)
T ss_pred HHHHHhCCHHHHHHHHHHhC--CCC-----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccccccccCCcccHHHH
Confidence 99999999999999988753 222 2455566667777788888887777777777 65433 37888777
Q ss_pred HHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 008538 498 AMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWW 556 (562)
Q Consensus 498 ~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~~~w 556 (562)
+++++.++ -..++++++..+++-++.+.+.+|-+|.....+.+..++.+...+..+
T Consensus 389 vlAi~aGs---~~~shvNDs~FW~v~~~~g~~v~~~lk~~T~~~~i~~v~gl~~~~~l~ 444 (447)
T PRK10034 389 VLATAAGS---NTLTHINDASFWLFKGYFDLSVKDTLKTWGLLELVNSVVGLIIVLIIS 444 (447)
T ss_pred HHHHhCCC---ceeeeCCCCcchhhhhhcCCCHhhhheeeeHHhHHHHHHHHHHHHHHH
Confidence 66654443 456788899999987788899999999987777766666555555444
|
|
| >TIGR00791 gntP gluconate transporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-14 Score=150.65 Aligned_cols=390 Identities=12% Similarity=0.082 Sum_probs=213.3
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhcCCCCHHHHH----hhcC---CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 008538 132 ATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAF----SAFG---DPIPWLIALAFFFARGFIKTGLGNRIAYQFVKL 204 (562)
Q Consensus 132 ~~i~lw~~~~i~~~~~all~~~~l~~~g~~~~~~v~----~~~~---~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~ 204 (562)
+.+++....++|.....+++.....+....+..|.. +++. ++..+.+..+.+++..++++|..+++++.+.++
T Consensus 12 ~~~~~~~~~k~~~~ial~~~a~~~~l~~g~~~~~~~~~i~~g~g~~~~~iglii~lg~~~g~~m~~sGaa~~ia~~i~~~ 91 (440)
T TIGR00791 12 LLLLLIMKFKLNTFVALLVVSFGVGLASGMPLDKVVHSIEAGIGGTLGFLALIVGLGAMLGKLLADSGAAQRIALTLLAK 91 (440)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 333444555688888777777776666666766643 3333 778888889999999999999999999999999
Q ss_pred hCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhccccccc
Q 008538 205 FGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAM 284 (562)
Q Consensus 205 ~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~ 284 (562)
+|+++. .+.++..+++++.........+ ++.|+..+++++.|.++. .+....+.+........|...
T Consensus 92 ~g~~r~--~~a~~~~~~ilgi~~f~~~~~v--il~Pi~~~l~~~~g~s~~---------~~a~~~~~~~~~~~~~vPp~P 158 (440)
T TIGR00791 92 FGKSRV--QWAVVIAGLIVGLALFFEVGFV--LLIPLVFSIAAEAKISLL---------KLGIPMVAALSVAHGFLPPHP 158 (440)
T ss_pred hcccch--HHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHhCCChH---------HHHHHHHHHHHHhceeCCCCc
Confidence 976533 4444444445543322222232 699999999999998864 222222222222222333333
Q ss_pred chhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHH-HHHHHHHHHHHcCCCCCCCCChhHHHHHHHHhcC-CCChhHHHHH
Q 008538 285 AANPLSATLTLNTINQPIGWMDWAKAAIVPGLVS-LIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMG-PMSTNEKIMA 362 (562)
Q Consensus 285 ~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~l 362 (562)
+++ .+++. .+.+.++++.++++.++.. ++..+++..+..|++.++ ++.++..+++.+|.+ |...+.....
T Consensus 159 g~~-~~a~~------~g~~~~~~~~~gl~~~i~~~i~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~ 230 (440)
T TIGR00791 159 GPT-AIANE------YGADIGEVLLYGLIVAIPTVIIAGPLFTKFLGRIVPPS-PEASLGSQKTFSEEEMPSFGISLFTA 230 (440)
T ss_pred cHH-HHHHH------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-CchhhhccccccccCCCCchhhHHHH
Confidence 333 23322 2467889999999988875 444554444333332221 111110001111111 1111111111
Q ss_pred HHHHHHHHHH-H----hcCCCCC--------chHHHHHHHHHHHHH----hcCCChHHHHh---ccCC-hh-HHHHHHHH
Q 008538 363 GTLLLTVGLW-V----FGGRLNV--------DPVTAAILGLSILLV----TGVVTWKECLA---ESVA-WD-TLTWFAAL 420 (562)
Q Consensus 363 ~i~~~~i~l~-i----~~~~~~i--------~~~~vali~~~ll~l----~g~~~~~~~~~---~~i~-w~-~ll~~~~~ 420 (562)
.+.++.++.. + .....+. ++...-+++.++... .+..+.+|..+ +... .. +++.++++
T Consensus 231 llPillii~~~~~~~~~~~~~~~~~~~~~~g~~~~Alli~~~~a~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~li~~~g 310 (440)
T TIGR00791 231 LLPVILMAVKTIAELTLPKGSTAYEVVEFIGNPSTAMFIALLVAIYTLGIRRGMPMDQVMDSCGSAIGSIAMILLIIGGG 310 (440)
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHcCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 1 1100000 222222333332221 23344454321 2222 22 34445568
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhH----HHHHHHHHHHHHHHHHcCCChHH
Q 008538 421 IAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGA----AHIGAMFTAFLSVASALGCPPYF 496 (562)
Q Consensus 421 ~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~----a~~~il~Pi~~~~a~~~Gv~p~~ 496 (562)
..+++.++++|..|.+++.+.+. +.++ +++.+++..+......|.+ +...++.|++. +..|+||..
T Consensus 311 g~f~~vl~~~G~~~~l~~~~~~~--~~~~-----~~l~fli~~~i~~atGS~tva~~~~~~I~~Pil~---~~~g~~~~~ 380 (440)
T TIGR00791 311 GAFKQVLIDSGVGDYIAELMSGM--NISP-----ILMAWLIAAILRIALGSATVAALTAAGLVAPLLG---QYSGVNPAL 380 (440)
T ss_pred HHHHHHHHhcCHHHHHHHHHhcC--CCCH-----HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHhh---ccCCcCHHH
Confidence 88999999999999999988754 2221 2223333344444455544 44456667643 246899987
Q ss_pred HHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008538 497 VAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVW 555 (562)
Q Consensus 497 ~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~~~ 555 (562)
..+++ +++. ..+.+.+++...+.-++.+.+.+|-+|.....+.+.-++..++.+..
T Consensus 381 ~~lai--~aG~-~~~sH~nd~~fwl~~~~~g~~~~~~~k~~~~~~~i~~~~~~~~~~~~ 436 (440)
T TIGR00791 381 LVLAT--GAGS-VIASHVNDAGFWLFKEYFGLTVKETLKTWTLLETIISVVGLIGVLLL 436 (440)
T ss_pred HHHHH--hcCC-cccccCCCChhhhhhhhcCCCHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 65443 4432 24445566666776678889999999998888887777665555443
|
This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. |
| >COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.6e-14 Score=145.27 Aligned_cols=387 Identities=14% Similarity=0.084 Sum_probs=227.9
Q ss_pred HHHhccCChhHHHHHHHHHHHhcCCCCHHHHH----hhcC---CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCC
Q 008538 136 GIIAQPLPLGAVALLGLGASVLTKTLTFSAAF----SAFG---DPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSS 208 (562)
Q Consensus 136 lw~~~~i~~~~~all~~~~l~~~g~~~~~~v~----~~~~---~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~ 208 (562)
+.+-.++|.....+++.....+.+.++.+++. +++. ......+..+-+++..+|+||..+++++.+.|++|++
T Consensus 17 l~i~~kv~~flal~l~al~~gl~~Gm~~~~i~~~i~~G~ggtlg~i~~Vi~lGam~GkLle~sGaA~~IA~tii~~~G~k 96 (442)
T COG2610 17 LIIKFKVHPFLALLLVALLVGLLGGMPLLKVVGTIMKGFGGTLGSLALVIGLGAMLGKLLEDSGAAESIADTLIRKFGEK 96 (442)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhCcc
Confidence 33556788888777777777676667776654 2333 3456666677888999999999999999999999874
Q ss_pred chhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhH
Q 008538 209 SLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANP 288 (562)
Q Consensus 209 ~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~ 288 (562)
. ..+.+.+.++++++-+.-..+.. +++|+..+++|+.|.++. .+....+.+.....+..|. .|++
T Consensus 97 r--~~~Al~l~g~i~~~~vF~dv~~v--~l~Pia~alak~~~is~~---------~i~v~la~g~~~~h~~vpP--~Pgp 161 (442)
T COG2610 97 R--ALLALVLAGLILGIPVFFDVGFV--LLIPLAFALAKEAGISLL---------KIAVPLAAGLSVTHMFVPP--HPGP 161 (442)
T ss_pred h--HHHHHHHHHHHHhhhHHhhhHHH--HHHHHHHHHHHHcCCCHH---------HHHHHHHHHHHHhcccCCC--CCch
Confidence 4 56777777777776655555554 799999999999998864 2322333222222223233 3344
Q ss_pred HHHHHHhhhcCCCccHHHHHHHHhHHHHH-HHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHhcCCCChhHHHHHHHHHH
Q 008538 289 LSATLTLNTINQPIGWMDWAKAAIVPGLV-SLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLL 367 (562)
Q Consensus 289 i~~g~l~~~~g~~is~~~~~~~~~~~~li-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~i~~~ 367 (562)
+... + ..+.+.+.-..++...++. .++...++. ++.+|+.+..+..++.. ++.++.. .+.....+....+
T Consensus 162 ia~a--~---~~~a~~g~~il~g~ivaip~~~iag~~~~-~~~~r~~~~~~~~~~~~-~~~~~~~--~ps~g~sl~~~~v 232 (442)
T COG2610 162 IAAA--G---PFGADIGTVILYGLIVAIPTVIIAGPLFA-KLLGRKIKALPAGEGSL-KELDEKE--LPSFGVSLATILV 232 (442)
T ss_pred hhhh--h---hcCcchhHHHHHHHHHHHHHHHHHHHHHH-HHHhCcCCCCchhhccc-ccccccc--CCccchhhHHHHH
Confidence 4432 1 1234455666788888877 555555655 44444333222211111 1111110 1121122222222
Q ss_pred HHHHHHhcC----CC----C-------CchHHHHHHHH----HHHHHhcCC-ChHHH---HhccCC--hhHHHHHHHHHH
Q 008538 368 TVGLWVFGG----RL----N-------VDPVTAAILGL----SILLVTGVV-TWKEC---LAESVA--WDTLTWFAALIA 422 (562)
Q Consensus 368 ~i~l~i~~~----~~----~-------i~~~~vali~~----~ll~l~g~~-~~~~~---~~~~i~--w~~ll~~~~~~~ 422 (562)
.+++++... .. . +...+++++.. +..+..++- +.++. .++.+. -..++..++...
T Consensus 233 pi~lm~l~ti~~~~~~~~~~~~~~~~flg~~~~al~i~ll~ai~~l~~~~~~~~~~~~~~~~~~i~~~~~ilLitgagga 312 (442)
T COG2610 233 PILLMALKTIASLLLPKGSPALEVLEFLGNPVIALLIALLVAIYTLGMGRGRSKNTLMESLESALKPIAMILLITGAGGA 312 (442)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHhcChHHHHHHHHHHHHHHHHhcccccHHHHHHHHHhhHHHHHHHHHHHhhhHh
Confidence 222222111 10 0 11112222222 222222222 22222 222332 234667788999
Q ss_pred HHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH-HHHHcCC-ChHHHHHH
Q 008538 423 MAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLS-VASALGC-PPYFVAMV 500 (562)
Q Consensus 423 l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~-~a~~~Gv-~p~~~~~~ 500 (562)
+++.+.++|..|.+++.+.+. +.+ .++.-+++....+..-.|.+........++.+ +-++.+- +|..+ ..
T Consensus 313 fg~Vl~~sg~g~~la~~l~~~----~~~---pil~~~iia~~lr~a~GSaTva~~tA~~i~a~~~l~~~~~~~~~~l-~~ 384 (442)
T COG2610 313 FGQVLADSGVGDYLASLLSGT----GLS---PLLLAFIVAALLRIATGSATVAMITAAGIVAPPLLAQLGAVNPEAL-HV 384 (442)
T ss_pred hhhHHHhcchhHHHHHHHHhC----CCC---hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhcCCccHHHH-HH
Confidence 999999999999999988754 111 23455556666677788888888888888887 6666664 45332 22
Q ss_pred HHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008538 501 LAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVW 555 (562)
Q Consensus 501 ~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~~~ 555 (562)
++.+++ +...++++++..+.+-++.+.+.+|-+|.....+.+..++...+.+.+
T Consensus 385 lA~~aG-s~~~sh~nDs~Fw~~~~~~glt~ket~k~wt~~~ti~~~vgl~~v~~~ 438 (442)
T COG2610 385 LATAAG-SVIFSHVNDSGFWLVKGYFGLTVKETLKTWTVLTTIISVVGLVGVLLL 438 (442)
T ss_pred HHHhcc-CceEeeecCCeEEEeeeecCCCHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333443 246678888888888888889999999988888887777764444443
|
|
| >COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.2e-17 Score=173.37 Aligned_cols=196 Identities=19% Similarity=0.236 Sum_probs=165.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhccCC----hhHHHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCH
Q 008538 118 GVSKNAWQLLAIFLATIVGIIAQPLP----LGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGL 193 (562)
Q Consensus 118 ~lt~~~~~~l~i~~~~i~lw~~~~i~----~~~~all~~~~l~~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl 193 (562)
+.+.+++...+++.+....|.+++.. ...+++++..++.+.|+.+++|++++++|++++++.|++.++.+++|+|.
T Consensus 257 ~~~~~~~l~~~i~~l~~~~w~~~~~~~~~~~~~~ali~~~~~~~~~vl~~~~~~~~i~W~~lilf~g~i~l~~~l~~tG~ 336 (461)
T COG0471 257 PLLRDEKLLLGIFLLLLLLWIFGKLLGKIDATLIALIPVALLLLAGVLTWKEVYKKIDWGTLILFGGLIALGSALSKTGA 336 (461)
T ss_pred CcchhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHhHHHHHHhCCchHHHHHHHHHHHHHHHHhcCH
Confidence 34677888899999999999888743 46889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCC-chhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHH
Q 008538 194 GNRIAYQFVKLFGSS-SLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQT 272 (562)
Q Consensus 194 ~~~la~~l~~~~g~~-~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~ 272 (562)
.+++++.+....++. +..+...+++.+..++.|.+|++.++ .+.|+...++++.|.+|. ......+.
T Consensus 337 ~~~i~~~l~~~~~~~~~~~il~~~~~~~~~~~~f~SntA~~~--~m~Pi~~~ia~~l~~~p~----------~~~~~v~~ 404 (461)
T COG0471 337 IAWIAGLLAGSLGGLGPFAILLLLLLLTLVLTLFASNTATAI--AMVPIAIALASALGGAPL----------LLLMLVAV 404 (461)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHhcCCCch----------HHHHHHHH
Confidence 999999999988654 55666677778888888888877765 799999999999988764 33344455
Q ss_pred hhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Q 008538 273 SVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYP 331 (562)
Q Consensus 273 a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~ 331 (562)
++.+++++|+|+++|.++.|- .++++.||++.|+|.++++.++...+.+.+++
T Consensus 405 ~as~~~~tpv~~~~n~iv~g~------G~~k~~d~~~~G~~l~~v~~iv~i~~~~~~~~ 457 (461)
T COG0471 405 SASGGFLTPVGSPPNPIALGS------GYVKFKDWWKVGFILSIVLIIVLLVIGLLWWP 457 (461)
T ss_pred HHhhhhhcCCCCCCCceEECC------CCccHHHHHHhccHHHHHHHHHHHHHHHHHHh
Confidence 667888999999999998752 46889999999999999988887777666554
|
|
| >TIGR00785 dass anion transporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.2e-16 Score=166.98 Aligned_cols=198 Identities=18% Similarity=0.258 Sum_probs=164.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHH-HHHHHHhcCCC---hHHHHhccCChhHHHHHHHHHHHHHHHH
Q 008538 353 PMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILG-LSILLVTGVVT---WKECLAESVAWDTLTWFAALIAMAGYLN 428 (562)
Q Consensus 353 ~~~~~e~~~l~i~~~~i~l~i~~~~~~i~~~~vali~-~~ll~l~g~~~---~~~~~~~~i~w~~ll~~~~~~~l~~~l~ 428 (562)
.+++++++.+.+++.++.+|+++. ++...+++++ ..++.+.|..+ +||++ ++.+|++++++.+++.++.+++
T Consensus 5 ~l~~~~~~~l~i~~~~i~~w~~~~---~~~~~~a~~~~~~~l~l~g~~~~~~~~~~~-~~~~~~~v~l~~~~~~i~~al~ 80 (444)
T TIGR00785 5 GLNSGAWLLLAIFVAAIVGWILEP---LPLPVTALLAIPIIAVLLGVLSAFKFKNAL-SGFADPTIWLFFGAFILATALV 80 (444)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHHHhccCCcchHHHHH-HhcCCcHHHHHHHHHHHHHHHH
Confidence 467899999999999999999986 6788888885 77777889999 99987 6799999999999999999999
Q ss_pred HhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHHHHcCCCh--------HHHHH
Q 008538 429 KYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAA-HIGAMFTAFLSVASALGCPP--------YFVAM 499 (562)
Q Consensus 429 ~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a-~~~il~Pi~~~~a~~~Gv~p--------~~~~~ 499 (562)
++|+.+++++.+.+..++.+. ...+....+ .....+.+.||++ ++.++.|++..+++..|.+| ....+
T Consensus 81 ~tGl~~~ia~~i~~~~~~~~~--~~~~~~~~~-~~~l~~~~~sn~ar~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~l~~ 157 (444)
T TIGR00785 81 KTGLGKRIAYKLVGKMGGTTL--GLGYFLVFL-ETLLAPMWPSNTARAGGILLPIIKSLLPLLGSKPEKSPRKIGKYLML 157 (444)
T ss_pred HcCchHHHHHHHHHHHCCCCh--HHHHHHHHH-HHHHHhhCchHhHhHHHHHHHHHHHHHHHhCCCCCcccchHHHHHHH
Confidence 999999999999998776432 222222222 2234567999999 88999999999999999998 45566
Q ss_pred HHHHHHhhhhcccccccccchheecCCC------cCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008538 500 VLAFFSNLMGGLTHYGIGSAPVFYGANY------VPLAKWWGYGFIVSIVNIIIWLGVGGVWWK 557 (562)
Q Consensus 500 ~~~~~~~~~~~~tp~~~~~n~i~~~~g~------~~~~~~~k~g~~~~li~~vv~~~~~~~~w~ 557 (562)
++.++++.+++.+|+++++|.++.+..+ +++.||++.+.|..++..++.....+.++|
T Consensus 158 ~~~~~a~~g~~~t~~g~~~n~i~~~~~~~~~g~~i~~~~~~~~~~p~~ii~~~~~~~~~~~~~~ 221 (444)
T TIGR00785 158 GIAYSASIGSSGFLTGSAPNALAAGILSKILGIQISWGDWFLAGLPLGIILLLLVPLLLYVLFP 221 (444)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhcCCCcCHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Confidence 7778888788999999999999887532 899999999999999888887776666654
|
Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+. |
| >TIGR00935 2a45 arsenical pump membrane protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.7e-16 Score=164.17 Aligned_cols=187 Identities=14% Similarity=0.134 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHhcc---CChhHHHHHHHHH----HHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHH
Q 008538 126 LLAIFLATIVGIIAQP---LPLGAVALLGLGA----SVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIA 198 (562)
Q Consensus 126 ~l~i~~~~i~lw~~~~---i~~~~~all~~~~----l~~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la 198 (562)
.+.++++++.+|.++. ++....+..+... ....|..++||+.++++|++++++.|++.++++++++|+.++++
T Consensus 227 ~~~v~~~~i~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~i~w~~l~~~~g~f~l~~~l~~tG~~~~la 306 (429)
T TIGR00935 227 CWIVLVFLLVGFFVLEFLGIPVSAIAWIAALGAIALAILADAIDTEKVLRGAPWQIVLFSAGMYLVVEGLKNLGLTEYLG 306 (429)
T ss_pred HHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHhcCCCCHHHHHHhCCcHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 3445555556665543 2323223322211 22367899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHH--cCCCCCCCcchhhhHHHHHHHHHHhhhh
Q 008538 199 YQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLA--CGSNTGDGTEHKLGSWLMLTCFQTSVIS 276 (562)
Q Consensus 199 ~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~--~g~~~~~~~~~~~~~~l~~~~~~~a~~g 276 (562)
+.+....+.++......+...+.++|.+++|++ ++.|+..+++.+ .|.+|. .+++...++++.|
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~ls~~~sN~~-----~~~pi~~~i~~~~~~g~~~~---------~~~~~l~~~~~~g 372 (429)
T TIGR00935 307 GILNVLEDRGLWAAILGTGFVSAFLSSIMNNMP-----TMLVGALSIDQSSATGLPKE---------PMVYANVIGADLG 372 (429)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHccHH-----HHHHHHHHHhhccccccchh---------HHHHHHHHHHhcC
Confidence 955433345666667778888999999998877 268998888764 356654 4667788999999
Q ss_pred hcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHH
Q 008538 277 SSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLY 327 (562)
Q Consensus 277 g~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~ 327 (562)
|..+|+|+++|++..+..++. |+++++.||+|+|.|.+++.+++...+.+
T Consensus 373 g~~tp~gs~anli~~~~~~~~-g~~~~~~df~k~g~~~~~~~~~i~~~~l~ 422 (429)
T TIGR00935 373 PKITPIGSLATLLWLHVLEQK-GYKISWGYYFRTGIPMTIPVLFVTLAYLL 422 (429)
T ss_pred cccCccccHHHHHHHHHHHHC-CccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877665 77899999999999999888777665554
|
|
| >cd01115 SLC13_permease Permease SLC13 (solute carrier 13) | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.5e-16 Score=161.51 Aligned_cols=184 Identities=20% Similarity=0.270 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHh-----ccCChhHHHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Q 008538 128 AIFLATIVGIIA-----QPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFV 202 (562)
Q Consensus 128 ~i~~~~i~lw~~-----~~i~~~~~all~~~~l~~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~ 202 (562)
.+++..+++|.+ +..|....++++..++.+.|..++||+.++++|++++++.+++.++..++++|+.||+++.+.
T Consensus 192 ~~~~~~i~l~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~w~~l~~~~~~~~l~~~l~~~Gl~~~ia~~l~ 271 (382)
T cd01115 192 AVLIITIVLLAALAAITGLLPVSVAIAIGAIVLVFGGVLLTKEDYKSIDWGIIFLFAGGIPLGKALESSGAAALIAEALI 271 (382)
T ss_pred HHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHccCCHHHHHHcCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 445555555553 457888888888888888999999999999999999999999999999999999999999999
Q ss_pred HHhCC-CchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccc
Q 008538 203 KLFGS-SSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFL 281 (562)
Q Consensus 203 ~~~g~-~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~ 281 (562)
++.++ ++......+++.+.+++.+++|++... ++.|++.+++++.|.||. .+.+...++++. +..+|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~ls~~~sn~~~~~--i~~Pi~~~~~~~~g~~p~---------~~~~~~~~~~~~-~~~tp 339 (382)
T cd01115 272 SLLGGLPPFAILLLLCLLTLVLTNFISNTATAV--LLAPIALSIALSLGLPPE---------ALLLAVAIGASC-AFMLP 339 (382)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHcCCChH---------HHHHHHHHHHHH-HHcCc
Confidence 87655 677888889999999999998877765 899999999999999985 566677777776 68999
Q ss_pred cccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008538 282 TAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYII 329 (562)
Q Consensus 282 iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~ 329 (562)
+|+++|.+..+. .++++.||+|.+.|+.++.+++...+.+.+
T Consensus 340 ~~~~~n~i~~~~------~~i~~~~~~~~~~p~~i~~~~~~~~~~~~~ 381 (382)
T cd01115 340 VGTPPNAIVLGP------GGYKFSDFAKVGLPLSILSLVVSVTMIPLI 381 (382)
T ss_pred cCCCCCeeeeCC------CCccHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 999999988753 368999999999999999888887777655
|
The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices. |
| >PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-13 Score=142.36 Aligned_cols=352 Identities=12% Similarity=0.049 Sum_probs=225.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhC--CCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHc
Q 008538 172 DPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFG--SSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLAC 249 (562)
Q Consensus 172 ~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g--~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~ 249 (562)
.+....++....++..+++.|..+.+.+...|-.+ ++|..++....+++.+++.+++|.+... .++....+++..+.
T Consensus 74 ~glGl~Im~~~GFa~YM~hIGA~~~lV~~~~kPL~~ik~pYlll~~~~llg~llsl~IpSAaGLa-~lLmatl~PvLi~~ 152 (455)
T PRK09804 74 AGLGLSIMAVGGYARYMERIGASRAMVSLLSRPLKLIRSPYIILSATYVIGQIMAQFITSASGLG-MLLMVTLFPTLVSL 152 (455)
T ss_pred ccHHHHHHHHHhHHHHHHhhCccHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhccccHHhHH-HHHHHHHHHHHHHc
Confidence 67778888888889999999999999998887664 4677888889999999999999998876 35666667778899
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHhhhhhc-ccccccchhHHHHHHHhhhcCCCccHHHHH-HHHhHHHHHHHHHHHHHHH
Q 008538 250 GSNTGDGTEHKLGSWLMLTCFQTSVISSS-MFLTAMAANPLSATLTLNTINQPIGWMDWA-KAAIVPGLVSLIVVPLLLY 327 (562)
Q Consensus 250 g~~~~~~~~~~~~~~l~~~~~~~a~~gg~-~t~iG~~~n~i~~g~l~~~~g~~is~~~~~-~~~~~~~li~~~~~~~~~~ 327 (562)
|.+|. . +.+..+..+.. .+|. ++-|..++.. .| ++..||+ .+-.|.++...++....-+
T Consensus 153 Gvs~~----------~--AaaVia~t~~i~~gP~-s~~~v~aA~~----~g--~~v~~y~~~~q~p~~i~~i~~iai~h~ 213 (455)
T PRK09804 153 GVSRL----------S--AVAVIATTMSIEWGIL-ETNSIFAAQV----AG--MKIATYFFHYQLPVASCVIISVAISHF 213 (455)
T ss_pred CCCHH----------H--HHHHHHhhhcccCCCC-CchHHHHHHH----cC--CChhheeeeccHHHHHHHHHHHHHHHH
Confidence 98864 1 22222211111 2222 2334444432 23 5666777 5777777654444433322
Q ss_pred H----HcCCCCCCCCChhHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHH--hcC-----CCCCchHHHHHHHHHHHHH-
Q 008538 328 I----IYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWV--FGG-----RLNVDPVTAAILGLSILLV- 395 (562)
Q Consensus 328 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~i~~~~i~l~i--~~~-----~~~i~~~~vali~~~ll~l- 395 (562)
+ +-|||.+. ++.++ +.+|.+. +.....++.-++-.++... +.. ...++...+.+++..+..+
T Consensus 214 fwqr~~Dkk~~~~-~~~~~----~~~~~~~-~~p~~YAlLP~lPliLil~~~f~~~~~~~~i~l~v~~am~is~~ia~l~ 287 (455)
T PRK09804 214 FVQRAFDKKDKNI-NHEQA----EQKALDN-VPPLYYAILPVMPLILMLGSLFLAHVGLMQSELHLVVVMLLSLTVTMFV 287 (455)
T ss_pred HHHHHHHhhcccc-ccccc----ccccccc-cCchHHHHHHHHHHHHHHHHHhhcccccCceeecHHHHHHHHHHHHHHH
Confidence 2 23333211 11111 1111111 1111222221111111122 111 1345665566666655554
Q ss_pred --hcCCChHHHHhccCC----------hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 008538 396 --TGVVTWKECLAESVA----------WDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYF 463 (562)
Q Consensus 396 --~g~~~~~~~~~~~i~----------w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~ 463 (562)
.+..|.|+.. +... -+++-++.++-.++..++..|..|.+.+...+.- .+. ....+++..+.+
T Consensus 288 e~ir~r~~k~~~-~~~~~ff~GMG~~f~~VV~LIVAA~vFa~GL~aiG~Id~Li~~~~~~g--~g~--~~~~lv~~~i~~ 362 (455)
T PRK09804 288 EFFRKHNLRETM-DDVQAFFDGMGTQFANVVTLVVAGEIFAKGLTTIGTVDAVIRGAEHSG--LGG--IGVMIIMALVIA 362 (455)
T ss_pred HHHHhccchhHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhHHHHHHHHHHhCC--Cch--HHHHHHHHHHHH
Confidence 4555555543 2221 2466777888889999999999999999887642 111 222233344444
Q ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHH
Q 008538 464 YSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIV 543 (562)
Q Consensus 464 l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li 543 (562)
+....-.|+.+....+.|.+-++|.+.|+||..+.++++.+++++..++|++ +.-..+-|..+++.-|..|...+.+++
T Consensus 363 l~a~l~GSGnAaffAF~~lvp~iA~~~G~~~~~l~lpmq~as~lgRt~SPVa-gviIavAg~a~vSP~eiVKRTavPml~ 441 (455)
T PRK09804 363 ICAIVMGSGNAPFMSFASLIPNIAAGLHVPAVVMIMPMHFATTLARAVSPIT-AVVVVTSGIAGVSPFAVVKRTAIPMAV 441 (455)
T ss_pred HHHhhhcCchHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHhhccccCchh-hHHhhhccccCCCHHHHHHHhHHHHHH
Confidence 4455678899999999999999999999999999999999999999999985 333445677899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 008538 544 NIIIWLGVGGVW 555 (562)
Q Consensus 544 ~~vv~~~~~~~~ 555 (562)
..++..+..+.+
T Consensus 442 g~i~~~i~~~~~ 453 (455)
T PRK09804 442 GFVVNMIATITL 453 (455)
T ss_pred HHHHHHHHHHHH
Confidence 988877665543
|
|
| >PRK09921 permease DsdX; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-13 Score=139.87 Aligned_cols=389 Identities=12% Similarity=0.028 Sum_probs=212.9
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhcCCCCHHHHH----hhcCC---CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Q 008538 133 TIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAF----SAFGD---PIPWLIALAFFFARGFIKTGLGNRIAYQFVKLF 205 (562)
Q Consensus 133 ~i~lw~~~~i~~~~~all~~~~l~~~g~~~~~~v~----~~~~~---~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~ 205 (562)
.+++....++|+...-+++...+.+....+++|.. +++.. .....+..+.+++..+++||..+++++.+.+.
T Consensus 18 l~~li~k~k~~~f~aLl~~ai~~gl~~g~~~~~~~~~i~~g~g~t~g~i~~ii~lGai~G~lle~SGaa~~ia~~i~~~- 96 (445)
T PRK09921 18 IVLTIVKFKFHPFLALLLASFFVGAMMGMGPLEMVNAIESGIGGTLGFLAAVIGLGTILGKMMEVSGAAERIGLTLQRC- 96 (445)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHH-
Confidence 33333455678777766677776666667777643 34432 34456667778899999999999999997544
Q ss_pred CC-CchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccc-cc
Q 008538 206 GS-SSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFL-TA 283 (562)
Q Consensus 206 g~-~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~-iG 283 (562)
++ +.........+++. .+.|++.. . .++.|+..+++++.|.++. + . ....+.+.+..... .+
T Consensus 97 ~~~~~~~a~~~~gll~~-IpvF~~~~--~--vil~Pl~~~lak~~~~s~~-----~----~--~~~~~~~~~~~h~~vPp 160 (445)
T PRK09921 97 RWLSADVIMVLVGLICG-ITLFVEVG--V--VLLIPLAFSIAKKTNTSLL-----K----L--AIPLCTALMAVHCVVPP 160 (445)
T ss_pred hhhhHHHHHHHHHHHHc-ccHHHHhH--H--HHHHHHHHHHHHHhCCCHH-----H----H--HHHHHHHHHHhHhcCCC
Confidence 33 22222322222222 33343322 2 2689999999999887643 1 1 11112222222222 33
Q ss_pred cchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHH-HHHHHHHHcCCCCCC-CCChhHHHHHHHHhcCCCChhHHHH
Q 008538 284 MAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIV-VPLLLYIIYPPTVKS-SPDAPKLAQEKLEKMGPMSTNEKIM 361 (562)
Q Consensus 284 ~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~ 361 (562)
+|.-..++++ .+.+.++...+|++.+++..++ ..++..+..|+..++ .++..++.+ + ++.+++ +.....
T Consensus 161 ~Pg~~~~a~~------lg~~lg~~~l~Gl~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l-P~~~~s 231 (445)
T PRK09921 161 HPAALFVANK------LGADIGSVIVYGLLVGLMASLVGGPLFLKFLGNRLPFKPVPTEFADLE-V-RDEKTL-PSLGAT 231 (445)
T ss_pred CcHHHHHHHH------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCchhhhhc-c-ccccCC-CCcHHH
Confidence 3332233333 2467778999999999776444 444444443332111 111111111 1 111111 222333
Q ss_pred HHHHHHHHHHHHhcC----CCC-----------CchHHHHHHHHHHH-H-Hh--cCCChHHHHhccCC------hhHHHH
Q 008538 362 AGTLLLTVGLWVFGG----RLN-----------VDPVTAAILGLSIL-L-VT--GVVTWKECLAESVA------WDTLTW 416 (562)
Q Consensus 362 l~i~~~~i~l~i~~~----~~~-----------i~~~~vali~~~ll-~-l~--g~~~~~~~~~~~i~------w~~ll~ 416 (562)
+...++.+++..... ... +....+++....++ . .. +....++.+++..+ -.+++.
T Consensus 232 ~~~illPi~LI~~~~~~~~~~~~~~~~~~~l~f~g~p~iALlig~l~a~~~l~~~~~~~~~~~~~~~~~al~~~~~illi 311 (445)
T PRK09921 232 LFTVLLPIGLMLVKTVAELNMAKEGTLYTLLEFIGNPITAMFIAVFVAYYILGIRQHMGMGTLLTHTENGFGSIANILLI 311 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhccCccchHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 322222222222111 000 11112344333332 2 22 22221222222222 245566
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH-cCCChH
Q 008538 417 FAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASA-LGCPPY 495 (562)
Q Consensus 417 ~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~-~Gv~p~ 495 (562)
.+++.++++.++++|+.|.+++.+.+. +.+ .++..+++..+.+....|.+........++.|+... .|+||.
T Consensus 312 ~GaGGafg~Vl~~sg~~~~i~~~l~~~--~~~-----pl~~~~liaa~l~~a~GSaTva~~taa~i~~p~l~~~~g~~p~ 384 (445)
T PRK09921 312 IGAGGAFNAILKSSGLADTLAVILSNM--HMH-----PILLAWLVALILHAAVGSATVAMMGATAIVAPMLPLYPDISPE 384 (445)
T ss_pred HhccHhHHHHHHhCCHHHHHHHHHHhC--CCC-----HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhccCCCCHH
Confidence 666789999999999999999998764 221 233555566666777788887776444444444432 389998
Q ss_pred HHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008538 496 FVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWK 557 (562)
Q Consensus 496 ~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~~~w~ 557 (562)
..++++ +++. -..++.+++...+..+..+.|.+|-+|...+.+.+.-++..++.+..+.
T Consensus 385 ~lvlai--~aGs-l~~shvNDs~fW~~~~~~glt~k~t~k~~t~~~~i~~~~~~~~~~~~~~ 443 (445)
T PRK09921 385 IIAIAI--GSGA-IGCTIVTDSLFWLVKQYCGATLNETFKYYTTATFIASVVALAGTFLLSF 443 (445)
T ss_pred HHHHHH--hcCC-cccccCCCCccHHHHHHhCCCHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 875444 4432 3567888888888888888999999999888888777776665555443
|
|
| >TIGR00529 AF0261 converved hypothetical integral membrane protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-12 Score=134.58 Aligned_cols=363 Identities=13% Similarity=0.051 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCHHHHH-----hhcCCCHHHHHHHHHHHHHHHHHh-CHHHHHHHHH
Q 008538 128 AIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAF-----SAFGDPIPWLIALAFFFARGFIKT-GLGNRIAYQF 201 (562)
Q Consensus 128 ~i~~~~i~lw~~~~i~~~~~all~~~~l~~~g~~~~~~v~-----~~~~~~~i~~~~g~~~l~~~l~~t-Gl~~~la~~l 201 (562)
.+|...+++....++|.....+.+...+.+....+++|.. .+..++.+.++++...+.+.++++ |..+++++.+
T Consensus 7 ~~~~~ii~li~~~K~~~~~all~~al~lgl~~G~~~~~i~~~i~~~g~~~~~i~lii~lg~l~g~l~~ssG~~~~ia~~l 86 (387)
T TIGR00529 7 SLFTVIVVLIVFKKVNIGLLIFVGVMILALLVRLGLEGFLWTLSLADSFWSLIVTIFIIAFLSGMMEKSFGDLSKFSEGM 86 (387)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344445544444889888887777776666667888865 345567777777776677799999 9999999999
Q ss_pred HHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccc
Q 008538 202 VKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFL 281 (562)
Q Consensus 202 ~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~ 281 (562)
.+.+|++.......+ .+. + +..... .++.|+..+++++.+.++. ........+-... -..
T Consensus 87 ~~l~g~~~~~~ap~l--iG~-l----Pv~~g~--vilaPlv~~la~~~~~s~~---------~~~~~~~~~~~v~--h~~ 146 (387)
T TIGR00529 87 RTIFSKNSDSFVPAL--IGL-M----PMPGGA--LFSAPMVKNSLKEERINPE---------KLTVKNYWFRHTW--EFF 146 (387)
T ss_pred HHHhCcccHHHHHHH--HHH-h----hHHHHH--HHHHHHHHHHHHHhCcCHH---------HHHHHHHHHHHHH--Hhh
Confidence 999976543333222 222 2 222222 2589999999999988764 1211222222222 223
Q ss_pred cccchhHHHH-HHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHhcCCCChhHHH
Q 008538 282 TAMAANPLSA-TLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKI 360 (562)
Q Consensus 282 iG~~~n~i~~-g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 360 (562)
....|+++++ +. .+.+.++...+++|.+++..+.++++.. |+.. ++.+ ++.++. +.-+.-..
