Citrus Sinensis ID: 008548

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560--

MAQKNDDARFTSSPLKIPRFQPQPPLPFFAETLTESKNSLSHQIHSLRTRSDESTQSTELTQPESLTRKLQLFAERAYGNSARVCSMYPSTTGAGETLVNLPLLCSAWMSLSQSTTSESAALPEVSSTQLQQKAQQQPHSVSRSDEERVLISEVLVRNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGLFGLVSGVEILSGGVIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTSMVDLILNVVERPSGGFSAGGGISSGITSGPLSGLIGSFVYSHRNVFGRNQKLNISLERGQIDSILRINYIDPWIEGDDKQTSRTMMVQNSRTPGPLVHRNQPDNSSQTIGRRAGSHDEKGNPIIKDFYSSPLYRKFVFDMEQGLPVLPKWLFFNRVNAHARKGVDISHARLRLNLSGGHVIGNFYPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEITFPMVCDDNPIFLSYLDKKLRIIF

cccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEcccccEEEEEEEccEEEEEEEEEcccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccEEEEcccccccccEEEEEEEEEEEccEEEEEEEccccccccccccccEEEEEccccccccccHHHHHHHHHHHHcccccccEEEEEEccccccEEEEEEEEEEccccEEEEEEEEEccccccccccEEEEEEEEEEcccccccEEEEEEEEEcEEEEEEEEEEccEEcccccccEEEEEEEEEEccccccccccccccEEEEEEEEEEEccccccccccccccccEEEEEEEEEEEEEEccccEEEEEEEEEEEEccccccEEEEEEEEEEEEEccccccccEEcccccccccccccccccccEEEEEEEEEEEccccccccEEEEEEcccEEEcc

cccccccEEEEccccccccccccccccHHHHHHHHHHccHHHHHHHccccccccccEEEEEccccHHHHHHHHHHHccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccEcccccccccHHHHHccccEEEEEEcccccEEEEEEEEEccccEEEEEcccccccHHHHHHHHHHHHccccEEcHHHHHHHHHHHHHHHHHcccEEEEEccccccccEEEEEEEEEEEEEEEEEEEEccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHccccccEEEEcccccccccEEEEEEEEEccccEEEEEEEEcccccccccccEEEEEEEEcccccccccEEEEEEEEccccEEEEEEEcccccccccccccEEEEEEEEcccccEEcccccccccccccEEEEEEccccccccccccccccccEEEEEEEEEccccccccEEEEEEEEEEEEEEccccEEEEEEEccEEEccccccHHEEccccccEccccccccccccEEEEEEEEEEcccccccEEEEHHHHHccEEEEc

maqknddarftssplkiprfqpqpplpffaETLTESKNSLSHQIHslrtrsdestqsteltqpeSLTRKLQLFAERAygnsarvcsmypsttgagetlVNLPLLCSAWMslsqsttsesaalpevsstQLQQkaqqqphsvsrsdeERVLISEVLVRNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDVNRiidggkiinirRLDEVITSINGWYMEHGLFGLVSGVEILSGGVIRLQVAEAEVNNISIRfldrktgeptkgktrpeTILRQLTTKKGQVYSMLQGKRDVETVLTMGImedvsiipqpagdtsmVDLILNVverpsggfsagggissgitsgplsglIGSFVYshrnvfgrnqKLNISlergqidsilrinyidpwiegddkqtsrtmmvqnsrtpgplvhrnqpdnssqtigrragshdekgnpiikdfyssplyrkFVFDmeqglpvlpkwlffnrvnaharkgvdisHARLRLNLsgghvignfypheafaiggtnsvrgyeegavgsgrsyvvgsgeitfpmvcddnpiflSYLDKKLRIIF

maqknddarftssplkiprfqpqPPLPFFAETLTESKNSLSHQIHslrtrsdestqsteltqpesltRKLQLFAERAYGNSARVCSMYPSTTGAGETLVNLPLLCSAWMSLSQSTTSESAALPEVSSTQLQQKaqqqphsvsrsdeervlisevlvrnkdgeeleRKYLGTEALTVLKACHansaltvrevqedvnriidggkiinirrlDEVITSINGWYMEHGLFGLVSGVEILSGGVIRLQVAEaevnnisirfldrktgeptkgktrpetilrqlttkkgqvysmlqgKRDVETVLTMGIMEDVSIIPQPAGDTSMVDLILNVVERPSGGFSAGGGISSGITSGPLSGLIGSFVYSHRNVFGRNQKLNISLERGQIDSILRINYIDPWIEGDDKQTSRTMMVQNsrtpgplvhrnqpdnssqtigrragshdekgnpiIKDFYSSPLYRKFVFDMEQGLPVLPKWLFFNRVNAHARKGVDISHARLRLNLSGGHVIGNFYPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEITFPMVCDDNPIFlsyldkklriif

MAQKNDDARFTSSPLKIprfqpqpplpffAETLTESKNSLSHQIHSLRTRSDESTQSTELTQPESLTRKLQLFAERAYGNSARVCSMYPSTTGAGETLVNLPLLCSAWMSLSQSTTSESAALPEVSSTqlqqkaqqqPHSVSRSDEERVLISEVLVRNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGLFGLVSGVEILSGGVIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTSMVDLILNVVERPsggfsagggissgitsgplsgligsFVYSHRNVFGRNQKLNISLERGQIDSILRINYIDPWIEGDDKQTSRTMMVQNSRTPGPLVHRNQPDNSSQTIGRRAGSHDEKGNPIIKDFYSSPLYRKFVFDMEQGLPVLPKWLFFNRVNAHARKGVDISHARLRLNLSGGHVIGNFYPHEAFAIGGTNSVRGYEEgavgsgrsyvvgsgEITFPMVCDDNPIFLSYLDKKLRIIF

*********************************************************************LQLFAERAYGNSARVCSMYPSTTGAGETLVNLPLLCSAWMS***************************************LISEVLVRNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGLFGLVSGVEILSGGVIRLQVAEAEVNNISIRFLD****************LRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTSMVDLILNVV***********************GLIGSFVYSHRNVFGRNQKLNISLERGQIDSILRINYIDPWIE***********************************************IIKDFYSSPLYRKFVFDMEQGLPVLPKWLFFNRVNAHARKGVDISHARLRLNLSGGHVIGNFYPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEITFPMVCDDNPIFLSYLDKKLRII*

*****************************************************************************************************************************SSTQLQ*************DEERVLISEVLVRNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGLFGLVSGVEILSGGVIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTSMVDLILNVVERPSGGFSAGGGISSGITSGPLSGLIGSFVYSHRNVFGRNQKLNISLERGQIDSILRINYIDPWIEGDDKQTSRTMMVQNSRTPGPLVHRNQPDNSSQTIGRRAGSHDEKGNPIIKDFYSSPLYRKFVFDMEQGLPVLPKWLFFNRVNAHARKGVDISHARLRLNLSGGHVIGNFYPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEITFPMVCDDNPIFLSYLDKKLRIIF

