Citrus Sinensis ID: 008562

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-
MANETEDAPTNSASESHATSADVERNPTDEDKNEKLLNDAVQFLPTDAVKDLLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVLGEQADLHQNISSVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMNCFLTE
cccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHcccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHccHHHHHHHHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcHHHHHHHccccccccEEEEEEEEEcHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccEEEEEEEEccccccccccccccccccccccHHHHHHHHHHcccccccEEEEcccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHcccccEEEEEEEEEccccHHHHHcccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHccEEEcccccEEEEEccccccEEEEEEEEEEEEcccccEEEEEEEcccccEEEEEcccccccccccHHHHcccccEEEEEEEEEEEccccccc
ccccccccccccccccEEccccHccccccccHHHHHHHHHHHHccHHHHHHHHHccccHHEEEEEEcccccHHccccHHHHHHHHcccccccccccccccccccEEEHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccEEEEEEEccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEEEccccHHHHHHHHHccHHHHHHHHHcccccccccccccHHHHHHHHHcHHHccHHHHHHcccccccccccccEccccccccEEEEEEEEEEccEEEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHccccEEEEcccccccEEEEccccccEEEEEcccccccccHHHHHHHHHHHHcccccEEEEEcEEccHHHHHHHHccccHccEEEEEEEEEcccccHHHHHHHHHHHHHHcccEEEEccccEHHccccccccEEEEEEEEEEEEcccccEEEEEEEEcccEEEEEEEccccccccccHHHHHccccEEEEEEEEEEEHHHHHcc
manetedaptnsaseshatsadvernptdedkneKLLNDAVQFLPTDAVKDLLSKEVCLRCIFRlfgmqvpicsslSVKSLLCHVLGeqadlhqnissvepnicrsclgilqftycgdkervvenesACDFAVAIAELVKKeghqidsfslevsmpptilenenKLSLYVKRKYrseawfkdrsisecssTKDALKFALTnpletlldvkcgistFHIRLTYSRVEASIRIQNFVEKIEgckrrkvdakncldtvkdksaitgveNSVVSttevipvdekssnglqdnepsethefplkkvnepcrleclcfrtpiyfggrylkysrnvsqtrWIIDEERMGEASIEeiiggnilpmcrgdsykfhaagredidvrmlgsgrpflFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWIsrplqdedfQTISSLKETVRCYQILqktpirvlhrrsplerEKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKefvhgdlgrtnpsigsiLGCRAEILQLDVTDVKMNCFLTE
manetedaptnsaseshatsadvernptdedkneKLLNDAVQFLPTDAVKDLLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVLGEQADLHQNISSVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDsfslevsmpptilenenKLSLYVKRKYrseawfkdrsisecsstKDALKFALTNPLETLLDVKCGISTFHIRLTYSRVEASIRIQNfvekiegckrrkvdakncldtvkdksaitgvensvvsttevipvdekssnglqdnepsethefplkkvnepcRLECLCFRTPiyfggrylkysrnvSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINslenklvrvknlKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQIlqktpirvlhrrsplerekiINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMNCFLTE
MANETEDAPTNSASESHATSADVERNPTDEDKNEKLLNDAVQFLPTDAVKDLLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVLGEQADLHQNISSVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMNCFLTE
************************************LNDAVQFLPTDAVKDLLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVLGEQADLHQNISSVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVS*****************************KVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMNCFL**
************************************LNDAVQFLPTDAVKDLLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCH******************ICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGISTFHIRLTYSRVEASIRIQNFVE**E***R*******************************IPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMNCFL**
*****************************EDKNEKLLNDAVQFLPTDAVKDLLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVLGEQADLHQNISSVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVD***************HEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMNCFLTE
***************************TDEDKNEKLLNDAVQFLPTDAVKDLLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVLG**********SVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMNCFLTE
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MANETEDAPTNSASESHATSADVERNPTDEDKNEKLLNDAVQFLPTDAVKDLLSKEVCLRCIFRLFGMQVPICSSLSVKSLLCHVLGEQADLHQNISSVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLxxxxxxxxxxxxxxxxxxxxxKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMNCFLTE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query561 2.2.26 [Sep-21-2011]
Q3MIT2529 Putative tRNA pseudouridi yes no 0.734 0.778 0.346 1e-64
Q9D3U0527 Putative tRNA pseudouridi yes no 0.732 0.779 0.340 6e-61
Q6ING2515 Putative tRNA pseudouridi N/A no 0.732 0.798 0.336 1e-55
Q9VPK7500 Putative tRNA pseudouridi yes no 0.458 0.514 0.361 1e-37
A1RX33444 tRNA pseudouridine syntha yes no 0.415 0.524 0.394 8e-37
Q2NE45407 tRNA pseudouridine syntha yes no 0.411 0.567 0.351 2e-33
Q6L227377 tRNA pseudouridine syntha yes no 0.393 0.586 0.372 3e-30
Q8TUV7436 tRNA pseudouridine syntha yes no 0.409 0.527 0.350 3e-29
D9PYH9402 tRNA pseudouridine syntha yes no 0.401 0.559 0.351 7e-29
Q9HIN9389 tRNA pseudouridine syntha yes no 0.395 0.570 0.360 1e-28
>sp|Q3MIT2|PUS10_HUMAN Putative tRNA pseudouridine synthase Pus10 OS=Homo sapiens GN=PUS10 PE=1 SV=1 Back     alignment and function desciption
 Score =  248 bits (632), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 159/459 (34%), Positives = 250/459 (54%), Gaps = 47/459 (10%)

Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
           N+C  CLGILQ  +C             DF   + + V+  G +  S    VS PP +  
Sbjct: 107 NVCNVCLGILQ-EFCEK-----------DFIKKVCQKVEASGFEFTSLVFSVSFPPQLSV 154

Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIR 219
            E+   L VK++   ++    R   +    K+A K+ +T+PL  E L     G S F + 
Sbjct: 155 REHAAWLLVKQEMGKQSLSLGRD--DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVS 211

Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
           + ++  E           +E C        +C    K+K        SV +   V+    
Sbjct: 212 VVFAHPET----------VEDCHFLAAICPDCFKPAKNK-------QSVFTRMAVM---- 250

Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
           K+ N +++ +  +    P       C  LE  C    ++  GRY KYSRN+ QT WIID 
Sbjct: 251 KALNKIKEEDFLKQFPCPPNSPKAVCAVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDG 310

Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
           ER  E+S+EE+I  ++L + + +S+ F ++GRED+DVR LG+GRPF  E+ N   V  + 
Sbjct: 311 ERKLESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTS 370

Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
             +KE++ KIN+  NK ++V++L++V  +    M+EGE EK K Y+AL+W ++ +Q +D 
Sbjct: 371 QEIKELQQKINNSSNK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDI 429

Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
           + ++ +K+     +I QKTP+RVLHRR    R ++I++M+ + +     +F LH+ TQAG
Sbjct: 430 EFLNDIKD----LKIDQKTPLRVLHRRPLAVRARVIHFMETQYV--DEHHFRLHLKTQAG 483

Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
           TYIKEFVHGD GRT P+IGS++   A+IL+LDV  V ++
Sbjct: 484 TYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVDVD 522
Pseudouridylate synthases catalyze pseudouridination of structural RNAs, including transfer, ribosomal, and splicing RNAs. PUS10 catalyzes the formation of the universal psi55 in the GC loop of transfer RNAs (Probable). Modulator of TRAIL-induced cell death via activation of procaspase 8 and BID cleavage. Required for the progression of the apoptotic signal through intrinsic mitochondrial cell death.
Homo sapiens (taxid: 9606)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: -
>sp|Q9D3U0|PUS10_MOUSE Putative tRNA pseudouridine synthase Pus10 OS=Mus musculus GN=Pus10 PE=1 SV=1 Back     alignment and function description
>sp|Q6ING2|PUS10_XENLA Putative tRNA pseudouridine synthase Pus10 OS=Xenopus laevis GN=pus10 PE=2 SV=1 Back     alignment and function description
>sp|Q9VPK7|PUS10_DROME Putative tRNA pseudouridine synthase Pus10 OS=Drosophila melanogaster GN=Pus10 PE=2 SV=2 Back     alignment and function description
>sp|A1RX33|PUS10_THEPD tRNA pseudouridine synthase Pus10 OS=Thermofilum pendens (strain Hrk 5) GN=pus10 PE=3 SV=1 Back     alignment and function description
>sp|Q2NE45|PUS10_METST tRNA pseudouridine synthase Pus10 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=pus10 PE=3 SV=1 Back     alignment and function description
>sp|Q6L227|PUS10_PICTO tRNA pseudouridine synthase Pus10 OS=Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=pus10 PE=3 SV=1 Back     alignment and function description
>sp|Q8TUV7|PUS10_METKA tRNA pseudouridine synthase Pus10 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pus10 PE=3 SV=1 Back     alignment and function description
>sp|D9PYH9|PUS10_METTM tRNA pseudouridine synthase Pus10 OS=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) GN=pus10 PE=3 SV=1 Back     alignment and function description
>sp|Q9HIN9|PUS10_THEAC tRNA pseudouridine synthase Pus10 OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=pus10 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query561
302141690591 unnamed protein product [Vitis vinifera] 0.989 0.939 0.646 0.0
225459802578 PREDICTED: putative tRNA pseudouridine s 0.989 0.960 0.631 0.0
255539118565 conserved hypothetical protein [Ricinus 0.982 0.975 0.594 0.0
224085980520 predicted protein [Populus trichocarpa] 0.925 0.998 0.599 0.0
356552044484 PREDICTED: putative tRNA pseudouridine s 0.848 0.983 0.595 1e-170
449455705497 PREDICTED: putative tRNA pseudouridine s 0.880 0.993 0.540 1e-153
297850454504 hypothetical protein ARALYDRAFT_889490 [ 0.852 0.948 0.544 1e-152
30686818504 Pseudouridine synthase family protein [A 0.827 0.920 0.559 1e-151
26453124504 unknown protein [Arabidopsis thaliana] g 0.827 0.920 0.555 1e-149
307136310501 hypothetical protein [Cucumis melo subsp 0.891 0.998 0.533 1e-148
>gi|302141690|emb|CBI18893.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/566 (64%), Positives = 440/566 (77%), Gaps = 11/566 (1%)

Query: 1   MANETEDAPTNSASESHA--TSADVERNPTDEDKNEKLLNDAVQFLPTDAVKDLLSKEVC 58
           M +ETEDA  ++  E+ A  +SA  +R     + + ++LNDAV  +   AVKDLLS  +C
Sbjct: 32  MHHETEDAHASNGHEAVAKVSSAAEDRRMIAGEDDMRILNDAVSKVSPHAVKDLLSLGIC 91

Query: 59  LRCIFRLFGMQVPI--CSSLSVKSLLCHVLGEQADLHQNISSVEPNICRSCLGILQFTYC 116
           + CIFRL G++  I  C SL + S+L  V+   A      S  EP IC  CLG+LQFTY 
Sbjct: 92  IGCIFRLSGVRGHIFSCPSLLL-SILHPVIDSGAAHSSQESECEPVICSICLGVLQFTYF 150

Query: 117 GDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRS 176
            DK+ +V+ +SA + AV+IA LVKKEGH+ D+FSLEVS+PP I ENE+ + LY+K+KY S
Sbjct: 151 DDKKMLVKKDSADELAVSIANLVKKEGHEFDNFSLEVSIPPVIAENEHVVLLYMKKKYGS 210

Query: 177 EAWFKDRSISECSSTKDALKFALTNPLETLLDVKC-GISTFHIRLTYSRVEASIRIQNFV 235
           E WF+++ +SE  S KDALK +L NPLE LLDVK  G STF IRLTY++  AS + QN  
Sbjct: 211 ELWFQEKFLSERISAKDALKLSLCNPLEKLLDVKSSGSSTFRIRLTYAQPRASGKNQNIT 270

Query: 236 EKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHE 295
           E+ +GCKRR+   +N   TV   S + G+E S +ST+E      K S+GLQDNE S+  +
Sbjct: 271 ERSQGCKRRRTGTENIFSTVHG-SVVDGIECSDISTSEADAGIRKPSDGLQDNENSDCFK 329

Query: 296 FPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNIL 355
           FPL+KVN+PC L  LC+RT IY GGRYLKYSRNVSQTRWIID+ERMGEAS+EEIIGGNIL
Sbjct: 330 FPLEKVNQPCHLAFLCYRTHIYIGGRYLKYSRNVSQTRWIIDDERMGEASVEEIIGGNIL 389

Query: 356 PMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLV 415
           PMC GD+YKFHAAGREDI+VRMLGSGRPFL EIQN+R VPSE L+KEIE KIN+LENKLV
Sbjct: 390 PMCLGDNYKFHAAGREDINVRMLGSGRPFLVEIQNSRHVPSEALIKEIEVKINNLENKLV 449

Query: 416 RVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQK 475
           RVKNLK+V S GW+LM+EGE EKQKQYAALVWI RPL+DED Q ISSLK+     +ILQ+
Sbjct: 450 RVKNLKLVDSHGWSLMQEGEEEKQKQYAALVWIDRPLKDEDMQAISSLKDK----KILQR 505

Query: 476 TPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSI 535
           TPIRVLHRRSPLEREKII+WMKIEKIAGSSQYFLLH+CTQAGTYIKEFVHGDLGRT+PS+
Sbjct: 506 TPIRVLHRRSPLEREKIIHWMKIEKIAGSSQYFLLHLCTQAGTYIKEFVHGDLGRTHPSV 565

Query: 536 GSILGCRAEILQLDVTDVKMNCFLTE 561
           GSILGCRAEILQLDVT+VKM+CFL E
Sbjct: 566 GSILGCRAEILQLDVTEVKMDCFLDE 591