T Consensus 147 ~Pp~Pgpi~aa~~------l~~~lg~~il~gl~i~i~~~i~G~~~~~---~~~~---~~~~----~~~~~~-~~~~~l~P 209 (387)
T TIGR00529 147 WPIYPAVVLVSAL------SGIHPGKVSLTLFPVFAIAFFLGWFFFN---GKQL---PCLS----KPRNLF-DSFFNLYP 209 (387)
T ss_pred cCCCchHHHHHHH------hCCCHHHHHHHHHHHHHHHHHHHHHHHc---Cccc---cccc----cccccC-cccHHHHH
Confidence 3334566554 32 3478889999999999988766554332 2211 1110 000111 11011111
Q ss_pred HHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-HHHHhcCCCh---HHHHhccCChhHHHHHHHHHHHHHHHHHhCHHHHH
Q 008538 361 MAGTLLLTVGLWVFGGRLNVDPVTAAILGLS-ILLVTGVVTW---KECLAESVAWDTLTWFAALIAMAGYLNKYGLITWF 436 (562)
Q Consensus 361 ~l~i~~~~i~l~i~~~~~~i~~~~vali~~~-ll~l~g~~~~---~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~~~l 436 (562)
.+.+...++ ... .+.. .+++... .+...+..+. ++.+++.+++.+++..+++..+++.++++|+.|.+
T Consensus 210 I~lil~~s~----~~~---~~~~-~al~a~~l~~~~~~~~~~~~~~~~~~~al~~~illii~agg~fk~vL~~sGi~~~l 281 (387)
T TIGR00529 210 IIIVLGTSV----LIL---LDKL-SGWFALLLSTSIYNVFRRRYLLETLKRVFNKWIFLLLFAVMIYKVVIEHSGVGESI 281 (387)
T ss_pred HHHHHHHHH----HHh---cChH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 111111111 111 1221 1222221 1122222222 34455677888888999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhccccccc
Q 008538 437 SQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGI 516 (562)
Q Consensus 437 a~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~ 516 (562)
++.+.+. +.+ .+++.+++.++....-....+.+.+..|++.+. ..|.++...+++.+.++ -+.+|.+.
T Consensus 282 ~~~~~~~--~ip-----~~~l~~lia~ilg~~tGa~it~agi~~Pll~~~--~~~~~~~~l~la~g~g~---~~~Shvnd 349 (387)
T TIGR00529 282 AAEFVSW--NLP-----PWILLILLPLVSGISTGITQAYVGISLPLLMEF--FSSAKYAVLTYMFGYGG---VILSPVHL 349 (387)
T ss_pred HHHHHhC--CCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCchhHHHHHHHHHhhh---hccCcccc
Confidence 9988753 221 123333333333322334445566677765321 13677766655555443 45678888
Q ss_pred ccchheecCCCcCHHHHHHHhHHHHHHHHHHH
Q 008538 517 GSAPVFYGANYVPLAKWWGYGFIVSIVNIIIW 548 (562)
Q Consensus 517 ~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~ 548 (562)
. .++.-++.+.+.+|.+|...+...+..+..
T Consensus 350 ~-fwl~~eyf~~~~~~~~k~~~~~~~~~~~~~ 380 (387)
T TIGR00529 350 C-VVLSAEYFGVEVFKIYRKVLLPLVLTLILG 380 (387)
T ss_pred c-hhHhHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 8 788878888999999999887777666543
|
This protein is predicted to have 10 transmembrane regions. Members of this family are found so far in the Archaea (Archaeoglobus fulgidus and Pyrococcus horikoshii) and in a bacterial thermophile, Thermotoga maritima. In Pyrococcus, the gene is located between nadA and nadB, two components of an enzyme involved in de novo synthesis of NAD. By PSI-BLAST, this family shows similarity (but not necessarily homology) to gluconate permease and other transport proteins. |
| >cd01117 YbiR_permease Putative anion permease YbiR | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-14 Score=151.45 Aligned_cols=172 Identities=16% Similarity=0.216 Sum_probs=144.5
Q ss_pred CchHHHHHHHHHHHHHhcCCChHHHHhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 008538 380 VDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILI 459 (562)
Q Consensus 380 i~~~~vali~~~ll~l~g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~ 459 (562)
.+...+++++..++.+.|+.++||++ +.++|+++++++|++.++.+++++|+.|++++++.+..++ . ...+..+.
T Consensus 11 ~~~~~~a~~~~~ll~~~g~~~~~~~~-~~~~~~~i~~~~g~~~l~~~l~~tGl~~~ia~~l~~~~~~--~--~~l~~~~~ 85 (384)
T cd01117 11 LDRWAIALLGAALMLLFGVISLEDAP-AAIDLDTIILLFGLMVVSAALELSGFFDALGSRILVKAGS--P--RRLLFLLV 85 (384)
T ss_pred CCHHHHHHHHHHHHHHhCCCCHHHHH-HHcCHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhcCC--H--HHHHHHHH
Confidence 56788899999998889999999987 6799999999999999999999999999999998876332 1 22222333
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHH
Q 008538 460 LLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFI 539 (562)
Q Consensus 460 ~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~ 539 (562)
....+ .+.+.+|++++.++.|++.++++..|.+|....+...++++.++..+|+++++|.+.++.+++++.||.+.++|
T Consensus 86 ~~~~~-ls~~~~n~~~~~~~~Pi~~~l~~~~~~~~~~~~~~~~~aa~~g~~~tp~g~~~n~i~~~~~~i~~~~~~~~~~p 164 (384)
T cd01117 86 LLSGI-LSALLTNDTACLVFTPIVLELARVAGLPPIPLLLALATAANIGSAATPIGNPQNLLIASESGISFPFFLAAMAP 164 (384)
T ss_pred HHHHH-HHHHHhhHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHcccccccCCCchhhhhhcCCCCCHHHHHHHHhH
Confidence 33332 23566899999999999999999999999999999999999988999999999999988889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008538 540 VSIVNIIIWLGVGGVWWK 557 (562)
Q Consensus 540 ~~li~~vv~~~~~~~~w~ 557 (562)
..++..++.....+.++|
T Consensus 165 ~~i~~~~~~~~~~~~~~~ 182 (384)
T cd01117 165 LALLGLLLLLILLLVLFP 182 (384)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999988877666655554
|
Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate sodium, sulfate, arsenite and organic anions. A typical ArsB/NhaD permease is composed of 8-13 transmembrane domains. |
| >PRK09547 nhaB sodium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=151.62 Aligned_cols=174 Identities=15% Similarity=0.074 Sum_probs=148.6
Q ss_pred CChhHHHHHHHHHHHhcC---CCCHHHHHhh-----cCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHH
Q 008538 142 LPLGAVALLGLGASVLTK---TLTFSAAFSA-----FGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLG 213 (562)
Q Consensus 142 i~~~~~all~~~~l~~~g---~~~~~~v~~~-----~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~ 213 (562)
++...+++++..++++.+ ..+.|+++++ .+|+++ +.|.|.+.++++++|+.+.+++++.+..+++. .
T Consensus 318 l~~a~VaLiga~vill~~~~~~~~~e~~l~~~~~~~v~w~tL--f~glFivV~~i~~~gl~~~i~~~~~~~~~~~~---~ 392 (513)
T PRK09547 318 LHLAEVGLIGLSVIILATAFTGVTDEHAIGKAFEEALPFTAL--LTVFFAVVAVIIDQHLFAPIIQFVLQASEHAQ---L 392 (513)
T ss_pred HhHHHHHHHHHHHHHHhhcccCCCHHHHHhhCcCCCCChHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCh---H
Confidence 678888888887777765 5788999988 999999 99999999999999999999999999887655 6
Q ss_pred HHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCC-CCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHH-
Q 008538 214 YSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSN-TGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSA- 291 (562)
Q Consensus 214 ~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~-~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~- 291 (562)
..+...++++|+++||.+.++ .|.|++.... ..|.. ++ +. ..++.++..++++||..||+|..+|++..
T Consensus 393 ~~~~~~sgllSaiiDNVp~~~--~~ip~v~~~~-~~g~~~~~--~~----~~L~~ALa~Ga~Lggn~T~iGasAnlv~~~ 463 (513)
T PRK09547 393 SLFYIANGLLSSISDNVFVGT--VYINEAKAAL-ESGAISRK--QF----ELLAVAINTGTNLPSVATPNGQAAFLFLLT 463 (513)
T ss_pred HHHHHHHHHHHHhhchHHHHH--HHHHHHHHHH-hcCCCccc--cc----hHHHHHHHHhcccchhhhHHHHHHHHHHHH
Confidence 678889999999999999987 8999999887 66662 21 00 15788899999999999999999999998
Q ss_pred HHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Q 008538 292 TLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYP 331 (562)
Q Consensus 292 g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~ 331 (562)
+.+++ |+++||+||++.++|.+++..++..++......
T Consensus 464 ~~~~~--g~~isf~~~~k~glP~tlv~~~v~~~~v~~~~~ 501 (513)
T PRK09547 464 SALAP--LIRLSYGRMVWMALPYTIVLTLVGLLAVEFTLA 501 (513)
T ss_pred HHHhC--CCcccHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 87776 899999999999999999988888776655443
|
|
| >cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=153.92 Aligned_cols=172 Identities=20% Similarity=0.316 Sum_probs=146.4
Q ss_pred CchHHHHHHHHHHHHHhcCCChHHHHhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 008538 380 VDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILI 459 (562)
Q Consensus 380 i~~~~vali~~~ll~l~g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~ 459 (562)
++..++++++..++.+.|+.++||++ ++++|+.+++++|++.++.+++++|+.|++++.+.+..++.+ ...+.++.
T Consensus 9 ~~~~~~al~~~~~l~~~g~~~~~~~~-~~~~~~~i~~~~g~~~l~~~l~~tG~~~~ia~~l~~~~~~~~---~~~~~~~~ 84 (396)
T cd00625 9 LPRAVVALLGAVLLVLLGVVSPKEAL-SAIDWETILLLFGMMILSAALEETGLFDRLAAKLARASKGSR---RLLLLLML 84 (396)
T ss_pred CCHHHHHHHHHHHHHHhcCCCHHHHH-HHcCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCCCc---hHHHHHHH
Confidence 67888999999888889999999987 679999999999999999999999999999999987765432 22222222
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhH
Q 008538 460 LLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPP-YFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGF 538 (562)
Q Consensus 460 ~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p-~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~ 538 (562)
... ..+.+.||++...++.|++.++++..|.|| ....+...++++.+++.+|+++++|.+..+.++++++||+|.+.
T Consensus 85 ~~~--~ls~~~s~~~~~~il~Pi~~~~~~~~g~~~~~~l~~~~~~~a~~g~~~tp~gs~~n~i~~~~~~i~~~~~~~~~~ 162 (396)
T cd00625 85 LTA--ALSAFFSNDATAVLLTPIVLALLRKLGLSPPVPLLLALAFAANIGGAATPIGNPPNLIIASLSGLGFLDFLAFMA 162 (396)
T ss_pred HHH--HHHHHHhchhhhhhhHHHHHHHHHHhCCCCCccHHHHHHHHHhccccccccCCCCceEEEeCCCCCHHHHHHHHh
Confidence 222 234578999999999999999999999999 88888888888888899999999999999988999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008538 539 IVSIVNIIIWLGVGGVWWK 557 (562)
Q Consensus 539 ~~~li~~vv~~~~~~~~w~ 557 (562)
|..++..++...+.+.++|
T Consensus 163 ~~~i~~~~~~~~~~~~~~~ 181 (396)
T cd00625 163 PPALGLLLLLLGLLYLLFR 181 (396)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999988888777776665
|
These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump. |
| >COG2056 Predicted permease [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-12 Score=125.59 Aligned_cols=360 Identities=14% Similarity=0.184 Sum_probs=199.4
Q ss_pred CChhHHHHHHHHHHHhcCCCCHHHHHhhcCC------CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCC-----ch
Q 008538 142 LPLGAVALLGLGASVLTKTLTFSAAFSAFGD------PIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSS-----SL 210 (562)
Q Consensus 142 i~~~~~all~~~~l~~~g~~~~~~v~~~~~~------~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~-----~~ 210 (562)
+|.-..-+++.....+.|.++.+|..+.+.. ++-+-..-.-.++.++.|||+.+.+++++.++.++. ..
T Consensus 19 vnVvlaL~isAlvaGl~~gl~l~eti~~f~~GlgG~a~vALSYalLGafAvaIsksGltd~l~~kvi~~i~~~~~~~~~~ 98 (444)
T COG2056 19 VNVVLALIISALVAGLVGGLGLTETINAFISGLGGNANVALSYALLGAFAVAISKSGLTDVLAKKVIRLLGGDESRRGKT 98 (444)
T ss_pred HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccccchh
Confidence 3433333444445566677777775543322 222222222334688999999999999999998651 11
Q ss_pred hHHHHHHHHhhhhhcccCch-hhhhh--hhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchh
Q 008538 211 GLGYSLVFSEALLAPAIPSV-SARAG--GIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAAN 287 (562)
Q Consensus 211 ~~~~~l~~~~~~ls~~~~~~-~a~~~--~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n 287 (562)
..-+.+.++..+.+.+..|. +.+++ -++.|-.+.+..+++.|++ .+.+.+.++-...-+..|+|-+.
T Consensus 99 ~~K~~l~~~i~~~a~~SQNliPVHIAFIPilIPPLL~lfn~LkiDRR---------~vAc~ltFGL~apYi~LPvGFG~- 168 (444)
T COG2056 99 LKKYLLLLIILLIACFSQNLIPVHIAFIPILIPPLLSLFNKLKIDRR---------LVACVLTFGLTAPYILLPVGFGL- 168 (444)
T ss_pred hHHHHHHHHHHHHHHhcCCccceeeeeehhhhhHHHHHHHHhhhhHH---------HHHHHhhcccccceeEecchHHH-
Confidence 11222233333334333333 33431 1244444556677777643 45555555544445556666543
Q ss_pred HHHHHHHhh---hcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHhcCCCC-hhHHHHHH
Q 008538 288 PLSATLTLN---TINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMS-TNEKIMAG 363 (562)
Q Consensus 288 ~i~~g~l~~---~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~l~ 363 (562)
+..+.+.+ +.|.+++..+-++.+..+++-+++-.....+..|||+++...+..|+.++..++..+.+ ++.+.+++
T Consensus 169 -IF~~ii~~n~~~a~~~~~~~~V~~am~ip~lgMi~GLl~ai~~~YrKpReY~~~~~~~~~~~~~~~~~~~~~~~~~alv 247 (444)
T COG2056 169 -IFQSIILDNINAAGVSLSVNQVPKAMWIPGLGMIVGLLLAIFVSYRKPREYQTNEIEEAENAIEDYAALEEYKLALALV 247 (444)
T ss_pred -HHHHHHHHHHHhcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccccchhhhhhhhhcchhhHHHHHHHH
Confidence 22232222 13667788887888877776544333333334366554322111111112222222111 33333333
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhcCCChHHHHhccCChhHHH------HHHHHHHHHHHHHHhCHHHHHH
Q 008538 364 TLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLT------WFAALIAMAGYLNKYGLITWFS 437 (562)
Q Consensus 364 i~~~~i~l~i~~~~~~i~~~~vali~~~ll~l~g~~~~~~~~~~~i~w~~ll------~~~~~~~l~~~l~~tG~~~~la 437 (562)
..++++..-... +. -+...-++.+.+++++.|+.+|||. ++.++-+.-+ .+..+-.+++++++||-.+.+.
T Consensus 248 aiv~af~vQl~~-~~-~smilgal~gliv~~~~gv~~~ke~-d~~~~~G~kmMa~IgFVMl~AaGfa~Vi~~TG~V~~LV 324 (444)
T COG2056 248 AIVVAFAVQLLT-FT-DSMILGALAGLIVFFLSGVIKWKET-DDVFTEGVKMMAFIGFVMLVAAGFAEVINATGAVEELV 324 (444)
T ss_pred HHHHHHHHHHHh-cc-ccchHHHHHHHHHHHHhcceehhhh-HHHHHhhHHHHHHHHHHHHHHhHHHHHHHhccCHHHHH
Confidence 333333332221 11 1233456778888888899999875 3434322211 1122334678899999999999
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccc
Q 008538 438 QTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIG 517 (562)
Q Consensus 438 ~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~ 517 (562)
+...+..++. . .....++.++-.++-..+.|.-++..+...+..|++..+|.+|......++.++..+..-+|.+..
T Consensus 325 ~s~~~~~g~s-K--~l~a~lMlvvGLlITMGIGsSF~TIPIIA~iyVPLc~~lGFSp~ati~liG~AaALGDAGSPASDS 401 (444)
T COG2056 325 ESSSSIIGQS-K--LLAALLMLVVGLLITMGIGSSFGTIPIIAAIYVPLCLKLGFSPLATIALIGTAAALGDAGSPASDS 401 (444)
T ss_pred HHHHHHhccc-H--HHHHHHHHHHHHHHhccccccccchHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHhcCCCCCcccC
Confidence 9999988543 2 222233333333332357777888888888889999999999999888888888777666676654
Q ss_pred c
Q 008538 518 S 518 (562)
Q Consensus 518 ~ 518 (562)
+
T Consensus 402 T 402 (444)
T COG2056 402 T 402 (444)
T ss_pred C
Confidence 4
|
|
| >COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.8e-14 Score=146.61 Aligned_cols=175 Identities=22% Similarity=0.314 Sum_probs=153.1
Q ss_pred CCCchHHHHHHHHHHHHHhcCCChHHHHhc-cCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHH
Q 008538 378 LNVDPVTAAILGLSILLVTGVVTWKECLAE-SVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFG 456 (562)
Q Consensus 378 ~~i~~~~vali~~~ll~l~g~~~~~~~~~~-~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~ 456 (562)
.+.+.++.+..|+.++...++.+++|+.+. .++|++++++.|++.++..++++|..||.+.++.+..++.+. .....
T Consensus 22 ~~~~~~~~a~~Ga~l~l~~giv~~~d~~~~~~i~~~~i~~l~~mmiiv~~l~~~G~Fe~~a~~~v~~s~g~~~--~L~~~ 99 (424)
T COG1055 22 RKLPRAWAALLGALLALFLGIVTPEDALVVIGIDWNVILLLLGMMIIVLLLDESGFFEWLAIKMVKRSKGSGL--KLLLL 99 (424)
T ss_pred CcCchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCcc--hHHHH
Confidence 457889999999999999999999999743 689999999999999999999999999999999998776543 22222
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHH
Q 008538 457 ILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGY 536 (562)
Q Consensus 457 il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~ 536 (562)
+..+...+ +.+.+|++++.++.|++..+++..|.||..+.++..+.+|.++..||+|+|+|.+.....++++.||.+.
T Consensus 100 l~ll~a~~--SA~l~N~tt~LlltPivl~~~~~~~~~~~p~l~~~~f~aN~gg~~t~iGdp~niii~~~~gisF~~f~~~ 177 (424)
T COG1055 100 LVLLGALL--SAFLDNDTTALLLTPIVLAVARALGVNPVPFLIAEVFIANIGGLATPVGDPPNIIIASAAGISFNDFLAN 177 (424)
T ss_pred HHHHHHHH--HHHHcccceeehhhhHHHHHHHHcCCCccHHHHHHHHHHcccccccccCChHHHHHHHhcCCCHHHHHHH
Confidence 23333333 4688999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 008538 537 GFIVSIVNIIIWLGVGGVWW 556 (562)
Q Consensus 537 g~~~~li~~vv~~~~~~~~w 556 (562)
..|.+++++++...+.+.++
T Consensus 178 m~~p~l~~li~~~~vl~~~~ 197 (424)
T COG1055 178 MFPPSLISLIATLVVLYLLF 197 (424)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888877776
|
|
| >PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-13 Score=141.06 Aligned_cols=192 Identities=22% Similarity=0.294 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhcCCChHHHHhc-cCChhHHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 008538 361 MAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLAE-SVAWDTLTWFAALIAMAGYLNKYGLITWFSQT 439 (562)
Q Consensus 361 ~l~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~l~g~~~~~~~~~~-~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~ 439 (562)
+..+|.+++++.+.. ..|++.++.+..|+.+....|..+++|+.+. ...|+..+++.|.+.++..+++.|+.||++.+
T Consensus 2 a~~if~~tl~~vi~r-P~~l~~~~~A~~GA~l~l~~G~v~~~d~~~v~~~~~~~~l~~i~~~vis~~ld~~G~F~~~A~~ 80 (423)
T PF02040_consen 2 AIAIFLLTLLLVIWR-PRGLPEAVWAVLGAALALALGVVPLSDALAVWGIVWDVTLFFIAMIVISELLDEAGFFDWLALH 80 (423)
T ss_pred hHHHHHHHHHHHhcc-CCCCChHHHHHHHHHHHHHhCCcCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 356777887766664 4588999999999999999999999997522 46799999999999999999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHhhhhccccccc
Q 008538 440 VVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPP---YFVAMVLAFFSNLMGGLTHYGI 516 (562)
Q Consensus 440 l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p---~~~~~~~~~~~~~~~~~tp~~~ 516 (562)
+.+.-++.+. . .+..+..+.. ..+.|.||++++.++.|++..+++..|++| ..+.++..+.+|..+...|+++
T Consensus 81 ~a~~a~g~~~--r-Lf~~v~ll~~-~vTaflsND~talilTPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~LpvSN 156 (423)
T PF02040_consen 81 AARWARGSGR--R-LFLLVYLLGA-VVTAFLSNDATALILTPIVLALARRLGLNPKPPLPFLFACAFIANTASLLLPVSN 156 (423)
T ss_pred HHHhcCCCcc--h-HHHHHHHHHH-HHHHHHhccchhhhhHHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhccccccC
Confidence 9997666432 2 3333333322 345789999999999999999999999986 5777888888888899999999
Q ss_pred ccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008538 517 GSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWK 557 (562)
Q Consensus 517 ~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~~~w~ 557 (562)
++|.+.++..++++.||.+..++..++.+++...+.+.++|
T Consensus 157 ltNLv~~~~~~~~f~~y~~~m~~P~l~ai~~t~~vl~~~fr 197 (423)
T PF02040_consen 157 LTNLVAADAFGISFLEYAAVMALPSLAAIAVTYLVLWLYFR 197 (423)
T ss_pred cHHHHHHHccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888777766665
|
Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane |
| >PLN00137 NHAD transporter family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.7e-13 Score=140.88 Aligned_cols=191 Identities=10% Similarity=0.051 Sum_probs=146.1
Q ss_pred ChhHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhcCC---ChHHHHhccCC------hhHHHHHHHHHHHHH
Q 008538 355 STNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVV---TWKECLAESVA------WDTLTWFAALIAMAG 425 (562)
Q Consensus 355 ~~~e~~~l~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~l~g~~---~~~~~~~~~i~------w~~ll~~~~~~~l~~ 425 (562)
++++...+.+|+++..+.++++..+++...++++++.++.+.+.. +.++.+ +.++ |+++.++.|++.++.
T Consensus 2 ~~~~~~~~~if~~~y~~i~~e~~~~i~~~~~al~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~L~g~m~iv~ 80 (424)
T PLN00137 2 ANQGLAMALVFGAGYAGIIFEESLAFNKSGVALLMAVSLWVIRAIGAPSLEIVT-LELRHALAEVSEIVFFLLGAMTIVE 80 (424)
T ss_pred CcchhHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHhccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777889999999999999777788889999998888765555 777766 6788 999999999999999
Q ss_pred HHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHH-HHHHHHH
Q 008538 426 YLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFV-AMVLAFF 504 (562)
Q Consensus 426 ~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~-~~~~~~~ 504 (562)
.++++|+.|++++++.+. ++ +...+.+..+... .+.+.||++++.++.|+...+++.. +|... ....+++
T Consensus 81 ~l~~~g~f~~~a~~~~~~----~~-~~l~~~~~~~~~~--lS~~l~N~tt~l~~~p~~~~~~~~~--~~~~~~~~~~~~a 151 (424)
T PLN00137 81 IVDAHQGFKLVTDSITTR----SP-RTLLWVVGFITFF--LSSILDNLTTTIVMVSLLRKLVPPS--EYRKLLGAVVVVA 151 (424)
T ss_pred HHHHcCcHHHHHHHHHhc----CH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHh
Confidence 999999999999998875 12 2232223333333 3469999999999999998887664 45544 5667899
Q ss_pred HhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008538 505 SNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVW 555 (562)
Q Consensus 505 ~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~~~ 555 (562)
+|+|+..||+|+|+|.+..+.+++++.|++....+..++..++...+...+
T Consensus 152 aNiGg~~TpiGnp~NllI~~~~~lsf~~f~~~l~~P~li~~lv~~~i~~~~ 202 (424)
T PLN00137 152 ANAGGAWTPIGDVTTTMLWIHGQISTLPTMQGLFLPSAVSLAVPLALMSLT 202 (424)
T ss_pred ccccceeccCCCcCeeeehccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888889988866555555555544444443333
|
|
| >PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.9e-11 Score=123.07 Aligned_cols=365 Identities=18% Similarity=0.169 Sum_probs=214.4
Q ss_pred CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCC
Q 008538 173 PIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSN 252 (562)
Q Consensus 173 ~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~ 252 (562)
+-+-.++..++-.+.-||||+++.+.++..++.. +++........+++|...++.. .+ ++.|+.-.+.++.|.+
T Consensus 79 ~PLG~Vlv~mlgvgvAE~sGll~a~~r~~~~~~p---~~~vt~~v~f~Gi~sniasDAg-~V--vl~PL~a~iF~~~GRh 152 (502)
T PF03806_consen 79 PPLGLVLVMMLGVGVAEKSGLLSALMRKLVLKAP---PRLVTPAVVFVGIMSNIASDAG-YV--VLPPLAAMIFAAVGRH 152 (502)
T ss_pred CcHHHHHHHHHHHHHHHHhchHHHHHHHHhccCC---cchhhHHHHHHHHHhcccccce-eE--eHHhhHHHHHHHcCCC
Confidence 4555555566667889999999999998886643 3334444444555555554433 32 5889988888999987
Q ss_pred CCCCcchhhhHHHHHHHHHHhhhhhc-ccccccchhHHHHHHHhhhcC-----CCcc--HHHHHHHHhHHHHHHHHHHHH
Q 008538 253 TGDGTEHKLGSWLMLTCFQTSVISSS-MFLTAMAANPLSATLTLNTIN-----QPIG--WMDWAKAAIVPGLVSLIVVPL 324 (562)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~a~~gg~-~t~iG~~~n~i~~g~l~~~~g-----~~is--~~~~~~~~~~~~li~~~~~~~ 324 (562)
|- .-+..+|++..||. ..+.-++.-.+.+|+-+++.+ .+++ -..||... -+++..++..+
T Consensus 153 Pl----------aGi~~afa~vs~GfsAnl~i~~~D~ll~giT~~Aa~~idp~~~v~p~~N~yF~~a--St~~l~~v~~~ 220 (502)
T PF03806_consen 153 PL----------AGIAAAFAGVSGGFSANLLIGSTDALLAGITTSAAQIIDPSYTVNPLMNYYFMIA--STFVLTIVGTW 220 (502)
T ss_pred hH----------HHHHHHHHHHhccccceeeccchhHHHHHhHHHHHHhcCCCceechHHHHHHHHH--HHHHHHHHHHH
Confidence 64 44455666665554 334444566777776665432 2333 23333332 33333344444
Q ss_pred HHHHHcCCCCCCCCChhHHHHHHHHhcCCCChhHHHHH-------HHHHHHHHHHHhcC--CC-----C---CchHHHHH
Q 008538 325 LLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMA-------GTLLLTVGLWVFGG--RL-----N---VDPVTAAI 387 (562)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l-------~i~~~~i~l~i~~~--~~-----~---i~~~~val 387 (562)
+.-++..|+..+.+...+.. +..++..+.+++||+.+ +++++.+++....+ .+ | -++-.-++
T Consensus 221 vt~kivePrl~~~~~~~~~~-~~~~~~~~Lt~~EkkgLr~Agi~~l~~lall~ll~iP~~a~LR~~~tG~l~~SPf~~gI 299 (502)
T PF03806_consen 221 VTEKIVEPRLGKYDGDADDD-EIEEASSSLTPREKKGLRWAGIALLAFLALLLLLLIPENAPLRSPETGSLFPSPFMKGI 299 (502)
T ss_pred Hhhhhhcccccccccccccc-ccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCccccCCCCCcccCChHHHhH
Confidence 44444333332221111111 11111234788888765 22222222223322 11 1 12222222
Q ss_pred HHHHHHH--H----h-----cCCChHHHHhccCC--------hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 008538 388 LGLSILL--V----T-----GVVTWKECLAESVA--------WDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLG 448 (562)
Q Consensus 388 i~~~ll~--l----~-----g~~~~~~~~~~~i~--------w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~ 448 (562)
+..+.+. + . ...+.+|+. +.+. +-++.++++- +...+++|++.+.++-.-.+.+++.+
T Consensus 300 IpiI~l~F~i~GivYG~~sG~iks~~Dv~-~~M~~~m~~m~~yiVL~F~aaQ--Fia~F~~Snlg~i~Av~GA~~L~~~~ 376 (502)
T PF03806_consen 300 IPIIFLFFLIPGIVYGIASGTIKSDKDVV-KMMSKGMKSMAPYIVLAFFAAQ--FIAYFNWSNLGTILAVKGAEFLKSLG 376 (502)
T ss_pred HHHHHHHHHHHHHHHhhhhceecCHHHHH-HHHHHHHHHhHHHHHHHHHHHH--HHHHHhhcchHHHHHHHHHHHHHhcC
Confidence 2222111 1 1 244566654 2222 2223333333 44778999999999999988888776
Q ss_pred chhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheec----
Q 008538 449 LSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYG---- 524 (562)
Q Consensus 449 ~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~---- 524 (562)
.+....++...++..++..++.|.++--+++.|++.|+...+|++|...-.+.-++.+....+||... ...++.+
T Consensus 377 ~~~~~l~i~fill~a~iNLfi~S~SaKWailAPifVPM~m~lg~sP~~tQ~aYRigDS~TN~ItPl~~-yf~lil~~~qk 455 (502)
T PF03806_consen 377 LPGIPLIIGFILLTAFINLFIGSASAKWAILAPIFVPMFMLLGYSPALTQAAYRIGDSSTNIITPLMP-YFPLILGFAQK 455 (502)
T ss_pred CCcHHHHHHHHHHHHHHHHhhhcchhhHHHHHhHHHHHHHHcCCCHHHHHHHHHhccccccccCccHH-HHHHHHHHHHH
Confidence 54333444455555666778999999999999999999999999999998889898887666676642 2223323
Q ss_pred C-CCcCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008538 525 A-NYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGL 561 (562)
Q Consensus 525 ~-g~~~~~~~~k~g~~~~li~~vv~~~~~~~~w~~~Gl 561 (562)
+ .+...++.+...+|.++...+.+.+.... |-.+|+
T Consensus 456 Y~k~~giGTlis~mlPysi~~lv~w~~ll~~-W~~lgl 492 (502)
T PF03806_consen 456 YDKKAGIGTLISLMLPYSIAFLVVWTLLLIV-WYLLGL 492 (502)
T ss_pred hCcCccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCC
Confidence 2 45789999999999999999887666555 444554
|
AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity []. |
| >KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-13 Score=137.77 Aligned_cols=173 Identities=19% Similarity=0.169 Sum_probs=138.6
Q ss_pred CChhHHHHHHHHHHH-hcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHh---CCCchh--HHHH
Q 008538 142 LPLGAVALLGLGASV-LTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLF---GSSSLG--LGYS 215 (562)
Q Consensus 142 i~~~~~all~~~~l~-~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~---g~~~~~--~~~~ 215 (562)
.+.+.+|+++.++++ +...-+.+..+++..|++.+|+.++|++..+++|.|+.+|+.+...... +.+.+. .+++
T Consensus 495 l~LgW~AIlgA~llLIl~d~~D~e~il~rVews~LLFfaalFI~~e~v~~lGli~~l~dlte~vil~v~e~~~~~vAi~i 574 (685)
T KOG2639|consen 495 LSLGWTAILGAILLLILADIKDIEAILHRVEWSTLLFFAALFILMEAVDKLGLIEWLGDLTEPVILSVGESYRLMVAIVI 574 (685)
T ss_pred CCccHHHHHHHHHHHHHhchhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCHHHHHHHhhhHHhhhcchhhhhHHHHHH
Confidence 567888988666544 4555556667899999999999999999999999999999999776553 444443 3345
Q ss_pred HHHHhhhhhcccCchhhhhhhhhhHhHHHHHH--HcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHH
Q 008538 216 LVFSEALLAPAIPSVSARAGGIFLPIVKSLCL--ACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATL 293 (562)
Q Consensus 216 l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~--~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~ 293 (562)
+...+++.|+|++|.+..+ +|.++..++.+ +.|.+.. .++.+..++++.||..|++|+.+|.++++.
T Consensus 575 ilw~SAlasafidNipvt~--~mVkl~~~lv~~~~~glpl~---------pliWaL~~ga~~gGNgTLiGasANvv~A~i 643 (685)
T KOG2639|consen 575 ILWVSALASAFIDNIPVTA--IMVKLLTSLVANSAVGLPLQ---------PLIWALALGACLGGNGTLIGASANVVAAGI 643 (685)
T ss_pred HHHHHHHHHHHhccCcchH--HHHHHHHHHhhccccCCCcc---------hHHHHHHhhhhhcCCceeechhhHHHHHHH
Confidence 6667899999999999987 89998887654 4454432 455678888999999999999999999998
Q ss_pred HhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHH
Q 008538 294 TLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLL 326 (562)
Q Consensus 294 l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~ 326 (562)
.++- |++++|.+||+.|+|..+....++..+.
T Consensus 644 AeqH-GYkltF~~fF~~GfPmml~si~i~t~yL 675 (685)
T KOG2639|consen 644 AEQH-GYKLTFTQFFKVGFPMMLGSITIGTVYL 675 (685)
T ss_pred HHHc-CceEEehhHHHhcccHHHHHHHHHHHHH
Confidence 7665 9999999999999999988776665443
|
|
| >PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.7e-13 Score=137.42 Aligned_cols=167 Identities=26% Similarity=0.461 Sum_probs=137.9
Q ss_pred CCchHHHHHHHHHHHHHh-----cCCChHHHHhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHH
Q 008538 379 NVDPVTAAILGLSILLVT-----GVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQL 453 (562)
Q Consensus 379 ~i~~~~vali~~~ll~l~-----g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~ 453 (562)
+.+....+.+++.++.+. +..+.+|.. +.++|+.++++.|.+. ++.++++|..|++++++.+..++.+ +.
T Consensus 17 ~~~~~~~~~~~a~~~~l~g~~~~~~~~~~~~~-~~~~~~~l~ll~g~~~-~~~l~~tG~~~~ia~~i~~~~~~~~--~~- 91 (351)
T PF03600_consen 17 KIPVVAAALLGALLVALFGFPGFGVISPEEAF-SFIDWNTLILLFGMMI-GAALEETGVFDWIARKIVRKSGGKP--WR- 91 (351)
T ss_pred hhhHHHHHHHHHHHHHHHHhccccccCHHHHH-HHcchhHHHHHHHHHH-HHHHHHcCChHHHHHHHHhccCCCH--HH-
Confidence 466666677777777766 778888987 7899999999999999 9999999999999999998876642 12
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCH--H
Q 008538 454 SFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPL--A 531 (562)
Q Consensus 454 ~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~--~ 531 (562)
.+..+..+.. ..+.+.+|++++.++.|++.++++..|++|..+.+++.++++.++..||+|+|+|.++.+..++++ .
T Consensus 92 l~~~~~~~~~-~lS~~~~N~~~v~~~~Pi~~~~~~~~~i~~~~~l~~l~~~a~~gg~~t~iG~p~nl~i~~~~~~~~~~~ 170 (351)
T PF03600_consen 92 LLLLLMLVTA-LLSAFLDNTTVVLIMIPIVLSLARKLGIPPSPLLMPLAFAANIGGMLTPIGNPTNLIIANASGLPFFGF 170 (351)
T ss_pred HHHHHHHHHH-HHHHhhhcchHHHhhHHHHHHHHHHcCCChHHHHHHHHHHhccccccCcCCCcchhhhhhhcccccchh
Confidence 2223333332 234689999999999999999999999999999999999999998999999999988877777888 9
Q ss_pred HHHHHhHHHHHHHHHHHHHH
Q 008538 532 KWWGYGFIVSIVNIIIWLGV 551 (562)
Q Consensus 532 ~~~k~g~~~~li~~vv~~~~ 551 (562)
|+++.+.|..++..++....
T Consensus 171 ~~~~~~~p~~i~~~~~~~~~ 190 (351)
T PF03600_consen 171 DFFALGLPAVIVGLLVLIFI 190 (351)
T ss_pred hhHhhhHHHHHHHHHHHHHH
Confidence 99999999988877776543
|
Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.2e-11 Score=116.98 Aligned_cols=324 Identities=15% Similarity=0.106 Sum_probs=192.8
Q ss_pred hccCChhHHHHHHHHHHHh-cCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHH
Q 008538 139 AQPLPLGAVALLGLGASVL-TKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLV 217 (562)
Q Consensus 139 ~~~i~~~~~all~~~~l~~-~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~ 217 (562)
.+.+..+..+.+++..+.+ +|.- | .+.++|+++.++.....++.|+.+|-.|++.+.-.|..+++|+.+.+.-=
T Consensus 15 ~GGiglG~~gg~G~~il~~~fgl~-P----g~~PidVilII~aVi~a~a~lQaaGGlDylV~~Aek~LRk~Pk~It~lAP 89 (364)
T PF03605_consen 15 LGGIGLGLAGGLGVAILVFGFGLK-P----GSPPIDVILIIMAVITAAAALQAAGGLDYLVQIAEKILRKNPKYITFLAP 89 (364)
T ss_pred ccchHHHHHHHHHHHHHHHhcCCC-C----CCCCHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhCCCcEEEehh
Confidence 3446677777666666655 6643 3 24778899999999999999999999999998888888888888777666
Q ss_pred HHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhh
Q 008538 218 FSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNT 297 (562)
Q Consensus 218 ~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~ 297 (562)
+++.+++.+.+...... -++|+..+++++.|..|+ |.+.. ...++..+-.++|+ ....+.+....
T Consensus 90 ~vt~~~T~~~GTgh~a~--s~lPVI~eVA~~~~IRPe--------RPls~-svvASq~aItaSPi----SAA~~~~~~~l 154 (364)
T PF03605_consen 90 LVTYLFTFLAGTGHVAY--SLLPVIAEVAKENGIRPE--------RPLSI-SVVASQIAITASPI----SAATVAMIAIL 154 (364)
T ss_pred HHHHHHHHHhcccHHHH--HhhHHHHHHHHHcCCCCC--------CchHH-HHHHHhcchhcCcH----HHHHHHHHHHH
Confidence 67777776655444433 599999999999999987 23432 23445555445554 33333333332
Q ss_pred cC-CCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHHH-----Hh---cCCCChhHHHHHHHHHHH
Q 008538 298 IN-QPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKL-----EK---MGPMSTNEKIMAGTLLLT 368 (562)
Q Consensus 298 ~g-~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~e~~~l~i~~~~ 368 (562)
.+ .++++.|.+....|-++++.++..++..+.-| |.+++|+.+|..++.. ++ ..+.+++.|+...+|+..