***********SSPLKIPRFQPQPPLPFFAETLTES***************************ESLTRKLQLFAERAYGNSARVCSMYPSTTGAGETLVNLPLLCSAWMSL***********************************ERVLISEVLVRNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGLFGLVSGVEILSGGVIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTSMVDLILNVVERPSGGFSAGGGISSGITSGPLSGLIGSFVYSHRNVFGRNQKLNISLERGQIDSILRINYIDPWIEGDDKQTSRTMMVQNSRTPGPLVHR*****************DEKGNPIIKDFYSSPLYRKFVFDMEQGLPVLPKWLFFNRVNAHARKGVDISHARLRLNLSGGHVIGNFYPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEITFPMVCDDNPIFLSYLDKKLRIIF

*****DDARFTSSPLKIPRFQPQPPLPFFAETLTESKNSLSHQIHSLRTRSDESTQSTELTQPESLTRKLQLFAERAYGNSARVCSMYPSTTGAGETLVNLPLLCSAWMSL*******************QQKAQQ*PHSVSRSDEERVLISEVLVRNKDGEELERKYLGTEALTVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGLFGLVSGVEILSGGVIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTSMVDLILNVVERPSGGFSAGGGISSGITSGPLSGLIGSFVYSHRNVFGRNQKLNISLERGQIDSILRINYIDPWIEGDDKQTSRTMMVQNSRTPGPLVHRNQPDNSSQTIGRRAGSHDEKGNPIIKDFYSSPLYRKFVFDMEQGLPVLPKWLFFNRVNAHARKGVDISHARLRLNLSGGHVIGNFYPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEITFPMVCDDNPIFLSYLDKKLRIIF

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		562	2.2.26 [Sep-21-2011]
Q9C5J8		732	Outer envelope protein 80	yes	no	0.950	0.729	0.567	0.0
Q6H7M7		665	Outer envelope protein 80	yes	no	0.706	0.596	0.588	1e-149
A2X208		665	Outer envelope protein 80	N/A	no	0.706	0.596	0.588	1e-149
Q43715		809	Protein TOC75, chloroplas	N/A	no	0.403	0.280	0.230	9e-10
P0C891		158	Outer envelope protein 80	N/A	no	0.186	0.664	0.297	2e-08
Q9STE8		818	Protein TOC75-3, chloropl	no	no	0.370	0.254	0.239	3e-08
Q84Q83		817	Protein TOC75, chloroplas	no	no	0.362	0.249	0.222	3e-07

>sp\|Q9C5J8\|OEP80_ARATH Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana GN=OEP80 PE=1 SV=1	Back alignment and function desciption

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/666 (56%), Positives = 429/666 (64%), Gaps = 132/666 (19%)

Query: 1   MAQKNDDARFTSSPLKIPRFQP----------QPPLPFFAETLTESKNSLSHQIHSLRTR 50
           M   NDD RF+SS ++I    P          Q     F   L+ ++NSL+  + SL+ R
Sbjct: 1   MHCHNDDVRFSSSSIRIHSPSPKEQHSLLTNLQSCSKTFVSHLSNTRNSLNQMLQSLKNR 60

Query: 51  SDESTQSTELTQPESLTRKLQLFAERAYGNSARVC-SMYPSTTGAG--------ETLVNL 101
                +S  + +P   T+ L    +   G S+ +  S+  ST            ET+  L
Sbjct: 61  HTPPPRS--VRRPNLPTQMLNSVTQLMIGKSSPISLSLIQSTQFNWSESRDENVETIRGL 118

Query: 102 --PLLCSAWMSLSQSTTSESAALPEVSSTQLQQKAQQQPHSVSRSDEERVLISEVLVRNK 159
             PLLC A +SL++   +ES    E   T  QQK     HSVSR+ EERVLISEVLVR K
Sbjct: 119 SSPLLCCASLSLTRP--NESTQSVEGKDTVQQQKG----HSVSRNAEERVLISEVLVRTK 172

Query: 160 DGEELERKYLGTEALTVLKACHANSALTVREVQEDVNRII-------------------- 199
           DGEELERK L  EAL  LKAC ANSALT+REVQEDV+RII                    
Sbjct: 173 DGEELERKDLEMEALAALKACRANSALTIREVQEDVHRIIESGYFCSCTPVAVDTRDGIR 232

Query: 200 --------------------------------DG-GKIINIRRLDEVITSINGWYMEHGL 226
                                           DG GK+INI+RL+E ITSINGWYME GL
Sbjct: 233 LMFQVEPNQEFRGLVCENANVLPSKFIHEAFRDGFGKVINIKRLEEAITSINGWYMERGL 292

Query: 227 FGLVSGVEILSGGVIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQV 286
           FG+VS ++ LSGG++RLQVAEAEVNNISIRFLDRKTGEPTKGKT PETILRQLTTKKGQV
Sbjct: 293 FGIVSDIDTLSGGIVRLQVAEAEVNNISIRFLDRKTGEPTKGKTSPETILRQLTTKKGQV 352

Query: 287 YSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTSMVDLILNVVERPSGGFSAGGGISSGIT 346
           YSMLQGKRDV+TVL MGIMEDVSIIPQPAGD+  VDLI+N VERPSGGFSAGGGISSGIT
Sbjct: 353 YSMLQGKRDVDTVLAMGIMEDVSIIPQPAGDSGKVDLIMNCVERPSGGFSAGGGISSGIT 412

Query: 347 SGPLSGLIGSFVYSHRNVFGRNQKLNISLERGQIDSILRINYIDPWIEGDDKQTSRTMMV 406
           SGPLSGLIGSF YSHRN+FGRNQKLN+SLERGQIDSI RINY DPWIEGDDK+TSR++MV
Sbjct: 413 SGPLSGLIGSFAYSHRNLFGRNQKLNVSLERGQIDSIFRINYTDPWIEGDDKRTSRSIMV 472

Query: 407 QNSRTPGPLVHRNQPDNSSQTIGR------------------------RAGSHDEKGNPI 442
           QNSRTPG LVH NQPDNSS TIGR                         AG+ DE+GNPI
Sbjct: 473 QNSRTPGNLVHGNQPDNSSLTIGRVTAGVEYSRPFRPKWNGTAGLIFQHAGARDEQGNPI 532

Query: 443 IKDFYSSPLYRK--------------------------FVFDMEQGLPVLPKWLFFNRVN 476
           IKDFYSSPL                             F F+MEQGLPVLP+WL FNRV 
Sbjct: 533 IKDFYSSPLTASGKPHDETMLAKLESIYTGSGDQGSTMFAFNMEQGLPVLPEWLCFNRVT 592