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225459802|ref|XP_002284814.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255539118|ref|XP_002510624.1| conserved hypothetical protein [Ricinus communis] gi|223551325|gb|EEF52811.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224085980|ref|XP_002307763.1| predicted protein [Populus trichocarpa] gi|222857212|gb|EEE94759.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356552044|ref|XP_003544381.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like [Glycine max] Back     alignment and taxonomy information
>gi|449455705|ref|XP_004145592.1| PREDICTED: putative tRNA pseudouridine synthase Pus10-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297850454|ref|XP_002893108.1| hypothetical protein ARALYDRAFT_889490 [Arabidopsis lyrata subsp. lyrata] gi|297338950|gb|EFH69367.1| hypothetical protein ARALYDRAFT_889490 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30686818|ref|NP_173466.2| Pseudouridine synthase family protein [Arabidopsis thaliana] gi|332191849|gb|AEE29970.1| Pseudouridine synthase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|26453124|dbj|BAC43638.1| unknown protein [Arabidopsis thaliana] gi|29028890|gb|AAO64824.1| At1g20410 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|307136310|gb|ADN34134.1| hypothetical protein [Cucumis melo subsp. melo] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query561
TAIR|locus:2034398504 AT1G20410 [Arabidopsis thalian 0.458 0.509 0.750 6.2e-142
UNIPROTKB|E2R061532 PUS10 "Uncharacterized protein 0.540 0.569 0.386 1.1e-67
UNIPROTKB|Q3MIT2529 PUS10 "Putative tRNA pseudouri 0.540 0.572 0.386 1.7e-67
UNIPROTKB|G3V6R8528 Pus10 "Protein Pus10" [Rattus 0.433 0.460 0.450 2.4e-66
UNIPROTKB|F1MRD5533 PUS10 "Uncharacterized protein 0.481 0.506 0.415 3.9e-66
UNIPROTKB|F1SQM1536 PUS10 "Uncharacterized protein 0.540 0.565 0.373 7.1e-65
MGI|MGI:1921717527 Pus10 "pseudouridylate synthas 0.452 0.481 0.441 3.8e-64
UNIPROTKB|E1C8Y6538 PUS10 "Uncharacterized protein 0.541 0.565 0.388 4.8e-62
ZFIN|ZDB-GENE-080204-5519 pus10 "pseudouridylate synthas 0.566 0.612 0.362 4.8e-54
DICTYBASE|DDB_G0267794640 DDB_G0267794 "putative tRNA ps 0.511 0.448 0.394 2.3e-50
TAIR|locus:2034398 AT1G20410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1037 (370.1 bits), Expect = 6.2e-142, Sum P(2) = 6.2e-142
 Identities = 196/261 (75%), Positives = 223/261 (85%)

Query:   295 EFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNI 354
             E   +KV EPC     C R PI+F GRY KYSRNVSQ+RWIID+ERMGEAS+EEI+GGNI
Sbjct:   245 ENSFEKVYEPCIFSVHCNRMPIFFSGRYFKYSRNVSQSRWIIDDERMGEASVEEILGGNI 304

Query:   355 LPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKL 414
             LP C GDSYKFHAAGREDIDVRMLGSGRPFL E+QN+R++PSE  +KE+E KIN  E KL
Sbjct:   305 LPACLGDSYKFHAAGREDIDVRMLGSGRPFLIEVQNSRQLPSEQSLKEVEEKINKSEKKL 364

Query:   415 VRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQ 474
             V VK+LK +GSQ W +MREGEAEKQKQY ALVWISRPL+++DF +IS LKE     +ILQ
Sbjct:   365 VGVKDLKCIGSQCWAMMREGEAEKQKQYVALVWISRPLEEKDFNSISCLKEL----KILQ 420

Query:   475 KTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPS 534
             KTP+RVLHRRSPL+REKII+WMK+EKI G S YFLLH+CTQAGTYIKEFVHGDLGRT PS
Sbjct:   421 KTPVRVLHRRSPLDREKIIHWMKVEKIKGHSHYFLLHLCTQAGTYIKEFVHGDLGRTTPS 480

Query:   535 IGSILGCRAEILQLDVTDVKM 555
             +GSILGCRAEI+QLDVTDVKM
Sbjct:   481 MGSILGCRAEIIQLDVTDVKM 501
GO:0001522 "pseudouridine synthesis" evidence=IEA
GO:0003723 "RNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0009451 "RNA modification" evidence=IEA
GO:0009982 "pseudouridine synthase activity" evidence=IEA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0016570 "histone modification" evidence=RCA
GO:0034968 "histone lysine methylation" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
UNIPROTKB|E2R061 PUS10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q3MIT2 PUS10 "Putative tRNA pseudouridine synthase Pus10" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3V6R8 Pus10 "Protein Pus10" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MRD5 PUS10 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQM1 PUS10 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1921717 Pus10 "pseudouridylate synthase 10" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8Y6 PUS10 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080204-5 pus10 "pseudouridylate synthase 10" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0267794 DDB_G0267794 "putative tRNA pseudouridine synthase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query561
COG1258398 COG1258, COG1258, Predicted pseudouridylate syntha 2e-56
PRK14554422 PRK14554, PRK14554, putative pseudouridylate synth 6e-56
TIGR01213388 TIGR01213, pseudo_Pus10arc, tRNA pseudouridine(54/ 1e-52
>gnl|CDD|224178 COG1258, COG1258, Predicted pseudouridylate synthase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  194 bits (494), Expect = 2e-56
 Identities = 93/240 (38%), Positives = 132/240 (55%), Gaps = 12/240 (5%)

Query: 315 PIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDID 374
           PIY  GRY K  R + QTRW   E      S+EE+I   I     G   KFH AGRED+D
Sbjct: 164 PIYIYGRYRKLVRGIPQTRWPCRELY--PESVEELIKQPIKEAFGGLDAKFHGAGREDVD 221

Query: 375 VRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREG 434
           VRMLG+GRPF+ E++  R    +L   E+E +IN      V V +L+ VG +    ++E 
Sbjct: 222 VRMLGTGRPFVLEVKEPRRRNVDL--DELEEEINR--GGKVEVFDLEFVGREEVEEIKE- 276

Query: 435 EAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIIN 494
               +K Y ALV+  RP+ DE    +  +  ++    I Q+TP RVLHRR+ L R + + 
Sbjct: 277 TERHRKVYRALVYSDRPVSDEK---LEEVLGSLEGKTIRQRTPRRVLHRRADLVRIRRVY 333

Query: 495 WMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVK 554
            + ++ I    ++  L +  + G YIKE + GD GRT PS+  ILG  A + +LDV  V+
Sbjct: 334 ELSLDLIDD--RHAELEIEAEGGLYIKELISGDGGRTRPSLSEILGVEAVVEELDVLKVE 391