T Consensus 155 ~~~~gv~~~~iL~V~iPat~ig~~~~a~~~~~~Gk-eL~~Dp~yq~rl~~g~~~~~~~~~~~~~~~~~~Ak~SV~iFl~g 233 (364)
T PF03605_consen 155 APAHGVSLLQILAVTIPATLIGVLVAAFVSSRRGK-ELDDDPEYQERLADGLVKPPIKEESTEKELPPSAKLSVLIFLLG 233 (364)
T ss_pred ccccCCCHHHHHHhhHHHHHHHHHHHHHHHHhcCC-ccccCHHHHHHHhccccccccccccccccCChhhHHHHHHHHHH
Confidence 34 78999999999999999988888877664433 3333333322221110 01 134567778888888776
Q ss_pred HHHHHh-cCC-------CC--CchH----HHHHHHHHHHHHhcCCChHHHHhccCChhHHHHHHHHHHHHHHHHH--hCH
Q 008538 369 VGLWVF-GGR-------LN--VDPV----TAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNK--YGL 432 (562)
Q Consensus 369 i~l~i~-~~~-------~~--i~~~----~vali~~~ll~l~g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~--tG~ 432 (562)
++..+. +.+ .+ ++.. .+.+..+.++.+....+.+++.+..+--.-+.-..+.+++++.=+. .+=
T Consensus 234 v~~VV~~g~f~~lrp~~~~~~l~m~~~Iq~~ML~~AalIll~cKv~~~~I~~~sVFkSGM~AvV~VfGVAWmgdTf~~ah 313 (364)
T PF03605_consen 234 VVAVVLYGSFPSLRPGFIKKPLSMTDAIQMFMLAAAALILLFCKVDPKKILSGSVFKSGMVAVVCVFGVAWMGDTFFNAH 313 (364)
T ss_pred HHHHHHHHHcccccccccccCCCHHHHHHHHHHHHHHHHHeeecCCHHHcccchhHHHhHHHHHHHhhHHHHHhhHHHHh
Confidence 655443 111 11 1111 2233333444445556667654322222223333334443333211 123
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCCh
Q 008538 433 ITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPP 494 (562)
Q Consensus 433 ~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p 494 (562)
.+.+-+.+.+..++.| +...+.++.. ....-|..+++.+++|+.. .+|++|
T Consensus 314 ~~~ik~~~~~~v~~~P---WlfAv~LF~~----S~Ll~SQAAT~~almPlgl----aLGI~P 364 (364)
T PF03605_consen 314 IDEIKDAAGSLVQQYP---WLFAVALFFV----SALLYSQAATTKALMPLGL----ALGIPP 364 (364)
T ss_pred HHHHHHHHHHHHHHCc---HHHHHHHHHH----HHHHhhHHHHHHHHHHHHH----HcCCCC
Confidence 3445555666665542 2222222222 2245688889989998764 677775
|
Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane |
| >TIGR00775 NhaD Na+/H+ antiporter, NhaD family | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.8e-12 Score=133.29 Aligned_cols=184 Identities=10% Similarity=0.023 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhcCCChHHH---Hh--ccCC-hhHHHHHHHHHHHHHHHHHhCHH
Q 008538 360 IMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKEC---LA--ESVA-WDTLTWFAALIAMAGYLNKYGLI 433 (562)
Q Consensus 360 ~~l~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~l~g~~~~~~~---~~--~~i~-w~~ll~~~~~~~l~~~l~~tG~~ 433 (562)
....+|+++..+.++++..+++...++++++.++.+.+..+.+|. .. +.+| |+++.++.|++.+.+.++++|..
T Consensus 5 ~~~~if~~~y~~i~~e~~~~~~r~~~al~ga~~~~~~~~~~~~~~~~~~~~~~~~d~~~ti~~LfgmMiiv~~l~~~g~f 84 (420)
T TIGR00775 5 QLCLLFLFGYLTIVFEHIVRVNKSAIWLAMGGLMWLVCFSHIPDVDHAALEEEIADMAQVIFFLFVAMAIVELIDAHKGF 84 (420)
T ss_pred HHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCCcH
Confidence 456788888888999877788899999999999988888877775 32 4678 99999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHH--HHHHHhhhhcc
Q 008538 434 TWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMV--LAFFSNLMGGL 511 (562)
Q Consensus 434 ~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~--~~~~~~~~~~~ 511 (562)
|+++..+.+..+ ....+.+..+..++ +.+.+|++++.++.|+...+++ .+|.....+ .++++|.|+..
T Consensus 85 ~~la~~l~~~s~-----r~Ll~~l~l~t~~l--Sa~LdN~tt~ll~~Pv~l~i~~---~~~~~~ll~~~i~~AANiGG~~ 154 (420)
T TIGR00775 85 SALVAWCVGKSR-----KKLLWLLGFLSFFL--SAALDNLTSIIIIISILKRLVK---AREDRLLLGAICVIAVNAGGAW 154 (420)
T ss_pred HHHHHHHHHHhH-----HHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHhc---cCCccchHHhHHHHhcccccce
Confidence 999998766422 12222233333333 4699999999999999999885 455444444 78999999999
Q ss_pred cccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHH
Q 008538 512 THYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGG 553 (562)
Q Consensus 512 tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~ 553 (562)
||+|+|+|.+..+.+++++.|++....+..++.+++...+..
T Consensus 155 TpIGdP~Ni~i~~~~~i~f~~f~~~l~~p~li~l~v~~~il~ 196 (420)
T TIGR00775 155 TPLGDVTTTMLWINGKIRFSGIIMPLFVPSLVCVVVAGFCGQ 196 (420)
T ss_pred eeCCCcchhHhHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888899997777766666666555444333
|
These proteins are members of the NhaD Na+:H+ Antiporter (NhaD) Family (TC 2.A.62). A single member of the NhaD family has been characterized. This protein is the NhaD protein of Vibrio parahaemolyticus which has 12 GES predicted transmembrane regions. It has been shown to catalyze Na+/H+ antiport, but Li+ can also be a substrate. |
| >TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-09 Score=114.36 Aligned_cols=353 Identities=12% Similarity=0.044 Sum_probs=212.5
Q ss_pred CCHHHHH----hhcCC--CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhh
Q 008538 161 LTFSAAF----SAFGD--PIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARA 234 (562)
Q Consensus 161 ~~~~~v~----~~~~~--~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~ 234 (562)
.+++|.. +++.. +.++.++..-.+.+....+|..+.+.+.-.+. -++..+....++++.++|...++...+.
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~i~il~~~G~~~~~~~~~g~i~~l~~~g~~~--i~p~~~~~~~Fl~~~~~s~~~Gss~gt~ 127 (454)
T TIGR00931 50 VGYNDLESAIIDGIKIGIKAILILALVGILIGTWIMGGTVPTLIYYGLSI--ISPEWFAVSTLLICMIVSSFTGTSWGTV 127 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 5676643 33332 33333333344568899999999998765655 3678888899999999999999888776
Q ss_pred hhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHH
Q 008538 235 GGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVP 314 (562)
Q Consensus 235 ~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~ 314 (562)
+.+.|+.+++++..|.++. ...-++..++..|--..|+++..|..... .+.+..|..+..++.
T Consensus 128 -~~~g~~l~~i~~~~g~~~~---------~~agai~sGa~fGD~~sP~Sdtt~l~a~~-------~~~~~~~~v~~~~~~ 190 (454)
T TIGR00931 128 -GTIGVAMMGIGTGLGIDLA---------IAAGAVVCGAYFGDKLSPLSDTTNFASGI-------VGVDLFDHIRHLLYT 190 (454)
T ss_pred -HHHHHHHHHHHHHcCCCHH---------HHHHHHHHHHHHcCCCCCCCcHHHHHHHH-------cCCCHHHHHHHHHHH
Confidence 4789999999999999863 23223344555577788998887765542 457888999999988
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCC--ChhHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 008538 315 GLVSLIVVPLLLYIIYPPTVKSSP--DAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSI 392 (562)
Q Consensus 315 ~li~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~e~~~l~i~~~~i~l~i~~~~~~i~~~~vali~~~l 392 (562)
+++..++.......+-+...++.. +..+...+.+++..+.+ ...++-.++++++-+... .-+..-.++.+.+.+
T Consensus 191 ~~~a~~i~~v~~~i~g~~~~~~~~~~~~~~~~~~~l~~~~~~~---~l~LlP~ilvIiLal~~~-~vi~aL~igi~~g~i 266 (454)
T TIGR00931 191 TVPSFVITAILFLVIGRSYATSNTQPDKVQAMLTALDSQFTLS---VLTLIPPLLVVILAMRKK-PTIPVLVVGALTGII 266 (454)
T ss_pred HHHHHHHHHHHHHHHhcccccccCcHhHHHHHHHHHHccCCCC---HHHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHH
Confidence 888776666555444433211111 12222233333333322 334444444444433321 111111122222222
Q ss_pred -HHHhcCCChHHHH----------------hc-----cCC--hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC
Q 008538 393 -LLVTGVVTWKECL----------------AE-----SVA--WDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLG 448 (562)
Q Consensus 393 -l~l~g~~~~~~~~----------------~~-----~i~--w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~ 448 (562)
..+.+..+..|.+ ++ .+. .+++.++.....+++.++++|..|.+.+++.+..++..
T Consensus 267 i~~~~qg~s~~~~~~~~~~G~~~~t~~~~v~~ll~~GGi~sM~~~i~lii~~~~lggil~~~G~l~~l~~~l~~~i~s~~ 346 (454)
T TIGR00931 267 TAAFVQGADVVRWITIAQNGFSMETGNEVLDGLLNRGGLQSMMWSLSLVMIALTFGGVLQRIGVLDVILQSANKKIISTW 346 (454)
T ss_pred HHHHhCCCCHHHHHHHHHcCccccccchHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHcCCCc
Confidence 2223323333322 11 111 13555667777888999999999999999988766543
Q ss_pred chhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCc
Q 008538 449 LSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYV 528 (562)
Q Consensus 449 ~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~ 528 (562)
. ..+.......+....+.+++....+.-|++.++.+..|++|.-....+--++.....+.|.++.. ....+.-++
T Consensus 347 ~----~~l~t~~~~~i~~~i~~~~~~sil~~G~~~k~~~d~~~i~r~~LA~~ld~s~t~~~~LiPws~~g-~~~~~~lgv 421 (454)
T TIGR00931 347 T----FDCSTSTSSIGVNVVTCEQYLSILLPGKTFESFYTKLNLAKKNLSRTLEDAGTLVNPLIPWGVSG-AYMAGTLGV 421 (454)
T ss_pred c----eehHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhHHHHHHHH-HHHHHHcCC
Confidence 2 12222222333333467888888999999999999999999888877766655555556664332 333344455
Q ss_pred CHHHHHHHhHHHH
Q 008538 529 PLAKWWGYGFIVS 541 (562)
Q Consensus 529 ~~~~~~k~g~~~~ 541 (562)
+.-++..+.+..-
T Consensus 422 ~~~~~iPy~fy~~ 434 (454)
T TIGR00931 422 DTISYLPFAFLLF 434 (454)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666655433
|
A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria. |
| >PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.3e-09 Score=107.96 Aligned_cols=365 Identities=18% Similarity=0.163 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCHHHHHh----hcCCCHHHHHHHHHHHHHHHHHh-CHHHHHHHHHH
Q 008538 128 AIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFS----AFGDPIPWLIALAFFFARGFIKT-GLGNRIAYQFV 202 (562)
Q Consensus 128 ~i~~~~i~lw~~~~i~~~~~all~~~~l~~~g~~~~~~v~~----~~~~~~i~~~~g~~~l~~~l~~t-Gl~~~la~~l~ 202 (562)
..|...+++...+++|.+...+.+...+.+....++++..+ ...|+++..+....++.+.++++ |..|++.+.+.
T Consensus 6 ~~f~iii~~~~~rki~i~~s~~~ga~~l~~~~~~~~~~~~~~~~~~~~~~~i~~il~i~~i~~~~~~~~g~l~~~~~~l~ 85 (385)
T PF04165_consen 6 IVFLIIIVLLLLRKINIGISILLGALILGLLFGLGLDAFLKALASSSSWDTIVLILLIYFIMGLMEKLSGQLDRMVESLK 85 (385)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444444434567888887766666655554456666443 23556666666666677777777 99999999999
Q ss_pred HHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhccccc
Q 008538 203 KLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLT 282 (562)
Q Consensus 203 ~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~i 282 (562)
+.++ +.....+-.+.+++ ++...+. .-.|++.+.+++.+.++++ +.+-.+-.=++.-. ..|.
T Consensus 86 ~l~~---R~~~~~~PAlIGLL----PmpGGA~--fSAPmV~~~~~~~~ls~e~---kt~iNywFRHiwE~------~~Pl 147 (385)
T PF04165_consen 86 GLFP---RVSLAFIPALIGLL----PMPGGAL--FSAPMVEEAAEKMGLSPEE---KTFINYWFRHIWEF------FWPL 147 (385)
T ss_pred HHHH---HHHHHHHHHHHhcc----cCCCcce--eehHHHHhhhhhccCCHHH---HHHHHHHHHHHHHH------Hhhh
Confidence 8875 22232333333333 3333333 5789999999988887752 22222222233221 2343
Q ss_pred ccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHhcCCCChhHHHHH
Q 008538 283 AMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMA 362 (562)
Q Consensus 283 G~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l 362 (562)
-|+++.+.-+ .+++..++.....|.++..++.+++.. .|+.+++..+.++ . ++..+.+
T Consensus 148 --YpgiiLas~l-----~gi~~~~~v~~~~P~~~~~~~~G~~~~---~r~~~~~~~~~~~-~-----------~~~l~s~ 205 (385)
T PF04165_consen 148 --YPGIILASAL-----SGISVGEFVLAMWPITLLAFLIGWLFF---LRPLKKSEKKPRS-L-----------KDLLKSL 205 (385)
T ss_pred --hhHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHHHHH---hccccccccCCcc-h-----------HHHHHHH
Confidence 3556554322 248889999999999988887776433 2332211111110 0 1111111
Q ss_pred HHHHHHHHH-HHhcCCCCCchHHHHHHHHHHHHHhcCCChH---HHHhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHH
Q 008538 363 GTLLLTVGL-WVFGGRLNVDPVTAAILGLSILLVTGVVTWK---ECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQ 438 (562)
Q Consensus 363 ~i~~~~i~l-~i~~~~~~i~~~~vali~~~ll~l~g~~~~~---~~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~ 438 (562)
.-+.+++++ ..+ +++.......+.....+.+..+.+ +.+++..++..+..+.+.+.+.+.++.||..|.+.+
T Consensus 206 ~Pil~~i~l~v~~----~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~a~~~ki~~~i~~im~Fk~~l~~tG~~~~l~~ 281 (385)
T PF04165_consen 206 WPILVIILLSVLF----KLPLALGLLIALLAILIYNRFRRKEIKEVLKEALEPKILLLIIGIMIFKEILEATGVVEELPE 281 (385)
T ss_pred hHHHHHHHHHHHH----cchHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 111111111 222 344432222222333334444444 666678999999999999999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhc-ccccccc
Q 008538 439 TVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGG-LTHYGIG 517 (562)
Q Consensus 439 ~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~-~tp~~~~ 517 (562)
.+.+. +.+. .++...+.++....-..+.+.+.+..|++.++... .+- ..+++.++..|. ++|. +-
T Consensus 282 ~l~~~--~ip~-----~li~~lipFivG~~TGi~~a~vgi~fPll~~l~~~--~~~----~~la~~~g~~GvmlSP~-Hl 347 (385)
T PF04165_consen 282 FLSSL--GIPP-----FLIIALIPFIVGLITGITQAFVGIAFPLLAPLIGG--LPY----LVLAYASGFAGVMLSPV-HL 347 (385)
T ss_pred HHHhC--CCcH-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc--chH----HHHHHHHHHHHHhhchH-HH
Confidence 87753 2221 22233333333222333567778899998876532 222 223344443343 4443 44
Q ss_pred cchheecCCCcCHHHHHHHhHHHHHHHHHHHHH
Q 008538 518 SAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLG 550 (562)
Q Consensus 518 ~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~ 550 (562)
.-.+..++-+.+.++.+|..++..++..++..+
T Consensus 348 CLvlT~eYFk~~~~~v~k~l~~p~~i~~~~~~~ 380 (385)
T PF04165_consen 348 CLVLTAEYFKADLGKVYKKLLPPALIFLAAGLL 380 (385)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677889999999888877665555433
|
|
| >COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-09 Score=108.64 Aligned_cols=368 Identities=18% Similarity=0.172 Sum_probs=206.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCC
Q 008538 172 DPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGS 251 (562)
Q Consensus 172 ~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~ 251 (562)
.+-+-.++..++=.+.-|+||+++.+-+++.++.. ++++.-.++..+++|...+. .+.+ ++.|+.--+.++.|.
T Consensus 89 FpPLG~VLv~mLGigvAE~SGll~alm~~~~~~~p---k~llt~~vvfigi~s~~asD-aayV--VlpPlaAmiF~a~GR 162 (516)
T COG2978 89 FPPLGTVLVVMLGIGVAERSGLLSALMRKLLNKVP---KRLLTFTVVFIGILSHIASD-AAYV--VLPPLAAMIFIALGR 162 (516)
T ss_pred CCchHHHHHHHHhhhhhhhcccHHHHHHHHHhhcc---hHHHhhHHHHHHHHHHHHhh-ccee--EecchHHHHHHHhCC
Confidence 44455555555556788999999999998887653 44454445555555544333 2222 588888888899998
Q ss_pred CCCCCcchhhhHHHHHHHHHHhhhhhcc-cccccchhHHHHHHHhhhcC-----CCcc--HHHHHHHHhHHHHHHHHHHH
Q 008538 252 NTGDGTEHKLGSWLMLTCFQTSVISSSM-FLTAMAANPLSATLTLNTIN-----QPIG--WMDWAKAAIVPGLVSLIVVP 323 (562)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~a~~gg~~-t~iG~~~n~i~~g~l~~~~g-----~~is--~~~~~~~~~~~~li~~~~~~ 323 (562)
.|- .-+..+++...||.. -...+...++..|+-++++. .+++ -.+|+.... +++..++++
T Consensus 163 HPl----------AGlaaafAgvsgGfsanl~~~~~D~Ll~GfTq~AA~iidp~~~vnp~~NwyF~~as--~~vl~~i~~ 230 (516)
T COG2978 163 HPL----------AGLAAAFAGVSGGFSANLLPGTIDPLLAGFTQPAAQIIDPSYQVNPLMNWYFIAAS--VFVLTLIGW 230 (516)
T ss_pred CcH----------HHHHHHHhhcccccccccccCcchHHHHHhhHHHHHhcCCccccCcchhHHHHHHH--HHHHHHHHH
Confidence 764 333455555555553 34444556788887666432 1222 334443332 222223333
Q ss_pred HHHHHHcCCCCCCCCChhHHHHHHHHhcCCCChhHHHHH----HHHHHHHHHH---HhcC--CC-----C---CchHHHH
Q 008538 324 LLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMA----GTLLLTVGLW---VFGG--RL-----N---VDPVTAA 386 (562)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l----~i~~~~i~l~---i~~~--~~-----~---i~~~~va 386 (562)
++.-++..||.-..++..++.++..++....+++||+.+ +.+++++.+. +... .+ + ..+-.-+
T Consensus 231 fvTdKivEPRLg~~~~~~~~~~~~~~~~~~~t~~Ekkgl~~Agi~~l~~~al~~~~~iP~~~~Lr~~~~~~~~~sPf~~s 310 (516)
T COG2978 231 FVTDKIIEPRLGPYQGLSSEAEDDENASQELTALEKKGLKWAGISFLATIALLAALVIPENSPLRDPDGGLVPDSPFMKS 310 (516)
T ss_pred HHhccccccCCCCCCCcchhhhhhhhhhhhcCHHHhcccchhhHHHHHHHHHHHHHHcCCCCcccCCCCCcCCCChHHHh
Confidence 333333333321111111111222334445677776643 2233222222 2211 11 1 1121222
Q ss_pred HHHHHHHH--Hh----c-----CCChHHHHhccCC--------hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC
Q 008538 387 ILGLSILL--VT----G-----VVTWKECLAESVA--------WDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGL 447 (562)
Q Consensus 387 li~~~ll~--l~----g-----~~~~~~~~~~~i~--------w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~ 447 (562)
++..+.++ +. | +.+.||+. +.+. +-++.|+++-| .+...+|++.++++-.-.+.++..
T Consensus 311 iV~~i~~~FlipGlvYG~vtgtik~~kDvv-~~M~~~m~sMg~yiV~~FfaaQF--va~FnwSn~G~~~AV~GA~~L~~~ 387 (516)
T COG2978 311 IVPFIFLLFLIPGLVYGRVTGTIKNDKDVV-NMMAESMSSMGGYIVIAFFAAQF--VAFFNWSNLGTIMAVKGADFLKAI 387 (516)
T ss_pred HHHHHHHHHHHhhhhhheeeeeeeccHHHH-HHHHHHHHHhhhHHHHHHHHHHH--HHHhcccccchhheechHhHHHHc
Confidence 22222221 11 2 34555654 2221 22233333333 366788999999887777666655
Q ss_pred CchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccc-hheec--
Q 008538 448 GLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSA-PVFYG-- 524 (562)
Q Consensus 448 ~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n-~i~~~-- 524 (562)
+.+-...++..+++...+...+.|.++--.++.||+.|+...+|.+|...-.+.-++.+....+||..+--. .+.+.
T Consensus 388 gl~g~~lil~~illsa~inL~IgSASAkWailaPIfVPMlMllGysPe~tQaayRigDS~tniiTPlm~yfpLil~~~~k 467 (516)
T COG2978 388 GLTGLPLILGFILLSAFINLFIGSASAKWAILAPIFVPMLMLLGYSPEFTQAAYRIGDSVTNIITPLMPYFPLILAYAQK 467 (516)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHhcCCHHHHHHHHHhcccccccccchhhhHHHHHHHHHH
Confidence 332223333444455556677999999999999999999999999999988888888877666677643222 22222
Q ss_pred C-CCcCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 008538 525 A-NYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGL 561 (562)
Q Consensus 525 ~-g~~~~~~~~k~g~~~~li~~vv~~~~~~~~w~~~Gl 561 (562)
+ .+...+.......|+++...+.+.+..+.|| .+|+
T Consensus 468 Y~k~~GvGTL~s~mLPYsi~f~i~w~~l~~iw~-~lgl 504 (516)
T COG2978 468 YDKDAGVGTLMSMMLPYSIAFLIAWTLLLLIWF-LLGL 504 (516)
T ss_pred hCcCccHHHHHHHhhhHHHHHHHHHHHHHHHHH-HhCC
Confidence 2 3467899999999999999999877766654 4443
|
|
| >COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.3e-09 Score=103.85 Aligned_cols=355 Identities=17% Similarity=0.182 Sum_probs=208.1
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhC--CCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHH
Q 008538 168 SAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFG--SSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSL 245 (562)
Q Consensus 168 ~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g--~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i 245 (562)
+.-..+....++....++..++++|..+.+.+...|-.+ ++|..++..-.+++.+++-++++.+... ..+..-..++
T Consensus 69 s~r~agLgm~Im~~~GfA~yM~~iga~~~~V~l~skPL~~ikspy~ll~~ay~i~~~m~~ai~SAtGlg-~llmaTLfPv 147 (451)
T COG3069 69 SNRGAGLGMMIMALCGFARYMTHIGANDAVVKLASKPLKYIKSPYLLLIAAYFVACLMSLAIPSATGLG-VLLMATLFPV 147 (451)
T ss_pred hcccccHHHHHHHhhcHHHHHHHhChhHHHHHHHhchhhhhcccHHHHHHHHHHHHHHHHHcccccchH-HHHHHHHHHH
Confidence 444557778888888889999999999999988877553 5788888888899999999999987654 2333344455
Q ss_pred HHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHH-HHHhHHHHHHHHHHHH
Q 008538 246 CLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWA-KAAIVPGLVSLIVVPL 324 (562)
Q Consensus 246 ~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~-~~~~~~~li~~~~~~~ 324 (562)
....|.++. - +.+.++...+...-.++ .|.+.+ .|..|.++. ||+ .+..|.++...+....
T Consensus 148 lv~~Gvsr~----------a--aaAi~Ast~~i~lsp~s-~~sv~a---Ae~sgm~i~--~~~~~~~lpv~i~~iI~~ai 209 (451)
T COG3069 148 LVNLGVSRG----------A--AAAICASTAAIILSPTS-GDSVLA---AQVSGMKIA--DFAFHYQLPVSIAAIIGMAI 209 (451)
T ss_pred HHHhcccch----------h--hHHHhhchHHheeCCCC-cchHHH---HHhcCCceE--eeeeccCcHHHHHHHHHHHH
Confidence 667777643 1 23333433333322223 344433 233354332 332 3334444433322211
Q ss_pred --HHHHHcCCCCCCCCChhHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHH-hc----CCCCCchHHHHHHHHHHHHH--
Q 008538 325 --LLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKIMAGTLLLTVGLWV-FG----GRLNVDPVTAAILGLSILLV-- 395 (562)
Q Consensus 325 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~i~~~~i~l~i-~~----~~~~i~~~~vali~~~ll~l-- 395 (562)
+.|-.|+++++..+. ++..+++.+... ....++.-+.-.++..+ +. .+...+...+.+++..+..+
T Consensus 210 ~hff~qr~~Dkk~~~~~-e~~eq~~~~~~~----p~~YAilPl~PlI~~lig~~~~~l~~ikl~i~t~mlI~l~i~m~ve 284 (451)
T COG3069 210 AHFFWQRYLDKKENIEH-EMLEQKEIDTVV----PAFYAILPLTPLIGVLIGFDGKGLPQIKLHIITIMLISLLIAMLVE 284 (451)
T ss_pred HHHHHHHHhhhhcccch-hHHHHhhhccCC----chhhhhhhhhhHHHHHHhhccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 122233333333222 111111211111 11222221111111111 11 12234444455555544333
Q ss_pred -hcCCChHHHHh------ccCC---hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH
Q 008538 396 -TGVVTWKECLA------ESVA---WDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYS 465 (562)
Q Consensus 396 -~g~~~~~~~~~------~~i~---w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~ 465 (562)
++..+.||.++ +... -+++.++.++-.+++.++.+|..|.+-+.....-.+ . ...-+++.+..++.
T Consensus 285 firk~n~k~~~~~l~~ff~GMg~~fanVV~liVAa~vFA~GL~tiGaIdalI~~a~~~g~g--~--~~vmli~~l~~~L~ 360 (451)
T COG3069 285 FLRKFNLKEVMDDLEAFFDGMGDAFANVVMLIVAAGVFAQGLKTIGAIDALISGATSFGSG--G--IGLMLILVLLTFLA 360 (451)
T ss_pred HhccccHHHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHhhHhhHHHHHHHHHHhcCCC--c--HHHHHHHHHHHHHH
Confidence 33334443331 2221 467888888889999999999999998887754222 1 22223334444444
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHH
Q 008538 466 HYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNI 545 (562)
Q Consensus 466 ~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~ 545 (562)
.....|..+-...+...+-++|..+|++|..+.++...+++++..+.|+... ...+-|..+++..|..|...+..++.+
T Consensus 361 aIvtGSGnApf~AF~~lip~~Aa~lgi~~v~l~mpm~~As~igRt~SPisgV-vvavaG~a~vSPfe~vKRts~pm~~~l 439 (451)
T COG3069 361 AIVTGSGNAPFIAFVELIPKLAAGLGINPVYLIMPMLQASALGRTLSPVSGV-VVAVAGMAKVSPFEVVKRTSVPMLVGL 439 (451)
T ss_pred HHHhCCCCchhhhHHhhcchhhhhcCCChHHHhhhHHHHHhhccccccccce-eeeeccccccChhheeeccCcchhhHH
Confidence 4446677777777888888899999999999999999999999999998643 233457788999999999999888877
Q ss_pred HHHHHH
Q 008538 546 IIWLGV 551 (562)
Q Consensus 546 vv~~~~ 551 (562)
+...+.
T Consensus 440 v~v~l~ 445 (451)
T COG3069 440 VTVILA 445 (451)
T ss_pred HHHhhe
Confidence 766543
|
|
| >PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=102.22 Aligned_cols=127 Identities=17% Similarity=0.113 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHHHHh-cCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Q 008538 127 LAIFLATIVGIIAQPLPLGAVALLGLGASVL-TKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLF 205 (562)
Q Consensus 127 l~i~~~~i~lw~~~~i~~~~~all~~~~l~~-~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~ 205 (562)
+..++.++..-..+++|.+..++....+... ...++.||++++|+++.++.+.|...+.+..+++|..|+++++..+..
T Consensus 8 l~~Lv~~i~ig~~~kiNiGllAi~~A~vig~~~~g~~~~~ii~gfP~~lf~~l~GVt~lf~iA~~NGTle~la~~~v~~~ 87 (149)
T PF07158_consen 8 LLALVAVIVIGFVRKINIGLLAIAFAFVIGTFLAGMSDKEIIAGFPTSLFITLVGVTLLFGIAQVNGTLELLAKKAVRLV 87 (149)
T ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHcCCCHHHHHhhCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHc
Confidence 3444455555567899999999887766553 466799999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCC
Q 008538 206 GSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTG 254 (562)
Q Consensus 206 g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~ 254 (562)
|+++..+.+.+++++++++.+.+...++. +++.|+..+++++.|++|.
T Consensus 88 ~~r~~liP~v~f~~~~~lsa~G~g~~~~~-Ai~aPia~~lA~~~gi~p~ 135 (149)
T PF07158_consen 88 GGRPALIPWVMFLLAAVLSAIGAGSIAAV-AIMAPIAMSLARRTGINPL 135 (149)
T ss_pred CCCceehHHHHHHHHHHHHHhCCChHHHH-HHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999998877766 4899999999999999874
|
The MatC protein is an integral membrane protein that could function as a malonate carrier []. |
| >COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-09 Score=105.19 Aligned_cols=328 Identities=16% Similarity=0.114 Sum_probs=180.3
Q ss_pred ccCChhHHHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHH
Q 008538 140 QPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFS 219 (562)
Q Consensus 140 ~~i~~~~~all~~~~l~~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~ 219 (562)
+.+..+..+-+++..+.+...++| .+.++|+++.++.....+++++.+|-+|++.+.-.|..+++|+.+.+.--++
T Consensus 20 GGIglG~~GGlGv~il~f~f~~~P----~~~PidViliImAVv~aaaamQaaGGLD~mvqiAEkiLRknPK~iT~lAP~V 95 (436)
T COG2704 20 GGIGLGVAGGLGVLILVFIFGLKP----GKPPIDVILIIMAVVAAAAAMQAAGGLDYMVQIAEKILRKNPKYITILAPFV 95 (436)
T ss_pred cceeeeecccccHHHHhhhhcCCC----CCCChhhHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHhCCCeEEEehhHH
Confidence 346666666666655544333443 4677889999999999999999999999988877777778888877766666
Q ss_pred hhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcC
Q 008538 220 EALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTIN 299 (562)
Q Consensus 220 ~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g 299 (562)
+..++.+.+...++. -.+|+..+++++.|.+|++ .+.. ...++..+ .+.+|.+.....+.....+
T Consensus 96 ty~lT~maGTGh~vy--SilPVI~eVA~~~gIrPeR--------Pls~-avVsSQ~a----ItASPISAAVV~~~a~l~~ 160 (436)
T COG2704 96 TYTLTILAGTGHVVY--SILPVIAEVAKKNGIRPER--------PLSA-AVVSSQIA----ITASPISAAVVYMSAVLEP 160 (436)
T ss_pred HHHHHHhhcCCceee--eehhHHHHHHHHcCCCCCC--------cchH-HHHHhhhh----hhcCchHHHHHHHHHHHhh
Confidence 666765554444433 4899999999999999872 2322 22334433 3444444333333232223
Q ss_pred CCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHH-HHh-------cCCCChhHHHHHHHHHHHHHH
Q 008538 300 QPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEK-LEK-------MGPMSTNEKIMAGTLLLTVGL 371 (562)
Q Consensus 300 ~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~e~~~l~i~~~~i~l 371 (562)
.++++.+-+....|-++++..+..++.++.. +|.+++|+-++..++. .++ ..+.+++.|....+|+..++.
T Consensus 161 ~g~~~l~ll~v~IPaTl~g~~~~~l~~~~~g-keL~~Dp~yq~RL~~~~~~~~~~~t~~~~~~~~~Ak~sv~iFL~a~~~ 239 (436)
T COG2704 161 LGISYLTLLMVTIPSTLLGVLLMALFVWFRG-KELDDDPEYQKRLSEGLIRDGDTGTKLEKELPKSAKLSVWIFLGAVVV 239 (436)
T ss_pred cCcchheeeeEEecHHHHHHHHHHHHHHHhc-ccccCCHHHHHHhhCcccccCCcccccccccCccchhhHHHHHHHHHH
Confidence 3455677777778888888777776666554 3333333322221111 011 123455667777777766655
Q ss_pred HHhcC--------CCCC---chH---HHHHHHHH-HHHHhcCCChHHHHhccCChhHHHHHHHHHHHHHHHHH--hCHHH
Q 008538 372 WVFGG--------RLNV---DPV---TAAILGLS-ILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNK--YGLIT 434 (562)
Q Consensus 372 ~i~~~--------~~~i---~~~---~vali~~~-ll~l~g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~--tG~~~ 434 (562)
.++-. +.+- +.. ...++.+. +..+.-..|.++..+..+--.-+.-..+.+.+++.-+. .+-.+
T Consensus 240 vV~~a~~~s~r~~~~g~~~l~m~~~Iq~~ML~~a~li~l~~K~d~~~I~~~svFksGM~A~v~ifGiAWl~dTf~~~h~~ 319 (436)
T COG2704 240 VVLYAAAPSLRPGFVGKPLLSMTLAIQIFMLSAAALIVLLCKTDPASILNGSVFKSGMIACVAIFGIAWLGDTFVSAHID 319 (436)
T ss_pred HHHHHhccccccccCCCCcccHHHHHHHHHHHHhHheeEEecCChhhccCcchhhhhhHHHHHHHhHHHHHHHHHHhhHH
Confidence 44311 1111 111 11122211 11122234555543222211222233344444433221 23345
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHH
Q 008538 435 WFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVA 498 (562)
Q Consensus 435 ~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~ 498 (562)
++-+....+.++.| |. ..+.++.+.. ..-|..+++..++|+ +.++|++|....
T Consensus 320 ~iK~~~~~lv~~~P--W~-~AvalF~vS~----lv~SQaAT~~al~P~----~lalGv~~~~lv 372 (436)
T COG2704 320 EIKAVAGELVQTYP--WL-LAVALFFVSA----LVNSQAATAKALVPV----ALALGVPPLILV 372 (436)
T ss_pred HHHHHHHHHHHcCc--HH-HHHHHHHHHH----HHhhHHHHHHHHHHH----HHHcCCCHHHHH
Confidence 55555666666542 22 2222222222 345677788888884 468899985543
|
|
| >TIGR00774 NhaB Na+/H+ antiporter NhaB | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-09 Score=111.43 Aligned_cols=199 Identities=20% Similarity=0.107 Sum_probs=140.3
Q ss_pred CCHHHHHHHHHH-HHHHHHHHhccCChhHHHHHHHHHHHh----cCCCCHHHHH-hhcC--CCHHHHHHHHHHHHHHHHH
Q 008538 119 VSKNAWQLLAIF-LATIVGIIAQPLPLGAVALLGLGASVL----TKTLTFSAAF-SAFG--DPIPWLIALAFFFARGFIK 190 (562)
Q Consensus 119 lt~~~~~~l~i~-~~~i~lw~~~~i~~~~~all~~~~l~~----~g~~~~~~v~-~~~~--~~~i~~~~g~~~l~~~l~~ 190 (562)
.|++++.-+.+= +..+.+.+--..+...++++++...++ +|+.+ |... +.|. -+.--++...|.+.+.+.+
T Consensus 293 ~~~~~~~~l~~q~~~~~~l~~~la~h~a~vg~igl~vii~~t~~~g~~~-eh~~g~af~ealpftall~vff~~vavi~~ 371 (515)
T TIGR00774 293 RTNQDKIKLWVQALIAVWLIVALALHLAAVGLIGLSVIILATSFTGVTD-EHSIGKAFEESLPFTALLAVFFSVVAVIID 371 (515)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcc-hhhhhHHHhhhccHHHHHHHHHHHHHHHHh
Confidence 345555444442 222222233335566666665554332 45543 3322 2222 2334444556667788999
Q ss_pred hCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCC-CCCCCcchhhhHHHHHHH
Q 008538 191 TGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGS-NTGDGTEHKLGSWLMLTC 269 (562)
Q Consensus 191 tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~-~~~~~~~~~~~~~l~~~~ 269 (562)
..+.+-+.++++..-+ ......+...++++|.++||.+.++ .|.|++..+ ...|. +++ +. ..++.++
T Consensus 372 q~lf~p~i~~vl~~~~---~~q~~~ilw~SgilSa~IDNVP~va--tmIPvIk~l-~~~G~~~~~--~~----~~LWWAL 439 (515)
T TIGR00774 372 QELFSPIIDFVLAAEE---KTQLALFYVFNGLLSSISDNVFVGT--VYINEAKAA-LTEGLITRE--QF----ELLAVAI 439 (515)
T ss_pred hhhhHHHHHHHHcCCC---ccchHHHHHHHHHHHHhhccHHHHH--HHHHHHHHH-HhcCCCccc--cc----cHHHHHH
Confidence 9999999999886543 3346677888999999999999997 899999888 56666 221 00 1578889
Q ss_pred HHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Q 008538 270 FQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYP 331 (562)
Q Consensus 270 ~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~ 331 (562)
+.++++||..||+|+.+|++..+..++. |.++||+||+|+|+|++++..++..++.+.+..