Query: 477 AHARKGVDISHARLRLNLSGGHVIGNFYPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSG 536
             ARKG+ I  AR   +LSGGHV+G F PHEAF IGGTNSVRGYEEGAVGSGRSYVVGSG
Sbjct: 593 GRARKGIHIGPARFLFSLSGGHVVGKFSPHEAFVIGGTNSVRGYEEGAVGSGRSYVVGSG 652

Query: 537 EITFPM 542
           E++FP+
Sbjct: 653 ELSFPV 658

Plays an essential role during early stages of plastid development.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q6H7M7\|OEP80_ORYSJ Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp. japonica GN=OEP80 PE=3 SV=2	Back alignment and function description

>sp\|A2X208\|OEP80_ORYSI Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp. indica GN=OEP80 PE=3 SV=1	Back alignment and function description

>sp\|Q43715\|TOC75_PEA Protein TOC75, chloroplastic OS=Pisum sativum GN=TOC75 PE=1 SV=1	Back alignment and function description

>sp\|P0C891\|OEP80_PEA Outer envelope protein 80, chloroplastic (Fragments) OS=Pisum sativum GN=OEP80 PE=1 SV=1	Back alignment and function description

>sp\|Q9STE8\|TC753_ARATH Protein TOC75-3, chloroplastic OS=Arabidopsis thaliana GN=TOC75-3 PE=1 SV=1	Back alignment and function description

>sp\|Q84Q83\|TOC75_ORYSJ Protein TOC75, chloroplastic OS=Oryza sativa subsp. japonica GN=TOC75 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		562
255544822		700	sorting and assembly machinery (sam50) p	0.928	0.745	0.603	0.0
18419973		732	outer envelope protein [Arabidopsis thal	0.950	0.729	0.567	0.0
297808025		732	hypothetical protein ARALYDRAFT_909999 [	0.939	0.721	0.568	0.0
359478392		673	PREDICTED: outer envelope protein of 80	0.868	0.725	0.563	1e-175
356547291		677	PREDICTED: outer envelope protein of 80	0.879	0.729	0.547	1e-174
357454321		672	Outer envelope protein of 80 kDa [Medica	0.871	0.729	0.550	1e-174
356557629		677	PREDICTED: outer envelope protein of 80	0.879	0.729	0.540	1e-172
224075788		682	predicted protein [Populus trichocarpa]	0.868	0.715	0.534	1e-168
224053360		512	predicted protein [Populus trichocarpa]	0.706	0.775	0.660	1e-157
449502616		757	PREDICTED: LOW QUALITY PROTEIN: outer en	0.790	0.586	0.577	1e-154

>gi\|255544822\|ref\|XP_002513472.1\| sorting and assembly machinery (sam50) protein, putative [Ricinus communis] gi\|223547380\|gb\|EEF48875.1\| sorting and assembly machinery (sam50) protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/643 (60%), Positives = 425/643 (66%), Gaps = 121/643 (18%)

Query: 4   KNDDARFTSSPLKIPRFQPQPPLPFFAETLTESKNSLSHQIHSLRTRSDESTQSTELTQP 63
           +ND  RFTSS LKIP   P       A  L+ +K S ++ I SL TRS     S  +  P
Sbjct: 3   QNDTVRFTSSSLKIPLLPPPQQQ-QQAPQLSYTKISFTNFIDSLITRSKIHI-SRSVNSP 60

Query: 64  ESLTRKLQLFAERAYGNSARVCSMYPSTTGAGETLVNLPLLCSAWMSLSQSTTSESAALP 123
             LT  L  FA  +   S          T   E+    P+LCSA +SL+Q   SE+    
Sbjct: 61  RKLTLPLLCFASLSLPQS--------KDTVISESHTQSPILCSASLSLTQPGESENIVT- 111

Query: 124 EVSSTQLQQKAQQQPHSVSRSDEERVLISEVLVRNKDGEELERKYLGTEALTVLKACHAN 183
                  QQK      S SR DEERVLISEVLVRNKDGEELERK L  EA+  LKAC AN
Sbjct: 112 -------QQKGSGGGLSGSRHDEERVLISEVLVRNKDGEELERKDLEAEAVAALKACRAN 164

Query: 184 SALTVREVQEDVNRII----------------DG-------------------------- 201
           SALTVREVQEDV+RII                DG                          
Sbjct: 165 SALTVREVQEDVHRIIDSGYFCSCTPVAVDTRDGIRLVFQVEPNQEFHGLVCEGASVLPT 224

Query: 202 -----------GKIINIRRLDEVITSINGWYMEHGLFGLVSGVEILSGGVIRLQVAEAEV 250
                      GK++NIR LD+VITSINGWYME GLFGLVSGVEILSGG++RLQVAEAEV
Sbjct: 225 KFLQDAFREGYGKVVNIRHLDDVITSINGWYMERGLFGLVSGVEILSGGILRLQVAEAEV 284

Query: 251 NNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSI 310
           NNISIRFLDRKTGEPTKGKT+PETILRQLTTKKGQVYSMLQGKRDV+TVLTMGIMEDVSI
Sbjct: 285 NNISIRFLDRKTGEPTKGKTKPETILRQLTTKKGQVYSMLQGKRDVDTVLTMGIMEDVSI 344

Query: 311 IPQPAGDTSMVDLILNVVERPSGGFSAGGGISSGITSGPLSGLIGSFVYSHRNVFGRNQK 370
           IPQPAGDT  VDL++NVVERPSGGFSAGGGISSGITSGPLSGLIGSF YSHRNVFGRNQK
Sbjct: 345 IPQPAGDTGKVDLVMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFTYSHRNVFGRNQK 404

Query: 371 LNISLERGQIDSILRINYIDPWIEGDDKQTSRTMMVQNSRTPGPLVHRNQPDNSSQTIGR 430
           LNISLERGQIDSI RINY DPWI+GDDK+TSRT+MVQNSRTPG LVH  QP NSS TIGR
Sbjct: 405 LNISLERGQIDSIFRINYTDPWIQGDDKRTSRTIMVQNSRTPGNLVHSYQPGNSSLTIGR 464

Query: 431 ------------------------RAGSHDEKGNPIIKDFYSSPLYRK------------ 454
                                    AG+HDEKGNPIIKD YSSPL               
Sbjct: 465 VTAGVEFSRPLRPKWSGTAGLIFQHAGAHDEKGNPIIKDHYSSPLTASGKTHDNMLLAKF 524

Query: 455 --------------FVFDMEQGLPVLPKWLFFNRVNAHARKGVDISHARLRLNLSGGHVI 500
                         FV ++EQGLP+ P+WLFFNRVNA ARKGV+I  A   L+LSGGHV+
Sbjct: 525 ESVYTGSGDHGSSMFVLNVEQGLPLWPEWLFFNRVNARARKGVEIGPALFLLSLSGGHVV 584

Query: 501 GNFYPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEITFPMV 543
           GNF PHEAFAIGGTNSVRGYEEGAVGS RSY VGSGEI+FP++
Sbjct: 585 GNFSPHEAFAIGGTNSVRGYEEGAVGSARSYAVGSGEISFPLM 627