Length = 398
>gnl|CDD|237754 PRK14554, PRK14554, putative pseudouridylate synthase; Provisional Back     alignment and domain information
>gnl|CDD|233315 TIGR01213, pseudo_Pus10arc, tRNA pseudouridine(54/55) synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 561
TIGR01213388 conserved hypothetical protein TIGR01213. Members 100.0
PRK14554422 putative pseudouridylate synthase; Provisional 100.0
KOG2364433 consensus Predicted pseudouridylate synthase [Tran 100.0
COG1258398 Predicted pseudouridylate synthase [Translation, r 100.0
cd02572182 PseudoU_synth_hDyskerin PseudoU_synth_hDyskerin_Li 99.5
TIGR00425 322 CBF5 rRNA pseudouridine synthase, putative. This f 99.23
PRK04270 300 H/ACA RNA-protein complex component Cbf5p; Reviewe 99.21
COG0130271 TruB Pseudouridine synthase [Translation, ribosoma 99.07
cd00506210 PseudoU_synth_TruB_like PseudoU_synth_TruB: Pseudo 98.85
PRK00020244 truB tRNA pseudouridine synthase B; Provisional 98.6
PRK02755295 truB tRNA pseudouridine synthase B; Provisional 98.58
PRK04099273 truB tRNA pseudouridine synthase B; Provisional 98.55
PRK05033 312 truB tRNA pseudouridine synthase B; Provisional 98.54
PRK00130290 truB tRNA pseudouridine synthase B; Provisional 98.54
PRK05389305 truB tRNA pseudouridine synthase B; Provisional 98.52
cd02573277 PseudoU_synth_EcTruB PseudoU_synth_EcTruB: Pseudou 98.5
TIGR00431209 TruB tRNA pseudouridine 55 synthase. TruB, the tRN 98.5
PRK02193279 truB tRNA pseudouridine synthase B; Provisional 98.48
PRK14124 308 tRNA pseudouridine synthase B; Provisional 98.46
PRK01851303 truB tRNA pseudouridine synthase B; Provisional 98.45
PRK01550304 truB tRNA pseudouridine synthase B; Provisional 98.44
PRK04642300 truB tRNA pseudouridine synthase B; Provisional 98.41
PRK01528292 truB tRNA pseudouridine synthase B; Provisional 98.39
PRK02484294 truB tRNA pseudouridine synthase B; Provisional 98.38
PRK03287298 truB tRNA pseudouridine synthase B; Provisional 98.37
PRK14846 345 truB tRNA pseudouridine synthase B; Provisional 98.34
PRK14122312 tRNA pseudouridine synthase B; Provisional 98.3
KOG2364433 consensus Predicted pseudouridylate synthase [Tran 98.25
PRK14123305 tRNA pseudouridine synthase B; Provisional 98.24
cd02867312 PseudoU_synth_TruB_4 PseudoU_synth_TruB_4: Pseudou 98.18
PRK00989230 truB tRNA pseudouridine synthase B; Provisional 98.1
PF01509149 TruB_N: TruB family pseudouridylate synthase (N te 97.75
cd02868226 PseudoU_synth_hTruB2_like PseudoU_synth_ hTRUB2_Li 97.69
PRK14586245 tRNA pseudouridine synthase ACD; Provisional 96.52
PRK12434245 tRNA pseudouridine synthase A; Reviewed 95.8
PRK14588272 tRNA pseudouridine synthase ACD; Provisional 95.67
TIGR00071227 hisT_truA pseudouridylate synthase I. universal so 95.62
COG0101266 TruA Pseudouridylate synthase [Translation, riboso 95.62
cd02570239 PseudoU_synth_EcTruA PseudoU_synth_EcTruA: Pseudou 95.16
cd00497224 PseudoU_synth_TruA_like PseudoU_synth_TruA: Pseudo 94.99
PRK00021244 truA tRNA pseudouridine synthase A; Validated 94.95
cd02568245 PseudoU_synth_PUS1_PUS2 PseudoU_synth_PUS1_PUS2: P 94.43
PRK14589265 tRNA pseudouridine synthase ACD; Provisional 93.86
cd02866221 PseudoU_synth_TruA_Archea PseudoU_synth_archea: Ps 93.01
cd02569256 PseudoU_synth_ScPus3 PseudoU_synth_ScPus3-like: Ps 92.82
PRK14587256 tRNA pseudouridine synthase ACD; Provisional 84.17
>TIGR01213 conserved hypothetical protein TIGR01213 Back     alignment and domain information 
Probab=100.00  E-value=4.2e-99  Score=790.77  Aligned_cols=381  Identities=31%  Similarity=0.468  Sum_probs=320.7

Q ss_pred             HHHHHhCCCchhhhhhhhcccccccchh----hHHHHHhhhhccccccccccCCCCCcccccccccccccccCCcccccc
Q 008562           49 VKDLLSKEVCLRCIFRLFGMQVPICSSL----SVKSLLCHVLGEQADLHQNISSVEPNICRSCLGILQFTYCGDKERVVE  124 (561)
Q Consensus        49 v~~Lls~G~C~rCi~Rf~~~~~~~~~n~----~lk~~L~~~L~~~~Dl~~~~~~~~~~~C~iClGiLq~~~~d~~~~~~~  124 (561)
                      .+.|..|++|++|+||+||.++++.+|.    +|+..+.+..+.     ...+..++..|++|.|+|+.           
T Consensus         2 ~~il~~~plCd~CLGR~Fa~~~~gl~N~eRG~ai~~~~~~e~~~-----~~~~~~~~~~C~iC~g~f~~-----------   65 (388)
T TIGR01213         2 LEILAKYPLCDRCLGRLFAKLGHGTSNRERGEALQLALALELGR-----PVKEFVESEPCDVCGGIFDR-----------   65 (388)
T ss_pred             hhhHhcCCCCccccchhhhhhccCCCHHHHHHHHHHHHHhhccc-----cccccCCCCCcccccChHhH-----------
Confidence            4678899999999999999999999999    455556553331     11111244569999999983           


Q ss_pred             ccchhHHHHHHHHHHHhcCCccceEEEEeecChhHHhhhhHHHHHHHHhccccccccccccccccchhhHHHHhhhhhHH
Q 008562          125 NESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLE  204 (561)
Q Consensus       125 ~~~~~d~~~~I~e~vk~~gyef~sF~L~ISLP~~l~lRE~s~~l~l~~~~~~~~~~~~~~~~~~v~~Kea~K~~l~~~l~  204 (561)
                         .++|++++.+++  +||||+||.++..+|..+..+|..+|.    +||-             ...|++|-=+.    
T Consensus        66 ---~~~~a~~~~~~l--~~~ef~tf~VGt~~p~~i~e~E~~i~~----~~gl-------------~~~E~iK~E~n----  119 (388)
T TIGR01213        66 ---FDEAADLVAEKV--GDYDFSTFLVGTRFPPDVIELEEEIRK----EFGS-------------GGGESIKREFN----  119 (388)
T ss_pred             ---HHHHHHHHHHHh--hcCccceEEEeeeCCHHHHHHHHHHHH----HhCC-------------CcchhHHHHHh----
Confidence               278999999999  699999999999999999999999888    7772             12233221111    


Q ss_pred             hHhccccCCceeEEEEEEecchhhHHHhhhhhhhccccccccccccccccccccccccccccceeeecccccccccccCC
Q 008562          205 TLLDVKCGISTFHIRLTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNG  284 (561)
Q Consensus       205 ~~L~~~~~~s~f~i~v~~~h~~~~~e~~~l~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i  284 (561)
                                              .|+.+.+....| |...+.+|+                 .++..++.         
T Consensus       120 ------------------------RevGk~~~~~~g-k~~d~~~Pd-----------------v~i~vd~~---------  148 (388)
T TIGR01213       120 ------------------------REVGKLFVKRTG-KEVDFERPD-----------------LVIMVEFE---------  148 (388)
T ss_pred             ------------------------HHHHHHHHHHhC-CCccCCCCC-----------------EEEEEEcC---------
Confidence                                    122223322222 223333343                 33333333         


Q ss_pred             CCCCCCCcccccCCCCCCCCceeeEEEEeccEEEEEEeeecccCCCCcccccCccccCcCcHHHHhhhccccccCCCceE
Q 008562          285 LQDNEPSETHEFPLKKVNEPCRLECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYK  364 (561)
Q Consensus       285 ~~~~f~~~~~~~Pp~~v~~~~~~~~~~~~~pi~i~GRY~K~sR~lsQTpW~~~g~r~~~~SVeE~I~~~~~~~f~~~~~~  364 (561)
                                       .    -.|.++++||||+|||+|++|+||||||+|++  ++++||||+|+.++.++|+|++++
T Consensus       149 -----------------~----~~v~vq~~pifi~GRY~Kl~R~ipQT~W~~~~--~~~~SVeelI~~~v~~~~~~~~~~  205 (388)
T TIGR01213       149 -----------------Y----EFVDVQVNSLFIYGRYRKLVRGIPQTRWPCRK--NYPESVEELIASPFLKATGGTDAY  205 (388)
T ss_pred             -----------------C----CeEEEEECcEEEEEEEeecccCCCCCccccCC--CcCchHHHHHHHHHHHHhCCceeE
Confidence                             0    13588999999999999999999999999976  689999999999999999999999