T Consensus 440 ALGA~LGGNaTpiGAsANLVv~~iA~k~-G~rISF~~flK~GlP~TLvsliVs~lyl~~~~~ 500 (515)
T TIGR00774 440 NTGTNLPSVATPNGQAAFLFLLTSALAP-LIRLSYGRMVYMALPYTIVLAIVGLLGIEFFLE 500 (515)
T ss_pred HHhccccccccHHHHHHHHHHHHHHHhC-CCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988876 999999999999999999999888877766543
|
These proteins are members of the NhaB Na+:H+ Antiporter (NhaB) Family (TC 2.A.34). The only characterised member of this family is the Escherichia coli NhaB protein, which has 12 GES predicted transmembrane regions, and catalyses sodium/proton exchange. Unlike NhaA this activity is not pH dependent. |
| >KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-10 Score=121.11 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=118.1
Q ss_pred CCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhh
Q 008538 159 KTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIF 238 (562)
Q Consensus 159 g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~ 238 (562)
|..+|++.-..++|+++++..|++.++.+.++||+.+++++.+...-+-....+.++++++..+++.|.+|+++.. ++
T Consensus 420 ~l~~w~~~q~~fPWsIvlLlgGGfALakgv~sSGLs~~I~~~L~~l~~~p~~~i~li~~ll~~v~TeF~Sntata~--If 497 (586)
T KOG1281|consen 420 GLGLWKTVQFTFPWSIVLLLGGGFALAKGVSSSGLSSLIGNALKPLESLPVFAILLIFSLLILVVTEFVSNTATAS--IF 497 (586)
T ss_pred CccchhhhcccCCchHhhhhccchhhhhhcccccHHHHHHHhhhhcccCChHHHHHHHHHHHHHHHHHhcchhhee--eh
Confidence 4456777777999999999999999999999999999999999984344667778888999999999999988876 89
Q ss_pred hHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHH
Q 008538 239 LPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVS 318 (562)
Q Consensus 239 ~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~ 318 (562)
+|+..+++++++.+|. ++++..+.+++ -+++.|+++|||.++.++ .++.-.||.+.|..+.+.+
T Consensus 498 iPIl~ela~~l~~hpl---------yl~lp~tl~~S-fAf~LPvstpPNaivfs~------~~~k~~dm~~~G~~l~i~~ 561 (586)
T KOG1281|consen 498 IPILAELAEALGIHPL---------YLMLPTTLACS-FAFMLPVSTPPNAIVFSM------GDIKGKDMLKVGLFLNIGG 561 (586)
T ss_pred HHhHHHHHHhcCCCCc---------eeehhHHHHHH-HHHhcCCCCCCCeEEEee------cccchhhHhhhccchhHHH
Confidence 9999999999999986 56666655554 456789999999998765 2345558888887777654
Q ss_pred HHH
Q 008538 319 LIV 321 (562)
Q Consensus 319 ~~~ 321 (562)
.+.
T Consensus 562 ~a~ 564 (586)
T KOG1281|consen 562 PAI 564 (586)
T ss_pred HHH
Confidence 443
|
|
| >COG1757 NhaC Na+/H+ antiporter [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-07 Score=100.82 Aligned_cols=380 Identities=13% Similarity=0.113 Sum_probs=219.6
Q ss_pred cCChhHHHHHHHHHHHhcC---CCCHHHHH----hh--cCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchh
Q 008538 141 PLPLGAVALLGLGASVLTK---TLTFSAAF----SA--FGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLG 211 (562)
Q Consensus 141 ~i~~~~~all~~~~l~~~g---~~~~~~v~----~~--~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~ 211 (562)
.+|..+..+...+.....+ ..++++.. .+ -.-..++.+.+.-.+.+...++|..++..+..++.. .+..
T Consensus 43 ~~~~~~~l~~~~iva~~~~~~~~~~~~~~~~~~~~~~~~~~~alli~~~~g~~~~~w~~~g~v~~~~~~gL~~i--~~~~ 120 (485)
T COG1757 43 NLPAHVALIIAIIVALFIARGLGFNYKDIIILIFLGLLGALTALLILLGIGAAIAAWAASGIVPALVYYGLKLI--SPSI 120 (485)
T ss_pred CcchhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH--hHHH
Confidence 4555555444444443333 45666532 11 122455566666667788899999999999999886 4555
Q ss_pred HHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHH
Q 008538 212 LGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSA 291 (562)
Q Consensus 212 ~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~ 291 (562)
.....++.+.+.+.......-++ ....|....+.+..|.|+. ..+-....++..|..+.|+.+..|....
T Consensus 121 ~~~~~f~~t~ivs~~~gts~gt~-~t~~~~l~~I~~~~gap~~---------l~agai~~GAyfgd~ispisdTt~~aa~ 190 (485)
T COG1757 121 FFFDDFFITAIVSTATGTSWGTA-ATSGPALAGIGDSTGAPLA---------LTAGAILSGAYFGDKISPLSDTTILAAG 190 (485)
T ss_pred HHHHHHHHHHHHHHHhccchhhH-HHHHHHHHHHHHhcCCCHH---------HHHHHHHHHHHHHhhhhHhHHHHHHHhc
Confidence 66666777777776666666555 3689999999999999863 3333445666667777777777665332
Q ss_pred HHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCCh-hHHHHHHHHhcCC-CChhHHHHHHHHHHHH
Q 008538 292 TLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDA-PKLAQEKLEKMGP-MSTNEKIMAGTLLLTV 369 (562)
Q Consensus 292 g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~e~~~l~i~~~~i 369 (562)
..+..+.|-.+.++..++...++.....+..-.....+.++. ++ +++.++..+ .....-..++..+..+
T Consensus 191 -------~~~~~~~~~i~~~~y~~~~~~iv~~i~~~~lg~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~i~llp~~~v~ 261 (485)
T COG1757 191 -------TQGVDLVDHIKSNFYTTIPAFILALIVYFFLGFGSMLKAENRART--VEGLESILKVSFLINPILLLPYVTVL 261 (485)
T ss_pred -------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhh--HhhcchHHhhhhhHHHHHHHHHHHHH
Confidence 245677788888877777766666555544433322211111 11 111111000 0011122233333334
Q ss_pred HHHHhcCCCCCchHHHHH-HHHHHHHHh--------------cC-CChHHHHhccCC------hhHHHHHHHHHHHHHHH
Q 008538 370 GLWVFGGRLNVDPVTAAI-LGLSILLVT--------------GV-VTWKECLAESVA------WDTLTWFAALIAMAGYL 427 (562)
Q Consensus 370 ~l~i~~~~~~i~~~~val-i~~~ll~l~--------------g~-~~~~~~~~~~i~------w~~ll~~~~~~~l~~~l 427 (562)
.++..+... .+.-..+. .....-.+. |. .+.+|. .+..+ ..++.++.-+.++++.+
T Consensus 262 ~~~~~g~~~-~~~l~~~~~~~~~i~l~~g~~~~~~~~~~~~~g~~~~~~~~-~~~l~~G~~sM~~~i~ilila~siggi~ 339 (485)
T COG1757 262 VLALTGVPA-FPVLLAGINTAVIISLLYGGFSFLDAINALYLGFTTSVEEV-LKLLNRGIKSMLGAILILILAWSIGGIL 339 (485)
T ss_pred HHHHhCCch-HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHhccccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443211 11100111 111111111 11 122222 11111 12566666778899999
Q ss_pred HHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 008538 428 NKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNL 507 (562)
Q Consensus 428 ~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~ 507 (562)
++.|..+++.+.+.+...+.+. .-....+...+......++.....+..|+..++++..+.++......+-.++.+
T Consensus 340 ~~~G~~~~l~~~~~~~i~s~~~----l~~~~~l~~~~~~~~tg~~~~si~i~gpia~~i~~~~~~~~~~l~~~l~~gg~~ 415 (485)
T COG1757 340 EDLGTLEYLLSLLQKFIKSKGS----LPLIIFLLAILVAFATGTSWGSIIIMGPIAKEIADKLGLHSKRLSRALEAGGTF 415 (485)
T ss_pred HHcCcHHHHHHHHHhcCCCcch----hHHHHHHHHHHHHHHhhcceeeeeeeHHHHHHHHHHhCccHHHHHHHHHhcCee
Confidence 9999999999999987765421 122233333334445667888899999999999999999987655555555666
Q ss_pred hhcccccccccchheecCC-CcCHHHHHHHhHHHHHHHHHH
Q 008538 508 MGGLTHYGIGSAPVFYGAN-YVPLAKWWGYGFIVSIVNIII 547 (562)
Q Consensus 508 ~~~~tp~~~~~n~i~~~~g-~~~~~~~~k~g~~~~li~~vv 547 (562)
+..+.|.+...-....+.+ ..+..|++.+.+...+...+.
T Consensus 416 ~~~~~Pws~~~i~~s~~~~~~v~~~t~lPya~~~~~~~i~~ 456 (485)
T COG1757 416 GDHLSPWSDTTILSSTGLGCIVHVTTQLPYAFYAALLIIVA 456 (485)
T ss_pred cCCCCCcchhHHHHHhccCCCchhHhhHHHHHHHHHHHHHH
Confidence 6777888766655544444 578888888888776444333
|
|
| >TIGR00366 conserved hypothetical integral membrane protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.2e-07 Score=93.97 Aligned_cols=337 Identities=12% Similarity=0.077 Sum_probs=172.6
Q ss_pred HHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhh
Q 008538 182 FFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKL 261 (562)
Q Consensus 182 ~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~ 261 (562)
.+.+.++..+...+|+-+++.+.- ++++.......+++.+.|.+=-.-..+. -.=++.+++++.+ +.+ .
T Consensus 65 lvtG~~lA~sp~v~r~l~~la~~p-~t~~~ai~~v~~vs~~~s~inWG~gLV~---gallAre~Ar~~~-~vd---Y--- 133 (438)
T TIGR00366 65 LVTGYALAYSPIVYKLLKTIASLP-KTPKQAVALVTFIGSIACWINWGFGLVV---GAIFAREVARRVK-GSD---Y--- 133 (438)
T ss_pred HHHHHHHhcCHHHHHHHHHHHhCC-CCCCceeehHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHhcc-CCC---H---
Confidence 344888999999999999988765 5566655555555555554322222211 1223456676654 111 1
Q ss_pred hHHHHHHHHHHh------hhhhc-ccccccchhHHHHHHHhhhc-C--CCccHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Q 008538 262 GSWLMLTCFQTS------VISSS-MFLTAMAANPLSATLTLNTI-N--QPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYP 331 (562)
Q Consensus 262 ~~~l~~~~~~~a------~~gg~-~t~iG~~~n~i~~g~l~~~~-g--~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~ 331 (562)
.+..+.+|.. .++|+ -....++-|.+.... ++.. + .+++-.-+--+.+...++.+++..++.+...|
T Consensus 134 --~lliAaaY~G~~~W~~GlS~S~pl~~at~g~~l~~~~-~~~~~~~vIp~s~Tif~~~nl~~~~~~~v~~~l~~~~~~P 210 (438)
T TIGR00366 134 --PLLIACAYIGFLTWHGGLSGSMPLLAATPNNPLKHIF-VELFGRETIPLNETIFSGYNLIITAIIIVFLPFITYMMMP 210 (438)
T ss_pred --HHHHHHHHHHHHHHhcchHHHHHHHhcCCCChhhhhh-hccccCCeeCCchhhhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1222222321 11111 122333333332110 1000 1 12332222223333444555556666677777
Q ss_pred CCCCCCCChhHHHHHH----HHhc--CCCChhHHH----HH-HHHHHHHHHHHhcCC----CCCchHHHHHHHHHHHHHh
Q 008538 332 PTVKSSPDAPKLAQEK----LEKM--GPMSTNEKI----MA-GTLLLTVGLWVFGGR----LNVDPVTAAILGLSILLVT 396 (562)
Q Consensus 332 ~~~~~~~~~~~~~~~~----~~~~--~~~~~~e~~----~l-~i~~~~i~l~i~~~~----~~i~~~~vali~~~ll~l~ 396 (562)
++++....+++..+++ .++. .+.++.||. .+ .+..+..+.|+...+ ..++...+=++....- +.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tpae~le~S~~l~~lig~lg~~y~~~~F~~~g~~l~LN~vN~~Fl~~G-il 289 (438)
T TIGR00366 211 KRGELKSIDPKLLKKEKEEEKKLKKKEDATIAEKLENSRVLALLIGALGIIYLGMYFYEKGFNLTLNSVNLIFLIVG-LL 289 (438)
T ss_pred CCCCceeeChhhcccccccccccccCCCCChHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHH-HH
Confidence 6543321111111111 0011 112333332 22 222222222322111 1133322222111111 12
Q ss_pred cCCChHHHHh---ccCC--hhHHHHHHHHHHHHHHHHHhCHHH-----HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH
Q 008538 397 GVVTWKECLA---ESVA--WDTLTWFAALIAMAGYLNKYGLIT-----WFSQTVVKFVGGLGLSWQLSFGILILLYFYSH 466 (562)
Q Consensus 397 g~~~~~~~~~---~~i~--w~~ll~~~~~~~l~~~l~~tG~~~-----~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~ 466 (562)
...+++|..+ +..+ .+.++.+.-.-.+...++++|+.+ .+++.+.+..+. ...-.++.+...++.
T Consensus 290 ~~~tp~~~~~a~~~g~~~~~gi~l~fpf~agI~~im~~s~l~~~~ls~~la~~lvs~a~~-----~~f~l~~~l~~~liN 364 (438)
T TIGR00366 290 LHKTPMAYMRAITRAARSVAGILVQFPFYAGIMGMMEHSGVGGGGPATLITEFFINVANK-----DTFPLMTFFSAGLIN 364 (438)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHHHHHHhhCCc-----cHHHHHHHHHHHHHH
Confidence 2456665442 2222 344444444455567789998888 777666553222 112234446666777
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHH
Q 008538 467 YFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVS 541 (562)
Q Consensus 467 ~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~ 541 (562)
.+++|.++..++..|++.|+++.+|++|....+++.++.+....++|.=.-| ..+-.+++.||...+++...
T Consensus 365 fFIPSGsGqwai~aPImvP~a~~LGvs~~~tv~Ay~~GD~~tNlI~PfWaLP---~L~i~gL~arDImGy~~~~l 436 (438)
T TIGR00366 365 IFIPSGGGHWAIQGPIVIPAAQALGVDLGKSVMAIAYGDAWTNMAQPFWALP---ALGIAGLGARDIMGYCITAL 436 (438)
T ss_pred hcccCchHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHhHHHhhHHHHHH---HHHHcCCcHHHHhhHHHHHH
Confidence 8899999999999999999999999999999999999998866666653222 23455689999998877643
|
|
| >TIGR00784 citMHS citrate transporter, CitMHS family | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-08 Score=107.18 Aligned_cols=184 Identities=14% Similarity=0.085 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCHHH----HH----hhcCCCHHHHHHHHHHHHHHHHHhCHHH
Q 008538 124 WQLLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSA----AF----SAFGDPIPWLIALAFFFARGFIKTGLGN 195 (562)
Q Consensus 124 ~~~l~i~~~~i~lw~~~~i~~~~~all~~~~l~~~g~~~~~~----v~----~~~~~~~i~~~~g~~~l~~~l~~tGl~~ 195 (562)
+..+..++.++++...+..+....++++..+..+....+.++ +. +.++|.++++..+.| +++++++|..|
T Consensus 232 ~~~Ll~~l~viv~~~~~~~~~~~~~li~~~iall~~~~~~~~~~~~i~~~~~~~v~~~~Li~~aglf--~~~l~~~G~i~ 309 (431)
T TIGR00784 232 WFNLLLTISLMVFLVLGTKHLSVLFLIAFVLALTVNYPNVKMQKERIAAHSGNALTVVSMVFAAGVF--TGILSGTKMVD 309 (431)
T ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccccHhHHHHHHHHHHHH--HHHHhhcCHHH
Confidence 334444444444555666777777777777777776544433 33 334444555555555 89999999999
Q ss_pred HHHHHHHHHhCCCch-hHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhh
Q 008538 196 RIAYQFVKLFGSSSL-GLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSV 274 (562)
Q Consensus 196 ~la~~l~~~~g~~~~-~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~ 274 (562)
.+++.+.+..+.+.. .....+...+..+|.+++|++... .+.|++.+++++.|.++. .+......+.+
T Consensus 310 ~la~~l~~~~~~~~~~~~~~i~~~~s~~~s~~~sn~a~~~--~l~Piv~~ia~~~G~~~~---------~l~~a~~i~~~ 378 (431)
T TIGR00784 310 AMAGSLVSIIPSSMGGFFPVIVALTSIPFTFVMSNDAYYF--GVLPIFAEAASAYGIDPV---------EIARASIMGQP 378 (431)
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHcCCHHHHH--HHHHHHHHHHHHcCCCHH---------HHHHHHHhccc
Confidence 999999998765544 577788889999999999988876 799999999999999875 23333333333
Q ss_pred hhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHH
Q 008538 275 ISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYI 328 (562)
Q Consensus 275 ~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~ 328 (562)
. ...+|. +|+|.++.+. .+++..|+.|.+++..+.+.++....++.
T Consensus 379 ~-~~~SPv-s~~~~l~~~~------~~~~~~d~~k~~~~~~~~~~~v~~~~~~~ 424 (431)
T TIGR00784 379 V-HLLSPL-VPSTVLLVGM------LGVSLGDHQKFAVKWAVITSIVMTLLALL 424 (431)
T ss_pred c-hhcCCc-hHHHHHHHHc------cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 347888 7889888874 35788899999998888777666655543
|
This family includes two characterized citrate/proton symporters from Bacillus subtilis. CitM transports citrate complexed to Mg2+, while the CitH apparently transports citrate without Mg2+. The family also includes uncharacterized transporters, including a third paralog in Bacillus subtilis. |
| >PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-07 Score=99.08 Aligned_cols=164 Identities=14% Similarity=0.046 Sum_probs=118.7
Q ss_pred CCchHHHHHHHHHHHHHhcCCChHHHHhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 008538 379 NVDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGIL 458 (562)
Q Consensus 379 ~i~~~~vali~~~ll~l~g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il 458 (562)
|+..+..+.++..++.+.-..+++ ++++++++++.+...+.+++++||..|++++...+..++.+. ...+++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~vi~~Il~vg~~~~vl~~TGaid~~~~~~~k~~~~~~~--~~~lli~ 93 (433)
T PRK09412 21 GIGIGFAGGLGVLILTFIFGLKPG-----SIPIDVILIIMAVIAAIAAMQAAGGLDYLVKLAEKILRKNPK--YITFLAP 93 (433)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCC-----CCCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCc--hhHhHHH
Confidence 455566666666666543223333 388999999999999999999999999999988887776543 2222222
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheec--CCCcCHHHHHHH
Q 008538 459 ILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYG--ANYVPLAKWWGY 536 (562)
Q Consensus 459 ~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~--~g~~~~~~~~k~ 536 (562)
. +..+. +.+.++...+..+.|+..+++..+|.||........++++.+...+|++.+++.+.-. ..+++++|+.+.
T Consensus 94 i-~~~lf-s~~~~~~~~~i~~~PI~i~ia~~lG~d~~~~l~~~~~~a~iG~~aspin~~tv~ia~~ia~~gi~f~~~~~~ 171 (433)
T PRK09412 94 I-VTYLF-TFLAGTGHIAFSTLPVIAEVAKEQGIRPSRPLSIAVVASQIAITASPISAAVVAMSSVLEPLGVSYLTLLMV 171 (433)
T ss_pred H-HHHHH-HHHhcHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHhcccCCccHHHHHHHHHHhcCCCCHHHHHHH
Confidence 2 22222 2455565666789999999999999999766666777888888889998776665433 237999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 008538 537 GFIVSIVNIIIWLGV 551 (562)
Q Consensus 537 g~~~~li~~vv~~~~ 551 (562)
.+|..++..++....
T Consensus 172 ~lp~~iv~~~~~~~~ 186 (433)
T PRK09412 172 VIPSTLLAVMVAAFV 186 (433)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998877665443
|
|
| >TIGR00786 dctM TRAP transporter, DctM subunit | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-07 Score=96.57 Aligned_cols=147 Identities=14% Similarity=0.103 Sum_probs=109.0
Q ss_pred CCCCHHHHHhhcC------CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhh
Q 008538 159 KTLTFSAAFSAFG------DPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSA 232 (562)
Q Consensus 159 g~~~~~~v~~~~~------~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a 232 (562)
+..+++|..+.+. +...+.+.+...++..++++|+.+.+++.+.+. +.++......+.++..+++.+++|+.+
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~i~lii~aa~~~~~vL~~tG~~~~ia~~l~~~-~~~~~~~~~li~~~~~ilg~~~~~~a~ 319 (405)
T TIGR00786 241 RELTLKSLCDVLLESLRTTSMVMLIIAGATVFSWLLTHAQIPQRLADLLANA-ISSPIVFLIMINILLLIVGMFMDLTPA 319 (405)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHhC-CccHHHHHHHHHHHHHHHHhcccHHHH
Confidence 5578888766555 477777778899999999999999999999875 556666666778888899999999877
Q ss_pred hhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccc-cccchhHHH-HHHHhhhcCCCccHHHHHHH
Q 008538 233 RAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFL-TAMAANPLS-ATLTLNTINQPIGWMDWAKA 310 (562)
Q Consensus 233 ~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~-iG~~~n~i~-~g~l~~~~g~~is~~~~~~~ 310 (562)
.. ++.|+..+++++.|.||. .......+++.. +..+| +| .|... .++ .++++.||+|.
T Consensus 320 ~~--i~~PI~~p~a~~~Gv~p~---------~~~~~~~~~~~~-g~ltPPvg--~~~~~~~~~------~~~~~~~~~k~ 379 (405)
T TIGR00786 320 IL--ILTPILLPVAVHLGIDPV---------HFGVMFVLNLEI-GLLTPPVG--TNLFVASGV------AKMSITEVTRA 379 (405)
T ss_pred HH--HHHHHHHHHHHHcCCChH---------HHHHHHHHHHHH-hcCCCCch--HHHHHHHHh------cCCCHHHHHHH
Confidence 65 789999999999999875 233334444554 34554 65 34433 443 25889999999
Q ss_pred HhHHHHHHHHHHHHHH
Q 008538 311 AIVPGLVSLIVVPLLL 326 (562)
Q Consensus 311 ~~~~~li~~~~~~~~~ 326 (562)
+.|..++.+++..++.
T Consensus 380 ~~p~~~~~~~~~~~~~ 395 (405)
T TIGR00786 380 LWPFLLAQFLVLLLVT 395 (405)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998877665555443
|
force-dependent uptake of dicarboxylates into R. capsulatus. |
| >PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.9e-05 Score=85.10 Aligned_cols=129 Identities=14% Similarity=0.133 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHc
Q 008538 411 WDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASAL 490 (562)
Q Consensus 411 w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~ 490 (562)
|+..+-+...+.+++.+.++|....+++.+.+ .+.. ++.. .-.+-.+-.+.-.||+..-.++.++=...++++
T Consensus 386 ~~~~i~~~~~~~~a~vm~~SGm~~~la~~~a~-~G~~---yp~~---aP~lG~lG~FiTGS~T~SN~lF~~lQ~~~A~~l 458 (522)
T PF02652_consen 386 WPPAIAIIFFLALAYVMNYSGMTATLALALAA-TGAA---YPFF---APFLGWLGSFITGSNTSSNALFGPLQVTTAQQL 458 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-hCcc---HHHH---HHHHHHHhcccccchHHHHHHHHHHHHHHHHHc
Confidence 67788888899999999999999999999988 5542 1111 111112222346788888899999989999999
Q ss_pred CCChHHHHHHHHHHHhhhhcccccccccchhee----cCCCcCHHHHHHHhHHHHHHHHHHHHHH
Q 008538 491 GCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFY----GANYVPLAKWWGYGFIVSIVNIIIWLGV 551 (562)
Q Consensus 491 Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~----~~g~~~~~~~~k~g~~~~li~~vv~~~~ 551 (562)
|.||..+.-+-..+++.+.++ +|+|.... |..+ +-+|.+|..++.+++..++.-++
T Consensus 459 gl~~~l~~Aaq~~Gg~~g~mI----sp~~i~~a~a~~g~~g-~Eg~ilr~t~~~~l~~~~i~g~~ 518 (522)
T PF02652_consen 459 GLPPLLIAAAQNVGGAMGNMI----SPQNIVAAAAAVGLSG-KEGEILRKTLPPSLIYALIVGLL 518 (522)
T ss_pred CCCHHHHHHHHHHHHHHHhcc----CHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988777776777665444 45554432 2222 36889999999888766555443
|
; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport |
| >PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=1e-06 Score=92.38 Aligned_cols=163 Identities=11% Similarity=0.071 Sum_probs=123.8
Q ss_pred CCCchHHHHHHHHHHHHH-hcCCChHHHHhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHH
Q 008538 378 LNVDPVTAAILGLSILLV-TGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFG 456 (562)
Q Consensus 378 ~~i~~~~vali~~~ll~l-~g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~ 456 (562)
-|+..+..+-+|..++.+ +|.. + .+.||++++++.+.+..+++++++|..|++.+.+.+..+.++. ...+
T Consensus 20 ggig~g~~gg~g~~il~~~~~~~-p-----~~~p~~vil~Ilav~~~~a~Lq~TGgld~lv~~~~k~lrk~pk--~i~l- 90 (443)
T PRK12489 20 GGIGLGLLGGIGLVILVFVFGLP-P-----GKPPVDVMLIILAVVTASATLQAAGGLDVMLQIAERLLRRNPK--YITI- 90 (443)
T ss_pred hhhHHHHHHHHHHHHHHHHcCCC-C-----CCCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccChh--HHHH-
Confidence 356666777777776664 3432 1 4589999999999999999999999999999999987655432 2222
Q ss_pred HHHHHHHHHHHHhchhHH-HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchh---eecC----CCc
Q 008538 457 ILILLYFYSHYFFASGAA-HIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPV---FYGA----NYV 528 (562)
Q Consensus 457 il~~~~~l~~~~~~sn~a-~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i---~~~~----g~~ 528 (562)
+...+..++ .|++|++ .+..++|++.++++..|++|.-......+++..+...+|++...|.+ ..+. .++
T Consensus 91 lap~vt~l~--afl~~Tg~~v~~~lPVi~~vA~k~gi~PsrpLa~as~As~lGi~aSpin~~v~~l~~~l~~~~~~~~g~ 168 (443)
T PRK12489 91 LAPFVTYTL--TFLCGTGHVVYSILPIIYDVALKNGIRPERPMAAASVASQMGITASPVSAAVVSLVAMLGNVTGEGRHI 168 (443)
T ss_pred HHHHHHHHH--HHhCCcHHHHHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCCc
Confidence 333333332 4778997 59999999999999999999887777777777777788988777655 2221 458
Q ss_pred CHHHHHHHhHHHHHHHHHHHHHH
Q 008538 529 PLAKWWGYGFIVSIVNIIIWLGV 551 (562)
Q Consensus 529 ~~~~~~k~g~~~~li~~vv~~~~ 551 (562)
++.|+...++|.+++..+...+.
T Consensus 169 ~~f~il~VgIP~~~ig~l~~~l~ 191 (443)
T PRK12489 169 TLLDILAVTIPATLIGVLAAALW 191 (443)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988886554
|
|
| >PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-05 Score=83.15 Aligned_cols=345 Identities=15% Similarity=0.129 Sum_probs=174.5
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhH-hHHHHHHHcCCCCCCCcch
Q 008538 181 AFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLP-IVKSLCLACGSNTGDGTEH 259 (562)
Q Consensus 181 ~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~P-i~~~i~~~~g~~~~~~~~~ 259 (562)
..+.+.++.++...+|+-+++.+.- ++++.......+++.+.+.+=-.-.. +... +..+++|+.+ +-+ .
T Consensus 67 ilvtG~~lA~sp~v~r~l~~lA~~p-~t~~~Ai~lv~~vs~i~s~inWG~gL----V~gallArelarr~~-~vd---Y- 136 (453)
T PF02667_consen 67 ILVTGYALASSPPVKRLLDRLASLP-KTPRQAIVLVALVSMIASWINWGFGL----VVGALLARELARRVK-GVD---Y- 136 (453)
T ss_pred HHHHHHHHhCChHHHHHHHHHHhcC-CCCcceeeHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHhcc-CCc---H-
Confidence 3445888999999999999998764 56666555566665555544222211 1222 2345665543 111 1
Q ss_pred hhhHHHHHHHHHHhhhhhcccccccchhHHH--HHHHhhhcC-------CCccHHHHHHHHhHHHHHHHHHHHHHHHHHc
Q 008538 260 KLGSWLMLTCFQTSVISSSMFLTAMAANPLS--ATLTLNTIN-------QPIGWMDWAKAAIVPGLVSLIVVPLLLYIIY 330 (562)
Q Consensus 260 ~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~--~g~l~~~~g-------~~is~~~~~~~~~~~~li~~~~~~~~~~~~~ 330 (562)
.++.+.+|.....--..+-|+.+=.++ -..+++..| .+++-.-|--..+.+.++.++...++.+...
T Consensus 137 ----pllvAaaY~g~~vWh~GlSgS~pL~~At~g~~l~~~~~~~~~~~vIP~seTif~~~nli~~~~~~v~~pli~~~m~ 212 (453)
T PF02667_consen 137 ----PLLVAAAYSGFVVWHGGLSGSAPLLVATPGHFLEKIIGGLVITGVIPTSETIFSPYNLIIVVVLLVVLPLINYLMA 212 (453)
T ss_pred ----HHHHHHHHHHHHHHhccccchhHHHhcCCCCcHHHHhcccccCCccCcchhhcchHHHHHHHHHHHHHHHHHHHhC
Confidence 122233333221110112222211111 001122112 2333333333444455555555556666666
Q ss_pred CCCCCCCCChhHHHHHH------HHhcCCCChhHHH----HH-HHHHHHHHHHHhc-----CC-CCCchHHHHHHHHHHH
Q 008538 331 PPTVKSSPDAPKLAQEK------LEKMGPMSTNEKI----MA-GTLLLTVGLWVFG-----GR-LNVDPVTAAILGLSIL 393 (562)
Q Consensus 331 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~e~~----~l-~i~~~~i~l~i~~-----~~-~~i~~~~vali~~~ll 393 (562)
|++++..+-+++..+++ .++.++.++.||. .+ .+..+..+.++.. .. .+++..-..++...++
T Consensus 213 P~~~~~~~i~~~~~~~~~~~~~~~~~~~~~tpae~le~S~~l~~lig~~g~~yl~~~f~~~G~~L~LN~vnfiFL~lGll 292 (453)
T PF02667_consen 213 PKPEEAVEIDPELLAEEEEEEEKIPSPERATPAERLENSRILSLLIGLLGLAYLVYYFATKGFSLNLNIVNFIFLFLGLL 292 (453)
T ss_pred CCCcCceecChhhccccccccccccCCCcCCHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 55432111111111111 1111234455543 22 2222222222221 11 2233222222222222
Q ss_pred HHhcCCChHHHHhccCC--hhHHH---HHHHHHHHHHHHHHhC-----HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 008538 394 LVTGVVTWKECLAESVA--WDTLT---WFAALIAMAGYLNKYG-----LITWFSQTVVKFVGGLGLSWQLSFGILILLYF 463 (562)
Q Consensus 394 ~l~g~~~~~~~~~~~i~--w~~ll---~~~~~~~l~~~l~~tG-----~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~ 463 (562)
+--...+..+++++.++ +++++ +.+|.+. .++.+| +.+.+++++.+...... ++ ++..+...
T Consensus 293 Lh~tP~~y~~a~~~a~~~~~gIllQFPfYAGImG---mm~~sgl~g~sLa~~is~~fvsiat~~T--fP---~~~flsag 364 (453)
T PF02667_consen 293 LHGTPRRYLRAVKEAVRSAAGILLQFPFYAGIMG---MMTGSGLGGVSLAQVISNFFVSIATPTT--FP---LFTFLSAG 364 (453)
T ss_pred HcCCHHHHHHHHHHHhccccceeeechHHHHHHH---HHhhcCCCcchHHHHHHHHHHHhcCCcc--HH---HHHHHHHH
Confidence 21112223344444444 34443 5666554 455566 56689999888754322 12 23334444
Q ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHH
Q 008538 464 YSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIV 543 (562)
Q Consensus 464 l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li 543 (562)
+...+++|.-+.-++=.|++.+.++.+|+|+....++++++....+++-|+=.-| ..+-.+++.||...+.+...++
T Consensus 365 ivn~FVPSGGGqWaVqgP~~~~Aa~~Lgv~~~~~~ma~a~Gda~tNmiQPFWaLP---lL~I~GL~aRDImGy~~~~ll~ 441 (453)
T PF02667_consen 365 IVNFFVPSGGGQWAVQGPIVMPAAQALGVDLGKTVMAYAWGDAWTNMIQPFWALP---LLGIAGLKARDIMGYCVVILLV 441 (453)
T ss_pred HheeEecCCCceEEEecchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHcCCcHHHHHHHHHHHHHH
Confidence 5566788988888899999999999999999999999999988744444543222 2345578999999999888877
Q ss_pred HHHHHHH
Q 008538 544 NIIIWLG 550 (562)
Q Consensus 544 ~~vv~~~ 550 (562)
..++...
T Consensus 442 ~~~i~~~ 448 (453)
T PF02667_consen 442 SGIIVSL 448 (453)
T ss_pred HHHHHHH
Confidence 6666544
|
|
| >COG4666 TRAP-type uncharacterized transport system, fused permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-06 Score=92.88 Aligned_cols=329 Identities=17% Similarity=0.122 Sum_probs=169.7
Q ss_pred HHHHHHHH-HHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCC
Q 008538 176 WLIALAFF-FARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTG 254 (562)
Q Consensus 176 ~~~~g~~~-l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~ 254 (562)
+-+...|+ +++.++|+|..|++.+......|+++.+-.=.-.+.+++....-++..+-+ ..-....++++||.|++++
T Consensus 189 ~~~IflFilFga~l~~~G~g~~fid~a~a~~G~~~GGpak~aVv~Sgl~G~isGSsvAN~-vttG~fTIPlMkR~Gy~~~ 267 (642)
T COG4666 189 WTFIFLFILFGAFLVKSGAGQFFIDLAFALAGLRRGGPAKVAVVSSGLMGMISGSSVANT-VTTGSFTIPLMKRAGYPPE 267 (642)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCCCcceeeecchhheecchhhhhh-hhcceeeHHHHHhcCCChh
Confidence 34444454 478899999999999998888776554333333333334433333333322 1234455666899999986
Q ss_pred CCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCC
Q 008538 255 DGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTV 334 (562)
Q Consensus 255 ~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~ 334 (562)
..-++=.+++.||-..|.=-+....++ .+. .++++.|-.+.++.|+++.+.......++--+|+.
T Consensus 268 ----------~AgAvEaaAS~GGQimPPiMGAAAFiM---ae~--~gipY~~ii~aA~iPAllyy~~v~~~V~~eA~k~~ 332 (642)
T COG4666 268 ----------FAGAVEAAASTGGQLMPPVMGAAAFIM---AEY--LGIPYTEIILAAFIPALLYYFGVILMVHLEAKKDG 332 (642)
T ss_pred ----------cccceehhhhcCCchhhhhHHHHHHHH---HHH--hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 111232345556655432111111111 222 46899999999999999877666655554444332
Q ss_pred CCCCChhHHHHHHHHhcCCCCh--hHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH------HHHhc---CCC---
Q 008538 335 KSSPDAPKLAQEKLEKMGPMST--NEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSI------LLVTG---VVT--- 400 (562)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~--~e~~~l~i~~~~i~l~i~~~~~~i~~~~vali~~~l------l~l~g---~~~--- 400 (562)
.+ ..+ ++ ++++..+ +++.-..+-++.++...... .++.-.+..+.++ ...++ .+.
T Consensus 333 ~~--gl~---~~---~lp~~~~~l~~~~~~llPl~~LI~~L~~~---~sp~~aa~~s~Il~~~~~~~~~~~k~~~~g~~~ 401 (642)
T COG4666 333 LP--GLP---RE---QLPPLRPTLKEGWYYLLPLVLLIWLLGVG---YSPGRAALLSSILITALVLRALFRKDTRMGKIL 401 (642)
T ss_pred CC--CCC---hh---hCCchHHHHHhhhHHHHHHHHHHHHHHcC---cCHHHHHHHHHHHHHHHHHHHHhcccccchhhH
Confidence 22 111 11 1333222 22222222222222222222 2333333333111 11121 111
Q ss_pred hHHH---Hhcc--CChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHH
Q 008538 401 WKEC---LAES--VAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAH 475 (562)
Q Consensus 401 ~~~~---~~~~--i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~ 475 (562)
.+|. +++. ..-++....++...+.+.++-||+...+++.+.+.-+++ ....+++..+..++..+=+..++.
T Consensus 402 ~~~l~~aLe~gar~~i~v~ia~A~aGIIvGvitlTGlg~~~s~~l~~l~~g~----l~l~L~lt~~~siiLGMGlPttan 477 (642)
T COG4666 402 ARDLLEALESGARNVIPVAIACATAGIIVGVVTLTGLGLKLSSLLLDLAGGN----LLLLLVLTMVISIILGMGLPTTAN 477 (642)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHhhcceeeeEeecCchHHHHHHHHHHhccc----HHHHHHHHHHHHHHhcCCCCCccH
Confidence 1222 2111 113445555566667777899999999999999876553 222222222333333333446667
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHH
Q 008538 476 IGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFI 539 (562)
Q Consensus 476 ~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~ 539 (562)
..+...++.|.-...|++++...+-+=+-.-+ +.+||. ....++....+.-.|.+|.|+-
T Consensus 478 YIi~atl~aP~l~~~gv~~laaH~FVFYfGi~-AdiTPP---VaLaAfAaA~IA~~dp~kTg~~ 537 (642)
T COG4666 478 YIITATLAAPALIELGVPLLAAHFFVFYFGIM-ADITPP---VALAAFAAAGIAGADPVKTGFT 537 (642)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH-ccCCCh---HHHHHHHHhhhcCCCcHHHHHH
Confidence 77777788888888999998766654443333 555663 3344444333444444444443
|
|
| >PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.3e-06 Score=73.98 Aligned_cols=129 Identities=16% Similarity=0.158 Sum_probs=95.9
Q ss_pred hcCCCCCchHHHHHHHHHHHH-HhcCCChHHHHhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhH
Q 008538 374 FGGRLNVDPVTAAILGLSILL-VTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQ 452 (562)
Q Consensus 374 ~~~~~~i~~~~vali~~~ll~-l~g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~ 452 (562)
.+.+.+++.+..++..+.++. +..-++.||++ +..|++..+.+.|.--+-+..+++|-.|+++++..+..++++. .