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18419973|ref|NP_568378.1| outer envelope protein [Arabidopsis thaliana] gi|75168961|sp|Q9C5J8.1|OEP80_ARATH RecName: Full=Outer envelope protein 80, chloroplastic; AltName: Full=Chloroplastic outer envelope protein of 80 kDa; Short=AtOEP80; AltName: Full=Protein TOC75-V; Short=AtToc75-V gi|13430586|gb|AAK25915.1|AF360205_1 unknown protein [Arabidopsis thaliana] gi|14532858|gb|AAK64111.1| unknown protein [Arabidopsis thaliana] gi|332005348|gb|AED92731.1| outer envelope protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297808025\|ref\|XP_002871896.1\| hypothetical protein ARALYDRAFT_909999 [Arabidopsis lyrata subsp. lyrata] gi\|297317733\|gb\|EFH48155.1\| hypothetical protein ARALYDRAFT_909999 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|359478392\|ref\|XP_002285507.2\| PREDICTED: outer envelope protein of 80 kDa, chloroplastic [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356547291\|ref\|XP_003542049.1\| PREDICTED: outer envelope protein of 80 kDa, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|357454321\|ref\|XP_003597441.1\| Outer envelope protein of 80 kDa [Medicago truncatula] gi\|355486489\|gb\|AES67692.1\| Outer envelope protein of 80 kDa [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356557629\|ref\|XP_003547118.1\| PREDICTED: outer envelope protein of 80 kDa, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|224075788\|ref\|XP_002304768.1\| predicted protein [Populus trichocarpa] gi\|222842200\|gb\|EEE79747.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224053360\|ref\|XP_002297781.1\| predicted protein [Populus trichocarpa] gi\|222845039\|gb\|EEE82586.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449502616\|ref\|XP_004161694.1\| PREDICTED: LOW QUALITY PROTEIN: outer envelope protein 80, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		562
TAIR\|locus:2183164		732	OEP80 "outer envelope protein	0.411	0.315	0.754	3.7e-155
TAIR\|locus:2081423		362	AT3G44160 "AT3G44160" [Arabido	0.172	0.267	0.408	1.1e-15
TAIR\|locus:2102767		818	TOC75-III "translocon at the o	0.448	0.308	0.215	2e-10

TAIR\|locus:2183164 OEP80 "outer envelope protein of 80 kDa" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 900 (321.9 bits), Expect = 3.7e-155, Sum P(4) = 3.7e-155
 Identities = 175/232 (75%), Positives = 191/232 (82%)

Query:   200 DG-GKIINIRRLDEVITSINGWYMEHGLFGLVSGVEILSGGVIRLQVAEAEVNNISIRFL 258
             DG GK+INI+RL+E ITSINGWYME GLFG+VS ++ LSGG++RLQVAEAEVNNISIRFL
Sbjct:   265 DGFGKVINIKRLEEAITSINGWYMERGLFGIVSDIDTLSGGIVRLQVAEAEVNNISIRFL 324

Query:   259 DRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDT 318
             DRKTGEPTKGKT PETILRQLTTKKGQVYSMLQGKRDV+TVL MGIMEDVSIIPQPAGD+
Sbjct:   325 DRKTGEPTKGKTSPETILRQLTTKKGQVYSMLQGKRDVDTVLAMGIMEDVSIIPQPAGDS 384

Query:   319 SMVDLILNVVERPXXXXXXXXXXXXXXXXXXXXXXXXXFVYSHRNVFGRNQKLNISLERG 378
               VDLI+N VERP                         F YSHRN+FGRNQKLN+SLERG
Sbjct:   385 GKVDLIMNCVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNLFGRNQKLNVSLERG 444

Query:   379 QIDSILRINYIDPWIEGDDKQTSRTMMVQNSRTPGPLVHRNQPDNSSQTIGR 430
             QIDSI RINY DPWIEGDDK+TSR++MVQNSRTPG LVH NQPDNSS TIGR
Sbjct:   445 QIDSIFRINYTDPWIEGDDKRTSRSIMVQNSRTPGNLVHGNQPDNSSLTIGR 496

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0019867 "outer membrane" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0010207 "photosystem II assembly" evidence=RCA

TAIR\|locus:2081423 AT3G44160 "AT3G44160" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2102767 TOC75-III "translocon at the outer envelope membrane of chloroplasts 75-III" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C5J8	OEP80_ARATH	No assigned EC number	0.5675	0.9501	0.7295	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		562
COG4775		766	COG4775, COG4775, Outer membrane protein/protectiv	4e-27
TIGR00992		718	TIGR00992, 3a0901s03IAP75, chloroplast envelope pr	4e-24
TIGR03303		741	TIGR03303, OM_YaeT, outer membrane protein assembl	6e-18
pfam01103		317	pfam01103, Bac_surface_Ag, Surface antigen	1e-17
TIGR00992		718	TIGR00992, 3a0901s03IAP75, chloroplast envelope pr	5e-11
PLN03138		796	PLN03138, PLN03138, Protein TOC75; Provisional	7e-08
COG0729		594	COG0729, COG0729, Outer membrane protein [Cell env	1e-07
PLN03138		796	PLN03138, PLN03138, Protein TOC75; Provisional	2e-04
pfam07244		78	pfam07244, Surf_Ag_VNR, Surface antigen variable n	0.001

>gnl\|CDD\|227116 COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

 Score =  115 bits (291), Expect = 4e-27
 Identities = 85/412 (20%), Positives = 142/412 (34%), Gaps = 87/412 (21%)

Query: 202 GKIINIRRLDEVITSINGWYMEHG-LFGLVSGVEI--LSGGVIRLQV-----AEAEVNNI 253
           GK+ N +++++    I   Y  +G  F  VS           + +           V  I
Sbjct: 290 GKLFNRKKIEDDADKIKERYARYGYAFANVSPQPDANDENKTVDVVFRVDEGDRVYVRRI 349

Query: 254 SIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQ 313
            IR   R         T+   I R++  K+G V++    +R    +  +G  E V+I   
Sbjct: 350 RIRGNTR---------TKDYVIRREMRLKEGDVFNRKLVQRGKRRLRRLGYFESVNIDTA 400

Query: 314 PAGDTSMVDLILNVVERPSGGFSAGGGISSGITSGPLSGLIGSFVYSHRNVFGRNQKLNI 373
           P   +  VD++++V ER +G  + G G  S       SGL G    S RN  G  Q L++
Sbjct: 401 PGSGSDQVDVVVDVKERSTGSINFGLGYGSD------SGLSGFASLSERNFLGTGQSLSL 454