Q ss_pred             EeecCCCCccccccCCCccEEEEEecCccCCcHHHHHHHHHHHhccCCCcEEEEeeEEecchhhhhhhcccccccceEEE
Q 008562          365 FHAAGREDIDVRMLGSGRPFLFEIQNAREVPSELLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAA  444 (561)
Q Consensus       365 F~ssGREDvDVRmLG~GRPFvlEi~nPr~~~~~~~~~~l~~~In~~~~~~V~v~~L~~v~r~~~~~ik~~e~~k~K~Y~a  444 (561)
                      ||+||||||||||||+|||||+||+||+++.  .++++|+++||++.+|.|+|+||++++++.+..||+++.  .|.|+|
T Consensus       206 Fh~aGREDvDvRMLG~GRPFvlEi~~P~rr~--~dl~~le~~IN~~~~g~V~v~~L~~~~~~~v~~ik~~~~--~K~Y~a  281 (388)
T TIGR01213       206 FHGAGREDVDVRMLGTGRPFVLEVKEPRYRK--IDLDPLEEEINTSGKGKVEVEGLKFATREEVEEVKEEKH--RKVYRA  281 (388)
T ss_pred             EeccCccccceeeccCCCceEEEecCCccCC--CCHHHHHHHHhhccCCCEEEEEeEEEcHHHHHHHhccCC--ceEEEE
Confidence            9999999999999999999999999999853  678899999999988999999999999999999997665  699999


Q ss_pred             EEEEcCCCCHHHHHH-HHhcccccceeeeeecCCeEEEeecCCCceeeEEEEEEEEEEcCCccEEEEEEEecCCceeeEe
Q 008562          445 LVWISRPLQDEDFQT-ISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEF  523 (561)
Q Consensus       445 lv~~~~~v~~e~l~~-l~~~~~~~~~~~I~QkTP~RVlhRR~~~~R~R~Iy~~~~~~i~~~~~~f~l~i~tqaGtYIKEf  523 (561)
                      +||+++++++++|++ ++.+++    ++|+|+||+||+|||++++|+|+||+|++..+++  ++|+|+|.||||||||||
T Consensus       282 lV~~~~~v~~e~L~~~~~~l~g----~~I~QrTP~RV~hRRa~~~R~R~I~~i~~~~i~~--~~~~l~v~~qaGtYIKEl  355 (388)
T TIGR01213       282 LVEVDGPVSDEDLEELCKELEG----ATIYQRTPLRVLHRRADLVRERRVYQVDLSGLDG--NHAELIIEAEGGLYIKEL  355 (388)
T ss_pred             EEEECCCCCHHHHHHHHHhccC----CEEEccCCceEEEecCCCceEEEEEEEEEEEEcC--CEEEEEEEecCCCEEEEE
Confidence            999999999999976 679999    9999999999999999999999999999999975  899999999999999999


Q ss_pred             eeCCCCCcCcchhhhcCCccEEEEEEEEEEec
Q 008562          524 VHGDLGRTNPSIGSILGCRAEILQLDVTDVKM  555 (561)
Q Consensus       524 VhGD~GRT~PSl~~iLg~~adileLDV~~V~~  555 (561)
                      ||||+|||+||||++||++|+|++|||++|+.
T Consensus       356 V~GD~GRT~PSl~~lLg~~a~i~eLDV~~V~~  387 (388)
T TIGR01213       356 VSGDGGRTRPSVSEVLGVEAVCKELDVLKVCD  387 (388)
T ss_pred             EcCCCCCcCCcHHHHhCCCceEEEeEEEEEec
Confidence            99999999999999999999999999999974

Members of this family show twilight-zone similarity to several predicted RNA pseudouridine synthases. All trusted members of this family are archaeal. Several eukaryotic homologs lack N-terminal homology including two CXXC motifs.
>PRK14554 putative pseudouridylate synthase; Provisional Back     alignment and domain information
>KOG2364 consensus Predicted pseudouridylate synthase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1258 Predicted pseudouridylate synthase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd02572 PseudoU_synth_hDyskerin PseudoU_synth_hDyskerin_Like: Pseudouridine synthase, human dyskerin like Back     alignment and domain information
>TIGR00425 CBF5 rRNA pseudouridine synthase, putative Back     alignment and domain information
>PRK04270 H/ACA RNA-protein complex component Cbf5p; Reviewed Back     alignment and domain information
>COG0130 TruB Pseudouridine synthase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00506 PseudoU_synth_TruB_like PseudoU_synth_TruB: Pseudouridine synthase, TruB family Back     alignment and domain information
>PRK00020 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK02755 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK04099 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK05033 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK00130 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK05389 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>cd02573 PseudoU_synth_EcTruB PseudoU_synth_EcTruB: Pseudouridine synthase, Escherichia coli TruB like Back     alignment and domain information
>TIGR00431 TruB tRNA pseudouridine 55 synthase Back     alignment and domain information
>PRK02193 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK14124 tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK01851 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK01550 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK04642 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK01528 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK02484 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK03287 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK14846 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PRK14122 tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>KOG2364 consensus Predicted pseudouridylate synthase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14123 tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>cd02867 PseudoU_synth_TruB_4 PseudoU_synth_TruB_4: Pseudouridine synthase homolog 4 Back     alignment and domain information
>PRK00989 truB tRNA pseudouridine synthase B; Provisional Back     alignment and domain information
>PF01509 TruB_N: TruB family pseudouridylate synthase (N terminal domain); InterPro: IPR002501 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones Back     alignment and domain information
>cd02868 PseudoU_synth_hTruB2_like PseudoU_synth_ hTRUB2_Like: Pseudouridine synthase, humanTRUB2_like Back     alignment and domain information
>PRK14586 tRNA pseudouridine synthase ACD; Provisional Back     alignment and domain information
>PRK12434 tRNA pseudouridine synthase A; Reviewed Back     alignment and domain information
>PRK14588 tRNA pseudouridine synthase ACD; Provisional Back     alignment and domain information
>TIGR00071 hisT_truA pseudouridylate synthase I Back     alignment and domain information
>COG0101 TruA Pseudouridylate synthase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd02570 PseudoU_synth_EcTruA PseudoU_synth_EcTruA: Pseudouridine synthase, Escherichia coli TruA like Back     alignment and domain information
>cd00497 PseudoU_synth_TruA_like PseudoU_synth_TruA: Pseudouridine synthase, TruA family Back     alignment and domain information
>PRK00021 truA tRNA pseudouridine synthase A; Validated Back     alignment and domain information
>cd02568 PseudoU_synth_PUS1_PUS2 PseudoU_synth_PUS1_PUS2: Pseudouridine synthase, PUS1/ PUS2 like Back     alignment and domain information
>PRK14589 tRNA pseudouridine synthase ACD; Provisional Back     alignment and domain information
>cd02866 PseudoU_synth_TruA_Archea PseudoU_synth_archea: Pseudouridine synthase, Back     alignment and domain information
>cd02569 PseudoU_synth_ScPus3 PseudoU_synth_ScPus3-like: Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like Back     alignment and domain information
>PRK14587 tRNA pseudouridine synthase ACD; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query561
2v9k_A530 Crystal Structure Of Human Pus10, A Novel Pseudouri 1e-65
>pdb|2V9K|A Chain A, Crystal Structure Of Human Pus10, A Novel Pseudouridine Synthase Length = 530 Back     alignment and structure 
Iteration: 1