T Consensus 17 ig~~~kiNiGllAi~~A~vig~~~~g~~~~~ii-~gfP~~lf~~l~GVt~lf~iA~~NGTle~la~~~v~~~~~r~~--l 93 (149)
T PF07158_consen 17 IGFVRKINIGLLAIAFAFVIGTFLAGMSDKEII-AGFPTSLFITLVGVTLLFGIAQVNGTLELLAKKAVRLVGGRPA--L 93 (149)
T ss_pred HHHccccchHHHHHHHHHHHHHHHcCCCHHHHH-hhCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCce--e
Confidence 344556888888888876665 34567889987 8999999999999888888999999999999999999887643 1
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 008538 453 LSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSN 506 (562)
Q Consensus 453 ~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~ 506 (562)
.. .+++.+..+....=..+.++.+++.|+..+++++.|.||....+....+++
T Consensus 94 iP-~v~f~~~~~lsa~G~g~~~~~Ai~aPia~~lA~~~gi~p~l~~~~v~~Ga~ 146 (149)
T PF07158_consen 94 IP-WVMFLLAAVLSAIGAGSIAAVAIMAPIAMSLARRTGINPLLMALIVVCGAQ 146 (149)
T ss_pred hH-HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccc
Confidence 22 233333333322223355778899999999999999999887776665544
|
The MatC protein is an integral membrane protein that could function as a malonate carrier []. |
| >TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.6e-06 Score=88.88 Aligned_cols=163 Identities=11% Similarity=0.002 Sum_probs=119.8
Q ss_pred CCCchHHHHHHHHHHHHHhcCCChHHHHhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHH
Q 008538 378 LNVDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGI 457 (562)
Q Consensus 378 ~~i~~~~vali~~~ll~l~g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~i 457 (562)
-|+..+..+-++..++.+.-.+++ +++|+++++++.+.....+.+++||..|+..+.+.+..++++. ...+.+
T Consensus 16 gg~~~g~~g~~g~~~~~~~~~~~~-----~~~~~~vI~~il~vgg~~~vl~~TGaid~~v~~~~k~~~~~~~--~~~lli 88 (430)
T TIGR00770 16 GGIGLGYAGGLGVLILCFGFGLKP-----GKIPFDVILIIMAVIAAIAAMQAAGGLDYLVQIAEKLLRRNPK--YITILA 88 (430)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCcc--hhhhhH
Confidence 356666677777776665322332 4589999999999999999999999999999988887766432 112222
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecC---CCcCHHHHH
Q 008538 458 LILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGA---NYVPLAKWW 534 (562)
Q Consensus 458 l~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~---g~~~~~~~~ 534 (562)
.++.+ ..+.+.+|...+..+.|+..++++.+|.||........++++.+...+|++.+++.+ .+. .+++++|++
T Consensus 89 -pii~~-lfs~~~g~~~~~l~f~PI~i~la~~lG~d~i~~~ai~~~aa~iG~~as~in~~~~~~-ig~~~~~Gi~f~~~l 165 (430)
T TIGR00770 89 -PSVTY-FLTILAGTGHVVYSTLPVIAEVAKEQGIKPERPLSLAVVSSQIAITASPVSAAVVFM-SAILEPLGIEYLDLL 165 (430)
T ss_pred -HHHHH-HHHHHhchHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhhcccHHHHHH-HHHHHhCCCCHHHHH
Confidence 22222 223456787888899999999999999999877777788888878888997654443 332 368999999
Q ss_pred HHhHHHHHHHHHHHHH
Q 008538 535 GYGFIVSIVNIIIWLG 550 (562)
Q Consensus 535 k~g~~~~li~~vv~~~ 550 (562)
....|..++..++...
T Consensus 166 ~~rip~~~v~l~v~~~ 181 (430)
T TIGR00770 166 MVTIPSTFLGCMLTAF 181 (430)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999987766444
|
These proteins are members of th C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most proteins in this family have 12 GES predicted transmembrane regions; however one member has 10 experimentally determined transmembrane regions with both the N- and C-termini localized to the periplasm. The two Escherichia coli proteins, DcuA and DcuB, transport aspartate, malate, fumarate and succinate, and function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively. |
| >PRK10420 L-lactate permease; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00072 Score=73.44 Aligned_cols=129 Identities=9% Similarity=0.005 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHc
Q 008538 411 WDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASAL 490 (562)
Q Consensus 411 w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~ 490 (562)
+...+-+...++++..+.++|....+++.+.. .++. ++..--++. .+-.+.-.||+..-.++.++=...|+++
T Consensus 406 ~~~~iti~~~vala~vm~~SGm~~~la~~~A~-~G~~---yp~~aP~lG---~lG~FvTGS~TsSN~LF~~lQ~~tA~~l 478 (551)
T PRK10420 406 ALPIYSIGMVLAFAFISNYSGLSSTLALALAH-TGHA---FTFFSPFLG---WLGVFLTGSDTSSNALFAALQATAAQQI 478 (551)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH-hCcc---HHHHHHHHH---hhhcccccccHHHHHHHHHHHHHHHHHc
Confidence 56778888899999999999999999998873 4432 121111111 1222335688888899999988999999
Q ss_pred CCChHHHHHHHHHHHhhhhcccccccccchhe----ecCCCcCHHHHHHHhHHHHHHHHHHHHHH
Q 008538 491 GCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVF----YGANYVPLAKWWGYGFIVSIVNIIIWLGV 551 (562)
Q Consensus 491 Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~----~~~g~~~~~~~~k~g~~~~li~~vv~~~~ 551 (562)
|+||.++.-+-..+++.+.++ +|+|... .|..+ +-+|.+|..++.+++..++..++
T Consensus 479 gl~~~li~Aaq~~Gg~~GkmI----spq~I~~a~a~vg~~G-~Eg~ilr~t~~~~l~~~~~~gi~ 538 (551)
T PRK10420 479 GVSDVLLVAANTTGGVTGKMI----SPQSIAIACAAVGLVG-KESDLFRFTVKHSLIFTCMVGVI 538 (551)
T ss_pred CCCHHHHHHHHHHhhHHhhcc----CHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988877777777765444 4555433 23222 45777777777666555444333
|
|
| >COG1906 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00019 Score=70.13 Aligned_cols=361 Identities=12% Similarity=0.136 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHhc--CCCC-HHHHH-hhc---CCCHHHHHHHHHHHHHHHHHhCHHHHHHHH
Q 008538 128 AIFLATIVGIIAQPLPLGAVALLGLGASVLT--KTLT-FSAAF-SAF---GDPIPWLIALAFFFARGFIKTGLGNRIAYQ 200 (562)
Q Consensus 128 ~i~~~~i~lw~~~~i~~~~~all~~~~l~~~--g~~~-~~~v~-~~~---~~~~i~~~~g~~~l~~~l~~tGl~~~la~~ 200 (562)
..|...+++... +++.++.-+.+...+.++ |.-. .+..+ +-. .|..+..+...+.++..+++.|-.++..+.
T Consensus 9 ~lF~v~vvli~~-kvnigiSif~Gal~lall~Lg~~g~l~~~~~s~~s~st~~lIviv~fim~l~~~me~~G~l~k~~~g 87 (388)
T COG1906 9 SLFTVVVVLIWL-KVNIGISIFLGALTLALLSLGIRGILLSLYLSVSSWSTWRLIVIVIFIMGLGYVMEQIGYLEKVEEG 87 (388)
T ss_pred HHHHHHHHHHhh-hhchhhhHHHHHHHHHHHhcCcchhHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhH
Confidence 334444444332 666666555555544333 4332 22222 223 345666777788889999999999999999
Q ss_pred HHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhccc
Q 008538 201 FVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMF 280 (562)
Q Consensus 201 l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t 280 (562)
+...++++... .+-...+++- ....+. +-.|+.-+.+++.|.+|++ +.+-.+-+=++.- ...
T Consensus 88 ll~lfpk~s~~---~iPalIGLmP----MPgGAl--iSApmi~p~~~k~~l~pe~---kt~iNYwfRHiwe------~~W 149 (388)
T COG1906 88 LLHLFPKHSLW---TIPALIGLMP----MPGGAL--ISAPMIEPLAKKFGLNPEK---KTFINYWFRHIWE------LFW 149 (388)
T ss_pred HHHhcchhHHH---HHHHHHcCcC----CCCcce--EeeeeccccchhccCCHHH---HHHHHHHHHHHHH------Hhc
Confidence 99888654322 2222233333 222222 4567777778888888762 1111122222211 112
Q ss_pred ccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHhcCCCChhHHH
Q 008538 281 LTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNEKI 360 (562)
Q Consensus 281 ~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 360 (562)
|. -|..++.+. . .+++.+|.-...+|.+++....+++.. -++.+++....+ ..++.+.+. ..
T Consensus 150 Pl--yqaVvi~sa---v--~gvs~~~vs~~~fP~~iia~t~G~lff---~~~l~~~~~~~r-nl~~~l~nl-------yP 211 (388)
T COG1906 150 PL--YQAVVITSA---V--LGVSIREVSVKMFPLTIIALTIGYLFF---NGPLKERLSKSR-NLRDLLINL-------YP 211 (388)
T ss_pred cc--hHHHHHHHH---H--hcCcHHHHHHHHhHHHHHHHHHHHHHh---cccchhhhhcCC-CHHHHHHHH-------hh
Confidence 32 344444321 1 357888988999999888776664322 111111110000 001111111 11
Q ss_pred HHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH---hcCCChHHHHhccCChhHHHHHHHHHHHHHHHHHhCHHHHHH
Q 008538 361 MAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLV---TGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFS 437 (562)
Q Consensus 361 ~l~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~l---~g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~~~la 437 (562)
...+.+..++ .+++.......+.....+ .++-+.+|.+++..+-.+++++.+.+.+...++++|+.+.++
T Consensus 212 i~~vl~lsvl-------l~Ldll~gs~~~~ls~~i~n~~r~~~l~e~lkrafnprI~~lliavmvfk~vIe~SGl~e~~a 284 (388)
T COG1906 212 IAIVLVLSVL-------LGLDLLYGSFVAFLSISIPNVFRIRYLLEVLKRAFNPRIVLLLIAVMVFKEVIEHSGLVEIFA 284 (388)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHhccHHHHHH
Confidence 1111121111 123332222222222222 333335677767777668888899999999999999999766
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcc-ccccc
Q 008538 438 QTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGL-THYGI 516 (562)
Q Consensus 438 ~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~-tp~~~ 516 (562)
+.... .+.+ ...+.+. .+++...-.-..+.+.+..|...|..+. .+-.. ++++.+..|.+ +|..
T Consensus 285 e~~l~----f~aP-~al~l~~---~fiiGlaTGI~fayvsiafPlL~pff~g--~~~la----lay~ggy~GvmlSPvH- 349 (388)
T COG1906 285 EIMLS----FHAP-VALFLLL---TFIIGLATGIEFAYVSIAFPLLMPFFTG--FKKLA----LAYAGGYMGVMLSPVH- 349 (388)
T ss_pred HHHhc----cchh-hHHHHHH---HHHHHHhhhhHHHHHHHhhhhhHHHhcc--chHHH----HHHHhhhhheecchhh-
Confidence 65442 2221 2222222 1222111111234556667877776543 33322 33333333433 3432
Q ss_pred ccchheecCCCcCHHHHHHHhHHHHHHHHHH
Q 008538 517 GSAPVFYGANYVPLAKWWGYGFIVSIVNIII 547 (562)
Q Consensus 517 ~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv 547 (562)
-.-..-..+-+.+.+|.+|-..-...+....
T Consensus 350 lClVlsaeyy~~ei~kvyrklllpavlt~~l 380 (388)
T COG1906 350 LCLVLSAEYYKAEIGKVYRKLLLPAVLTFAL 380 (388)
T ss_pred hhhheeHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 2222212233456677776666555444433
|
|
| >TIGR00795 lctP L-lactate transport | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00026 Score=76.73 Aligned_cols=130 Identities=12% Similarity=0.030 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHc
Q 008538 411 WDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASAL 490 (562)
Q Consensus 411 w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~ 490 (562)
|...+-....+++++.+.++|..+.+++.+.+ .++. ++..--.+. .+-.+.-.||+..-.++.++=...|++.
T Consensus 392 ~~~~lt~~~~~~~a~vm~~sGm~~~la~~~A~-~G~~---yp~~aP~iG---~lG~FiTGS~TsSN~LFg~lQ~~tA~~l 464 (530)
T TIGR00795 392 RLPILTIGMVLAFANVSNYSGMSKTLALALAH-TGLA---FTFFSPFLG---WLGVFLTGSDTSSNLLFGSLQLLTAEQI 464 (530)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-hCCc---hHHHHHHHH---hhhcccccchHHHHHHHHHHHHHHHHHc
Confidence 55666777778899999999999999999998 6542 121111111 1222335688888889999988999999
Q ss_pred CCChHHHHHHHHHHHhhhhcccccccccchhe----ecCCCcCHHHHHHHhHHHHHHHHHHHHHHH
Q 008538 491 GCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVF----YGANYVPLAKWWGYGFIVSIVNIIIWLGVG 552 (562)
Q Consensus 491 Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~----~~~g~~~~~~~~k~g~~~~li~~vv~~~~~ 552 (562)
|+||.++.-+-..+++.+.++ +|.|... .|..+ +-.|.+|..++.+++..++.-++.
T Consensus 465 Gl~~~li~A~q~~Gg~~G~mI----sp~~I~~a~a~vg~~G-~Eg~ilr~t~~~~l~~~i~~gv~~ 525 (530)
T TIGR00795 465 GLPETLLLAANTVGGVMGKMI----SPQSIAIACAAVGLVG-QESDLFRKTVKYSLIYAIIVGVVA 525 (530)
T ss_pred CCCHHHHHHHHHHhHHHhhcc----CHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHHHH
Confidence 999988877777777765444 4555443 23333 568888888888777665544433
|
The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS. |
| >PRK09695 glycolate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00044 Score=75.19 Aligned_cols=126 Identities=10% Similarity=-0.017 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHc
Q 008538 411 WDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASAL 490 (562)
Q Consensus 411 w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~ 490 (562)
|...+-+...++++..+..+|..+.+++.+. ..++. ++..--++. .+-.+.-.||+..-.++.++=...|+++
T Consensus 414 ~~~~lti~~~vala~vm~~SGm~~~La~~~a-~~G~~---yp~~aP~iG---~lG~FvTGS~TsSN~LF~~lQ~~tA~~l 486 (560)
T PRK09695 414 KWPILSIGMVLAFAFVTNYSGMSTTLALVLA-GTGVM---FPFFSPFLG---WLGVFLTGSDTSSNALFGSLQSTTAQQI 486 (560)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHH-HhCcc---HHHHHHHHh---hhhcccccccHHHHHHHHHHHHHHHHHc
Confidence 6667888889999999999999999999996 34432 121111111 1222335688888889999888899999
Q ss_pred CCChHHHHHHHHHHHhhhhcccccccccchhe----ecCCCcCHHHHHHHhHHHHHHHHHHH
Q 008538 491 GCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVF----YGANYVPLAKWWGYGFIVSIVNIIIW 548 (562)
Q Consensus 491 Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~----~~~g~~~~~~~~k~g~~~~li~~vv~ 548 (562)
|+||.++.-+-..++..+.++ +|+|... .|..+ +-.|.+|..++.+++..++.
T Consensus 487 Gl~~~li~Aaq~~Gg~~GkmI----spq~I~~a~a~vgl~G-~Eg~ilr~t~~~~l~~~~i~ 543 (560)
T PRK09695 487 NVSDTLLVAANTSGGVTGKMI----SPQSIAVACAATGMVG-RESELFRYTVKHSLIFASVI 543 (560)
T ss_pred CCCHHHHHHHHHHhhHHhhcc----CHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHH
Confidence 999988877777777765444 4555543 22222 44667776666666544443
|
|
| >COG1620 LldP L-lactate permease [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00095 Score=70.29 Aligned_cols=156 Identities=13% Similarity=0.013 Sum_probs=99.1
Q ss_pred HHHHHHHhcCCChHHHHh---cc--CChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 008538 389 GLSILLVTGVVTWKECLA---ES--VAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYF 463 (562)
Q Consensus 389 ~~~ll~l~g~~~~~~~~~---~~--i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~ 463 (562)
.+.+..+....+++|..+ +. --|..++-++..+.++..+.++|....+++.+.+. ++. ++..--.+. .
T Consensus 352 a~iIs~~i~~~~~~~~~~~~~~t~k~~~~p~lti~~~l~~~~l~~~SG~~~tla~~~A~~-G~~---fp~fSp~lG---w 424 (522)
T COG1620 352 AALISILLLKIKPKDAVTAFKETLKELKLPILTIIFALAMAYLMNYSGLSKTLALALAHT-GEA---FPLFSPFLG---W 424 (522)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHhc-CCC---chhHhHHHH---H
Confidence 333333334566665431 11 12677888899999999999999999999999876 432 111111111 1
Q ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchhe-ecC-CCc-CHHHHHHHhHHH
Q 008538 464 YSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVF-YGA-NYV-PLAKWWGYGFIV 540 (562)
Q Consensus 464 l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~-~~~-g~~-~~~~~~k~g~~~ 540 (562)
+-.+.-.||+..-.++-|+=...|++.|.||.....+-..+..++.+ -+++|..+ +.. |.+ +-.|.+|..++.
T Consensus 425 iG~FltGS~T~sN~lFg~lQ~~~A~~iG~s~~l~~AantvGg~~gkM----IspqsIa~acaavg~~gkEg~l~r~tv~~ 500 (522)
T COG1620 425 IGVFLTGSNTSSNLLFGPLQQTTAEQIGLSPVLLVAANTVGGVMGKM----ISPQSIAAACAAVGLVGKEGDLLRKTVKP 500 (522)
T ss_pred HhhhhcccchHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhhhhccc----cCHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 12223568888888999999999999999998876666666555333 35566543 222 221 457788888887
Q ss_pred HHHHHHHHHHHHHHH
Q 008538 541 SIVNIIIWLGVGGVW 555 (562)
Q Consensus 541 ~li~~vv~~~~~~~~ 555 (562)
+++..++..++.+..
T Consensus 501 sl~~~~~~~i~~~l~ 515 (522)
T COG1620 501 SLIYLIIAGVITLLL 515 (522)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777666655554443
|
|
| >PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.4e-05 Score=78.68 Aligned_cols=154 Identities=21% Similarity=0.242 Sum_probs=112.9
Q ss_pred CCCCHHHHHhhcCC----------CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccC
Q 008538 159 KTLTFSAAFSAFGD----------PIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIP 228 (562)
Q Consensus 159 g~~~~~~v~~~~~~----------~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~ 228 (562)
+..++||+++.... +++.++.+...+++.++.+|+.+.+.+.+.+. +.++..+.+.+.++..+.+....
T Consensus 288 r~~~~k~v~~~l~~~~~GMg~~~a~Vv~liiaAgvfs~gL~~~Gl~~~l~~~l~~l-g~~~~~illv~~il~~l~~~~~G 366 (455)
T PRK10654 288 RSFNTKKVFSGLEVAYRGMADAFAGVVMLLVAAGVFAQGLSTIGFIQSLISLATSF-GSAGIILMLVLVILTMLAAITTG 366 (455)
T ss_pred hCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHHcc
Confidence 56788887544333 58888899999999999999999999988876 55666666666677777777775
Q ss_pred chhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHH
Q 008538 229 SVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWA 308 (562)
Q Consensus 229 ~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~ 308 (562)
+..+.. ..+.|+..+++.+.|.||. .+...+..+++.|....|++ .+.++..- -.+++..|..
T Consensus 367 Sg~a~~-~af~pi~~pia~~lG~~pv---------~~~~~~~~~~~~G~~~sPvs--~~ii~~ag-----~a~~~~~~iv 429 (455)
T PRK10654 367 SGNAPF-YAFVELIPKLAHSSGINPA---------YLTIPMLQASNLGRTISPVS--GVVVAVAG-----MAKISPFEVV 429 (455)
T ss_pred chHHHH-HHHHHHHHHHHHHcCCCHH---------HHHHHHHHHHHHhCcCCcch--hhHhhhhc-----ccCCCHHHHH
Confidence 555554 3799999999999999985 45555666777777666663 23333221 1357999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHc
Q 008538 309 KAAIVPGLVSLIVVPLLLYIIY 330 (562)
Q Consensus 309 ~~~~~~~li~~~~~~~~~~~~~ 330 (562)
|+..++.+++.++.......++
T Consensus 430 Krt~ip~ii~~iv~~i~~~~~~ 451 (455)
T PRK10654 430 KRTSVPVLVGLLIVIVATEIMV 451 (455)
T ss_pred HhhhHHHHHHHHHHHHHHHHHh
Confidence 9988888887777766655555
|
|
| >PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00041 Score=68.26 Aligned_cols=42 Identities=17% Similarity=0.293 Sum_probs=35.0
Q ss_pred hcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHH
Q 008538 509 GGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLG 550 (562)
Q Consensus 509 ~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~ 550 (562)
|-++-.|+-||.+..|.-+++.|||.|.|.|+.++..++..+
T Consensus 301 GGMlIPGNIPNIIsAgkL~I~skEWar~gvPlGl~~m~~yfi 342 (347)
T PF07854_consen 301 GGMLIPGNIPNIISAGKLKITSKEWARLGVPLGLVLMVVYFI 342 (347)
T ss_pred CCeecCCCcchhhccccCccchHHHHHHcccHHHHHHHHHHH
Confidence 334566899999999988999999999999999987776544
|
|
| >TIGR00791 gntP gluconate transporter | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00031 Score=75.15 Aligned_cols=161 Identities=10% Similarity=0.074 Sum_probs=106.1
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCChHHHH---hccC---ChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCch
Q 008538 377 RLNVDPVTAAILGLSILLVTGVVTWKECL---AESV---AWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLS 450 (562)
Q Consensus 377 ~~~i~~~~vali~~~ll~l~g~~~~~~~~---~~~i---~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~ 450 (562)
..++++.+..++++++..+...++..|.. .+.. -++..+.++.+..++..++++|..|++++.+.+.++.....
T Consensus 19 ~~k~~~~ial~~~a~~~~l~~g~~~~~~~~~i~~g~g~~~~~iglii~lg~~~g~~m~~sGaa~~ia~~i~~~~g~~r~~ 98 (440)
T TIGR00791 19 KFKLNTFVALLVVSFGVGLASGMPLDKVVHSIEAGIGGTLGFLALIVGLGAMLGKLLADSGAAQRIALTLLAKFGKSRVQ 98 (440)
T ss_pred HHcccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcccchH
Confidence 34577777777777776665444444332 2222 27777888888889999999999999999999998876432
Q ss_pred hHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCH
Q 008538 451 WQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPL 530 (562)
Q Consensus 451 ~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~ 530 (562)
..++.....+....|. .. ...++.|++.+++++.|.++.....+...+........|...+++ .+.+.-+.+.
T Consensus 99 ----~a~~~~~~ilgi~~f~-~~-~~vil~Pi~~~l~~~~g~s~~~~a~~~~~~~~~~~~~vPp~Pg~~-~~a~~~g~~~ 171 (440)
T TIGR00791 99 ----WAVVIAGLIVGLALFF-EV-GFVLLIPLVFSIAAEAKISLLKLGIPMVAALSVAHGFLPPHPGPT-AIANEYGADI 171 (440)
T ss_pred ----HHHHHHHHHHhhHHHH-HH-HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhceeCCCCccHH-HHHHHhCCCH
Confidence 1222111111111122 11 366899999999999999998876666555443333446554444 3344456789
Q ss_pred HHHHHHhHHHHHHH
Q 008538 531 AKWWGYGFIVSIVN 544 (562)
Q Consensus 531 ~~~~k~g~~~~li~ 544 (562)
.++..+|++..+..
T Consensus 172 ~~~~~~gl~~~i~~ 185 (440)
T TIGR00791 172 GEVLLYGLIVAIPT 185 (440)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999977765
|
This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. |
| >PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0012 Score=66.98 Aligned_cols=106 Identities=17% Similarity=0.162 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcC
Q 008538 412 DTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALG 491 (562)
Q Consensus 412 ~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~G 491 (562)
+++.++..+.++++.++++|..+.+.+.+.+...+. ........++..+......++..+..+..|++.++++..|
T Consensus 162 ~~i~i~ila~~l~~i~~~~G~~~~~v~~~~~~~~~~----~~l~~~~~l~~~~~~~~tgs~~~ti~i~~pi~~~l~~~~g 237 (303)
T PF03553_consen 162 PTIIILILAGALGGILEKTGVLDALVNKLLKKIKSP----RSLPAVTFLLSIIISFATGSSWGTIAIMGPIFKPLAEKMG 237 (303)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCc----cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 456666778889999999998888888887765332 1222333333444444567888899999999999999999
Q ss_pred CChHHHHHHHHHHHhhhhcccccccccchh
Q 008538 492 CPPYFVAMVLAFFSNLMGGLTHYGIGSAPV 521 (562)
Q Consensus 492 v~p~~~~~~~~~~~~~~~~~tp~~~~~n~i 521 (562)
.||....-++.-++.++..+.|.+......
T Consensus 238 ~~~~~~a~ai~~~~~~g~~l~P~s~~~i~~ 267 (303)
T PF03553_consen 238 ISPPLLAGAIESGATFGDPLSPWSDTTILS 267 (303)
T ss_pred ccHHHHHHHHHhhhhhcCCCCcchHHHHHH
Confidence 999888888777777778888988765544
|
It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane |
| >TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0017 Score=69.43 Aligned_cols=150 Identities=10% Similarity=0.001 Sum_probs=104.9
Q ss_pred hcCCChHHHHhccCC-----hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhc
Q 008538 396 TGVVTWKECLAESVA-----WDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFA 470 (562)
Q Consensus 396 ~g~~~~~~~~~~~i~-----w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~ 470 (562)
....+++|..+.-++ ...++.+.-...+.+....+|..+.+.+.-.+..+ + .......+++..+......
T Consensus 47 ~~~~~~~~~~~~~~~g~~~~~~~i~il~~~G~~~~~~~~~g~i~~l~~~g~~~i~---p--~~~~~~~Fl~~~~~s~~~G 121 (454)
T TIGR00931 47 YLGVGYNDLESAIIDGIKIGIKAILILALVGILIGTWIMGGTVPTLIYYGLSIIS---P--EWFAVSTLLICMIVSSFTG 121 (454)
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHhhcC---H--HHHHHHHHHHHHHHHHHhc
Confidence 344677765422111 23333333334456788889998888776555532 2 3334445555555566778
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHH
Q 008538 471 SGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLG 550 (562)
Q Consensus 471 sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~ 550 (562)
|..++...+.|++.+++..+|+||...+-++.-++.+|..+.|.++.+|.... ..+.+..|.+|...|.++...++..+
T Consensus 122 ss~gt~~~~g~~l~~i~~~~g~~~~~~agai~sGa~fGD~~sP~Sdtt~l~a~-~~~~~~~~~v~~~~~~~~~a~~i~~v 200 (454)
T TIGR00931 122 TSWGTVGTIGVAMMGIGTGLGIDLAIAAGAVVCGAYFGDKLSPLSDTTNFASG-IVGVDLFDHIRHLLYTTVPSFVITAI 200 (454)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCCCCcHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999988777777777778899999988886543 44579999999999988888777655
Q ss_pred H
Q 008538 551 V 551 (562)
Q Consensus 551 ~ 551 (562)
.
T Consensus 201 ~ 201 (454)
T TIGR00931 201 L 201 (454)
T ss_pred H
Confidence 4
|
A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterized.It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria. |
| >PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00093 Score=70.65 Aligned_cols=171 Identities=19% Similarity=0.152 Sum_probs=111.3
Q ss_pred CCCchHHHHHHHHHHHHHhcCCChHHHHhccCC-------hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCch
Q 008538 378 LNVDPVTAAILGLSILLVTGVVTWKECLAESVA-------WDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLS 450 (562)
Q Consensus 378 ~~i~~~~vali~~~ll~l~g~~~~~~~~~~~i~-------w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~ 450 (562)
.++++...-+++++...+..-++.+|.. +.+. -+.-+.++-+-.+|..++++|..|.+++.+.+.++.+..+
T Consensus 20 ~klhpF~aLl~~al~~gl~~G~~~~~i~-~~i~~GfG~tl~~igivI~lG~~iG~~l~~SGaa~~IA~~l~~~~G~k~~~ 98 (441)
T PF02447_consen 20 FKLHPFLALLIVALIVGLLAGMPPEEIV-KSITKGFGSTLGSIGIVIALGAMIGKLLEESGAAERIANTLLKKFGEKRAP 98 (441)
T ss_pred HhhhHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCccc
Confidence 3466665556666666666667777654 3332 2233444555667899999999999999999999887553
Q ss_pred hHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCH
Q 008538 451 WQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPL 530 (562)
Q Consensus 451 ~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~ 530 (562)
+. ..+...+..+ -.|.+ ....++.|++..+++..|.+...+.+++..+......+.|. +|.-..+.+.-+.+.
T Consensus 99 ~A--~~i~g~iv~I--PvF~d--v~~viL~Pl~~~la~~~~~s~~~~~~~l~~gl~~~h~lvPP-tPgpla~a~~lg~dl 171 (441)
T PF02447_consen 99 LA--LAITGFIVGI--PVFFD--VGFVILAPLAFSLARKTGKSLLYLALPLAAGLSVTHALVPP-TPGPLAAAGALGADL 171 (441)
T ss_pred HH--HHHHHHHhhh--HHHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCC-CCcHHHHHHHhCCCh
Confidence 22 1221111112 22433 45689999999999999999988888877776554445554 333333344456799
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 008538 531 AKWWGYGFIVSIVNIIIWLGVGGVWWKFI 559 (562)
Q Consensus 531 ~~~~k~g~~~~li~~vv~~~~~~~~w~~~ 559 (562)
.+++-+|++..+...++ ..+.|.|+.
T Consensus 172 G~~il~Gl~vaip~~~i---ag~~~~~~~ 197 (441)
T PF02447_consen 172 GLVILYGLIVAIPAMLI---AGPLYGRFI 197 (441)
T ss_pred hHHHHHhHHHHHHHHHH---HHHHHHHHh
Confidence 99999999988776655 234454443
|
Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane |
| >TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0017 Score=69.34 Aligned_cols=149 Identities=15% Similarity=0.056 Sum_probs=104.6
Q ss_pred CCHHHHHhhcCC------CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHh---CCCchhHHHHHHHHhhhhhcccCchh
Q 008538 161 LTFSAAFSAFGD------PIPWLIALAFFFARGFIKTGLGNRIAYQFVKLF---GSSSLGLGYSLVFSEALLAPAIPSVS 231 (562)
Q Consensus 161 ~~~~~v~~~~~~------~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~---g~~~~~~~~~l~~~~~~ls~~~~~~~ 231 (562)
.+.+|+.+.+.. +..+++...--+...++++++.+.++.+..... +-+.......+.++..++..|++|..
T Consensus 329 k~~~di~~~m~~g~~~m~~~~vli~~A~~f~~~f~~s~i~~~ia~~~A~~L~~~~l~~~~~~i~~~l~~~~iNlfI~S~S 408 (513)
T TIGR00819 329 RGEADLPHAMAEPMKELAGFIVIIFFAAQFVAFFNWSNIGKFIAVGGADFLEESGLAGIPAFIGFALICAFICLFIASAS 408 (513)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHheeccHH
Confidence 567776644432 222222222233477999999999999987665 44556677788999999999999999
Q ss_pred hhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchh---HHHHHHHhhhcCCCccHHHHH
Q 008538 232 ARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAAN---PLSATLTLNTINQPIGWMDWA 308 (562)
Q Consensus 232 a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n---~i~~g~l~~~~g~~is~~~~~ 308 (562)
+.. +++.|++.++++..|++|+ ....+--++-+.....+ |.+ +++.+++++. ..+.+.+...
T Consensus 409 gkw-al~aPI~vPm~~~lGisp~---------~t~~AyriGDs~tNiIt----P~~~y~~lil~~~~~y-~k~~g~Gtl~ 473 (513)
T TIGR00819 409 AIW-AILAPIFVPMFMLAGFAPA---------FAQAAFRIADSSTLIIA----PMMPFFGLFLAFLMKY-KKDAGLGTLI 473 (513)
T ss_pred HHH-HHHHHHHHHHHHHcCCCHH---------HHHHHHHHhchHHHhhc----cCcchHHHHHHHHHHh-ccCCcHHHHH
Confidence 998 5899999999999999886 22222223333333344 444 6667787776 6788999999
Q ss_pred HHHhHHHHHHHHHHHH
Q 008538 309 KAAIVPGLVSLIVVPL 324 (562)
Q Consensus 309 ~~~~~~~li~~~~~~~ 324 (562)
..++|.++..++....
T Consensus 474 s~mlPysi~~l~~w~~ 489 (513)
T TIGR00819 474 SLMLPYPAFFLIAWIA 489 (513)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999876655443
|
The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid. |
| >PRK10034 fructuronate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.002 Score=68.21 Aligned_cols=161 Identities=9% Similarity=0.062 Sum_probs=108.4
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCChHHHHh---c---cCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCch
Q 008538 377 RLNVDPVTAAILGLSILLVTGVVTWKECLA---E---SVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLS 450 (562)
Q Consensus 377 ~~~i~~~~vali~~~ll~l~g~~~~~~~~~---~---~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~ 450 (562)
..++++....++++++..+...++.+|..+ + +.-++..+.++.+..++..++++|..+.+++.+.+.+++....
T Consensus 22 k~k~~~fialli~al~~gl~~Gm~~~~~~~~i~~G~g~~~~si~lii~lGailG~lLe~SGaa~~Ia~~i~~~~G~kr~~ 101 (447)
T PRK10034 22 KFKINSMVALLVAALSVGMLAGMDLMKLLHTMKAGFGNTLGELAIIVVFGAVIGKLMVDSGAAHQIAHTLLARLGLRYVQ 101 (447)
T ss_pred HhCccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhCccchH
Confidence 346777777777887777766666665431 1 1224455566666678999999999999999999999876442
Q ss_pred hHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcC
Q 008538 451 WQLSFGILILLYFYS-HYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVP 529 (562)
Q Consensus 451 ~~~~~~il~~~~~l~-~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~ 529 (562)
+ .+. +..++. ...| -+....++.|++.++++..+.++....+++..+......+.|.. |.-..+.+.-+.+
T Consensus 102 ~----a~~-l~g~llGi~vF--~dv~~v~laPi~~~lak~~~~s~~~~~~~l~~gl~~~h~lvPP~-Pgpla~a~~l~a~ 173 (447)
T PRK10034 102 L----SVI-IIGLIFGLAMF--YEVAFIMLAPLVIVIAAEAKIPFLKLAIPAVAAATTAHSLFPPQ-PGPVALVNAYGAD 173 (447)
T ss_pred H----HHH-HHHHHHhhHHH--HHhHHHhhHHHHHHHHHHhCcCHHHHHHHHHHHHHHhhcccCCC-CcHHHHHHHhCCc
Confidence 1 111 111111 1112 22455678999999999999999988888777766655555553 3333334455778
Q ss_pred HHHHHHHhHHHHHHHH
Q 008538 530 LAKWWGYGFIVSIVNI 545 (562)
Q Consensus 530 ~~~~~k~g~~~~li~~ 545 (562)
..+.+-+|.+..+...
T Consensus 174 lG~~il~Gl~v~ip~~ 189 (447)
T PRK10034 174 MGMVYIYGVLVTIPSV 189 (447)
T ss_pred HHHHHHHhhHHHHHHH
Confidence 9999999988777663
|
|
| >PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.002 Score=68.62 Aligned_cols=129 Identities=17% Similarity=0.131 Sum_probs=93.9
Q ss_pred HHHHHHhCHHHHHHHHHHHHh---CCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhh
Q 008538 185 ARGFIKTGLGNRIAYQFVKLF---GSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKL 261 (562)
Q Consensus 185 ~~~l~~tGl~~~la~~l~~~~---g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~ 261 (562)
-..++.+++.+.++.+..... +-+.......+.+++.++..|++|..+.. +++.|++.++....|++|+
T Consensus 357 ia~F~~snlG~ilav~gA~~L~~~~l~~~pl~i~~ill~a~iNlfI~SgSakw-ai~aPIfVPm~~llGisPe------- 428 (508)
T PRK11339 357 VAMFNWSNMGKFIAVGLTDILESSGLSGIPAFVGLALLSSFLCMFIASGSAIW-SILAPIFVPMFMLLGFHPA------- 428 (508)
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHccccHHHHH-HHHHHHHHHHHHHcCCCHH-------
Confidence 356778999998888776653 44556667889999999999999999998 5899999999999999986
Q ss_pred hHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHH
Q 008538 262 GSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLL 325 (562)
Q Consensus 262 ~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~ 325 (562)
..-++-=++-+.....+|.. +--+++.+++++. ..+.+++.|++.++|.++..++.....
T Consensus 429 --~tq~AyRiGDs~TNiItPl~-~y~~lil~~~~~y-~k~~g~Gtlis~mlPysi~~lv~w~~l 488 (508)
T PRK11339 429 --FAQILFRIADSSVLPLAPVS-PFVPLFLGFLQRY-KPDAKLGTYYSLVLPYPLIFLVVWLLM 488 (508)
T ss_pred --HHHHHHHHccchhhhcCCch-HHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHHHHHHH
Confidence 22222223334444455552 2234557777765 568999999999999998866654433
|
|
| >PRK11588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0014 Score=69.73 Aligned_cols=149 Identities=13% Similarity=0.098 Sum_probs=95.6
Q ss_pred CCCCHHHHHhhcCCCHHHHHHHHH------HHHHHH-----HHhCHHHHHHHHHHHHhCC-CchhHHHHHHHHhhhhhcc
Q 008538 159 KTLTFSAAFSAFGDPIPWLIALAF------FFARGF-----IKTGLGNRIAYQFVKLFGS-SSLGLGYSLVFSEALLAPA 226 (562)
Q Consensus 159 g~~~~~~v~~~~~~~~i~~~~g~~------~l~~~l-----~~tGl~~~la~~l~~~~g~-~~~~~~~~l~~~~~~ls~~ 226 (562)
|.++++|..+.+....==+..+.+ .+...+ ++....+.+.+...+..++ ++......++++..+++.|
T Consensus 335 ~g~~~~~i~~~f~~Ga~~m~~~aliig~A~~i~~il~~g~~~~g~iidTIv~~~~~~L~~lp~~~~ai~m~i~~~~lNff 414 (506)
T PRK11588 335 NGMTVNTMASSFTEGARMMLAPALLVGFAKGILLLLGGGEPGDPSVLNTILNSAGGAISGLPDAVSAWFMLLFQSVFNFF 414 (506)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHeE
Confidence 456888876555432211111111 123446 4445788888877776655 4445666778888999999
Q ss_pred cCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHH
Q 008538 227 IPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMD 306 (562)
Q Consensus 227 ~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~ 306 (562)
++|....+ ++.+|++.++++..|.++. ...++--++-+.....+|. +....+.+.- .+++|.+
T Consensus 415 IpSgSGqA-aitmPIm~Plad~lGisrq---------~avlAfq~GDg~tNlI~Pt----s~~lm~~Lai---a~Ipy~k 477 (506)
T PRK11588 415 VTSGSGQA-ALTMPLMAPLADLVGVNRQ---------VAVLAFQLGDGFTNIIYPT----SASLMATLGV---CRVDFGN 477 (506)
T ss_pred ecChHHHH-HHHHHHHHHHHHHcCCCHH---------HHHHHHHHHhHHHHHhhhh----HHHHHHHHHH---hCCCHHH
Confidence 99999998 5899999999999999865 2222333444444444443 3333333322 3699999
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 008538 307 WAKAAIVPGLVSLIVVPL 324 (562)
Q Consensus 307 ~~~~~~~~~li~~~~~~~ 324 (562)
|+|...|+-++.+++...