Query: 374 SLERGQIDSILRINYIDPWIEGDDKQTSRTMMV--QNSRTPGPLVHRNQPDNSSQ----T 427
           +   G   +   +++ DP+    D + S    +      T       +     +     +
Sbjct: 455 NANLGDKQTSYSLSFTDPY--FLDDRVSLGFNLFSNRYDTFDADTANDSYRVKTYGGGVS 512

Query: 428 IGR---RAGSH----------DEKGNPIIKDFYSSPLYR-----KFVFDMEQGL------ 463
           +GR      S               N    D Y+S   +       +  +  G       
Sbjct: 513 LGRPITENLSLGLGYGYEQNSLSLLNKSPPDEYASLGVKLQGGKSDLSSLSLGWTYDTRD 572

Query: 464 -PVLPK--WLF--------------FNRVNAHARK--GVDISHARLRLNLSGGHVIG--- 501
             + P                    + ++     K   +      L L    G+  G   
Sbjct: 573 NALFPTKGSYLSLTQEVAGLGGDIKYYKLELDGSKYYPLTDYIFTLSLRGEVGYGKGYGT 632

Query: 502 -NFYPHEAFAIGGTNSVRGYEEGAVGS---------GRSYVVGSGEITFPMV 543
                +E F +GG+NSVRG+E G +G          G SY V S E+ FP+ 
Sbjct: 633 KLLPIYERFYLGGSNSVRGFESGGLGPKDGYTDALGGTSYFVASAELRFPLP 684

Length = 766

>gnl\|CDD\|130065 TIGR00992, 3a0901s03IAP75, chloroplast envelope protein translocase, IAP75 family	Back alignment and domain information

>gnl\|CDD\|234165 TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein	Back alignment and domain information

>gnl\|CDD\|216300 pfam01103, Bac_surface_Ag, Surface antigen	Back alignment and domain information

>gnl\|CDD\|130065 TIGR00992, 3a0901s03IAP75, chloroplast envelope protein translocase, IAP75 family	Back alignment and domain information

>gnl\|CDD\|215598 PLN03138, PLN03138, Protein TOC75; Provisional	Back alignment and domain information

>gnl\|CDD\|223801 COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|215598 PLN03138, PLN03138, Protein TOC75; Provisional	Back alignment and domain information

>gnl\|CDD\|219346 pfam07244, Surf_Ag_VNR, Surface antigen variable number repeat	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		562
PLN03138		796	Protein TOC75; Provisional	100.0
TIGR00992		718	3a0901s03IAP75 chloroplast envelope protein transl	100.0
COG4775		766	Outer membrane protein/protective antigen OMA87 [C	100.0
PRK11067		803	outer membrane protein assembly factor YaeT; Provi	100.0
TIGR03303		741	OM_YaeT outer membrane protein assembly complex, Y	100.0
COG2831		554	FhaC Hemolysin activation/secretion protein [Intra	100.0
COG0729		594	Outer membrane protein [Cell envelope biogenesis,	99.98
PF03865		404	ShlB: Haemolysin secretion/activation protein ShlB	99.88
PF01103		323	Bac_surface_Ag: Surface antigen; InterPro: IPR0001	99.74
KOG2602		457	consensus Predicted cell surface protein homologou	99.74
COG4775		766	Outer membrane protein/protective antigen OMA87 [C	99.45
PRK11067		803	outer membrane protein assembly factor YaeT; Provi	99.43
TIGR03303		741	OM_YaeT outer membrane protein assembly complex, Y	99.36
PF08479		76	POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013	98.87
PF07244		78	Surf_Ag_VNR: Surface antigen variable number repea	98.67
PF07244		78	Surf_Ag_VNR: Surface antigen variable number repea	98.59
PLN03138		796	Protein TOC75; Provisional	98.45
TIGR00992		718	3a0901s03IAP75 chloroplast envelope protein transl	98.31
PF08478		69	POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013	87.64
PF08479		76	POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013	85.53
PRK05529		255	cell division protein FtsQ; Provisional	83.91

>PLN03138 Protein TOC75; Provisional	Back alignment and domain information

Probab=100.00  E-value=1.8e-49  Score=440.79  Aligned_cols=375  Identities=22%  Similarity=0.371  Sum_probs=300.6

Q ss_pred             eecCccCCHhHHHHHhhhhcCC-----------------------------CCcccHHHHHHHHHHHHHHHHHCCC-ceE
Q 008548          180 CHANSALTVREVQEDVNRIIDG-----------------------------GKIINIRRLDEVITSINGWYMEHGL-FGL  229 (562)
Q Consensus       180 ~~GN~~~~~~eL~~~l~~~~~~-----------------------------G~~f~~~~l~~~~~~L~~~Y~~~GY-~a~  229 (562)
                      |+||..++++||++.+..  ++                             ...|+.++|++++++|+++|.++|| +++
T Consensus       246 ~~GN~~fs~~el~~~~~~--~e~~~~~~~~~a~~~~Lp~~v~~e~f~~~~~~gklN~e~Lq~die~I~~~Y~d~GYafa~  323 (796)
T PLN03138        246 IEMDEDMTDKEKMEYYRS--QEKDYKRRIRKARPCLLPKSVRREVLGMLRDQGKVSARLLQRIRDRVQKWYHDEGYACAQ  323 (796)
T ss_pred             eeCCcccCHHHHHHHhhc--cccccccccccccccccchHHHHHHHhhhccCCcCCHHHHHHHHHHHHHHHHhCCCceEE
Confidence            899999999999888876  22                             2259999999999999999999999 899


Q ss_pred             EEeEEEecCcEEEEEEEEEEEeeEEEEecccCCCCCCCCCCCHHHHHhhcc--ccCCCccchHHHHHHHHHHHhCCCcee
Q 008548          230 VSGVEILSGGVIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLT--TKKGQVYSMLQGKRDVETVLTMGIMED  307 (562)
Q Consensus       230 V~~~~~~~dg~l~i~I~Eg~I~~I~i~G~~~~~Gn~~~~~t~~~~I~r~l~--lk~G~~yn~~~le~~~~~L~~lG~F~~  307 (562)
                      |.+....+++.|+++|.||+|..|+|.+++ +.|++++.+|++.+|+|+|+  ++||++||..++++++++|+++|+|++
T Consensus       324 V~~~~~id~g~Vtl~V~EG~i~~I~V~~~d-rig~~i~GNTrD~VIRREL~~~lkeGd~fN~~~l~~slqRL~~LGlFed  402 (796)
T PLN03138        324 VVNFGNLNTNEVVCEVVEGDITKVVIQFQD-KLGNVVEGNTQLPIIDRELPKQLRQGHIFNIEAGKQALRNINSLALFSN  402 (796)
T ss_pred             EecccccCCceEEEEEecccEEEEEEEecc-cccccccCCccCeEEeeecccccCCCcccCHHHHHHHHHHHHhCCCCce
Confidence            998766667889999999999999998765 24666667889999999997  599999999999999999999999999