 Score =  247 bits (631), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 159/459 (34%), Positives = 250/459 (54%), Gaps = 47/459 (10%)
Query: 102 NICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILE 161
           N+C  CLGILQ  +C             DF   + + V+  G +  S    VS PP +  
Sbjct: 108 NVCNVCLGILQ-EFCEK-----------DFIKKVCQKVEASGFEFTSLVFSVSFPPQLSV 155
Query: 162 NENKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPL--ETLLDVKCGISTFHIR 219
            E+   L VK++   ++    R   +    K+A K+ +T+PL  E L     G S F + 
Sbjct: 156 REHAAWLLVKQEMGKQSLSLGRD--DIVQLKEAYKW-ITHPLFSEELGVPIDGKSLFEVS 212
Query: 220 LTYSRVEASIRIQNFVEKIEGCKRRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDE 279
           + ++  E           +E C        +C    K+K        SV +   V+    
Sbjct: 213 VVFAHPET----------VEDCHFLAAICPDCFKPAKNK-------QSVFTRMAVM---- 251
Query: 280 KSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGRYLKYSRNVSQTRWIIDE 338
           K+ N +++ +  +    P       C  LE  C    ++  GRY KYSRN+ QT WIID 
Sbjct: 252 KALNKIKEEDFLKQFPCPPNSPKAVCAVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDG 311
Query: 339 ERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SE 397
           ER  E+S+EE+I  ++L + + +S+ F ++GRED+DVR LG+GRPF  E+ N   V  + 
Sbjct: 312 ERKLESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTS 371
Query: 398 LLVKEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDF 457
             +KE++ KIN+  NK ++V++L++V  +    M+EGE EK K Y+AL+W ++ +Q +D 
Sbjct: 372 QEIKELQQKINNSSNK-IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDI 430
Query: 458 QTISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAG 517
           + ++ +K+     +I QKTP+RVLHRR    R ++I++M+ + +     +F LH+ TQAG
Sbjct: 431 EFLNDIKD----LKIDQKTPLRVLHRRPLAVRARVIHFMETQYV--DEHHFRLHLKTQAG 484
Query: 518 TYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN 556
           TYIKEFVHGD GRT P+IGS++   A+IL+LDV  V ++
Sbjct: 485 TYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVDVD 523

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query561
2v9k_A530 Uncharacterized protein FLJ32312; pseudouridine sy 1e-111
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens} Length = 530 Back     alignment and structure
 Score =  340 bits (873), Expect = e-111
 Identities = 162/554 (29%), Positives = 253/554 (45%), Gaps = 87/554 (15%)

Query: 48  AVKDLLSKEVCLRCIFRLFGMQVPICSSLSVKSLL------------------------- 82
             + LL+   C RCIFR  G+       L  K LL                         
Sbjct: 12  VAQLLLNTGTCPRCIFRFCGVDFHAPYKLPYKELLNELQKFLETEKDELILEVMNPPPKK 71

Query: 83  -----------------CHVLGEQADLHQNISSVEPNICRSCLGILQFTYCGDKERVVEN 125
                               +           +   N+C  CLGILQ             
Sbjct: 72  IRLQELEDSIDNLSQNGEGRISVSHVGSTASKNSNLNVCNVCLGILQ------------E 119

Query: 126 ESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENENKLSLYVKRKYRSEAWFKDRSI 185
               DF   + + V+  G +  S    VS PP +   E+   L VK++   ++    R  
Sbjct: 120 FCEKDFIKKVCQKVEASGFEFTSLVFSVSFPPQLSVREHAAWLLVKQEMGKQSLSLGR-- 177

Query: 186 SECSSTKDALKFALTNPLETLLDVKC-GISTFHIRLTYSRVEASIRIQNFVEKIEGCKRR 244
            +    K+A K+         L V   G S F + + ++  E              C + 
Sbjct: 178 DDIVQLKEAYKWITHPLFSEELGVPIDGKSLFEVSVVFAHPETVEDCHFLAAICPDCFKP 237

Query: 245 KVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEP 304
                        +S  T +               K+ N +++ +  +    P       
Sbjct: 238 A---------KNKQSVFTRMAV------------MKALNKIKEEDFLKQFPCPPNSPKAV 276

Query: 305 CRL-ECLCFRTPIYFGGRYLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSY 363
           C + E  C    ++  GRY KYSRN+ QT WIID ER  E+S+EE+I  ++L + + +S+
Sbjct: 277 CAVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLLAVFKAESF 336

Query: 364 KFHAAGREDIDVRMLGSGRPFLFEIQNA-REVPSELLVKEIESKINSLENKLVRVKNLKI 422
            F ++GRED+DVR LG+GRPF  E+ N  R   +   +KE++ KIN+  NK ++V++L++
Sbjct: 337 NFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNK-IQVRDLQL 395

Query: 423 VGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRVLH 482
           V  +    M+EGE EK K Y+AL+W ++ +Q +D + ++ +K+      I QKTP+RVLH
Sbjct: 396 VTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDIEFLNDIKDLK----IDQKTPLRVLH 451

Query: 483 RRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCR 542
           RR    R ++I++M+ + +     +F LH+ TQAGTYIKEFVHGD GRT P+IGS++   
Sbjct: 452 RRPLAVRARVIHFMETQYV--DEHHFRLHLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVT 509

Query: 543 AEILQLDVTDVKMN 556
           A+IL+LDV  V ++
Sbjct: 510 ADILELDVESVDVD 523
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query561
2v9k_A530 Uncharacterized protein FLJ32312; pseudouridine sy 100.0
2aus_C 334 Pseudouridine synthase; isomerase, structural prot 99.5
2apo_A 357 Probable tRNA pseudouridine synthase B; protein-pr 99.42
1k8w_A 327 TRNA pseudouridine synthase B; protein-RNA complex 99.12
3u28_A 400 H/ACA ribonucleoprotein complex subunit 4; pseudou 99.1
1r3e_A 309 TRNA pseudouridine synthase B; RNA modification, p 98.91
1sgv_A 316 TRNA pseudouridine synthase B; hinged motion, tRNA 98.55
1dj0_A264 Pseudouridine synthase I; alpha/beta fold, RNA-bin 95.59
1vs3_A249 TRNA pseudouridine synthase A; TRUA, tRNA modifica 94.95
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=5.4e-121  Score=987.40  Aligned_cols=469  Identities=35%  Similarity=0.585  Sum_probs=410.3

Q ss_pred             HHHHHHHHhCCCchhhhhhhhcccccccchhhHHH---HHhhhhccccc-------------------------ccccc-
Q 008562           46 TDAVKDLLSKEVCLRCIFRLFGMQVPICSSLSVKS---LLCHVLGEQAD-------------------------LHQNI-   96 (561)
Q Consensus        46 ~~av~~Lls~G~C~rCi~Rf~~~~~~~~~n~~lk~---~L~~~L~~~~D-------------------------l~~~~-   96 (561)
                      .+++++|++.|||.||||||++++++++|..++..   .|+.++.+.++                         +.+.+ 
T Consensus        10 ~~~~~~L~~~g~C~rCilRf~~~~~~~~y~~~~~~l~~~l~~~~~~~~~~~~~~~~~~p~k~~r~~~~~~~~~~~~~~~~   89 (530)
T 2v9k_A           10 KHVAQLLLNTGTCPRCIFRFCGVDFHAPYKLPYKELLNELQKFLETEKDELILEVMNPPPKKIRLQELEDSIDNLSQNGE   89 (530)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHTTCCCSGGGGSCHHHHHHHHHHHHTC----------------------------------
T ss_pred             HHHHHHHHHCCCCHHHHhHhhcCccchhhhhhHHHHHHHHHHHhhccccccccccccccchhhccccccccccccccccc
Confidence            58999999999999999999999999999988533   35666553111                         11111 