T Consensus 478 W~Kf~~pl~~i~~v~~~v 495 (506)
T PRK11588 478 WLKFIWRFLLLLFIMSSV 495 (506)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999998765554443
|
|
| >PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0088 Score=61.03 Aligned_cols=305 Identities=12% Similarity=0.079 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHc-CCCCCCCcchhhhHHHHHHHHH
Q 008538 193 LGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLAC-GSNTGDGTEHKLGSWLMLTCFQ 271 (562)
Q Consensus 193 l~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~-g~~~~~~~~~~~~~~l~~~~~~ 271 (562)
+.++..+.+.+.-++++....+.++.+.=++++|+....+.. +..+.+ .++. ..++. +|+ ++.-+++.+
T Consensus 119 ~a~~~v~~iArlp~~s~~a~~~~~L~~~PLlGSfITEpaAMT---laAllL--~~~~f~~~~s----~~l-kYaTLGvLF 188 (438)
T PF07399_consen 119 FAERLVRFIARLPKPSPVAWWWLILTLVPLLGSFITEPAAMT---LAALLL--RDQFFRLGPS----PRL-KYATLGVLF 188 (438)
T ss_pred HHHHHHHHHHhCCCCCchhHHHHHHHHHHhhhhhhccHHHHH---HHHHHH--HHHhccCCCC----HHH-HHHHHHHHh
Confidence 555666666552234666666677777778888887766543 232222 2322 22221 122 344455544
Q ss_pred -HhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHH--HHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHHH
Q 008538 272 -TSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWA--KAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKL 348 (562)
Q Consensus 272 -~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~--~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (562)
=.++||..|.+..||=+++++ +++|..++ ..-..-+.+.+++....++.++||+.++.++.++. ..
T Consensus 189 vNISIGGtLT~fAAPPVLMVA~--------~w~Wd~~fM~~~FGWKAaiai~ina~~~~~~fRkel~~l~~~~~~---~~ 257 (438)
T PF07399_consen 189 VNISIGGTLTSFAAPPVLMVAS--------TWGWDSAFMLTHFGWKAAIAILINATVYTLLFRKELARLPKTAQA---TT 257 (438)
T ss_pred eEeeecccccccccCcceeEec--------ccCCChHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhccccccc---cc
Confidence 345689899998888666653 23333332 22234455666666667777888776544332111 00
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhcCCChHHHHhccCChhHHHHHHHHHHHHHHHH
Q 008538 349 EKMGPMSTNEKIMAGTLLLTVGLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLN 428 (562)
Q Consensus 349 ~~~~~~~~~e~~~l~i~~~~i~l~i~~~~~~i~~~~vali~~~ll~l~g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~ 428 (562)
++.++ -.+....+=++. ++.+.- .|+ + +.++|++.++..|..+.-+-.|+.+...--+++ ++-+++...
T Consensus 258 ~~~~~---vP~~v~~vHl~f-~g~V~~-ahh-p---~iF~G~lfLfFLGf~~ay~~yQ~~l~Lre~lLV--gFFLaGLVv 326 (438)
T PF07399_consen 258 SSEER---VPWWVILVHLLF-VGVVVF-AHH-P---VIFMGALFLFFLGFTQAYKRYQSPLILREALLV--GFFLAGLVV 326 (438)
T ss_pred cccCC---CCHHHHHHHHHH-HHHHHH-hcC-h---HHHHHHHHHHHHHHHHHHHhhccchhhhHHHHH--HHHHhhHHH
Confidence 00011 111111111111 111221 122 2 335664444444432222222333433333332 222445556
Q ss_pred HhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhh
Q 008538 429 KYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLM 508 (562)
Q Consensus 429 ~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~ 508 (562)
..|..+| |+++.+++.++ . ........ .+.+.||.+.+.+-. ..-|.+... =.++..++-.+
T Consensus 327 lGglQ~W---Wlqpll~~m~~--~---~lf~ga~~--LTa~tDNAalTYLgs-------lv~g~sd~~-kYalVAGAVtG 388 (438)
T PF07399_consen 327 LGGLQQW---WLQPLLSGMSP--L---ALFFGATA--LTAFTDNAALTYLGS-------LVPGLSDAF-KYALVAGAVTG 388 (438)
T ss_pred cCchHHH---HHHHHHhcCCh--h---HHHHHHHH--HHHHhhhHHHHHHHH-------hccCCCHHH-HHHHHhheecc
Confidence 6788888 45566666543 1 12222222 245888887664322 122444322 22333444557
Q ss_pred hcccccccccchheec-------CCCcCHHHHHHHhHHHHHHHHHH
Q 008538 509 GGLTHYGIGSAPVFYG-------ANYVPLAKWWGYGFIVSIVNIII 547 (562)
Q Consensus 509 ~~~tp~~~~~n~i~~~-------~g~~~~~~~~k~g~~~~li~~vv 547 (562)
|-+|-++++||..-+. .+.++....+...++.+++....
T Consensus 389 GGLTVIANAPNpaG~aiLr~~F~d~~Is~~~L~l~AL~PT~ia~~~ 434 (438)
T PF07399_consen 389 GGLTVIANAPNPAGQAILRKHFPDGSISPLGLFLAALPPTLIAALA 434 (438)
T ss_pred CceeEeccCCChhhHHHHhccCCCCCcChHHHHHHHHhHHHHHHHH
Confidence 8899999999986543 24588888888888888776654
|
The function of this family is unknown. |
| >TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00061 Score=71.39 Aligned_cols=128 Identities=16% Similarity=0.082 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCc-hhhhhhhhhhHhHHHHHHHcC
Q 008538 172 DPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPS-VSARAGGIFLPIVKSLCLACG 250 (562)
Q Consensus 172 ~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~-~~a~~~~i~~Pi~~~i~~~~g 250 (562)
..++.++.+...++..++.+|..+.+++.+... +.++....+...+...+++.++++ ++... .+.|+..+++++.|
T Consensus 258 ~~v~~iI~aA~vF~~~L~~~Gi~~~l~~~l~~~-~~~~~~~ll~~~l~~~~lg~~~~s~~a~~~--~~~PIl~pia~~~G 334 (388)
T TIGR00771 258 ANVVGLIVAASVFAAGLKTIGAVDAAISFAKES-GLGNIFVMWGATIGPFLMALITGSGNAPFI--AFNTAIPPHAVELG 334 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHhcCcHHHHH--HHHHHHHHHHHHcC
Confidence 357788888999999999999999999999876 556777777777777889999965 55443 79999999999999
Q ss_pred CCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHH-HHHHhhhcCCCccHHHHHHHHhHHHHHHH
Q 008538 251 SNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLS-ATLTLNTINQPIGWMDWAKAAIVPGLVSL 319 (562)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~-~g~l~~~~g~~is~~~~~~~~~~~~li~~ 319 (562)
+||. .+......+..+|....|.| .|..+ .+. .+++..|..|..+||.++++
T Consensus 335 idpv---------~~gi~~~i~~~iG~~tpPv~--~~l~v~~gi------a~v~~~~i~k~~~~p~~~~~ 387 (388)
T TIGR00771 335 YTHV---------NLGMPMAIAGALGRTASPIA--GVVVVCAGL------AMVSPFEVVKRTAPPMIVGV 387 (388)
T ss_pred CCHH---------HHHHHHHHHHHHhCcCCcHH--HHHHHHHhh------cCCCHHHHHHHHHHHHHHhc
Confidence 9985 33334445566666666664 34444 332 25789999999999987653
|
catalyzing fumarate-succinate exchange and fumarate uptake. |
| >COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0058 Score=62.49 Aligned_cols=149 Identities=16% Similarity=0.111 Sum_probs=105.7
Q ss_pred cCCCCHHHHHh------hcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchh
Q 008538 158 TKTLTFSAAFS------AFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVS 231 (562)
Q Consensus 158 ~g~~~~~~v~~------~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~ 231 (562)
.+..++++..+ +....+.+.+.+.-.++..++..++-+.+++++.... .++..+++.+.+...++..|+|..+
T Consensus 210 Yr~l~~~~l~~~l~~a~~~t~~Vm~iva~a~~f~~~lt~~~vp~~la~~~~~~~-~~~~~~ll~inl~llvvG~fmd~~a 288 (379)
T COG1593 210 YRELTLKELPKVLLEAVKTTAVVMFIVAAAAAFAWLLTVEQVPQQLADWLLSLS-DSPLVVLLVINLLLLVVGTFMDLTA 288 (379)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHhccHHH
Confidence 34456665442 2233466667777788999999999999999999764 7888888899999999999999999
Q ss_pred hhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHH
Q 008538 232 ARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAA 311 (562)
Q Consensus 232 a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~ 311 (562)
+.. ++.|+.++++++.|.||- +++ ........+|...-|+|. |+.+..-. + +.+..+..|..
T Consensus 289 ~il--il~Pil~Pi~~~~GIDPv-----hfG----vv~v~Nl~IGliTPPvG~--~Lfv~s~V----~-~~~~~~~~k~i 350 (379)
T COG1593 289 AIL--ILTPILLPIAAALGIDPV-----HFG----VVFVLNLSIGLITPPVGM--VLFVASAV----G-KVPIEAVIKAI 350 (379)
T ss_pred HHH--HHHHHHHHHHHHhCCCce-----eeH----HHHHHHHHhhCCCCCcch--hHHHHHhh----c-CCCHHHHHHHH
Confidence 886 899999999999999986 222 233444556666666763 44443211 2 36777888777
Q ss_pred hHHHHHHHHHHHHH
Q 008538 312 IVPGLVSLIVVPLL 325 (562)
Q Consensus 312 ~~~~li~~~~~~~~ 325 (562)
.|.-+..++...++
T Consensus 351 ~Pfl~~~~~~L~li 364 (379)
T COG1593 351 LPFLVALILVLLLI 364 (379)
T ss_pred HHHHHHHHHHHHHH
Confidence 76655544444333
|
|
| >COG1288 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0018 Score=66.48 Aligned_cols=151 Identities=17% Similarity=0.134 Sum_probs=101.2
Q ss_pred cCCCCHHHHHhhcCCCHHHHHHHHHHHHHH------HHHhCHHHHHHHHHHHHhC-CCchhHHHHHHHHhhhhhcccCch
Q 008538 158 TKTLTFSAAFSAFGDPIPWLIALAFFFARG------FIKTGLGNRIAYQFVKLFG-SSSLGLGYSLVFSEALLAPAIPSV 230 (562)
Q Consensus 158 ~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~------l~~tGl~~~la~~l~~~~g-~~~~~~~~~l~~~~~~ls~~~~~~ 230 (562)
.+.++.+|..+.|....-=++.+.++++-+ +++.-+.|.+-+...+... -+.....+...+...+++.+++|.
T Consensus 317 I~glse~~~~~sF~~Ga~~lv~~aLiiGiARgI~lim~~g~i~dTiL~~~~~~lsgls~~~f~i~mli~~~~l~f~VpS~ 396 (481)
T COG1288 317 IGGLSENDIASSFIEGASDLLGVALIIGLARGINLIMDDGMILDTILNYLASLLSGLSSAVFAIGMLIFQALLNFFVPSG 396 (481)
T ss_pred HhccchhHHHHHHHHhHHHHHHHHHHHHhhhceEEEecCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHheEEEeCC
Confidence 345788888888877766666666666554 6677777777777777654 455566667777788999999998
Q ss_pred hhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHH
Q 008538 231 SARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKA 310 (562)
Q Consensus 231 ~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~ 310 (562)
.-.+ ++-+|+..++++-.|.++. ....+.-.+.......+ |++-+.++.++- .+++|+.|+|+
T Consensus 397 SG~A-~ltMPImAPLaD~vgv~Rq---------vvV~Afq~g~G~~n~I~----PTSg~~ma~La~---~~i~y~~W~Kf 459 (481)
T COG1288 397 SGLA-VLTMPIMAPLADLVGVPRQ---------VVVLAFQLGDGFSNIIA----PTSGLLMATLAM---ARVPYGTWLKF 459 (481)
T ss_pred Cchh-HhhchhhhhhHHhcCCCHH---------Hhhhhhhhcchhhheec----CchHHHHHHHHH---ccCChhHHHHH
Confidence 8887 4789999999999999864 12112222222222222 343333443333 26899999999
Q ss_pred HhHHHHHHHHHHHHH
Q 008538 311 AIVPGLVSLIVVPLL 325 (562)
Q Consensus 311 ~~~~~li~~~~~~~~ 325 (562)
..|+-++..++...+
T Consensus 460 v~pl~~i~~li~~~~ 474 (481)
T COG1288 460 VAPLLGILFLISSVV 474 (481)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999877655555443
|
|
| >PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00064 Score=68.60 Aligned_cols=167 Identities=17% Similarity=0.164 Sum_probs=114.9
Q ss_pred CCCCCchHHHHHHHHHHHHH-hcCCChHHHHhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHH
Q 008538 376 GRLNVDPVTAAILGLSILLV-TGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLS 454 (562)
Q Consensus 376 ~~~~i~~~~vali~~~ll~l-~g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~ 454 (562)
..-|+..+..+.+|..++.+ +|. +. .+.||++++++.+..+-+.+|+.+|-.|++.+..++.+..+|.. ..
T Consensus 14 R~GGiglG~~gg~G~~il~~~fgl---~P---g~~PidVilII~aVi~a~a~lQaaGGlDylV~~Aek~LRk~Pk~--It 85 (364)
T PF03605_consen 14 RLGGIGLGLAGGLGVAILVFGFGL---KP---GSPPIDVILIIMAVITAAAALQAAGGLDYLVQIAEKILRKNPKY--IT 85 (364)
T ss_pred cccchHHHHHHHHHHHHHHHhcCC---CC---CCCCHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHhCCCc--EE
Confidence 34457777777777777655 333 22 45899999999999999999999999999999999999887642 11
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchhe--ecC-CCcCHH
Q 008538 455 FGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVF--YGA-NYVPLA 531 (562)
Q Consensus 455 ~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~--~~~-g~~~~~ 531 (562)
++-=.+.++ .+.+....-++.-+.|++.+++...|+.|.--.-.-.++++.+=..+|++.....+. ... .++++.
T Consensus 86 ~lAP~vt~~--~T~~~GTgh~a~s~lPVI~eVA~~~~IRPeRPls~svvASq~aItaSPiSAA~~~~~~~l~~~~gv~~~ 163 (364)
T PF03605_consen 86 FLAPLVTYL--FTFLAGTGHVAYSLLPVIAEVAKENGIRPERPLSISVVASQIAITASPISAATVAMIAILAPAHGVSLL 163 (364)
T ss_pred EehhHHHHH--HHHHhcccHHHHHhhHHHHHHHHHcCCCCCCchHHHHHHHhcchhcCcHHHHHHHHHHHHccccCCCHH
Confidence 111111111 122333334567889999999999999875333333445555445567765554432 233 569999
Q ss_pred HHHHHhHHHHHHHHHHHHHHH
Q 008538 532 KWWGYGFIVSIVNIIIWLGVG 552 (562)
Q Consensus 532 ~~~k~g~~~~li~~vv~~~~~ 552 (562)
|.+...+|.+++..++..++.
T Consensus 164 ~iL~V~iPat~ig~~~~a~~~ 184 (364)
T PF03605_consen 164 QILAVTIPATLIGVLVAAFVS 184 (364)
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 999999999999888765543
|
Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane |
| >PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0037 Score=65.90 Aligned_cols=148 Identities=14% Similarity=0.045 Sum_probs=106.2
Q ss_pred cCCCCHHHHHhh------cCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchh
Q 008538 158 TKTLTFSAAFSA------FGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVS 231 (562)
Q Consensus 158 ~g~~~~~~v~~~------~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~ 231 (562)
.+.++++|..+. ....+.+.+.+...++..+..+|+-+.+++.+... +.++...++.+.++..++..++|..+
T Consensus 256 yr~l~~~~l~~~l~~t~~~t~~i~~ii~~a~~f~~~lt~~gvp~~i~~~i~~~-~~~~~~~Ll~i~~~~lvlGmfld~~a 334 (425)
T PRK15060 256 YREMTFSTLYHVLINAAKTTSVVMFLVASAQVSAWLITIAELPMMVSDLLQPL-VDSPRLLFIVIMVAIMVVGMVMDLTP 334 (425)
T ss_pred HcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhhhHHH
Confidence 455777775432 33456777788888999999999999999998876 45778888889999999999999999
Q ss_pred hhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHH
Q 008538 232 ARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAA 311 (562)
Q Consensus 232 a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~ 311 (562)
+.. ++.|+..+++++.|+||. . +.........+|...-|. +.|+....- . .+++..|-++..
T Consensus 335 ~il--i~~Pil~Pi~~~~Gidpv-----~----fgii~~~~~~ig~iTPPv--G~~lfv~~~---i--a~~~~~~i~~~~ 396 (425)
T PRK15060 335 TVL--ILTPVLMPLVKEAGIDPI-----Y----FGVMFIINCSIGLITPPV--GNVLNVISG---V--AKLKFDDAVRGV 396 (425)
T ss_pred HHH--HHHHHHHHHHHHcCCChH-----H----HHHHHHHHHHHhCCCCCc--cHHHHHHHH---h--cCCCHHHHHHHH
Confidence 886 899999999999999985 2 222222333344444444 345555321 1 257888999888
Q ss_pred hHHHHHHHHHHHH
Q 008538 312 IVPGLVSLIVVPL 324 (562)
Q Consensus 312 ~~~~li~~~~~~~ 324 (562)
.|..+..++...+
T Consensus 397 ~Pf~~~~~~~l~l 409 (425)
T PRK15060 397 FPYVLVLYSLLVL 409 (425)
T ss_pred HHHHHHHHHHHHH
Confidence 8887665554443
|
|
| >PRK10472 low affinity gluconate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0042 Score=65.75 Aligned_cols=163 Identities=10% Similarity=-0.003 Sum_probs=107.9
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCChHHHHhccC----C--h-hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCc
Q 008538 377 RLNVDPVTAAILGLSILLVTGVVTWKECLAESV----A--W-DTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGL 449 (562)
Q Consensus 377 ~~~i~~~~vali~~~ll~l~g~~~~~~~~~~~i----~--w-~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~ 449 (562)
..++++....++++++..+...++.++.. +.+ . + .....++-+..++..++++|..|.+++.+.+.++....
T Consensus 23 k~kl~~fialli~Alivgl~~Gmp~~~~~-~~i~~G~g~tlg~i~~iI~lGailG~lLe~SGaa~~IA~~i~~~fG~kr~ 101 (445)
T PRK10472 23 KARMHAFVALMVVSMGAGLFSGMPLDKIA-ATMEKGMGGTLGFLAVVVALGAMFGKILHETGAVDQIAVKMLKSFGHSRA 101 (445)
T ss_pred HhCccHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCcccH
Confidence 34677777777788777776666666543 222 2 2 22234444556789999999999999999999887644
Q ss_pred hhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcC
Q 008538 450 SWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVP 529 (562)
Q Consensus 450 ~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~ 529 (562)
. +.+....+.+..-.| -+....++.|+...+++..|.|...+..++..+......+.|. +|.-..+.+.-+.+
T Consensus 102 ~----~A~~l~g~iv~iPvF--~dv~fvil~Pl~~~la~~~~~s~~~~~~~l~~gl~~~H~~vPP-~Pgp~a~a~~l~ad 174 (445)
T PRK10472 102 H----YAIGLAGLICALPLF--FEVAIVLLISVAFSMARHTGTNLVKLVIPLFAGVAAAAAFLLP-GPAPMLLASQMNAD 174 (445)
T ss_pred H----HHHHHHHHHHhhHHH--HhhHHHHhHHHHHHHHHHHCCChHHHHHHHHHHHHhcccccCC-CcHHHHHHHHhCCC
Confidence 2 112111111111123 3446678999999999999999998888887775554555554 33333344555778
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 008538 530 LAKWWGYGFIVSIVNIII 547 (562)
Q Consensus 530 ~~~~~k~g~~~~li~~vv 547 (562)
.++.+-+|+...+...++
T Consensus 175 lG~~il~Glivaip~~~i 192 (445)
T PRK10472 175 FGWMILIGLCAAIPGMII 192 (445)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999887776544
|
|
| >PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0021 Score=69.24 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=86.1
Q ss_pred HHHhCHHHHHHHHHHHHhCC-CchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHH
Q 008538 188 FIKTGLGNRIAYQFVKLFGS-SSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLM 266 (562)
Q Consensus 188 l~~tGl~~~la~~l~~~~g~-~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~ 266 (562)
+++.+..+.+.+.+....++ +.........+...+++.+++|..+.+ ....|++-++++..|.++. ...
T Consensus 338 ~~~~~i~~tI~~~~~~~l~~~~~~~~~~~m~~~~~~~~fli~SGsg~a-~~~mpim~plad~~Gi~~q---------~~v 407 (465)
T PF03606_consen 338 MEGGKIIDTIVHLLSNLLSGLPGVIAAIGMFLIQFLINFLIGSGSGQA-AAFMPIMPPLADLLGITRQ---------TAV 407 (465)
T ss_pred HcCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHeeecCCchHHH-HHHHHhHHHHHHHcCCCHH---------HHH
Confidence 55556666666666655533 444455566777888999999999887 4799999999999999864 455
Q ss_pred HHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHH
Q 008538 267 LTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLL 326 (562)
Q Consensus 267 ~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~ 326 (562)
+..-++.+++...+|+. -...+.++- .++++.+|+|+..|+.++..++.....
T Consensus 408 la~q~g~gl~n~isPts----g~~m~~l~i---a~V~~~~w~K~~~~~~~~~~v~~~v~l 460 (465)
T PF03606_consen 408 LAFQFGDGLGNSISPTS----GVLMAVLGI---AKVSYGKWVKRTWPPMLIWFVLSIVFL 460 (465)
T ss_pred HHHHHHHHHHhhccchH----HHHHHHhhh---cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777663 222222211 368999999999999988777665544
|
Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane |
| >PRK09821 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.006 Score=64.74 Aligned_cols=161 Identities=11% Similarity=-0.006 Sum_probs=102.0
Q ss_pred CCCchHHHHHHHHHHHHHhcCCChHHHHhccCC-------hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCch
Q 008538 378 LNVDPVTAAILGLSILLVTGVVTWKECLAESVA-------WDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLS 450 (562)
Q Consensus 378 ~~i~~~~vali~~~ll~l~g~~~~~~~~~~~i~-------w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~ 450 (562)
.++++....+++.++..+..-++.+|.. +.+. -+..++++.+-.++..++++|..|.+++.+.+.++.++..
T Consensus 24 ~kl~pf~alii~al~~gl~~G~~~~~i~-~~i~~G~g~tl~~~~lii~lGa~~G~~le~SGaa~~Ia~~ii~~~G~k~~~ 102 (454)
T PRK09821 24 AKVQPFVALLLVSLLVALAAGIPAGEVG-KVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFTRKLGDKRTI 102 (454)
T ss_pred hCccHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCchH
Confidence 4577776666677666666656666543 3222 2334455556668899999999999999999999886542
Q ss_pred hHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccc-cccccchheecCCCcC
Q 008538 451 WQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTH-YGIGSAPVFYGANYVP 529 (562)
Q Consensus 451 ~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp-~~~~~n~i~~~~g~~~ 529 (562)
+ .+......+....|. +....++.|++.+++++.|.++..+..++..+.+....+.| -..|.|. .+.-+.+
T Consensus 103 ~----ai~i~~~ilgIpvF~--dv~fvil~Pl~~~l~kk~~~~~~~l~l~~~~~l~~~h~~vPP~Pgp~~~--a~~Lg~d 174 (454)
T PRK09821 103 A----ALTLAAFILGIPVFF--DVGFIILAPIIYGFAKVAKVSPLKFGLPVAGIMLTVHVALPPHPGPVAA--AGLLHAD 174 (454)
T ss_pred H----HHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHcccccCCChHHHHH--HHHhCCC
Confidence 1 111111111111232 35666899999999999999987776665432222233334 3334333 3555678
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 008538 530 LAKWWGYGFIVSIVNIII 547 (562)
Q Consensus 530 ~~~~~k~g~~~~li~~vv 547 (562)
.....-+|+...+...++
T Consensus 175 ~g~~~l~Giivaip~~i~ 192 (454)
T PRK09821 175 IGWLTIIGIAISIPVGIV 192 (454)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999888877554
|
|
| >PRK14984 high-affinity gluconate transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0062 Score=64.28 Aligned_cols=162 Identities=13% Similarity=0.146 Sum_probs=106.0
Q ss_pred CCCchHHHHHHHHHHHHHhcCCChHHHHhccCC-------hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCch
Q 008538 378 LNVDPVTAAILGLSILLVTGVVTWKECLAESVA-------WDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLS 450 (562)
Q Consensus 378 ~~i~~~~vali~~~ll~l~g~~~~~~~~~~~i~-------w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~ 450 (562)
.++++....++++++..+...++.+|.. +.+. -+..+.++.+-.+|..++++|..+.+++.+.+.++.++..
T Consensus 20 ~Kl~pf~alli~a~~~gl~~Gm~~~~~~-~~i~~G~g~~l~si~iii~lGai~G~~l~~SGaA~~IA~~ii~~~G~kr~~ 98 (438)
T PRK14984 20 FKMNGFIALVLVALAVGLMQGMPLDKVI-GSIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHIQ 98 (438)
T ss_pred HHHhHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhCccchH
Confidence 4577777777777777777777777665 3322 2333445555567899999999999999999999876542
Q ss_pred hHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCH
Q 008538 451 WQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPL 530 (562)
Q Consensus 451 ~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~ 530 (562)
+ ...+...+..+. .| -.....++.|+...++++.|.+...+..++..+......+.|. +|.-..+.+.-+.+.
T Consensus 99 ~--a~~l~~~il~ip--vF--~dv~fvil~Pi~~~lak~~~~~~~~~~~~l~~gl~~th~~vPP-~Pgpla~a~~lgadl 171 (438)
T PRK14984 99 W--AVVLTGFTVGFA--LF--YEVGFVLMLPLVFTIAASANIPLLYVGVPMAAALSVTHGFLPP-HPGPTAIATIFNADM 171 (438)
T ss_pred H--HHHHHHHHHhhH--HH--HHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHhCCCC-CCcHHHHHHHhCCCH
Confidence 1 111111111111 12 2234558899999999999999888777776654443334443 343334445557899
Q ss_pred HHHHHHhHHHHHHHHHH
Q 008538 531 AKWWGYGFIVSIVNIII 547 (562)
Q Consensus 531 ~~~~k~g~~~~li~~vv 547 (562)
++++-+|....+...++
T Consensus 172 G~~il~Glivaip~~~i 188 (438)
T PRK14984 172 GKTLLYGTILAIPTVIL 188 (438)
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 99999999888877533
|
|
| >TIGR00529 AF0261 converved hypothetical integral membrane protein | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0052 Score=64.27 Aligned_cols=158 Identities=11% Similarity=0.025 Sum_probs=109.3
Q ss_pred CCchHHHHHHHHHHHHHhcCCChHHHH---h-ccCChhHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHhcCCCchhHH
Q 008538 379 NVDPVTAAILGLSILLVTGVVTWKECL---A-ESVAWDTLTWFAALIAMAGYLNKY-GLITWFSQTVVKFVGGLGLSWQL 453 (562)
Q Consensus 379 ~i~~~~vali~~~ll~l~g~~~~~~~~---~-~~i~w~~ll~~~~~~~l~~~l~~t-G~~~~la~~l~~~~~~~~~~~~~ 453 (562)
++++....+++++++.+...++.+|.. + ...+++.+.++.+...+.+.++++ |..|.+++.+.+.++..+..
T Consensus 20 K~~~~~all~~al~lgl~~G~~~~~i~~~i~~~g~~~~~i~lii~lg~l~g~l~~ssG~~~~ia~~l~~l~g~~~~~--- 96 (387)
T TIGR00529 20 KVNIGLLIFVGVMILALLVRLGLEGFLWTLSLADSFWSLIVTIFIIAFLSGMMEKSFGDLSKFSEGMRTIFSKNSDS--- 96 (387)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCcccHH---
Confidence 366776666677776665556666643 1 134577777776666677788888 99999999999999765421
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHH
Q 008538 454 SFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKW 533 (562)
Q Consensus 454 ~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~ 533 (562)
....++.. .+. .+...++.|++.++++..+.|+.....+...+-...-.+.|. +|.-..+.+.-+.+.+++
T Consensus 97 --~ap~liG~-----lPv-~~g~vilaPlv~~la~~~~~s~~~~~~~~~~~~~v~h~~~Pp-~Pgpi~aa~~l~~~lg~~ 167 (387)
T TIGR00529 97 --FVPALIGL-----MPM-PGGALFSAPMVKNSLKEERINPEKLTVKNYWFRHTWEFFWPI-YPAVVLVSALSGIHPGKV 167 (387)
T ss_pred --HHHHHHHH-----hhH-HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhcCC-CchHHHHHHHhCCCHHHH
Confidence 11111211 111 355667899999999999999998888877776655555565 344444455567899999
Q ss_pred HHHhHHHHHHHHHHH
Q 008538 534 WGYGFIVSIVNIIIW 548 (562)
Q Consensus 534 ~k~g~~~~li~~vv~ 548 (562)
..+|+|..+...+..
T Consensus 168 il~gl~i~i~~~i~G 182 (387)
T TIGR00529 168 SLTLFPVFAIAFFLG 182 (387)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998885553
|
This protein is predicted to have 10 transmembrane regions. Members of this family are found so far in the Archaea (Archaeoglobus fulgidus and Pyrococcus horikoshii) and in a bacterial thermophile, Thermotoga maritima. In Pyrococcus, the gene is located between nadA and nadB, two components of an enzyme involved in de novo synthesis of NAD. By PSI-BLAST, this family shows similarity (but not necessarily homology) to gluconate permease and other transport proteins. |
| >COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0086 Score=62.92 Aligned_cols=159 Identities=14% Similarity=0.068 Sum_probs=99.9
Q ss_pred CCchHHHHHHHHHHHHHhcCCChHHHH---hccCC---hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhH
Q 008538 379 NVDPVTAAILGLSILLVTGVVTWKECL---AESVA---WDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQ 452 (562)
Q Consensus 379 ~i~~~~vali~~~ll~l~g~~~~~~~~---~~~i~---w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~ 452 (562)
++++.....+.+.+..+.+-++..+.. ++++. -.....++-+-.+|..+|++|..+.+++.+.+.++.+...
T Consensus 22 kv~~flal~l~al~~gl~~Gm~~~~i~~~i~~G~ggtlg~i~~Vi~lGam~GkLle~sGaA~~IA~tii~~~G~kr~~-- 99 (442)
T COG2610 22 KVHPFLALLLVALLVGLLGGMPLLKVVGTIMKGFGGTLGSLALVIGLGAMLGKLLEDSGAAESIADTLIRKFGEKRAL-- 99 (442)
T ss_pred hhhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhCcchHH--
Confidence 466666666666665555445555433 22222 1223344445567889999999999999999999886432
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHH
Q 008538 453 LSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAK 532 (562)
Q Consensus 453 ~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~ 532 (562)
..+.+...+..+ -++-.....++.|++.++++..+.+...+..+++.+.....+..|.+.+|-.. .+.-+.+...
T Consensus 100 ~Al~l~g~i~~~----~vF~dv~~v~l~Pia~alak~~~is~~~i~v~la~g~~~~h~~vpP~Pgpia~-a~~~~a~~g~ 174 (442)
T COG2610 100 LALVLAGLILGI----PVFFDVGFVLLIPLAFALAKEAGISLLKIAVPLAAGLSVTHMFVPPHPGPIAA-AGPFGADIGT 174 (442)
T ss_pred HHHHHHHHHHhh----hHHhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcccCCCCCchhhh-hhhcCcchhH
Confidence 112221111111 13345577789999999999999999888888777664445555665444333 2333456777
Q ss_pred HHHHhHHHHHHH
Q 008538 533 WWGYGFIVSIVN 544 (562)
Q Consensus 533 ~~k~g~~~~li~ 544 (562)
..-+|....+..
T Consensus 175 ~il~g~ivaip~ 186 (442)
T COG2610 175 VILYGLIVAIPT 186 (442)
T ss_pred HHHHHHHHHHHH
Confidence 888888777764
|
|
| >PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0071 Score=63.43 Aligned_cols=139 Identities=12% Similarity=0.133 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCC
Q 008538 173 PIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSN 252 (562)
Q Consensus 173 ~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~ 252 (562)
+++-++.+.-.++.+++..|+.|.+.+.... .|.......+.+..+.++.+...+|..+.. ..+.|++-+++.+.|++
T Consensus 315 ~VV~LIVAA~vFa~GL~aiG~Id~Li~~~~~-~g~g~~~~~lv~~~i~~l~a~l~GSGnAaf-fAF~~lvp~iA~~~G~~ 392 (455)
T PRK09804 315 NVVTLVVAGEIFAKGLTTIGTVDAVIRGAEH-SGLGGIGVMIIMALVIAICAIVMGSGNAPF-MSFASLIPNIAAGLHVP 392 (455)
T ss_pred HHHHHHHhHHHHHhHHHHhhHHHHHHHHHHh-CCCchHHHHHHHHHHHHHHHhhhcCchHHH-HHHHHHhHHHHHHcCCC
Confidence 6888888888999999999999999987664 455666667777888888888888888776 35899999999999999
Q ss_pred CCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008538 253 TGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYII 329 (562)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~ 329 (562)
+. .+.+..-.++++|-..+|+... -++.+|. .++|-.|-.|+..+|.++++++..+..+..
T Consensus 393 ~~---------~l~lpmq~as~lgRt~SPVagv-iIavAg~------a~vSP~eiVKRTavPml~g~i~~~i~~~~~ 453 (455)
T PRK09804 393 AV---------VMIMPMHFATTLARAVSPITAV-VVVTSGI------AGVSPFAVVKRTAIPMAVGFVVNMIATITL 453 (455)
T ss_pred HH---------HHHHHHHHHHhhccccCchhhH-Hhhhccc------cCCCHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 86 5666778889999988888432 1222332 478999999999999998887766554433
|
|
| >PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0056 Score=64.95 Aligned_cols=146 Identities=18% Similarity=0.144 Sum_probs=103.4
Q ss_pred cCCCCHHHHHhhc------CCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchh
Q 008538 158 TKTLTFSAAFSAF------GDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVS 231 (562)
Q Consensus 158 ~g~~~~~~v~~~~------~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~ 231 (562)
.+..+++|..+.. .....+.+.+...++..+..+|+.+.+++++.... .++...+....++..++..++|...
T Consensus 256 ~~~~~~~~l~~~l~~~~~~~~~i~~iia~a~~~~~~l~~~g~~~~i~~~i~~l~-~~~~~~l~l~~l~~lilG~~m~~~a 334 (416)
T PF06808_consen 256 YRRLSWKDLWRALVETARTTGMILFIIAAAGIFSWVLTLTGVPQAIAEFILSLS-GSPWLVLLLIMLILLILGMFMDTTA 334 (416)
T ss_pred hcccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcC-cchHHHHHHHHHHHHHHhccccHHH
Confidence 3456666654332 23467777778888999999999999999998765 4457777788888999999999998
Q ss_pred hhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHH-HHHHhhhcCCCccHHHHHHH
Q 008538 232 ARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLS-ATLTLNTINQPIGWMDWAKA 310 (562)
Q Consensus 232 a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~-~g~l~~~~g~~is~~~~~~~ 310 (562)
+.. +..|+..++..+.|+||- ...+...+...+|...-|+ +.|..+ .+. .+.+..+-++.
T Consensus 335 ~~i--i~~pi~~P~~~~~Gidpi---------~~g~~~~~~~~ig~iTPPv--gl~lfva~~i------a~~~~~~i~~~ 395 (416)
T PF06808_consen 335 AII--IVAPILAPIAQALGIDPI---------HFGVFMFYNAEIGLITPPV--GLNLFVAAGI------AGVPMEKIFRG 395 (416)
T ss_pred HHH--HHHHHHHHHHHHhCcchh---------hHHHHHHHHHHhcCCCCCc--cHHHHHHHHH------hCCCHHHHHHH
Confidence 886 799999999999999986 2333444555555544344 345544 332 14677788888
Q ss_pred HhHHHHHHHHHHH
Q 008538 311 AIVPGLVSLIVVP 323 (562)
Q Consensus 311 ~~~~~li~~~~~~ 323 (562)
..|...+......
T Consensus 396 ~~Pf~~~~~~~l~ 408 (416)
T PF06808_consen 396 ILPFIFVLLVALL 408 (416)
T ss_pred HHHHHHHHHHHHH
Confidence 8777665444433
|
In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins. |
| >COG2851 CitM H+/citrate symporter [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0085 Score=60.38 Aligned_cols=168 Identities=18% Similarity=0.127 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCHHHHHhhcC------CCHHHHHHHHHHHHHHHHHhCHHHHHHH
Q 008538 126 LLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFG------DPIPWLIALAFFFARGFIKTGLGNRIAY 199 (562)
Q Consensus 126 ~l~i~~~~i~lw~~~~i~~~~~all~~~~l~~~g~~~~~~v~~~~~------~~~i~~~~g~~~l~~~l~~tGl~~~la~ 199 (562)
=+.+.+..+.+.+.+.+|..+.-+++..+.+..+.-+.||-.+... -....++.+.-++.+.++.||..|.+++
T Consensus 236 N~lLtl~lm~~Lv~gi~p~~~lFmig~~iAL~vNYP~vk~Q~~ri~aha~nal~vvs~i~AAGif~Gil~gtgMvdama~ 315 (433)
T COG2851 236 NLLLTLALMGLLVSGIFPPGVLFMIGFAIALPVNYPNVKEQMERIGAHAGNALMVVSLIFAAGIFLGILSGTGMVDAMAK 315 (433)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHhCCCCHHHHHHHHHHhCcchhHHHHHHHHHHHHhhhhCCCchHHHHHH
Confidence 3445556666667788899988888888888888878777543322 1234444444455589999999999999
Q ss_pred HHHHHhCCCch-hHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhc
Q 008538 200 QFVKLFGSSSL-GLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSS 278 (562)
Q Consensus 200 ~l~~~~g~~~~-~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~ 278 (562)
.+.+.....-. -+..+..+.+.-+..+++|++--. -+.|++.+.+.+.|.+|. ..+.++-+|--
T Consensus 316 si~~vIP~~lgpyl~~ivgl~svP~tf~~snDAyYf--GvlPIv~e~as~yGv~pv-------------~~A~AsiiGq~ 380 (433)
T COG2851 316 SIVSVIPDALGPYLPLIVGLLSVPFTFFMSNDAYYF--GVLPIVAEAASAYGVEPV-------------EIARASIIGQP 380 (433)
T ss_pred HHHHhCcHhhcchHHHHHHHHcCCeEEEecCcchhh--hhHHHHHHHHHHcCCCHH-------------HHHHHHHhCCc
Confidence 99988744322 233455566667788888888664 589999999999999985 44555555555
Q ss_pred cccccc--chhHHHHHHHhhhcCCCccHHHHHHHHhHH
Q 008538 279 MFLTAM--AANPLSATLTLNTINQPIGWMDWAKAAIVP 314 (562)
Q Consensus 279 ~t~iG~--~~n~i~~g~l~~~~g~~is~~~~~~~~~~~ 314 (562)
.+.... |......|. .+++++||-|+.+--
T Consensus 381 vh~lSPlvPat~LlvgL------a~v~~gdh~k~a~~w 412 (433)
T COG2851 381 VHFLSPLVPATYLLVGL------AKVDMGDHQKFALKW 412 (433)
T ss_pred ceeeccchHHHHHHHHh------hcCChhHHHHHHHHH
Confidence 544432 222333444 256777777666543
|
|
| >PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.007 Score=61.44 Aligned_cols=102 Identities=18% Similarity=0.108 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCC
Q 008538 173 PIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSN 252 (562)
Q Consensus 173 ~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~ 252 (562)
+++++++....+++.++++|..+.+.+++.++. ++++.+....++++.+++...++..... .++.|++.+++++.|.+
T Consensus 162 ~~i~i~ila~~l~~i~~~~G~~~~~v~~~~~~~-~~~~~l~~~~~l~~~~~~~~tgs~~~ti-~i~~pi~~~l~~~~g~~ 239 (303)
T PF03553_consen 162 PTIIILILAGALGGILEKTGVLDALVNKLLKKI-KSPRSLPAVTFLLSIIISFATGSSWGTI-AIMGPIFKPLAEKMGIS 239 (303)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhc-CCccHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHhccc
Confidence 577777778888999999999999999999887 6778888888888999998888877776 47999999999999998
Q ss_pred CCCCcchhhhHHHHHHHHHHhhhhhcccccccc
Q 008538 253 TGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMA 285 (562)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~ 285 (562)
+. .+.-.+.-++..+..+.|+++.