Q ss_pred             eEEeeecC-CCCCeeEEEEEEEEcC--CceEEEeeeecCCCCCC---CccceEEEEEEEEecCCCCCcEEEEEEEE----
Q 008548          308 VSIIPQPA-GDTSMVDLILNVVERP--SGGFSAGGGISSGITSG---PLSGLIGSFVYSHRNVFGRNQKLNISLER----  377 (562)
Q Consensus       308 V~i~~~~~-~~~g~vdl~i~V~E~~--~~~~~~g~g~ss~~~~~---~~~G~~~~~~l~~~NlfG~g~~ls~s~~~----  377 (562)
                      |++.+.|+ ..++.++|.|+|+|.+  .+.++++.+|+.+....   ...++.++++|+++||+|+|++|.++++.    
T Consensus       403 V~V~~~Pg~~~p~~VdL~V~VkE~e~~t~~ls~g~g~~~G~g~~Psl~S~g~~Gtvs~~~~NL~G~g~~L~~~v~~s~~~  482 (796)
T PLN03138        403 IEVNPRPDEKNEGGIVVEIKLKELEPKSAEVSTEWSIVPGRGGRPTLASIQPGGTVSFEHRNIQGLNRSILGSVTSSNLL  482 (796)
T ss_pred             eEEEeccCCCCCCeEEEEEEEEEccCCceeEecccccccccCCCCccccccceeEEEEeccccccccceEEEEEEeeccc
Confidence            99999886 4679999999999944  45566666654321000   12567899999999999999999999988    


Q ss_pred             -cceeeEEEEEEEcCCcCC--CCcceEEEEEEEEeecCCCceeee---------------------ecC--cceEEEEEE
Q 008548          378 -GQIDSILRINYIDPWIEG--DDKQTSRTMMVQNSRTPGPLVHRN---------------------QPD--NSSQTIGRR  431 (562)
Q Consensus       378 -g~~~~~~~lsy~~P~~~~--~~~~~s~~~s~~~s~~~g~~~~~g---------------------~~~--~~~lslg~~  431 (562)
                       ++....++++|++||+.+  ++.++++++++|++++....+.++                     .+.  .+.++++..
T Consensus       483 ~g~~d~~f~lsytdPWi~g~~d~~rts~~~~~f~~r~~s~vf~~~~~~~~~~~~~~~R~G~~~~~~rp~~~~~~~s~g~~  562 (796)
T PLN03138        483 NPQDDLSFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVPPIWVDRAGFKANITENFTRQSKFTYGLV  562 (796)
T ss_pred             CCccceEEEEEeecccccCCCCcccccEEEEEEecCcCCceeeCCCCcccCCcceEeecccceEeecccCCCCceEEEEE
Confidence             457789999999999987  566689999999987644322111                     011  111233332


Q ss_pred             E---eeecCCCCcee------------------------------------eccc----cCCeeEEEEEEEeccccCCCC
Q 008548          432 A---GSHDEKGNPII------------------------------------KDFY----SSPLYRKFVFDMEQGLPVLPK  468 (562)
Q Consensus       432 ~---~~~d~~g~~~~------------------------------------~d~~----~~~l~~~~~~~~e~Gl~~~~~  468 (562)
                      +   ..+|+.|+...                                    +|..    ++..+..+.+++||+++++.+
T Consensus       563 ~q~v~~~d~~g~~~~~~~~~~~~~~~~~~g~plT~S~~g~D~l~~~~~~~trd~~~~~~~pt~G~~~~~~~EQ~lpvg~~  642 (796)
T PLN03138        563 VEEITTRDETSHICTHGQRVLPSGGLSADGPPTTLSGTGIDRMAFLQANITRDNTKFVNGAVVGDRHIFQVDQGLGIGSK  642 (796)
T ss_pred             EEEEEeecCCCCccccccccccccccccCCCceeeccCCcchhhheeeeeEeccCCCCCCCCccceEEEEeeeeccccCC
Confidence            2   23444433211                                    0111    122334667888999999888


Q ss_pred             ccceEEEEEEEEEEEEc----------cCceEEEEeeeeeeccCCCccCceecCCCCcccCccCCCccccceEEEEEEEE
Q 008548          469 WLFFNRVNAHARKGVDI----------SHARLRLNLSGGHVIGNFYPHEAFAIGGTNSVRGYEEGAVGSGRSYVVGSGEI  538 (562)
Q Consensus       469 ~~~f~k~~~~~~~~~~l----------~~~~l~lr~~~G~i~g~lP~~E~F~lGG~~SVRGY~~~~igpG~~~~~~s~E~  538 (562)
                      +..|+|+.+++++|+|+          .+.+|++++++|++.|+||++|+|.+||.+|||||.++++|.|++++++++||
T Consensus       643 ~~~fNR~~~~~s~fipv~~~~~~~~~~~Pq~la~~~~aG~~~GdLPpYEAF~LGG~nSVRGY~eG~lg~gRs~l~asaEy  722 (796)
T PLN03138        643 FPFFNRHQLTVTKFIQLNKVEKGAGKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILEVAAEL  722 (796)
T ss_pred             CCceEEEEEEEEEEEeeccccccccCCCCcEEEEEEeccceecCCCcHHhcccCCCCcccCcccCcccccceeEEEEEEE
Confidence            99999999999999998          14789999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCc-eEEEeccccce
Q 008548          539 TFPMVCDDN-PIFLSYLDKKL  558 (562)
Q Consensus       539 r~pl~~~~~-~~F~D~G~v~~  558 (562)
                      |+||. .+. ++|+|+|+.|-
T Consensus       723 RfPi~-~~~g~~F~D~GsdLg  742 (796)
T PLN03138        723 RIPVR-NTHVYAFAEHGTDLG  742 (796)
T ss_pred             Eeeec-cceEEEEEEeccccC
Confidence            99994 467 99999999873

>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family	Back alignment and domain information

>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK11067 outer membrane protein assembly factor YaeT; Provisional	Back alignment and domain information

>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein	Back alignment and domain information

>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	Back alignment and domain information

>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF03865 ShlB: Haemolysin secretion/activation protein ShlB/FhaC/HecB; InterPro: IPR005565 Haemolysin (HlyA) and related toxins are secreted across both the cytoplasmic and outer membranes of Gram-negative bacteria in a process which proceeds without a periplasmic intermediate	Back alignment and domain information

>PF01103 Bac_surface_Ag: Surface antigen; InterPro: IPR000184 The protein sequences of d15 from various strains of Haemophilus influenzae are highly conserved, with only a small variable region identified near the carboxyl terminus of the protein []	Back alignment and domain information

>KOG2602 consensus Predicted cell surface protein homologous to bacterial outer membrane proteins [General function prediction only]	Back alignment and domain information

>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK11067 outer membrane protein assembly factor YaeT; Provisional	Back alignment and domain information

>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein	Back alignment and domain information

>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO)	Back alignment and domain information

>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus	Back alignment and domain information

>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus	Back alignment and domain information

>PLN03138 Protein TOC75; Provisional	Back alignment and domain information

>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family	Back alignment and domain information

>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain)	Back alignment and domain information

>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO)	Back alignment and domain information

>PRK05529 cell division protein FtsQ; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		562
2x8x_X		235	Structure Of The N-Terminal Domain Of Omp85 From Th		8e-17
3mc8_A		316	Potra1-3 Of The Periplasmic Domain Of Omp85 From An		3e-16

>pdb|2X8X|X Chain X, Structure Of The N-Terminal Domain Of Omp85 From The Thermophilic Cyanobacterium Thermosynechococcus Elongatus Length = 235

Back alignment and structure

Iteration: 1

Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 89/161 (55%), Gaps = 11/161 (6%) Query: 176 VLKACH--ANSALTVREVQEDVNRIIDG--GKIINIRRLDEVITSINGWYMEHG-LFGLV 230 VL+A N LT QE VN I G+ +N+R L I IN +Y ++G + G V Sbjct: 78 VLRAVQVAGNQVLT----QEKVNEIFAPQIGRTLNLRELQAGIEKINTFYRDNGYILGQV 133 Query: 231 SGV-EILSGGVIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSM 289 G ++ GV+ LQVAE V ++ RFL+ K GEPTK +TR I R++ T+ G V + Sbjct: 134 VGTPQVDPDGVVTLQVAEGVVEQVTYRFLN-KEGEPTKQRTRDFVISREMDTQPGVVLNQ 192 Query: 290 LQGKRDVETVLTMGIMEDVSIIPQPAGDTSMVDLILNVVER 330 + D+ + +G+ EDV + +P + V+LILN+ ER Sbjct: 193 KTVQADLRRLFELGLFEDVQVALEPGQNPRRVNLILNIKER 233

PyMOL of 2x8x

>pdb|3MC8|A Chain A, Potra1-3 Of The Periplasmic Domain Of Omp85 From Anabaena Length = 316

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		562
2x8x_X		235	TLR1789 protein, OMP85; chaperone, TOC75, protein	2e-24
3mc9_A		316	ALR2269 protein; polypeptide transport associated,	1e-21
3mc9_A		316	ALR2269 protein; polypeptide transport associated,	1e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
2qdz_A		554	TPSB transporter FHAC; beta barrel, potra domain,	4e-13
3q6b_A		189	Outer membrane protein assembly complex, YAET Pro;	8e-05

>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus} Length = 235	Back alignment and structure

 Score =  100 bits (252), Expect = 2e-24
 Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 5/152 (3%)

Query: 183 NSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHG-LFGLVSGV-EILSGGV 240
           N  LT  +V E        G+ +N+R L   I  IN +Y ++G + G V G  ++   GV
Sbjct: 87  NQVLTQEKVNEIFA--PQIGRTLNLRELQAGIEKINTFYRDNGYILGQVVGTPQVDPDGV 144

Query: 241 IRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVL 300
           + LQVAE  V  ++ RFL++  GEPTK +TR   I R++ T+ G V +    + D+  + 
Sbjct: 145 VTLQVAEGVVEQVTYRFLNK-EGEPTKQRTRDFVISREMDTQPGVVLNQKTVQADLRRLF 203

Query: 301 TMGIMEDVSIIPQPAGDTSMVDLILNVVERPS 332
            +G+ EDV +  +P  +   V+LILN+ ER +
Sbjct: 204 ELGLFEDVQVALEPGQNPRRVNLILNIKERNT 235

PyMOL of 2x8x

>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A Length = 316	Back alignment and structure

>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A Length = 316	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A Length = 554	Back alignment and structure

>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A Length = 189	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		562
2qdz_A		554	TPSB transporter FHAC; beta barrel, potra domain,	100.0
3q6b_A		189	Outer membrane protein assembly complex, YAET Pro;	99.82
2x8x_X		235	TLR1789 protein, OMP85; chaperone, TOC75, protein	99.78
3mc9_A		316	ALR2269 protein; polypeptide transport associated,	99.77
2qdf_A		335	OMP85, outer membrane protein assembly factor YAET	99.63
3efc_A		395	OMP85, outer membrane protein assembly factor YAET	99.55
2qdf_A		335	OMP85, outer membrane protein assembly factor YAET	99.54
3efc_A		395	OMP85, outer membrane protein assembly factor YAET	99.49
3mc9_A		316	ALR2269 protein; polypeptide transport associated,	99.1
2x8x_X		235	TLR1789 protein, OMP85; chaperone, TOC75, protein	98.94
3q6b_A		189	Outer membrane protein assembly complex, YAET Pro;	97.44
2qdz_A		554	TPSB transporter FHAC; beta barrel, potra domain,	96.33

>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A	Back alignment and structure

Probab=100.00  E-value=6.8e-39  Score=354.75  Aligned_cols=369  Identities=13%  Similarity=0.053  Sum_probs=272.4

Q ss_pred             hhcccceeecCccCCHhHHHHHhhhhcCCCCcccHHHHHHHHHHHHHHHHHCCC-ceEEEeE-EEecCcEEEEEEEEEEE
Q 008548          173 ALTVLKACHANSALTVREVQEDVNRIIDGGKIINIRRLDEVITSINGWYMEHGL-FGLVSGV-EILSGGVIRLQVAEAEV  250 (562)
Q Consensus       173 ~i~~I~~~~GN~~~~~~eL~~~l~~~~~~G~~f~~~~l~~~~~~L~~~Y~~~GY-~a~V~~~-~~~~dg~l~i~I~Eg~I  250 (562)
                      .+..| .|+||+.+++++|++++..  ++|++|+.++|++++++|+++|+++|| +++|... +...+++|+|.|.||+|
T Consensus        60 ~i~~I-~~~G~~~~~~~~l~~~~~~--~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~g~l~i~v~eG~i  136 (554)
T 2qdz_A           60 TVHAV-DLDFGVEGRLFDPAPLVQD--YLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPGVVDGVLKLKVEWGRI  136 (554)
T ss_dssp             SSCCE-EEECCSSSCCCSCSTTSTT--SSSSCBCSTTHHHHHHHHHHHHHHTTCTTCEEEEEEEEEETTEEEEEEECCEE
T ss_pred             EEEEE-EEECCccCCHHHHHHHhHh--hcCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEcccccccCCEEEEEEEeEEE
Confidence            46667 4888888899999888886  899999999999999999999999999 8998754 34577899999999999


Q ss_pred             eeEEEEecccCCCCCCCCCCCHHHHHh---hccccCCCccchHHHHHHHHHHHhCCCceeeEEeeecCCCCCeeEEEEEE
Q 008548          251 NNISIRFLDRKTGEPTKGKTRPETILR---QLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTSMVDLILNV  327 (562)
Q Consensus       251 ~~I~i~G~~~~~Gn~~~~~t~~~~I~r---~l~lk~G~~yn~~~le~~~~~L~~lG~F~~V~i~~~~~~~~g~vdl~i~V  327 (562)
                      ++|.|.|      +   .++++.+|++   ++++++|++||.++|++++++|++++  .+|++.+.|+.++++++|+|.|
T Consensus       137 ~~I~i~G------~---~~~~~~~l~~~~~~~~~~~G~~~n~~~le~~~~~L~~~~--~~v~~~~~p~~~~g~~~l~v~v  205 (554)
T 2qdz_A          137 KGWLIDG------K---PLEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGG--KTGNITIVPADEYGYSYLDLQL  205 (554)
T ss_dssp             EEEEETT------E---ECCSHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCSSS--EEEEEEEEECSSTTEEEEEEEE
T ss_pred             EEEEECC------C---CccchhhhhhhhhhccccCCCcCCHHHHHHHHHHHhcCc--hhceEEEecCCCCCeeEEEEEE
Confidence            9999984      4   4778999999   99999999999999999999999999  7799999888778999999999


Q ss_pred             EEcCCceEEEeeeecCCCCCCCccceEEEEEEEEecCCCCCcEEEEEEEEcc-------eeeEEEEEEEcCCcCCCCcce
Q 008548          328 VERPSGGFSAGGGISSGITSGPLSGLIGSFVYSHRNVFGRNQKLNISLERGQ-------IDSILRINYIDPWIEGDDKQT  400 (562)
Q Consensus       328 ~E~~~~~~~~g~g~ss~~~~~~~~G~~~~~~l~~~NlfG~g~~ls~s~~~g~-------~~~~~~lsy~~P~~~~~~~~~  400 (562)
                      +|+++..+.++++....++ ..+.++++.+++.++|+||.|++|++++..+.       ..+.+.++|+.||...   .+
T Consensus       206 ~e~~~~~~~~g~~~~g~g~-~~tg~~~~~~~~~~~n~~g~gd~l~~~~~~~~~~~~~~~~~~~~~~~y~~P~~~~---~~  281 (554)
T 2qdz_A          206 QRRALPRVSLGMDNSGPGT-PENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVPLGRT---RL  281 (554)
T ss_dssp             EECCSCEEEEEEEECSCSS-SCSSCEEEEEEEEEECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEEEETTE---EE
T ss_pred             eeCCcEEEEEEEcCCCCCC-CCccceEEEEEEEeCCCCCCCcEEEEEEEecCccccCCCCceEEEEEEEEEEecC---eE
Confidence            9988765555544322001 01245899999999999999999999999985       6789999999998742   23


Q ss_pred             EEEEEEEEeec--CCC----cee---------eeec----CcceEEEEEEEeeecC----CCCce-eeccccCCeeE---
Q 008548          401 SRTMMVQNSRT--PGP----LVH---------RNQP----DNSSQTIGRRAGSHDE----KGNPI-IKDFYSSPLYR---  453 (562)
Q Consensus       401 s~~~s~~~s~~--~g~----~~~---------~g~~----~~~~lslg~~~~~~d~----~g~~~-~~d~~~~~l~~---  453 (562)
                      ++.+++.+.+.  .+.    ...         .+++    ..+.+++++.+.+.+.    .+..+ ..+.....+.+   
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (554)
T 2qdz_A          282 DLQTGYSTYRNLLKTRYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTRLDVSSKHYSDVTVGMQ  361 (554)
T ss_dssp             EEEEEEEEEECCCSSSSCCCCCEEEEEEEEEEEEEEEECCSSEEEEEEEEEEEEEEEEECCTTSCCCEEEEEEEEEEEEE
T ss_pred             EEEEEEeEEEEEccCCcceEEEEeeEEEEEEEEEEEEEECCCeEEEEEEEEEEEEeeeeeCCcCccccCceEEEEEEEEE
Confidence            33333333221  110    000         1111    1233333333222110    01100 00000111111   


Q ss_pred             ----------EEEEEEeccccC----------CCCccceEEEEEEEEEEEEc---c-CceEEEEeeeeeeccCCCccCce
Q 008548          454 ----------KFVFDMEQGLPV----------LPKWLFFNRVNAHARKGVDI---S-HARLRLNLSGGHVIGNFYPHEAF  509 (562)
Q Consensus       454 ----------~~~~~~e~Gl~~----------~~~~~~f~k~~~~~~~~~~l---~-~~~l~lr~~~G~i~g~lP~~E~F  509 (562)
                                ...++...|+.+          ..++..|.|+.+++++++++   + ++++.+++.+|+..+++|++|+|
T Consensus       362 ~~~~~~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~~f~k~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~lp~~e~f  441 (554)
T 2qdz_A          362 YSTQRGANAYFGDLSFTRGVGVNNGKYAAYDERGPQGNVSRFNGSLAWTRYMALAGQPIQWASQLGFQYSRQQLLNSYQI  441 (554)
T ss_dssp             EEEECSSEEEEEEEEEEECCCC--------------CCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEECSSCSSSSEEC
T ss_pred             EEEEecCeEEEEEEEEEecCCCCCCcCcccccCCCcceEEEEEEEEEEEEEccccCCCEEEEEEEEeEecCCCCCcHHhE
Confidence                      222223334321          12467999999999999996   3 47788888888887789999999


Q ss_pred             ecCCCCcccCccCCCccccceEEEEEEEEEEec-----C--CCCc-eEEEecccccee
Q 008548          510 AIGGTNSVRGYEEGAVGSGRSYVVGSGEITFPM-----V--CDDN-PIFLSYLDKKLR  559 (562)
Q Consensus       510 ~lGG~~SVRGY~~~~igpG~~~~~~s~E~r~pl-----~--~~~~-~~F~D~G~v~~~  559 (562)
                      ++||.+|||||++++++||+.++.+++|||||+     .  ..+. ++|+|+|++|..
T Consensus       442 ~lGG~~sVRGy~~~~l~pGd~g~~~~~El~~~~~~~~~~~~~~~~~~~F~D~G~v~~~  499 (554)
T 2qdz_A          442 TVGDEYTVRGYNLRTSQSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVGADVGALKSN  499 (554)
T ss_dssp             CSCCCCCCTTCCCCCSCCSSCSSCCEESEEEEEEEEEEECCSSCEEEEEEEEEEEECS
T ss_pred             ecCCCCeECCcccccccCCCccEEEEEEEEeeccccccCccceEEEEEEEEEEEEecC
Confidence            999999999999999999999999999999996     2  2466 999999999964

PyMOL of 2qdz

>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A	Back alignment and structure

>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}	Back alignment and structure

>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A	Back alignment and structure

>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A	Back alignment and structure

>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}	Back alignment and structure

>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A	Back alignment and structure

>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}	Back alignment and structure

>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A	Back alignment and structure

>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}	Back alignment and structure

>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A	Back alignment and structure

>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00