Q ss_pred             -------------CCCCCcccccccccccccccCCccccccccchhHHHHHHHHHHHhcCCccceEEEEeecChhHHhhh
Q 008562           97 -------------SSVEPNICRSCLGILQFTYCGDKERVVENESACDFAVAIAELVKKEGHQIDSFSLEVSMPPTILENE  163 (561)
Q Consensus        97 -------------~~~~~~~C~iClGiLq~~~~d~~~~~~~~~~~~d~~~~I~e~vk~~gyef~sF~L~ISLP~~l~lRE  163 (561)
                                   .....+.|++|+|+||....            ++|+++|+++++++||+|++|+|+++||+++++||
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~C~iClGil~~~~~------------~~~~~~i~~~v~~~~yef~tF~lgvslP~~i~~rE  157 (530)
T 2v9k_A           90 GRISVSHVGSTASKNSNLNVCNVCLGILQEFCE------------KDFIKKVCQKVEASGFEFTSLVFSVSFPPQLSVRE  157 (530)
T ss_dssp             ------------------CCCTTTTTTTTGGGS------------HHHHHHHHHHHHHTCCCCSCBEEEEECCTTHHHHH
T ss_pred             cccccccccccccccCCCCcCcCccchhhhcch------------HHHHHHHHHHHhhcCCccccEEEEEeCCHHHHHHH
Confidence                         11245689999999984321            58999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhccccccccccccccccchhhHHHHhhhhhHHhHhccccCC-ceeEEEEEEecchhhHHHhhhhhhhcccc
Q 008562          164 NKLSLYVKRKYRSEAWFKDRSISECSSTKDALKFALTNPLETLLDVKCGI-STFHIRLTYSRVEASIRIQNFVEKIEGCK  242 (561)
Q Consensus       164 ~s~~l~l~~~~~~~~~~~~~~~~~~v~~Kea~K~~l~~~l~~~L~~~~~~-s~f~i~v~~~h~~~~~e~~~l~~~~~~~k  242 (561)
                      +++|++++++||+..+..+.  ++.+++|++|||.+++.|+++||++++. |+|.|.+.|+|++++.++++|.+..+++ 
T Consensus       158 ~~l~~~~~~~~~~~~l~~~~--~~~e~iK~e~kr~lgk~l~~~lg~~~~~~sp~~v~v~~~~~~~~~d~~~L~~~~~~~-  234 (530)
T 2v9k_A          158 HAAWLLVKQEMGKQSLSLGR--DDIVQLKEAYKWITHPLFSEELGVPIDGKSLFEVSVVFAHPETVEDCHFLAAICPDC-  234 (530)
T ss_dssp             HHHHHHHHHHHHHTTCCCCG--GGSCCHHHHHHHHHHHHHHHHHSSCBCTTCSEEEEEEEECGGGTHHHHHHHTTCTTC-
T ss_pred             HHHHHHHHHhccccccccCC--CCceeHHHHHHHHHhHHHHHHhCCCcCCCCCeEEEEEecCccchhhhhhhhhhcccc-
Confidence            99999999999976444333  3579999999999999999999999885 5599999999999999999998655544 


Q ss_pred             ccccccccccccccccccccccccceeeecccccccccccCCCCCCCCCcccccCCCCCCCCce-eeEEEEeccEEEEEE
Q 008562          243 RRKVDAKNCLDTVKDKSAITGVENSVVSTTEVIPVDEKSSNGLQDNEPSETHEFPLKKVNEPCR-LECLCFRTPIYFGGR  321 (561)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~~~f~~~~~~~Pp~~v~~~~~-~~~~~~~~pi~i~GR  321 (561)
                               |++.+++++++|+   +.+.++|+       +|++++|. +++++||..+.++|+ ++++|.|+||||+||
T Consensus       235 ---------f~~~k~~~~~~t~---~~v~~~l~-------~i~~~~f~-~~~~~Pp~~~~~~~~~~~i~~~~~pifi~GR  294 (530)
T 2v9k_A          235 ---------FKPAKNKQSVFTR---MAVMKALN-------KIKEEDFL-KQFPCPPNSPKAVCAVLEIECAHGAVFVAGR  294 (530)
T ss_dssp             ---------C----------CH---HHHHHHHH-------HSCHHHHH-HHSCSSCCCCSSCCEEEEEEEEECCEEEEEE
T ss_pred             ---------cccccccccchhH---HHHHHHHh-------hcChhhHh-hcccCCCCCccccceeEEEEEccCcEEEEEE
Confidence                     3344455566654   55666666       89999999 999999999999996 689999999999999


Q ss_pred             eeecccCCCCcccccCccccCcCcHHHHhhhccccccCCCceEEeecCCCCccccccCCCccEEEEEecCccCC-cHHHH
Q 008562          322 YLKYSRNVSQTRWIIDEERMGEASIEEIIGGNILPMCRGDSYKFHAAGREDIDVRMLGSGRPFLFEIQNAREVP-SELLV  400 (561)
Q Consensus       322 Y~K~sR~lsQTpW~~~g~r~~~~SVeE~I~~~~~~~f~~~~~~F~ssGREDvDVRmLG~GRPFvlEi~nPr~~~-~~~~~  400 (561)
                      |+||+|+||||||+++|+|++++||||+|+.+++++|+|++++|||||||||||||||+|||||+||.|||++. +..++
T Consensus       295 Y~K~~R~ipQT~W~~~g~r~~~~SVee~I~~~i~~~f~~~~~~Fh~sGREDvDVRmLG~GRPFvlEi~~P~r~~~~~~dl  374 (530)
T 2v9k_A          295 YNKYSRNLPQTPWIIDGERKLESSVEELISDHLLAVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEI  374 (530)
T ss_dssp             EEECCSSCCSSCCBSSSSBSSSCCHHHHHHTTHHHHHTCSEEEEEESSCCCTTCEEEEEEEEEEEEEESCSCCCCCHHHH
T ss_pred             EeeccCCCCCCCcccCCCccCCCCHHHHHHHHHHHhcCCCeEEEeecCCCCCceeecCCCCcEEEEecCccccccchhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998864 56899


Q ss_pred             HHHHHHHhccCCCcEEEEeeEEecchhhhhhhcccccccceEEEEEEEcCCCCHHHHHHHHhcccccceeeeeecCCeEE
Q 008562          401 KEIESKINSLENKLVRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQTISSLKETVRCYQILQKTPIRV  480 (561)
Q Consensus       401 ~~l~~~In~~~~~~V~v~~L~~v~r~~~~~ik~~e~~k~K~Y~alv~~~~~v~~e~l~~l~~~~~~~~~~~I~QkTP~RV  480 (561)
                      ++|+++||+. .+.|+|++|++++++++..||+|+++|.|.|+|+||+++++++++|+.+..+++    ++|.||||+||
T Consensus       375 ~~le~~IN~~-~~~V~V~~L~~v~~~~~~~ik~ge~~~~K~Y~alv~~~~~v~~e~l~~~~~l~~----l~I~QrtP~RV  449 (530)
T 2v9k_A          375 KELQQKINNS-SNKIQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDIEFLNDIKD----LKIDQKTPLRV  449 (530)
T ss_dssp             HHHHHHHHTT-CSSEEEEEEEEECTHHHHHHHHHHHHCCEEEEEEEEESSCCCHHHHGGGGGCCS----EEEEEECCGGG
T ss_pred             HHHHHHHhcc-CCcEEEEeeEEEcHHHHHHHhcccccCCeEEEEEEEEcCCCCHHHHHHHHhcCC----ceeeccCCeEE
Confidence            9999999974 567999999999999999999999999999999999999999999999888999    99999999999