T Consensus 240 ~~---------~~a~ai~~~~~~g~~l~P~s~~ 263 (303)
T PF03553_consen 240 PP---------LLAGAIESGATFGDPLSPWSDT 263 (303)
T ss_pred HH---------HHHHHHHhhhhhcCCCCcchHH
Confidence 74 2333344456666777788664
|
It is involved in pH homeostasis and sodium extrusion. Members of the NhaC family are found in both Gram-negative bacteria and Gram-positive bacteria.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane |
| >PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.011 Score=57.85 Aligned_cols=144 Identities=10% Similarity=-0.051 Sum_probs=89.2
Q ss_pred ccCChhHHH-HHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHH--HHHHHHH
Q 008538 407 ESVAWDTLT-WFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHI--GAMFTAF 483 (562)
Q Consensus 407 ~~i~w~~ll-~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~--~il~Pi~ 483 (562)
+.+.|..++ -+. -++|...++.|+.|.+++...+.....+. ..-++...+.+.+.|.++.|.-.+ .+..-|-
T Consensus 158 ~~vG~a~iLPQlL--AaLG~vF~~AGVG~vIa~lv~~viP~g~~---~~~ViaYclGMalFTmIMGNAFAAF~ViTaGIG 232 (308)
T PF06166_consen 158 DQVGWAAILPQLL--AALGAVFTAAGVGDVIASLVSSVIPEGNR---FIGVIAYCLGMALFTMIMGNAFAAFPVITAGIG 232 (308)
T ss_pred HHhhHHHHHHHHH--HHHHHHHHhcCccHHHHHHHHhhcCCCCe---ehhHHHHHHHHHHHHHHHccHHHHhHHHHhccC
Confidence 467777665 222 23567889999999999999988776432 233445555555556677776333 2222233
Q ss_pred HHHH-HHcCCChHHHHHHHHHHHhhhhcccccccccchheecC-CCcCHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 008538 484 LSVA-SALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGA-NYVPLAKWWGYGFIVSIVNIIIWLGVGGVW 555 (562)
Q Consensus 484 ~~~a-~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~-g~~~~~~~~k~g~~~~li~~vv~~~~~~~~ 555 (562)
.|+. .+.|-||......=..+.-|+..+||....-|.+-... +--+-...+|.-.|..++.+++.+...|++
T Consensus 233 iPfvi~~~GgnPaivgAlgM~aGyCGTLmTPMAANFNiVPaALLElkDk~gVIKaQ~p~Al~llvv~I~LMy~l 306 (308)
T PF06166_consen 233 IPFVIAQFGGNPAIVGALGMTAGYCGTLMTPMAANFNIVPAALLELKDKYGVIKAQAPTALVLLVVNIVLMYFL 306 (308)
T ss_pred ceEEEecCCCCHHHHHHHHHhhcchhcccChhhhhcCcchHHHhcCCccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 3332 35589997654333334445567889887777664432 212344567888999999888887766553
|
The function of this family is unclear. |
| >PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.028 Score=59.84 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=103.7
Q ss_pred CCHHHHHhhcC----C--CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHh---CCCchhHHHHHHHHhhhhhcccCchh
Q 008538 161 LTFSAAFSAFG----D--PIPWLIALAFFFARGFIKTGLGNRIAYQFVKLF---GSSSLGLGYSLVFSEALLAPAIPSVS 231 (562)
Q Consensus 161 ~~~~~v~~~~~----~--~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~---g~~~~~~~~~l~~~~~~ls~~~~~~~ 231 (562)
.+.+|+.+... . +.+++.....-+-+.++.|++...++-+-.+.. |-+...++..+.++++++..|+.+..
T Consensus 322 ks~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~~~~~~~l~i~fill~a~iNLfi~S~S 401 (502)
T PF03806_consen 322 KSDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSLGLPGIPLIIGFILLTAFINLFIGSAS 401 (502)
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhcch
Confidence 45667653322 1 333333334445588999999999988765544 55667788889999999999999999
Q ss_pred hhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHH-HHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHH
Q 008538 232 ARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTC-FQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKA 310 (562)
Q Consensus 232 a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~-~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~ 310 (562)
+.- +++.|++.++...+|++|+ +-... =.+-+.....||.- +-=+++.++.++. ..+.+++...-.
T Consensus 402 aKW-ailAPifVPM~m~lg~sP~----------~tQ~aYRigDS~TN~ItPl~-~yf~lil~~~qkY-~k~~giGTlis~ 468 (502)
T PF03806_consen 402 AKW-AILAPIFVPMFMLLGYSPA----------LTQAAYRIGDSSTNIITPLM-PYFPLILGFAQKY-DKKAGIGTLISL 468 (502)
T ss_pred hhH-HHHHhHHHHHHHHcCCCHH----------HHHHHHHhccccccccCccH-HHHHHHHHHHHHh-CcCccHHHHHHH
Confidence 987 5899999999999999986 21111 12222222233331 1113557777765 678999999999
Q ss_pred HhHHHHHHHHHHHHHH
Q 008538 311 AIVPGLVSLIVVPLLL 326 (562)
Q Consensus 311 ~~~~~li~~~~~~~~~ 326 (562)
++|.++..++...+..
T Consensus 469 mlPysi~~lv~w~~ll 484 (502)
T PF03806_consen 469 MLPYSIAFLVVWTLLL 484 (502)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988666654433
|
AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity []. |
| >PRK09921 permease DsdX; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.016 Score=61.76 Aligned_cols=163 Identities=10% Similarity=0.040 Sum_probs=97.6
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCChHHHHh---ccCC--h-hHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCch
Q 008538 377 RLNVDPVTAAILGLSILLVTGVVTWKECLA---ESVA--W-DTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLS 450 (562)
Q Consensus 377 ~~~i~~~~vali~~~ll~l~g~~~~~~~~~---~~i~--w-~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~ 450 (562)
..++++...-+++++.+.+...++.+|..+ +... + .....++-+..++..++++|..+.+++.+.+. +..+..
T Consensus 24 k~k~~~f~aLl~~ai~~gl~~g~~~~~~~~~i~~g~g~t~g~i~~ii~lGai~G~lle~SGaa~~ia~~i~~~-~~~~~~ 102 (445)
T PRK09921 24 KFKFHPFLALLLASFFVGAMMGMGPLEMVNAIESGIGGTLGFLAAVIGLGTILGKMMEVSGAAERIGLTLQRC-RWLSAD 102 (445)
T ss_pred HHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHH-hhhhHH
Confidence 345677666666777777766666665431 2221 1 22334455566789999999999999998654 332221
Q ss_pred hHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCH
Q 008538 451 WQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPL 530 (562)
Q Consensus 451 ~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~ 530 (562)
........+..+. .| -.....++.|++.++++..|.++.....+.+.+......+.|. +|....+.+.-+.+.
T Consensus 103 --~a~~~~gll~~Ip--vF--~~~~~vil~Pl~~~lak~~~~s~~~~~~~~~~~~~~~h~~vPp-~Pg~~~~a~~lg~~l 175 (445)
T PRK09921 103 --VIMVLVGLICGIT--LF--VEVGVVLLIPLAFSIAKKTNTSLLKLAIPLCTALMAVHCVVPP-HPAALFVANKLGADI 175 (445)
T ss_pred --HHHHHHHHHHccc--HH--HHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhHhcCCC-CcHHHHHHHHhCCCH
Confidence 1111111111111 11 1224458899999999999999777666655554433333343 344333355567899
Q ss_pred HHHHHHhHHHHHHHHHH
Q 008538 531 AKWWGYGFIVSIVNIII 547 (562)
Q Consensus 531 ~~~~k~g~~~~li~~vv 547 (562)
.++..+|++..+....+
T Consensus 176 g~~~l~Gl~~~i~~~~i 192 (445)
T PRK09921 176 GSVIVYGLLVGLMASLV 192 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998766544
|
|
| >TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.02 Score=63.31 Aligned_cols=135 Identities=17% Similarity=0.098 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCC
Q 008538 172 DPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGS 251 (562)
Q Consensus 172 ~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~ 251 (562)
..+.+.+.+..+++..+..+|+.+++++.+....++++...+....++..++.+++|.+++.. +..|+..++..+.|.
T Consensus 391 ~~I~~iia~a~i~~~~lt~tGl~~~l~~~i~~l~~~~~~~~Lll~~l~~lilGm~l~~~a~~i--i~~pi~~P~l~~lGi 468 (613)
T TIGR02123 391 VPVAAACAGAGIIIGVVTLTGLGLKISNDLLDLAGGNLFLLLILTMIACIILGMGLPTTANYI--ITATLAAPALIALGV 468 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcccHHHHHH--HHHHHHHHHHHHcCC
Confidence 356777777888899999999999999999987666788888888899999999999988876 899999999999999
Q ss_pred CCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHH
Q 008538 252 NTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPL 324 (562)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~ 324 (562)
||. ..-+...+...+|...-|+ +.|..++.- . .+.+..+-.+...|..+..+++...
T Consensus 469 dpi---------~~~~~v~~~~~ig~iTPPv--gl~lfvaa~---I--a~~~~~~~~~~~~p~~~~~~~~~~l 525 (613)
T TIGR02123 469 PPI---------AAHMFVFYFGILADITPPV--ALAAFAAAG---I--AGADPMKTGFEAFKLALAGYLVPFM 525 (613)
T ss_pred CHH---------HHHHHHHHHHHHHcCCCCc--hHHHHHHHh---h--cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 974 2222333444444433233 234443321 1 1356666667777776665554443
|
In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria. |
| >COG2056 Predicted permease [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.014 Score=58.50 Aligned_cols=134 Identities=18% Similarity=0.141 Sum_probs=90.2
Q ss_pred hccCChhHHHHHHHHHHHhcCCCCHHHHHhhcCCCHHH--HH----HHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhH
Q 008538 139 AQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPW--LI----ALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGL 212 (562)
Q Consensus 139 ~~~i~~~~~all~~~~l~~~g~~~~~~v~~~~~~~~i~--~~----~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~ 212 (562)
++..+ ..++.+...+.+.|+.+|+|.=+-+....-. ++ +..-.+++.+++||-.+.+.+......|+++..-
T Consensus 261 ~~smi--lgal~gliv~~~~gv~~~ke~d~~~~~G~kmMa~IgFVMl~AaGfa~Vi~~TG~V~~LV~s~~~~~g~sK~l~ 338 (444)
T COG2056 261 TDSMI--LGALAGLIVFFLSGVIKWKETDDVFTEGVKMMAFIGFVMLVAAGFAEVINATGAVEELVESSSSIIGQSKLLA 338 (444)
T ss_pred cccch--HHHHHHHHHHHHhcceehhhhHHHHHhhHHHHHHHHHHHHHHhHHHHHHHhccCHHHHHHHHHHHhcccHHHH
Confidence 34444 4477888888999999998865544443222 22 2222346779999999999999999997776666
Q ss_pred HHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhccccccc
Q 008538 213 GYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAM 284 (562)
Q Consensus 213 ~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~ 284 (562)
.....+++.+.++-+++...+. -+...+..++|.+.|++|. .....+..++.+|-...|-.+
T Consensus 339 a~lMlvvGLlITMGIGsSF~TI-PIIA~iyVPLc~~lGFSp~---------ati~liG~AaALGDAGSPASD 400 (444)
T COG2056 339 ALLMLVVGLLITMGIGSSFGTI-PIIAAIYVPLCLKLGFSPL---------ATIALIGTAAALGDAGSPASD 400 (444)
T ss_pred HHHHHHHHHHHhccccccccch-HHHHHHHHhHHHHhCCCHH---------HHHHHHHHHHHhcCCCCCccc
Confidence 6666666777777776666554 2456666777889999986 333345556677766666554
|
|
| >COG2031 AtoE Short chain fatty acids transporter [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.077 Score=54.16 Aligned_cols=117 Identities=18% Similarity=0.147 Sum_probs=83.9
Q ss_pred HHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 008538 425 GYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFF 504 (562)
Q Consensus 425 ~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~ 504 (562)
+.++++|+.+-+++.+.....+.. ++ ++......++...+.|...--++=.|++.+.++.+|.++-...++.+++
T Consensus 324 gim~~~~La~~Is~ffv~Va~~~t--~p---~fafl~sg~vN~fvPSGGgew~ieap~v~~a~~~Lg~~~gk~~~A~~~g 398 (446)
T COG2031 324 GMMVSTGLAQVISEFFVSIANEDT--WP---VFAFLSSGLVNIFVPSGGGEWAIEAPIVSPAAQELGVDLGKKAMAYAWG 398 (446)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCch--HH---HHHHHHhhHhheeccCCCceEEEEeeecchhhHHhCCCHHHHHHHHHHH
Confidence 566778999999999988765532 22 2223333445556778888788888999999999999999999999888
Q ss_pred HhhhhcccccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHH
Q 008538 505 SNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWL 549 (562)
Q Consensus 505 ~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~ 549 (562)
....+.+-|+=.-+ ..+.++.+.+|..-+.++..++..++..
T Consensus 399 dawtNlIqPFwALP---~L~i~Gl~ardI~Gy~~~~Liv~~vv~~ 440 (446)
T COG2031 399 DAWTNLIQPFWALP---ALGIAGLKARDIMGYTFLFLLVVGVVIA 440 (446)
T ss_pred HHHhhhhhHHHHHH---HHHhcCcchhhhcceeHHHHHHHHHHHH
Confidence 76644443432221 2356788999999999998877666543
|
|
| >COG1757 NhaC Na+/H+ antiporter [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.069 Score=57.73 Aligned_cols=126 Identities=15% Similarity=0.027 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCC
Q 008538 174 IPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNT 253 (562)
Q Consensus 174 ~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~ 253 (562)
++..+.....+++.+++.|..+++.+.+.+.. ++.+.+.....+.+.+.++...+..... .++.|++.+++++.+.++
T Consensus 325 ~i~ilila~siggi~~~~G~~~~l~~~~~~~i-~s~~~l~~~~~l~~~~~~~~tg~~~~si-~i~gpia~~i~~~~~~~~ 402 (485)
T COG1757 325 AILILILAWSIGGILEDLGTLEYLLSLLQKFI-KSKGSLPLIIFLLAILVAFATGTSWGSI-IIMGPIAKEIADKLGLHS 402 (485)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHhcC-CCcchhHHHHHHHHHHHHHHhhcceeee-eeeHHHHHHHHHHhCccH
Confidence 66677777888999999999999999998876 4555778888888888888888888776 479999999999998775
Q ss_pred CCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHH
Q 008538 254 GDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPG 315 (562)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~ 315 (562)
+ + +.-.+-.++..+.-+.|+++.. +..++.+ |-..+..+|+.+.+...
T Consensus 403 ~-----~----l~~~l~~gg~~~~~~~Pws~~~-i~~s~~~----~~~v~~~t~lPya~~~~ 450 (485)
T COG1757 403 K-----R----LSRALEAGGTFGDHLSPWSDTT-ILSSTGL----GCIVHVTTQLPYAFYAA 450 (485)
T ss_pred H-----H----HHHHHHhcCeecCCCCCcchhH-HHHHhcc----CCCchhHhhHHHHHHHH
Confidence 3 1 2222334445555567775532 3333321 21356667777776554
|
|
| >PF06149 DUF969: Protein of unknown function (DUF969); InterPro: IPR010374 This is a family of uncharacterised bacterial membrane proteins | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.079 Score=49.44 Aligned_cols=171 Identities=15% Similarity=0.134 Sum_probs=97.2
Q ss_pred HHhcCCCCHHHHHh----hc-CCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccC-
Q 008538 155 SVLTKTLTFSAAFS----AF-GDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIP- 228 (562)
Q Consensus 155 l~~~g~~~~~~v~~----~~-~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~- 228 (562)
-.+.+.+++.|.++ +| ++..+-++.-.+-+-+.+|+.|+=++-.+.+.+.-+-+..+++..-.++=-+.+++--
T Consensus 31 TgLvaG~~~~~iL~~lG~aFv~nR~mslf~l~LPvIGllER~GLke~A~~lI~kik~aT~Gril~~Yl~iR~i~aa~gl~ 110 (218)
T PF06149_consen 31 TGLVAGMSFVEILETLGKAFVDNRYMSLFILTLPVIGLLERYGLKERAANLIGKIKGATAGRILSVYLLIREIAAAFGLT 110 (218)
T ss_pred HHHHcCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhCCc
Confidence 34445578877664 33 3445555555677889999999999988877766554555555544443333332222
Q ss_pred chhhhhhhhhhHhHHHHHHHc---CC-CCCCCcchhhhHHHHHHHHHHhhhhhc---ccccccchhHHHHHHHhhhcCCC
Q 008538 229 SVSARAGGIFLPIVKSLCLAC---GS-NTGDGTEHKLGSWLMLTCFQTSVISSS---MFLTAMAANPLSATLTLNTINQP 301 (562)
Q Consensus 229 ~~~a~~~~i~~Pi~~~i~~~~---g~-~~~~~~~~~~~~~l~~~~~~~a~~gg~---~t~iG~~~n~i~~g~l~~~~g~~ 301 (562)
+..-+. -..=|++.++++.. ++ +.+++++.+. +.. .+..=|.|.. -..++.+.-+.+.|.+++. |++
T Consensus 111 ~lGGh~-QfVRPLi~PMaeaAae~~~g~l~e~~~e~i-ka~---aAA~eN~gnFFgqniFva~~gvLLi~gtl~~~-G~~ 184 (218)
T PF06149_consen 111 RLGGHA-QFVRPLIAPMAEAAAEAKYGELSEKDREKI-KAM---AAAAENYGNFFGQNIFVAAGGVLLIQGTLKEL-GYE 184 (218)
T ss_pred ccCCCC-ccccchhhhHHHHHHhhccCCCCHhHHHHH-HHH---HHHHHHHHHHHhHHHHHhccceeeeeeeHHhc-Ccc
Confidence 222222 13445555544422 11 2222222222 111 1222233322 2334444445557777887 999
Q ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Q 008538 302 IGWMDWAKAAIVPGLVSLIVVPLLLYIIYP 331 (562)
Q Consensus 302 is~~~~~~~~~~~~li~~~~~~~~~~~~~~ 331 (562)
++-.+-.++.+|.+++.+++.....+++-|
T Consensus 185 v~~~~ia~~~IP~Ai~a~ii~~~~~~~~Dr 214 (218)
T PF06149_consen 185 VEPLHIALWAIPTAIIAFIIHGIRLYLFDR 214 (218)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888877665544
|
|
| >COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.15 Score=53.02 Aligned_cols=126 Identities=21% Similarity=0.199 Sum_probs=89.3
Q ss_pred HHHHHhCHHHHHHHHH---HHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhh
Q 008538 186 RGFIKTGLGNRIAYQF---VKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLG 262 (562)
Q Consensus 186 ~~l~~tGl~~~la~~l---~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~ 262 (562)
+.++.|++...+|-+= ++..|-+...+++.+.+++.++..++.|..+.- +++.|++.++....|++|+
T Consensus 365 a~FnwSn~G~~~AV~GA~~L~~~gl~g~~lil~~illsa~inL~IgSASAkW-ailaPIfVPMlMllGysPe-------- 435 (516)
T COG2978 365 AFFNWSNLGTIMAVKGADFLKAIGLTGLPLILGFILLSAFINLFIGSASAKW-AILAPIFVPMLMLLGYSPE-------- 435 (516)
T ss_pred HHhcccccchhheechHhHHHHcCCCCcHHHHHHHHHHHHHHHHHhhHHHHH-HHHhhHHHHHHHHhcCCHH--------
Confidence 6788999999887654 444566667788899999999999999999887 5899999999999999986
Q ss_pred HHHHHHHHHHhhhhhcccccccchh---HHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHH
Q 008538 263 SWLMLTCFQTSVISSSMFLTAMAAN---PLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLL 326 (562)
Q Consensus 263 ~~l~~~~~~~a~~gg~~t~iG~~~n---~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~ 326 (562)
+. -.+| -+|-+.|-+=+|-+ +++.++.++. .-+...+...-.++|.++...+...+..
T Consensus 436 --~t-Qaay--RigDS~tniiTPlm~yfpLil~~~~kY-~k~~GvGTL~s~mLPYsi~f~i~w~~l~ 496 (516)
T COG2978 436 --FT-QAAY--RIGDSVTNIITPLMPYFPLILAYAQKY-DKDAGVGTLMSMMLPYSIAFLIAWTLLL 496 (516)
T ss_pred --HH-HHHH--HhcccccccccchhhhHHHHHHHHHHh-CcCccHHHHHHHhhhHHHHHHHHHHHHH
Confidence 21 1222 12333332222322 3446666654 5577888999999999988776655444
|
|
| >PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.62 Score=48.65 Aligned_cols=160 Identities=19% Similarity=0.151 Sum_probs=95.9
Q ss_pred HhccCChhHHHHHHHHHHHhcCCCCHHH---HH-hhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHH
Q 008538 138 IAQPLPLGAVALLGLGASVLTKTLTFSA---AF-SAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLG 213 (562)
Q Consensus 138 ~~~~i~~~~~all~~~~l~~~g~~~~~~---v~-~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~ 213 (562)
+.-++|.....+.+.......+..+.+| ++ +.+++..++.+.+.+++-+.++.||..|.+.+.+.+. |- | ..
T Consensus 216 v~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~a~~~ki~~~i~~im~Fk~~l~~tG~~~~l~~~l~~~-~i-p--~~ 291 (385)
T PF04165_consen 216 VLFKLPLALGLLIALLAILIYNRFRRKEIKEVLKEALEPKILLLIIGIMIFKEILEATGVVEELPEFLSSL-GI-P--PF 291 (385)
T ss_pred HHHcchHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHhC-CC-c--HH
Confidence 3345665544444444444555556664 44 6788899999999999999999999999999877752 22 2 23
Q ss_pred HHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhH--HH-
Q 008538 214 YSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANP--LS- 290 (562)
Q Consensus 214 ~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~--i~- 290 (562)
..+.++.++.+...+.+.+.+ ++-+|+..+... | .. .+ ..+++++..|.+ -||... +.
T Consensus 292 li~~lipFivG~~TGi~~a~v-gi~fPll~~l~~--~--~~---------~~--~la~~~g~~Gvm---lSP~HlCLvlT 352 (385)
T PF04165_consen 292 LIIALIPFIVGLITGITQAFV-GIAFPLLAPLIG--G--LP---------YL--VLAYASGFAGVM---LSPVHLCLVLT 352 (385)
T ss_pred HHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHhcc--c--ch---------HH--HHHHHHHHHHHh---hchHHHHHHHH
Confidence 334444444444445444444 468898877642 1 11 22 344444433332 134433 22
Q ss_pred HHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHH
Q 008538 291 ATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLL 326 (562)
Q Consensus 291 ~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~ 326 (562)
..| .+.++++-.+...++.++..+...++.
T Consensus 353 ~eY------Fk~~~~~v~k~l~~p~~i~~~~~~~~~ 382 (385)
T PF04165_consen 353 AEY------FKADLGKVYKKLLPPALIFLAAGLLYY 382 (385)
T ss_pred HHH------hcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 456788888888888877665555443
|
|
| >COG3817 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.21 Score=47.59 Aligned_cols=144 Identities=10% Similarity=-0.054 Sum_probs=84.9
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHH--HHHHHHHH
Q 008538 407 ESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHI--GAMFTAFL 484 (562)
Q Consensus 407 ~~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~--~il~Pi~~ 484 (562)
|.+.|..++==. .-.+|......|+.|.+++...++....+ ...-+....+.+...+.++.|.-.+ .+..-+-.
T Consensus 162 d~v~wa~iLPQ~-LaaLG~vFa~aGvG~~ia~L~~~~i~~Ds---rfiaV~~Y~vgMalfTmiMGNaFAAFpViTagIgv 237 (313)
T COG3817 162 DQVSWAAILPQM-LAALGAVFASAGVGDVIAHLISEIIPADS---RFIAVAAYCVGMALFTMIMGNAFAAFPVITAGIGV 237 (313)
T ss_pred HHhhHHHHHHHH-HHHHHHHHHhcchhHHHHHHHHHHcccch---hHHHHHHHHHHHHHHHHHHcccchhceeeeccccc
Confidence 578887765111 22356777889999999999998876543 3333444455444455566665222 11112222
Q ss_pred H-HHHHcCCChHHHHHHHHHHHhhhhcccccccccchheecCCC-cCHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008538 485 S-VASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANY-VPLAKWWGYGFIVSIVNIIIWLGVGGV 554 (562)
Q Consensus 485 ~-~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~-~~~~~~~k~g~~~~li~~vv~~~~~~~ 554 (562)
| +.-+.|-||...+..=..+.-|+..+||....-|.+-...-+ -+-...+|.-.|..++.+++-+...|+
T Consensus 238 Pilv~q~ganPaV~~AigM~sGfCGTLlTPMAANFN~vPAALlel~DknaVIKaQ~ptalvlli~ni~Lmyf 309 (313)
T COG3817 238 PILVGQLGANPAVAGAIGMLSGFCGTLLTPMAANFNIVPAALLELKDKNAVIKAQAPTALVLLIANIFLMYF 309 (313)
T ss_pred ceeeeccCCChHHHHHHHHHhhhhhhccChhhhhcCcchHHHhCCccccceeeeccchhhHHHHHHHHHHHH
Confidence 3 235789999765543334444556788988777765433211 233446677778888877777665554
|
|
| >COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.016 Score=58.20 Aligned_cols=165 Identities=12% Similarity=0.048 Sum_probs=105.2
Q ss_pred CCCCCchHHHHHHHHHHHHHhcCCChHHHHhccCChhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHH
Q 008538 376 GRLNVDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSF 455 (562)
Q Consensus 376 ~~~~i~~~~vali~~~ll~l~g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~ 455 (562)
..-|+..+..+-+|..++.+...+ |. .+.|+++++++.+...-+.+++.+|-.|++.+..++.+..+|.. ..+
T Consensus 18 R~GGIglG~~GGlGv~il~f~f~~--~P---~~~PidViliImAVv~aaaamQaaGGLD~mvqiAEkiLRknPK~--iT~ 90 (436)
T COG2704 18 RLGGIGLGVAGGLGVLILVFIFGL--KP---GKPPIDVILIIMAVVAAAAAMQAAGGLDYMVQIAEKILRKNPKY--ITI 90 (436)
T ss_pred cccceeeeecccccHHHHhhhhcC--CC---CCCChhhHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHhCCCe--EEE
Confidence 344566666666676666543222 22 46899999999999999999999999999999999998877542 111
Q ss_pred HHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcccccccccchhe--ecCCCcCHHH
Q 008538 456 GILILLYFYSHYFFASGAA-HIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVF--YGANYVPLAK 532 (562)
Q Consensus 456 ~il~~~~~l~~~~~~sn~a-~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~--~~~g~~~~~~ 532 (562)
+-=.+...+ + ++.+++ .+.-.+|++.+++...|+.|..=..+-.++++.+=..+|++.....+. +..-+.++.+
T Consensus 91 lAP~Vty~l--T-~maGTGh~vySilPVI~eVA~~~gIrPeRPls~avVsSQ~aItASPISAAVV~~~a~l~~~g~~~l~ 167 (436)
T COG2704 91 LAPFVTYTL--T-ILAGTGHVVYSILPVIAEVAKKNGIRPERPLSAAVVSSQIAITASPISAAVVYMSAVLEPLGISYLT 167 (436)
T ss_pred ehhHHHHHH--H-HhhcCCceeeeehhHHHHHHHHcCCCCCCcchHHHHHhhhhhhcCchHHHHHHHHHHHhhcCcchhe
Confidence 111111111 1 344554 446778999999999999875333333445555434456654332221 1122345778
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 008538 533 WWGYGFIVSIVNIIIWLG 550 (562)
Q Consensus 533 ~~k~g~~~~li~~vv~~~ 550 (562)
.+-..+|.+++...+..+
T Consensus 168 ll~v~IPaTl~g~~~~~l 185 (436)
T COG2704 168 LLMVTIPSTLLGVLLMAL 185 (436)
T ss_pred eeeEEecHHHHHHHHHHH
Confidence 888889998887766544
|
|
| >PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.52 Score=51.32 Aligned_cols=134 Identities=16% Similarity=0.114 Sum_probs=87.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCC
Q 008538 172 DPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGS 251 (562)
Q Consensus 172 ~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~ 251 (562)
++..+-+...+.++..++.+|...-+++.+.+ .|.-+..+...+.. +-+++.+|+++.- +++.++=...+++.|.
T Consensus 386 ~~~~i~~~~~~~~a~vm~~SGm~~~la~~~a~-~G~~yp~~aP~lG~---lG~FiTGS~T~SN-~lF~~lQ~~~A~~lgl 460 (522)
T PF02652_consen 386 WPPAIAIIFFLALAYVMNYSGMTATLALALAA-TGAAYPFFAPFLGW---LGSFITGSNTSSN-ALFGPLQVTTAQQLGL 460 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-hCccHHHHHHHHHH---HhcccccchHHHH-HHHHHHHHHHHHHcCC
Confidence 56778888888899999999999999998888 77644433333333 3334444444443 3788888889999999
Q ss_pred CCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHH
Q 008538 252 NTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLL 326 (562)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~ 326 (562)
||. ++. .+.+.||...-.=+|+|+.++.-.- |..=.-++-+|..++++++..++..++.
T Consensus 461 ~~~----------l~~---Aaq~~Gg~~g~mIsp~~i~~a~a~~---g~~g~Eg~ilr~t~~~~l~~~~i~g~~~ 519 (522)
T PF02652_consen 461 PPL----------LIA---AAQNVGGAMGNMISPQNIVAAAAAV---GLSGKEGEILRKTLPPSLIYALIVGLLV 519 (522)
T ss_pred CHH----------HHH---HHHHHHHHHHhccCHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 874 222 2233333322223578877653222 3333467999999999887665555443
|
; GO: 0015129 lactate transmembrane transporter activity, 0015727 lactate transport |
| >COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.6 Score=46.78 Aligned_cols=157 Identities=11% Similarity=0.066 Sum_probs=107.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHh------hcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhh
Q 008538 148 ALLGLGASVLTKTLTFSAAFS------AFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEA 221 (562)
Q Consensus 148 all~~~~l~~~g~~~~~~v~~------~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~ 221 (562)
+..+..+...-|-++||.+.+ +..+-+.+.+.|.-.++....-.|-..|+-+++... .+.+.+.+........
T Consensus 265 ~~GA~~LA~~~~~l~w~~~~~a~~~T~k~tsmV~~IllGa~~FSlvF~g~~G~~~ve~~l~~l-pgg~igFli~~~~~iF 343 (447)
T COG4664 265 AVGALLLALANGRLNWQMVKQALDATAKLTSMVLFILLGATVFSLVFYGLNGHAWVEHLLTNL-PGGEIGFLIVSNILIF 343 (447)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhheeecCchHHHHHHHhcC-CCCceeeehHHHHHHH
Confidence 334444555677888876553 344557788888888888888888888888877765 4566777778888888
Q ss_pred hhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCC
Q 008538 222 LLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQP 301 (562)
Q Consensus 222 ~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~ 301 (562)
++..|.|-..-.. +..|+..++++++|.|+ .|.++..+.|+-.+.. +||=-...=|+...+-.+
T Consensus 344 ~LgffldffEiaf--IivPllaPva~~lgIDl-----------iwfGVll~~NlQtSFl---~PPfgfslfYLrgVAp~~ 407 (447)
T COG4664 344 FLGFFLDFFEIAF--IIVPLLAPVADKLGIDL-----------IWFGVLLGVNLQTSFL---HPPFGFSLFYLRGVAPPS 407 (447)
T ss_pred HHHHHHHHHHHHH--HHHHhhHHHHHHcCCcH-----------HHHHHHHHHhhhhhcc---CCCchhhHHHhccCCCCC
Confidence 9999998887765 89999999999999984 6677777777654322 122112222444433456
Q ss_pred ccHHHHHHHHhHHHHHHHHH
Q 008538 302 IGWMDWAKAAIVPGLVSLIV 321 (562)
Q Consensus 302 is~~~~~~~~~~~~li~~~~ 321 (562)
++-+|-.+-..|.-++-+++
T Consensus 408 VTt~qIy~G~vPfiliqvl~ 427 (447)
T COG4664 408 VTTGQIYRGAVPFILIQVLV 427 (447)
T ss_pred cchhhhhhccccHHHHHHHH
Confidence 77778776666665554433
|
|
| >COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.2 Score=50.71 Aligned_cols=144 Identities=17% Similarity=0.056 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHc
Q 008538 411 WDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASAL 490 (562)
Q Consensus 411 w~~ll~~~~~~~l~~~l~~tG~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~ 490 (562)
-+..+.+.....++..++++|..|.+.+.+.+-++... +++..+....++.++....+.|.++...+++--..|+-..+
T Consensus 73 agLgm~Im~~~GfA~yM~~iga~~~~V~l~skPL~~ik-spy~ll~~ay~i~~~m~~ai~SAtGlg~llmaTLfPvlv~~ 151 (451)
T COG3069 73 AGLGMMIMALCGFARYMTHIGANDAVVKLASKPLKYIK-SPYLLLIAAYFVACLMSLAIPSATGLGVLLMATLFPVLVNL 151 (451)
T ss_pred ccHHHHHHHhhcHHHHHHHhChhHHHHHHHhchhhhhc-ccHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHh
Confidence 45566667777788999999999999999877665542 33555555666677777778898888877777777788899
Q ss_pred CCChHHHHHHHHHHHhhhhcccccccccchheecCCCcCHHHHHH-HhHHHHHHHHHHHHHHHHHHHHH
Q 008538 491 GCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWG-YGFIVSIVNIIIWLGVGGVWWKF 558 (562)
Q Consensus 491 Gv~p~~~~~~~~~~~~~~~~~tp~~~~~n~i~~~~g~~~~~~~~k-~g~~~~li~~vv~~~~~~~~w~~ 558 (562)
|+++...+.. +++..+-.+.|- +....++....+.+..|+.- .-.|.+++.++.....-++|-|+
T Consensus 152 Gvsr~aaaAi--~Ast~~i~lsp~-s~~sv~aAe~sgm~i~~~~~~~~lpv~i~~iI~~ai~hff~qr~ 217 (451)
T COG3069 152 GVSRGAAAAI--CASTAAIILSPT-SGDSVLAAQVSGMKIADFAFHYQLPVSIAAIIGMAIAHFFWQRY 217 (451)
T ss_pred cccchhhHHH--hhchHHheeCCC-CcchHHHHHhcCCceEeeeeccCcHHHHHHHHHHHHHHHHHHHH
Confidence 9996443221 122222334454 34444555566777777654 44555555555444433444334
|
|
| >PRK10420 L-lactate permease; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=1.3 Score=48.60 Aligned_cols=134 Identities=13% Similarity=0.053 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCC
Q 008538 172 DPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGS 251 (562)
Q Consensus 172 ~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~ 251 (562)
++..+-+...+.++..++.+|...-++..+. ..|.-+..+...+..++.+++ .+|+.+-+ ++.++=...+++.|.
T Consensus 406 ~~~~iti~~~vala~vm~~SGm~~~la~~~A-~~G~~yp~~aP~lG~lG~FvT--GS~TsSN~--LF~~lQ~~tA~~lgl 480 (551)
T PRK10420 406 ALPIYSIGMVLAFAFISNYSGLSSTLALALA-HTGHAFTFFSPFLGWLGVFLT--GSDTSSNA--LFAALQATAAQQIGV 480 (551)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHH-HhCccHHHHHHHHHhhhcccc--cccHHHHH--HHHHHHHHHHHHcCC
Confidence 4677778888889999999999999999777 466654444444444444443 23444433 788888889999999
Q ss_pred CCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHH
Q 008538 252 NTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLL 326 (562)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~ 326 (562)
|+. ++ ..+.+.||...=.=+|+|+.++.-.- |..=.-++.+|..++++++..++...+.
T Consensus 481 ~~~----------li---~Aaq~~Gg~~GkmIspq~I~~a~a~v---g~~G~Eg~ilr~t~~~~l~~~~~~gi~~ 539 (551)
T PRK10420 481 SDV----------LL---VAANTTGGVTGKMISPQSIAIACAAV---GLVGKESDLFRFTVKHSLIFTCMVGVIT 539 (551)
T ss_pred CHH----------HH---HHHHHHhhHHhhccCHHHHHHHHHHH---ccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 864 22 22233333322223588887643222 2222456888888888877555544443
|
|
| >TIGR00366 conserved hypothetical integral membrane protein | Back alignment and domain information |
|---|
Probab=94.44 E-value=1 Score=47.40 Aligned_cols=91 Identities=23% Similarity=0.163 Sum_probs=63.1
Q ss_pred CCHHHHHhhcCC------CHHHHHHHHHHHHHHHHHhCHHH-----HHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCc
Q 008538 161 LTFSAAFSAFGD------PIPWLIALAFFFARGFIKTGLGN-----RIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPS 229 (562)
Q Consensus 161 ~~~~~v~~~~~~------~~i~~~~g~~~l~~~l~~tGl~~-----~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~ 229 (562)
.+++|..+.+.. ...+.+...--+...++++|+.+ .+++.+.+.. +.........+...++..|++|
T Consensus 292 ~tp~~~~~a~~~g~~~~~gi~l~fpf~agI~~im~~s~l~~~~ls~~la~~lvs~a--~~~~f~l~~~l~~~liNfFIPS 369 (438)
T TIGR00366 292 KTPMAYMRAITRAARSVAGILVQFPFYAGIMGMMEHSGVGGGGPATLITEFFINVA--NKDTFPLMTFFSAGLINIFIPS 369 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHHHHHHhhC--CccHHHHHHHHHHHHHHhcccC
Confidence 566665433322 23333333333447789998888 7776665433 3344555566889999999999
Q ss_pred hhhhhhhhhhHhHHHHHHHcCCCCC
Q 008538 230 VSARAGGIFLPIVKSLCLACGSNTG 254 (562)
Q Consensus 230 ~~a~~~~i~~Pi~~~i~~~~g~~~~ 254 (562)
..... ++..|++.++++..|+++.
T Consensus 370 GsGqw-ai~aPImvP~a~~LGvs~~ 393 (438)
T TIGR00366 370 GGGHW-AIQGPIVIPAAQALGVDLG 393 (438)
T ss_pred chHHH-HHHHHHHHHHHHHcCCCHH
Confidence 99998 5899999999999999875
|
|
| >PRK09695 glycolate transporter; Provisional | Back alignment and domain information |
|---|
Probab=94.23 E-value=1.5 Score=48.23 Aligned_cols=134 Identities=11% Similarity=-0.006 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCC
Q 008538 172 DPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGS 251 (562)
Q Consensus 172 ~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~ 251 (562)
+...+-+...+.++..++.+|....+++.+. ..|.-+..+.-.+..++.+++ .+|+.+-+ ++.++=...+++.|.
T Consensus 414 ~~~~lti~~~vala~vm~~SGm~~~La~~~a-~~G~~yp~~aP~iG~lG~FvT--GS~TsSN~--LF~~lQ~~tA~~lGl 488 (560)
T PRK09695 414 KWPILSIGMVLAFAFVTNYSGMSTTLALVLA-GTGVMFPFFSPFLGWLGVFLT--GSDTSSNA--LFGSLQSTTAQQINV 488 (560)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHH-HhCccHHHHHHHHhhhhcccc--cccHHHHH--HHHHHHHHHHHHcCC
Confidence 5567777888889999999999999999995 566644444444444444433 23444433 788888888999999
Q ss_pred CCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHH
Q 008538 252 NTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLL 326 (562)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~ 326 (562)
|+. ++ ..+.+.||...=.=+|+|+.++.-.- |..=.-++.+|..++++++..++...+.
T Consensus 489 ~~~----------li---~Aaq~~Gg~~GkmIspq~I~~a~a~v---gl~G~Eg~ilr~t~~~~l~~~~i~gi~~ 547 (560)
T PRK09695 489 SDT----------LL---VAANTSGGVTGKMISPQSIAVACAAT---GMVGRESELFRYTVKHSLIFASVIGIIT 547 (560)
T ss_pred CHH----------HH---HHHHHHhhHHhhccCHHHHHHHHHHH---ccCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 864 22 22233333322222588887743222 2222446888888888877555544433
|
|
| >TIGR00795 lctP L-lactate transport | Back alignment and domain information |
|---|
Probab=93.74 E-value=1.8 Score=47.26 Aligned_cols=134 Identities=13% Similarity=0.067 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCC
Q 008538 172 DPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGS 251 (562)
Q Consensus 172 ~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~ 251 (562)
+...+-....+.++..++.+|..+-+++.+.+ .|.-+..+...+..++.+++ .+|+.+-+ ++.++=...+++.|.
T Consensus 392 ~~~~lt~~~~~~~a~vm~~sGm~~~la~~~A~-~G~~yp~~aP~iG~lG~FiT--GS~TsSN~--LFg~lQ~~tA~~lGl 466 (530)
T TIGR00795 392 RLPILTIGMVLAFANVSNYSGMSKTLALALAH-TGLAFTFFSPFLGWLGVFLT--GSDTSSNL--LFGSLQLLTAEQIGL 466 (530)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-hCCchHHHHHHHHhhhcccc--cchHHHHH--HHHHHHHHHHHHcCC
Confidence 45566666667789999999999999999998 77755444444444444443 23444433 788888889999999
Q ss_pred CCCCCcchhhhHHHHHHHHHHhhhhhc-ccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHH
Q 008538 252 NTGDGTEHKLGSWLMLTCFQTSVISSS-MFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLY 327 (562)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~a~~gg~-~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~ 327 (562)
|+. ++.+ +.+.|+. ...+ +|+|+.++.-.- |..=.-+|.++..++++++..++..++.+
T Consensus 467 ~~~----------li~A---~q~~Gg~~G~mI-sp~~I~~a~a~v---g~~G~Eg~ilr~t~~~~l~~~i~~gv~~~ 526 (530)
T TIGR00795 467 PET----------LLLA---ANTVGGVMGKMI-SPQSIAIACAAV---GLVGQESDLFRKTVKYSLIYAIIVGVVAL 526 (530)
T ss_pred CHH----------HHHH---HHHHhHHHhhcc-CHHHHHHHHHHH---ccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 864 2222 2222332 2333 578877643222 33335578999999998876666555444
|
The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS. |
| >COG1620 LldP L-lactate permease [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.55 E-value=2.7 Score=44.97 Aligned_cols=145 Identities=17% Similarity=0.161 Sum_probs=92.7
Q ss_pred CCCHHHHHhhc------CCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhh
Q 008538 160 TLTFSAAFSAF------GDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSAR 233 (562)
Q Consensus 160 ~~~~~~v~~~~------~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~ 233 (562)
..+++|..+.+ .+..++-+.+.+.++..+..+|..+.+++.+... |..+..+...+..++.+++ +|++..
T Consensus 361 ~~~~~~~~~~~~~t~k~~~~p~lti~~~l~~~~l~~~SG~~~tla~~~A~~-G~~fp~fSp~lGwiG~Flt---GS~T~s 436 (522)
T COG1620 361 KIKPKDAVTAFKETLKELKLPILTIIFALAMAYLMNYSGLSKTLALALAHT-GEAFPLFSPFLGWIGVFLT---GSNTSS 436 (522)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHhc-CCCchhHhHHHHHHhhhhc---ccchHH
Confidence 46777755332 3566777888888999999999999999988876 7766555555555555444 444443
Q ss_pred hhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhH
Q 008538 234 AGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIV 313 (562)
Q Consensus 234 ~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~ 313 (562)
- ..+.|+=...+++.|.++. +. ..+.+.||.+.=.=+++|..++.-.....| .-+|-+|...+
T Consensus 437 N-~lFg~lQ~~~A~~iG~s~~----------l~---~AantvGg~~gkMIspqsIa~acaavg~~g---kEg~l~r~tv~ 499 (522)
T COG1620 437 N-LLFGPLQQTTAEQIGLSPV----------LL---VAANTVGGVMGKMISPQSIAAACAAVGLVG---KEGDLLRKTVK 499 (522)
T ss_pred H-HHHHHHHHHHHHHcCCCHH----------HH---HHHHhhhhhhccccCHHHHHHHHHHhcccc---chhHHHHHHHH
Confidence 3 2688888889999999864 32 222334444322225788877543232223 34588888888
Q ss_pred HHHHHHHHHHHH
Q 008538 314 PGLVSLIVVPLL 325 (562)
Q Consensus 314 ~~li~~~~~~~~ 325 (562)
+++...++..++
T Consensus 500 ~sl~~~~~~~i~ 511 (522)
T COG1620 500 PSLIYLIIAGVI 511 (522)
T ss_pred HHHHHHHHHHHH
Confidence 887755544433
|
|
| >PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.066 Score=53.11 Aligned_cols=44 Identities=27% Similarity=0.429 Sum_probs=35.9
Q ss_pred hhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHH
Q 008538 276 SSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLL 325 (562)
Q Consensus 276 gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~ 325 (562)
+|.++..|+-||.+.+| ..+++..||.+.|.|.+++.+.+...+
T Consensus 300 SGGMlIPGNIPNIIsAg------kL~I~skEWar~gvPlGl~~m~~yfi~ 343 (347)
T PF07854_consen 300 SGGMLIPGNIPNIISAG------KLKITSKEWARLGVPLGLVLMVVYFII 343 (347)
T ss_pred cCCeecCCCcchhhccc------cCccchHHHHHHcccHHHHHHHHHHHH
Confidence 45577899999999986 468999999999999998876665443
|
|
| >PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.4 Score=49.33 Aligned_cols=147 Identities=16% Similarity=0.218 Sum_probs=90.4
Q ss_pred HHHHHHHHhcCCCCHHHHHhhcCCCHHH--HHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcc
Q 008538 149 LLGLGASVLTKTLTFSAAFSAFGDPIPW--LIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPA 226 (562)
Q Consensus 149 ll~~~~l~~~g~~~~~~v~~~~~~~~i~--~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~ 226 (562)
+++...+.+.|. .++.+.+.++..+ =++.+|.+++...--|+=+|--+-++.... -..++..+..++++
T Consensus 287 F~G~lfLfFLGf---~~ay~~yQ~~l~Lre~lLVgFFLaGLVvlGglQ~WWlqpll~~m~------~~~lf~ga~~LTa~ 357 (438)
T PF07399_consen 287 FMGALFLFFLGF---TQAYKRYQSPLILREALLVGFFLAGLVVLGGLQQWWLQPLLSGMS------PLALFFGATALTAF 357 (438)
T ss_pred HHHHHHHHHHHH---HHHHHhhccchhhhHHHHHHHHHhhHHHcCchHHHHHHHHHhcCC------hhHHHHHHHHHHHH
Confidence 444334444443 3455444444322 012234445555555556666666665442 24566777889999
Q ss_pred cCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcC-CCccHH
Q 008538 227 IPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTIN-QPIGWM 305 (562)
Q Consensus 227 ~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g-~~is~~ 305 (562)
.||...+. +...+- |.++. .| ..+..++..||..|.+.+.||+.-...+.+... ..++-.
T Consensus 358 tDNAalTY---Lgslv~------g~sd~----~k------YalVAGAVtGGGLTVIANAPNpaG~aiLr~~F~d~~Is~~ 418 (438)
T PF07399_consen 358 TDNAALTY---LGSLVP------GLSDA----FK------YALVAGAVTGGGLTVIANAPNPAGQAILRKHFPDGSISPL 418 (438)
T ss_pred hhhHHHHH---HHHhcc------CCCHH----HH------HHHHhheeccCceeEeccCCChhhHHHHhccCCCCCcChH
Confidence 99987664 333321 22211 11 245566777899999999999998888877654 479999
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 008538 306 DWAKAAIVPGLVSLIVVP 323 (562)
Q Consensus 306 ~~~~~~~~~~li~~~~~~ 323 (562)
..+...++|+++...+..
T Consensus 419 ~L~l~AL~PT~ia~~~F~ 436 (438)
T PF07399_consen 419 GLFLAALPPTLIAALAFW 436 (438)
T ss_pred HHHHHHHhHHHHHHHHHH
Confidence 999999999988765543
|
The function of this family is unknown. |
| >PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins | Back alignment and domain information |
|---|
Probab=92.58 E-value=1 Score=44.52 Aligned_cols=145 Identities=20% Similarity=0.125 Sum_probs=89.4
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCC-CchhHHHHHHHHhhhhhcccCchhhhhh----hhhhH
Q 008538 166 AFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGS-SSLGLGYSLVFSEALLAPAIPSVSARAG----GIFLP 240 (562)
Q Consensus 166 v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~-~~~~~~~~l~~~~~~ls~~~~~~~a~~~----~i~~P 240 (562)
..+..+|..++==+ .-.++....+.|+.|-+++.+...... +...-....++--++.+..++|.-+... .+-.|
T Consensus 156 ll~~vG~a~iLPQl-LAaLG~vF~~AGVG~vIa~lv~~viP~g~~~~~ViaYclGMalFTmIMGNAFAAF~ViTaGIGiP 234 (308)
T PF06166_consen 156 LLDQVGWAAILPQL-LAALGAVFTAAGVGDVIASLVSSVIPEGNRFIGVIAYCLGMALFTMIMGNAFAAFPVITAGIGIP 234 (308)
T ss_pred HHHHhhHHHHHHHH-HHHHHHHHHhcCccHHHHHHHHhhcCCCCeehhHHHHHHHHHHHHHHHccHHHHhHHHHhccCce
Confidence 34556665443221 234678899999999999998888743 4445555666667788888989876531 12233
Q ss_pred hHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhh-hhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHH
Q 008538 241 IVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVI-SSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSL 319 (562)
Q Consensus 241 i~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~-gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~ 319 (562)
.++ .+.|-||- ..-.+...+.. |..+||...--|.+-+..+|..-.. .-.|.-.|.+++.+
T Consensus 235 fvi---~~~GgnPa----------ivgAlgM~aGyCGTLmTPMAANFNiVPaALLElkDk~-----gVIKaQ~p~Al~ll 296 (308)
T PF06166_consen 235 FVI---AQFGGNPA----------IVGALGMTAGYCGTLMTPMAANFNIVPAALLELKDKY-----GVIKAQAPTALVLL 296 (308)
T ss_pred EEE---ecCCCCHH----------HHHHHHHhhcchhcccChhhhhcCcchHHHhcCCccc-----cchhhhhHHHHHHH
Confidence 322 23355552 33333322222 4457888777788888887754111 22467788888888
Q ss_pred HHHHHHHHHH
Q 008538 320 IVVPLLLYII 329 (562)
Q Consensus 320 ~~~~~~~~~~ 329 (562)
++-+.+.|++
T Consensus 297 vv~I~LMy~l 306 (308)
T PF06166_consen 297 VVNIVLMYFL 306 (308)
T ss_pred HHHHHHHHHH
Confidence 8877776654
|
The function of this family is unclear. |
| >PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange | Back alignment and domain information |
|---|
Probab=92.53 E-value=2.6 Score=43.21 Aligned_cols=197 Identities=18% Similarity=0.111 Sum_probs=113.5
Q ss_pred CCHHHHHHHHHHHH-HHHHHHhccCChhHHHHHHHHHHHh----cCCCCHHHHH-hhcC--CCHHHHHHHHHHHHHHHHH
Q 008538 119 VSKNAWQLLAIFLA-TIVGIIAQPLPLGAVALLGLGASVL----TKTLTFSAAF-SAFG--DPIPWLIALAFFFARGFIK 190 (562)
Q Consensus 119 lt~~~~~~l~i~~~-~i~lw~~~~i~~~~~all~~~~l~~----~g~~~~~~v~-~~~~--~~~i~~~~g~~~l~~~l~~ 190 (562)
.|++++.-+.+=.. .+.+.+.-..+...++++++...++ +|+.+ |..+ +.|. -+.--++...|.+.+.+.+
T Consensus 294 rt~~~~~~L~vQa~~~vwLi~~LA~HlA~VGlIGLsVIil~Taf~Git~-EH~iGkAFeEaLPFTALL~VFF~vVaVI~d 372 (515)
T PF06450_consen 294 RTKQDKAKLIVQALIGVWLIVALAFHLAEVGLIGLSVIILATAFCGITD-EHAIGKAFEEALPFTALLVVFFAVVAVIID 372 (515)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcc-hhhhhHhHhhccchHHHHHHHHHHHHHHhh
Confidence 45555544444222 2222222335666666665554332 45543 3332 2222 2334444556667788899
Q ss_pred hCHHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHH
Q 008538 191 TGLGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCF 270 (562)
Q Consensus 191 tGl~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~ 270 (562)
..+.+-+.++++..-++ .....+.+..+++|+..||+-+.. +.+-=...-.+.-.+++ +.| ..+..++-
T Consensus 373 Q~LF~PiI~~VL~~~~~---~Ql~~fy~aNGlLS~iSDNVFV~T--VYI~E~k~A~~~G~Is~-----~qf-~~LAVAIN 441 (515)
T PF06450_consen 373 QHLFTPIIQFVLSAEGS---SQLAMFYIANGLLSMISDNVFVAT--VYINEVKAALDAGVISR-----EQF-DLLAVAIN 441 (515)
T ss_pred hhhhHHHHHHHHcCCCc---cchhHHHHhhhhHHhhccceeEEE--EeHhhHHHHHHcCCcCH-----HHH-hhHHhhhh
Confidence 99999999998865433 446678889999999999987654 33332222222222222 122 13444566
Q ss_pred HHhhhhhcccccccchhHHH-HHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008538 271 QTSVISSSMFLTAMAANPLS-ATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYII 329 (562)
Q Consensus 271 ~~a~~gg~~t~iG~~~n~i~-~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~ 329 (562)
.++|+.+..||-|...=+.. .+.+... .+.|+++.....+|.+++..+++.+..+..
T Consensus 442 TGTNlPSVATPNGQAAFLFLLTSalAPL--irLSYgrMV~MAlPYTiVl~~vGl~~v~~~ 499 (515)
T PF06450_consen 442 TGTNLPSVATPNGQAAFLFLLTSALAPL--IRLSYGRMVWMALPYTIVLTLVGLLAVEFL 499 (515)
T ss_pred cCCCCCcCcCCCchhHHHHHHHHhhHHH--HHHhHhhHHhHhccHHHHHHHHHHHHHHHh
Confidence 67888888888776543322 2222222 478899998889999988777666554443
|
Unlike NhaA, IPR004670 from INTERPRO, this activity is not pH dependent.; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0016021 integral to membrane |
| >COG3819 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.20 E-value=9.4 Score=35.18 Aligned_cols=184 Identities=15% Similarity=0.175 Sum_probs=91.3
Q ss_pred HHhccCChhHHHHHHHHHHHhcCCCCHHHHHh----hcCCC-HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchh
Q 008538 137 IIAQPLPLGAVALLGLGASVLTKTLTFSAAFS----AFGDP-IPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLG 211 (562)
Q Consensus 137 w~~~~i~~~~~all~~~~l~~~g~~~~~~v~~----~~~~~-~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~ 211 (562)
++.+.-|..++...++..-+..| ++..|+++ +|.++ .+-.+.-..-+.+.+|+.|+=++--+++.+.-+-+..+
T Consensus 16 FiLk~n~~lvVv~agi~tglvsg-~~~~~~l~~lGk~f~n~R~l~i~~l~LpligllEr~GLrerA~~~I~~ik~aT~Gr 94 (229)
T COG3819 16 FILKFNPILVVVVAGIVTGLVSG-MSFVEVLEILGKEFVNNRYLTIIWLILPLIGLLERHGLRERAQNLIQKIKAATVGR 94 (229)
T ss_pred HHHhcCchhHHHHHHHHHHHHcc-CCHHHHHHHHhHHHhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhh
Confidence 34444444444444444434444 46666553 44442 22233333666789999999999888877653222222
Q ss_pred HHHHHHH---Hhhhhhcc-cCchhhhhhhhhhHhHHHHHH-----HcCCCCCCCcchhhhHHHHHHHHHHhhhhhc---c
Q 008538 212 LGYSLVF---SEALLAPA-IPSVSARAGGIFLPIVKSLCL-----ACGSNTGDGTEHKLGSWLMLTCFQTSVISSS---M 279 (562)
Q Consensus 212 ~~~~l~~---~~~~ls~~-~~~~~a~~~~i~~Pi~~~i~~-----~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~---~ 279 (562)
++..-.+ +++.++.- ++..+- +.=|+..++++ +.| +-.++++.+.. .+ .+..-|.|-. -
T Consensus 95 ll~~Yl~iRelaaa~gl~sLgGHpQ----~VRPLlaPMaEaAAe~~~g-~Lte~~~~~ik-A~---sAatdNvg~FFged 165 (229)
T COG3819 95 LLTVYLFIRELAAALGLTSLGGHPQ----MVRPLLAPMAEAAAESRFG-KLTEKERQKIK-AM---SAATDNVGLFFGED 165 (229)
T ss_pred HHHHHHHHHHHHHHhchhhhCCChh----hhhHhhhhHHHHHhhhhcc-cCChhHHHHHH-HH---Hhhcchhhhhhhhh
Confidence 2222222 23333322 222221 23444444443 233 11122333311 11 1112222221 2
Q ss_pred cccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Q 008538 280 FLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYP 331 (562)
Q Consensus 280 t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~ 331 (562)
+.++-+.=+.+.+++++. |++.....--.+++|.+++.+++.....|.+-|
T Consensus 166 iFva~g~illi~~fl~q~-Gi~~epl~ia~w~IptaI~a~iIh~~rl~lfDk 216 (229)
T COG3819 166 IFVAAGSILLIHGFLEQS-GIDVEPLHIAVWAIPTAIIAFIIHAIRLYLFDK 216 (229)
T ss_pred HHHHhhhHHHHHHHHHhc-CCcccchhhhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334444445567888776 887777777778888888877776665555433
|
|
| >COG4756 Predicted cation transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.092 Score=50.16 Aligned_cols=82 Identities=17% Similarity=0.287 Sum_probs=54.9
Q ss_pred hhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCC
Q 008538 222 LLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQP 301 (562)
Q Consensus 222 ~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~ 301 (562)
.+|+..||.+.++ +-+.|-.-..- . +...+++. ++|.++..|+-||.+.+| ..+
T Consensus 278 ~~SAv~DNATL~A-AevgP~lteeq--------------i-rsalmsLv----IsGGmlIPGNiPNIV~AG------rLr 331 (367)
T COG4756 278 LLSAVADNATLVA-AEVGPELTEEQ--------------I-RSALMSLV----ISGGMLIPGNIPNIVMAG------RLR 331 (367)
T ss_pred HHHHHhcchhhHH-HHhCcHhhHHH--------------H-HHHHHHHH----HcCCeecCCCCcceeeee------eEE
Confidence 4677889988876 34666532211 1 11222333 345577889999999886 258
Q ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 008538 302 IGWMDWAKAAIVPGLVSLIVVPLLLYII 329 (562)
Q Consensus 302 is~~~~~~~~~~~~li~~~~~~~~~~~~ 329 (562)
+++.||.+.+.|.++..+.....+.+.+
T Consensus 332 Itm~EWar~gvP~Gia~~~a~fi~i~vL 359 (367)
T COG4756 332 ITMKEWARLGVPVGIAVFIAIFIYILVL 359 (367)
T ss_pred eehhhHHHhcccHHHHHHHHHHhheeEe
Confidence 9999999999999988776655554433
|
|
| >PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function | Back alignment and domain information |
|---|
Probab=90.23 E-value=13 Score=39.41 Aligned_cols=131 Identities=18% Similarity=0.086 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhC-----HHHHHHHHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHH
Q 008538 172 DPIPWLIALAFFFARGFIKTG-----LGNRIAYQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLC 246 (562)
Q Consensus 172 ~~~i~~~~g~~~l~~~l~~tG-----l~~~la~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~ 246 (562)
+++++-|-.=-.+.+.+..+| +.+.+++++.+.. ++........+.++++..|++|.-..- ++=.|++++-+
T Consensus 312 ~gIllQFPfYAGImGmm~~sgl~g~sLa~~is~~fvsia--t~~TfP~~~flsagivn~FVPSGGGqW-aVqgP~~~~Aa 388 (453)
T PF02667_consen 312 AGILLQFPFYAGIMGMMTGSGLGGVSLAQVISNFFVSIA--TPTTFPLFTFLSAGIVNFFVPSGGGQW-AVQGPIVMPAA 388 (453)
T ss_pred cceeeechHHHHHHHHHhhcCCCcchHHHHHHHHHHHhc--CCccHHHHHHHHHHHheeEecCCCceE-EEecchHHHHH
Confidence 444444433333446677777 5669999988874 455667777888889999999998886 47899999999
Q ss_pred HHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHH
Q 008538 247 LACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVP 323 (562)
Q Consensus 247 ~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~ 323 (562)
+++|.|+. ...++.+++-....+.-|. -+.-.+.- .++...|-+-+.+...++..++..
T Consensus 389 ~~Lgv~~~---------~~~ma~a~Gda~tNmiQPF------WaLPlL~I---~GL~aRDImGy~~~~ll~~~~i~~ 447 (453)
T PF02667_consen 389 QALGVDLG---------KTVMAYAWGDAWTNMIQPF------WALPLLGI---AGLKARDIMGYCVVILLVSGIIVS 447 (453)
T ss_pred HHhCCCHH---------HHHHHHHHHHHHHHHHHHH------HHHHHHHH---cCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999875 2334555554433332221 11112211 136677888777666655444433
|
|
| >COG3493 CitS Na+/citrate symporter [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.80 E-value=36 Score=35.09 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=37.1
Q ss_pred HHHHHHHHHhccCCh--------hHHHHHHHHHHHhcCCCCHHHHH--hhc--CCCHHHHHHHHHHHHHHHH
Q 008538 130 FLATIVGIIAQPLPL--------GAVALLGLGASVLTKTLTFSAAF--SAF--GDPIPWLIALAFFFARGFI 189 (562)
Q Consensus 130 ~~~~i~lw~~~~i~~--------~~~all~~~~l~~~g~~~~~~v~--~~~--~~~~i~~~~g~~~l~~~l~ 189 (562)
++..++.++-+++|. .+.+++....+...+.++.++.- +.+ ..+.+-++....+.+..+.
T Consensus 56 vlG~llg~IG~riPI~nk~iGG~aIl~~fvaa~~v~~~llp~~~i~avt~fm~~snFL~fyIA~LI~GSILg 127 (438)
T COG3493 56 VLGALLGEIGKRIPIVNKYIGGGAILALFVAAYLVFYNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILG 127 (438)
T ss_pred HHHHHHHHhcccCcchhhccCCchHHHHHHHHHHHHhccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhh
Confidence 455666677777663 35677777788888988765432 222 1256666666666666543
|
|
| >PF13726 Na_H_antiport_2: Na+-H+ antiporter family | Back alignment and domain information |
|---|
Probab=80.36 E-value=19 Score=28.92 Aligned_cols=64 Identities=20% Similarity=0.207 Sum_probs=42.0
Q ss_pred CChhHHHHHHHHHHHhcCCCCHHHHHh----hcCC--CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Q 008538 142 LPLGAVALLGLGASVLTKTLTFSAAFS----AFGD--PIPWLIALAFFFARGFIKTGLGNRIAYQFVKLF 205 (562)
Q Consensus 142 i~~~~~all~~~~l~~~g~~~~~~v~~----~~~~--~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~ 205 (562)
+|.-..-+++...-.+.+.++.+|..+ +... ++-+-....-.++.++.+||+.+.+++++.++.
T Consensus 18 ~nVvlalliaalvgGl~~Gl~l~~t~~~~~~Gmgg~a~~ALSY~lLGafA~aIs~sGl~~~L~~~i~~~~ 87 (88)
T PF13726_consen 18 VNVVLALLIAALVGGLVGGLGLGETMSAFIDGMGGNAETALSYILLGAFAVAISKSGLTDILAKKIIKKL 87 (88)
T ss_pred hhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHc
Confidence 554444444555555666677776543 3222 444555555566799999999999999998764
|
|
| >COG3817 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.19 E-value=10 Score=36.52 Aligned_cols=143 Identities=20% Similarity=0.121 Sum_probs=81.0
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCCCchhHHH-HHHHHhhhhhcccCchhhhh----hhhhhHhH
Q 008538 168 SAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGSSSLGLGY-SLVFSEALLAPAIPSVSARA----GGIFLPIV 242 (562)
Q Consensus 168 ~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~~~~~~~~-~l~~~~~~ls~~~~~~~a~~----~~i~~Pi~ 242 (562)
+..+|..++==+ .-.++.....+|..|.+++.+........+.... .-++.-.+.+..++|.-+.- +.+-.|+.
T Consensus 162 d~v~wa~iLPQ~-LaaLG~vFa~aGvG~~ia~L~~~~i~~DsrfiaV~~Y~vgMalfTmiMGNaFAAFpViTagIgvPil 240 (313)
T COG3817 162 DQVSWAAILPQM-LAALGAVFASAGVGDVIAHLISEIIPADSRFIAVAAYCVGMALFTMIMGNAFAAFPVITAGIGVPIL 240 (313)
T ss_pred HHhhHHHHHHHH-HHHHHHHHHhcchhHHHHHHHHHHcccchhHHHHHHHHHHHHHHHHHHcccchhceeeeccccccee
Confidence 455554433211 2235788899999999999988887554444333 44555566777777766542 12344543
Q ss_pred HHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhh-hhcccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHH
Q 008538 243 KSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVI-SSSMFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIV 321 (562)
Q Consensus 243 ~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~-gg~~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~ 321 (562)
. -+.|-||- .+.++..-+.. |..+||...--|.+-+..++-.-.. .-.|.-.|.+++.++.
T Consensus 241 v---~q~ganPa----------V~~AigM~sGfCGTLlTPMAANFN~vPAALlel~Dkn-----aVIKaQ~ptalvlli~ 302 (313)
T COG3817 241 V---GQLGANPA----------VAGAIGMLSGFCGTLLTPMAANFNIVPAALLELKDKN-----AVIKAQAPTALVLLIA 302 (313)
T ss_pred e---eccCCChH----------HHHHHHHHhhhhhhccChhhhhcCcchHHHhCCcccc-----ceeeeccchhhHHHHH
Confidence 2 25565552 43333332222 4446777666677777665532111 1235566777777777
Q ss_pred HHHHHHHH
Q 008538 322 VPLLLYII 329 (562)
Q Consensus 322 ~~~~~~~~ 329 (562)
-++..|++
T Consensus 303 ni~LmyfL 310 (313)
T COG3817 303 NIFLMYFL 310 (313)
T ss_pred HHHHHHHH
Confidence 66666554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 562 | |||
| 4f35_D | 449 | Transporter, NADC family; transport protein; HET: | 100.0 | |
| 4f35_D | 449 | Transporter, NADC family; transport protein; HET: | 99.74 |
| >4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-53 Score=456.29 Aligned_cols=415 Identities=18% Similarity=0.280 Sum_probs=351.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHH
Q 008538 119 VSKNAWQLLAIFLATIVGIIAQPLPLGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIA 198 (562)
Q Consensus 119 lt~~~~~~l~i~~~~i~lw~~~~i~~~~~all~~~~l~~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la 198 (562)
.+++++..++++++++++|++|.+|..++++++..++.++|+.++||++++++++++++++|+++++.+++|||+.||++
T Consensus 28 ~~~~~~~~lai~~~~~~lw~te~iP~~vtall~~~l~~l~gv~~~~~a~~~~~~~~i~li~g~~~la~al~~tGl~~riA 107 (449)
T 4f35_D 28 FEHNVVLGISMLAFIAVLWLTEALHVTVTAILVPVMAVFFGIFETQAALNNFANSIIFLFLGGFALAAAMHHQGLDKVIA 107 (449)
T ss_dssp STTHHHHHHHHHHHHHHHHTTTSSCSHHHHHHHHHHHHHTTSSCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHCCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCchhHHHHHHHHhhhhhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhc
Q 008538 199 YQFVKLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSS 278 (562)
Q Consensus 199 ~~l~~~~g~~~~~~~~~l~~~~~~ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~ 278 (562)
+++.++.|++++++.+.+++.+.++|++++|+++++ ++.|+..+++++.+.+++ |+..+.++++.++++++||.
T Consensus 108 ~~il~~~g~~~~~l~~~~~~~~~~lS~~isn~a~~~--~~~Pi~~~i~~~~~~~~~----~~~~~~lll~~~~aa~igg~ 181 (449)
T 4f35_D 108 DKVLAMAQGKMSVAVFMLFGVTALLSMWISNTATAA--MMLPLVLGVLSKVDADKQ----RSTYVFVLLGVAYSASIGGI 181 (449)
T ss_dssp HHHHHTTCSCTHHHHHHHHHHHHHHHHHSCSHHHHH--HHHHHHHHHSCSCCCSSC----CSSTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHhcchHHHH--HhchHHHHHHHHHhhccc----hhHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999988765 899999999999988775 33344677889999999999
Q ss_pred ccccccchhHHHHHHHhhhcCCCccHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCCCChhHHHHHHHHhcCCCChhH
Q 008538 279 MFLTAMAANPLSATLTLNTINQPIGWMDWAKAAIVPGLVSLIVVPLLLYIIYPPTVKSSPDAPKLAQEKLEKMGPMSTNE 358 (562)
Q Consensus 279 ~t~iG~~~n~i~~g~l~~~~g~~is~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 358 (562)
.+++|+++|.+..+ +.+++|.||++.+.|++++.+++.+.+.++++|++.++.++ +.++..+.+++|
T Consensus 182 ~t~ig~~~N~i~~~------~~~~~f~~~~~~~~p~~li~l~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~ 248 (449)
T 4f35_D 182 ATLVGSPPNAIAAA------EVGLSFTDWMKFGLPTAMMMLPMAIAILYFLLKPTLNGMFE-------LDRAPVNWDKGK 248 (449)
T ss_dssp SSSSSSHHHHHHHH------HHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------------CCCCCTH
T ss_pred cccCcCCCcccccc------cccccHHHhhhhcCchHHHHHHHHHHHHHHHhcccccccch-------hhccchhhhHHH
Confidence 99999999998764 34689999999999999999999999999999887644322 223344566778
Q ss_pred HHHHHHHHHHHHHHHhcC-----CCC--CchHHHHHHHHHHHHHhcCCChHHHHhccCChhHHHHHHHHHHHHHHHHHhC
Q 008538 359 KIMAGTLLLTVGLWVFGG-----RLN--VDPVTAAILGLSILLVTGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYG 431 (562)
Q Consensus 359 ~~~l~i~~~~i~l~i~~~-----~~~--i~~~~vali~~~ll~l~g~~~~~~~~~~~i~w~~ll~~~~~~~l~~~l~~tG 431 (562)
+.....+..++++|+... .++ .+...+++.++.++...++.++||+. +++||+++++++|+++++.+++++|
T Consensus 249 ~~~~~~~~l~i~l~~~~~~l~~~~~~~~~~~~~val~~~~ll~~~~~l~~~~~~-~~i~W~~l~~~~g~~~l~~~l~~sG 327 (449)
T 4f35_D 249 VVTLGIFGLTVFLWIFSSPINAALGGFKSFDTLVALGAILMLSFARVVHWKEIQ-KTADWGVLLLFGGGLCLSNVLKQTG 327 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHTTSSCHHHHH-HHSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHhhhhhccchhhhh-cccCchHHHHhhhHHHHhHHHHhcC
Confidence 888888888777776542 223 33456667777777788999999986 8899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhcc
Q 008538 432 LITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGL 511 (562)
Q Consensus 432 ~~~~la~~l~~~~~~~~~~~~~~~~il~~~~~l~~~~~~sn~a~~~il~Pi~~~~a~~~Gv~p~~~~~~~~~~~~~~~~~ 511 (562)
+.+|+++.+.+..++.+. ... ..+........++|.||++.+.++.|++.++++..|+||..+.++.++++++ +++
T Consensus 328 ~~~~la~~l~~~~~~~~~--~~~-~~~~~~~~~~ls~f~sn~a~~~~l~Pi~~~~a~~~g~~p~~~~~~~~~~~s~-~~~ 403 (449)
T 4f35_D 328 TSVFLANALSDMVSHMGI--FVV-ILVVATFVVFLTEFASNTASAALLIPVFATVAEAFGMSPVLLSVLIAVAASC-AFM 403 (449)
T ss_dssp HHHHHHHHHHHHHHTTCS--HHH-HHHHHHTTSEETEECCHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHC-CCS
T ss_pred CHHHHHHHHhhhcccchH--HHH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HhH
Confidence 999999999988776543 222 2222222223468999999999999999999999999999999999999986 899
Q ss_pred cccccccchheecCCCcCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 008538 512 THYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWK 557 (562)
Q Consensus 512 tp~~~~~n~i~~~~g~~~~~~~~k~g~~~~li~~vv~~~~~~~~w~ 557 (562)
+|+++++|.+++|.|+++++||+|.|+|+++++.++...+.+.|||
T Consensus 404 ~p~~t~~n~i~~g~g~~~~~d~~k~G~~~~~~~~~v~~~~~~~~Wk 449 (449)
T 4f35_D 404 LPVATPPNAIVFASGHIKQSEMMRVGLYLNIACIGLLTAIAMLFWQ 449 (449)
T ss_dssp SSSSSHHHHHHCSSGGGGTHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999997
|
| >4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-17 Score=174.31 Aligned_cols=170 Identities=10% Similarity=0.093 Sum_probs=144.2
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhCC-CchhHHHHHHHHhhh
Q 008538 144 LGAVALLGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVKLFGS-SSLGLGYSLVFSEAL 222 (562)
Q Consensus 144 ~~~~all~~~~l~~~g~~~~~~v~~~~~~~~i~~~~g~~~l~~~l~~tGl~~~la~~l~~~~g~-~~~~~~~~l~~~~~~ 222 (562)
....++.+..++...|..++||+.++++|++++++.|++.++++++++|+.+++++.+....++ ++......+...+.+
T Consensus 279 ~~~val~~~~ll~~~~~l~~~~~~~~i~W~~l~~~~g~~~l~~~l~~sG~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 358 (449)
T 4f35_D 279 DTLVALGAILMLSFARVVHWKEIQKTADWGVLLLFGGGLCLSNVLKQTGTSVFLANALSDMVSHMGIFVVILVVATFVVF 358 (449)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSHHHHHHHHHTTSE
T ss_pred hHHHHHHHHHHhhhhhccchhhhhcccCchHHHHhhhHHHHhHHHHhcCCHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Confidence 3566777888888899999999999999999999999999999999999999999999877644 555666677777888
Q ss_pred hhcccCchhhhhhhhhhHhHHHHHHHcCCCCCCCcchhhhHHHHHHHHHHhhhhhcccccccchhHHHHHHHhhhcCCCc
Q 008538 223 LAPAIPSVSARAGGIFLPIVKSLCLACGSNTGDGTEHKLGSWLMLTCFQTSVISSSMFLTAMAANPLSATLTLNTINQPI 302 (562)
Q Consensus 223 ls~~~~~~~a~~~~i~~Pi~~~i~~~~g~~~~~~~~~~~~~~l~~~~~~~a~~gg~~t~iG~~~n~i~~g~l~~~~g~~i 302 (562)
++.+.+|++.++ ++.|++.+++++.|.||. .+++..+++++. +.++|+|+++|.++.|. .++
T Consensus 359 ls~f~sn~a~~~--~l~Pi~~~~a~~~g~~p~---------~~~~~~~~~~s~-~~~~p~~t~~n~i~~g~------g~~ 420 (449)
T 4f35_D 359 LTEFASNTASAA--LLIPVFATVAEAFGMSPV---------LLSVLIAVAASC-AFMLPVATPPNAIVFAS------GHI 420 (449)
T ss_dssp ETEECCHHHHHH--HHHHHHHHHHHHTTCCSH---------HHHHHHHHHHHC-CCSSSSSSHHHHHHCSS------GGG
T ss_pred HHHhccHHHHHH--HHHHHHHHHHHHcCCCHH---------HHHHHHHHHHHH-HhHhhhhhHHHHHHHhc------CCC
Confidence 999999988876 899999999999999985 566666666664 57899999999998752 358
Q ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Q 008538 303 GWMDWAKAAIVPGLVSLIVVPLLLYIIYP 331 (562)
Q Consensus 303 s~~~~~~~~~~~~li~~~~~~~~~~~~~~ 331 (562)
++.||+|.|+|.+++++++...+.+.++|
T Consensus 421 ~~~d~~k~G~~~~~~~~~v~~~~~~~~Wk 449 (449)
T 4f35_D 421 KQSEMMRVGLYLNIACIGLLTAIAMLFWQ 449 (449)
T ss_dssp GTHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999988888777776664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00