Q ss_pred             EeecCCCceeeEEEEEEEEEEcCCccEEEEEEEecCCceeeEeeeCCCCCcCcchhhhcCCccEEEEEEEEEEecc
Q 008562          481 LHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSILGCRAEILQLDVTDVKMN  556 (561)
Q Consensus       481 lhRR~~~~R~R~Iy~~~~~~i~~~~~~f~l~i~tqaGtYIKEfVhGD~GRT~PSl~~iLg~~adileLDV~~V~~d  556 (561)
                      +|||++++|+|+||+|++..+++  ++|+|+|.||||||||||||||||||+||||++||++|+|++|||++|+||
T Consensus       450 ~hRR~~~~R~R~I~~i~~~~~~~--~~~~l~i~~eaGtYIKelvhGD~GRT~Psl~~lLg~~a~i~eLDV~~V~~d  523 (530)
T 2v9k_A          450 LHRRPLAVRARVIHFMETQYVDE--HHFRLHLKTQAGTYIKEFVHGDFGRTKPNIGSLMNVTADILELDVESVDVD  523 (530)
T ss_dssp             TTTSCCCEEEEEEEEEEEEEEET--TEEEEEEEECTTCCHHHHHHCTTTTEESCHHHHHTSCEEEEEEEEEEECCC
T ss_pred             EEecCCCccceEEEEEEEEEecC--CEEEEEEEecCCCEEEEEEcCCCCCcCCcHHHHhCCCcEEEEeEEeEEecc
Confidence            99999999999999999999975  999999999999999999999999999999999999999999999999999
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A Back     alignment and structure
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2 Back     alignment and structure
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A Back     alignment and structure
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A Back     alignment and structure
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A Back     alignment and structure
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} SCOP: b.122.1.1 d.265.1.2 Back     alignment and structure
>1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif, RNA-modifying enzyme, lyase; 1.50A {Escherichia coli} SCOP: d.265.1.1 PDB: 2nqp_A 2nr0_A 2nre_A Back     alignment and structure
>1vs3_A TRNA pseudouridine synthase A; TRUA, tRNA modification, structural NPPSFA, national project on protein structural and function analyses; 2.25A {Thermus thermophilus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query561
d2apoa2230 Pseudouridine synthase II TruB {Archaeon Methanoco 98.92
d2ey4a2245 Pseudouridine synthase II TruB {Archaeon Pyrococcu 98.9
d1sgva2233 Pseudouridine synthase II TruB {Mycobacterium tube 98.34
d1k8wa5242 Pseudouridine synthase II TruB {Escherichia coli [ 98.34
d1r3ea2228 Pseudouridine synthase II TruB {Thermotoga maritim 98.29
d1dj0a_264 Pseudouridine synthase I TruA {Escherichia coli [T 91.89
>d2apoa2 d.265.1.2 (A:17-246) Pseudouridine synthase II TruB {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase II TruB
domain: Pseudouridine synthase II TruB
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.92  E-value=9.3e-09  Score=99.51  Aligned_cols=152  Identities=21%  Similarity=0.282  Sum_probs=102.4

Q ss_pred             EEEEecCccCCcHHHHHHHHHHHhccCCCc-----EEEEeeEEecchhhhhhhcccccccceEEEEEEEcCCCCHHHHHH
Q 008562          385 LFEIQNAREVPSELLVKEIESKINSLENKL-----VRVKNLKIVGSQGWTLMREGEAEKQKQYAALVWISRPLQDEDFQT  459 (561)
Q Consensus       385 vlEi~nPr~~~~~~~~~~l~~~In~~~~~~-----V~v~~L~~v~r~~~~~ik~~e~~k~K~Y~alv~~~~~v~~e~l~~  459 (561)
                      ++=|-.|.-..|..-+..+....|...-|.     -...++=++--....++-.--....|+|.|.+++....+.+|++.
T Consensus        31 ~l~idKP~G~TS~~vv~~ikk~l~~kKvGH~GTLDP~AtGvL~v~iG~aTKl~~~~~~~~K~Y~~~~~~g~~t~~~di~~  110 (230)
T d2apoa2          31 VVVVDKPRGPTSHEVSTWVKKILNLDKAGHGGTLDPKVTGVLPVALERATKTIPMWHIPPKEYVCLMHLHRDASEEDILR  110 (230)
T ss_dssp             EEEEEECSSSCHHHHHHHHHHHTTCSCEEESSCCCTTCEEEEEEEEGGGGGGGGGTTSSCEEEEEEEEESSCCCHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCCCCcccccCccceeeeeeeecHHHHHHHHHhccCceEEEEEEeeccccHhHHHH
Confidence            444777876667777777777776522110     001122122111111222222334599999999999999999998


Q ss_pred             -HHhcccccceeeeeecCCeEEEeecCCCceeeEEEEEEEEEEcCCccEEEEEEEecCCceeeEeeeCCCCCcCcchhhh
Q 008562          460 -ISSLKETVRCYQILQKTPIRVLHRRSPLEREKIINWMKIEKIAGSSQYFLLHMCTQAGTYIKEFVHGDLGRTNPSIGSI  538 (561)
Q Consensus       460 -l~~~~~~~~~~~I~QkTP~RVlhRR~~~~R~R~Iy~~~~~~i~~~~~~f~l~i~tqaGtYIKEfVhGD~GRT~PSl~~i  538 (561)
                       ++.|.|     .|.|.+|.-...+|.  .|.++||++++...+.  ..+.+++.|++||||+-++|.        ||..
T Consensus       111 ~l~~f~G-----~i~Q~PP~ySAiK~~--~r~~~i~~l~l~~~~~--~~~~~~V~CSkGTYIRSLa~D--------lG~~  173 (230)
T d2apoa2         111 VFKEFTG-----RIYQRPPLKAAVKRR--LRIRKIHELELLDKDG--KDVLFRVKCQSGTYIRKLCED--------IGEA  173 (230)
T ss_dssp             HHHHHSE-----EEECC-------------CEEEEEEEEEEEEET--TEEEEEEEECTTCCHHHHHHH--------HHHH
T ss_pred             HHHhccC-----cccccCCeeeeeccc--cceeeeEEeeeccccC--CeEEEEEEECCCccHHHHHHH--------HHHH
Confidence             899999     899999999999987  7899999999888764  788899999999999999998        9999


Q ss_pred             cCCccEEEEEEEEEE
Q 008562          539 LGCRAEILQLDVTDV  553 (561)
Q Consensus       539 Lg~~adileLDV~~V  553 (561)
                      ||+.|++.+|-=+.+
T Consensus       174 Lg~~a~l~~LrRt~~  188 (230)
T d2apoa2         174 LGTSAHMQELRRTKS  188 (230)
T ss_dssp             TTSCEEEEEEEEEEE
T ss_pred             cCCEEEEeECcCCcc
Confidence            999999999976654
>d2ey4a2 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r3ea2 d.265.1.2 (A:10-237) Pseudouridine synthase II TruB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure