Citrus Sinensis ID: 008574

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-
Protein Sequence
MKQHQELSKTNNMSHSTAATTTFRLRANSKTRESPKQEAGINGVSLSPELKARAKSVPADVKTNNISKSRRALILNKPKSAEGAVGSHKDDEVKVFGRSLNRPVVEQFARPRRQRIVDANPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIANKLEHSIVMTDAISETSINTPPSEPKIPIRNAAGVERKPQAYPSMPAPLPPPPPPRPPARAAATQKTPSFAQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDKSERSIQRLVKLRNSVMHSYKDCKIPVDWMLDSGIISKIKQASMKLAQMYMKRVTRELELVHNSDRESTQEALLLQGLHFAYRAHQFVGGLDSETLCAFEEIRQRVPQHLGGSHKLLAGISSS
Secondary Structure (PSIPRED)
cccHHHHHHcccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHccccccccccccccccHHHHHccccccccHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHccccccccccccccccccEEcccccccccccccccEEEEccccccccccccccccccccccHccEEEEEccccccccccccccHcHEEEEEEEccccEEEEEccccccccccccccHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccEEEEcccc
Coil and Loop (DISEMBL)
mkqhqelsktnnmshstaaTTTFRlransktrespkqeagingvslsPELKAraksvpadvktnnisKSRRALILnkpksaegavgshkddevkvfgrslnrpvveqfarprrqrivdanpgkiedglMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQReavgeyqspkfKDVQKLIANKLEHSIVMTDaisetsintppsepkipirnaagverkpqaypsmpaplpppppprpparaaatqktpSFAQLYHSLTKqvekkdlpspvnqkrpavsiaHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLENEIssyrddtnvpFGAALKKMASLLDKSERSIQRLVKLRNSVmhsykdckipvdwmldsgIISKIKQASMKLAQMYMKRVTRELELVHNSDRESTQEALLLQGLHFAYRAhqfvggldsetlCAFEEIRQRVpqhlggshkllagisss
Flexible Loop (DISEMBL)
mkqhqelsktnnmshstaatttfrlransktrespkqeagingvslspelkaraksvpadvktnnisksrralilnkpksaegavgshkddevkvfgrslnrpvveqfarprrqrivdanpgkiedglmdKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKiaslssreqreavgeyqspkfkdVQKLIANKLEHSIVMTDAIsetsintppsepkipIRNAAGVERKPQAYPSMPAPLPPPPPPRPPARAAATQKTPSFAQLYHSLTKqvekkdlpspvnqkrpaVSIAHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAvlkhfkwpekkaDAMREAAVEYRDLKQLENEissyrddtnvPFGAALKKMASLLDKSERSIQRLVKlrnsvmhsykdckipvdwmLDSGIISKIKQASMKLAQMYMKRVTRELELVHNSDRESTQEALLLQGLHFAYRAHQFVGGLDSETLCAFEEIRQrvpqhlggshkllagisss
Low Complexity Region (SEG)
MKQHQELSKTNNMSHSTAATTTFRLRANSKTRESPKQEAGINGVSLSPELKARAKSVPADVKTNNISKSRRALILNKPKSAEGAVGSHKDDEVKVFGRSLNRPVVEQFARPRRQRIVDANPGKIEDGLMDkkkkefeekLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIANKLEHSIVMTDAISETSINTPPSEPKIPIRNAAGVERKpqaypsmpaplpppppprpparaaaTQKTPSFAQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDKSERSIQRLVKLRNSVMHSYKDCKIPVDWMLDSGIISKIKQASMKLAQMYMKRVTRELELVHNSDRESTQEALLLQGLHFAYRAHQFVGGLDSETLCAFEEIRQRVPQHLGGSHKLLAGISSS
Disordered region (IsUnstruct)
************************************************************************************************************************************************NLVKDLQSEVFALKAEFVKA************************************************QKLIANKLEHSIVM******************************************************************************************AHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPE*********AVEYR****************NVPFGAALKKMA*LL*****SIQRLVKLRNSVMHSYKDCKIPVDWMLDSGIISKIKQASMKLAQMYMKRVTRELELVH*******QEALLLQGLHFAYRAHQFVGGLDSETLCAFEEIRQRVP****************
Disordered Region (DISOPRED)
********************************************************************************************************************************************************************************************************************************************************************************************************************************************LAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLENEISSYR******FGAALKKMASLLDKSER*****************DCKIPVDWMLDSGIISKIKQASMKLAQM***********************LLLQGLHFAYRAHQFVGGLDSETLCAFEEIRQ************LAGIS**
Disordered Region (DISEMBL)
***************STAATTTFRLR***************NGVSLSPELKARAKSVPADVKTNNISKSRRALILNKP************DEVKVFGRSLNRPVVEQFARPRRQRIVDANPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS***********QSPKFKDVQKLIANKLEHSIVMTDAISETSINTPPSEPKIPIRNAAGVERKPQAYPSMPAPLP****************TPSFAQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDKSERSIQRLVKLRNSVMHSYKDCKIPVDWMLDSGIISKIKQASMKLAQMYMKRVTRELELVHNSDRESTQEALLLQGLHFAYRAHQFVGGLDSETLCAFEEIRQRVPQHLGGSHKLLAGISSS
Disordered Region (DISPRO)
*********************************************************PAD***NNISKSRRALILNKPKSA***VGSHKDDEVKVFGRSLNRPVVEQFAR**********************KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS**********QSPKFKDVQKLIANKL***************************************PSMPAPL******************PS*********K**********************SSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDKSERSIQRLVKLRNSVMHSYKDCKIPVDWMLDSGIISKIKQASMKLAQMYMKRVTRELELVHNSDRESTQEALLLQGLHFAYRAHQFVGGLDSETLCAFEEIRQRVPQHLGG**K********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKQHQELSKTNNMSHSTAATTTFRLRANSKTRESPKQEAGINGVSLSPELKARAKSVPADVKTNNISKSRRALILNKPKSAEGAVGSHKDDEVKVFGRSLNRPVVEQFARPRRQRIVDANPGKIEDGLMDKKxxxxxxxxxxxxxxxxxxxxxVFAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEQREAVGEYQSPKFKDVQKLIANKLEHSIVMTDAISETSINTPPSEPKIPIRNAAGVERKPQAYPSMPAPLPPPPPPRPPARAAATQKTPSFAQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKxxxxxxxxxxxxxxxxxxxxxxxxxxxxTNVPFGAALKKMASLLDKSERSIQRLVKLRNSVMHSYKDCKIPVDWMLDSGIISKIKQASMKLAQMYMKRVTRELELVHNSDRESTQEALLLQGLHFAYRAHQFVGGLDSETLCAFEEIRQRVPQHLGGSHKLLAGISSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	561	2.2.26 [Sep-21-2011]
Q9LI74	1004	Protein CHUP1, chloroplas	no	no	0.479	0.267	0.503	5e-76
Q1PEB4	724	Uncharacterized protein A	no	no	0.427	0.331	0.219	2e-08

>sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1

 Score =  285 bits (730), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 136/270 (50%), Positives = 191/270 (70%), Gaps = 1/270 (0%)

Query: 281 TQKTPSFAQLYHSLTKQVEKKD-LPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADI 339
             + P   + Y SL K+  KK+  PS ++      S A ++++GEI+NRS  LLA+KAD+
Sbjct: 718 VHRAPELVEFYQSLMKRESKKEGAPSLISSGTGNSSAARNNMIGEIENRSTFLLAVKADV 777

Query: 340 ETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMR 399
           ET+G F+ SL  +V A+++T+IEDLL FV WLD+ELS L DERAVLKHF WPE KADA+R
Sbjct: 778 ETQGDFVQSLATEVRASSFTDIEDLLAFVSWLDEELSFLVDERAVLKHFDWPEGKADALR 837

Query: 400 EAAVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDKSERSIQRLVKLRNSVMHSYK 459
           EAA EY+DL +LE +++S+ DD N+    ALKKM  LL+K E+S+  L++ R+  +  YK
Sbjct: 838 EAAFEYQDLMKLEKQVTSFVDDPNLSCEPALKKMYKLLEKVEQSVYALLRTRDMAISRYK 897

Query: 460 DCKIPVDWMLDSGIISKIKQASMKLAQMYMKRVTRELELVHNSDRESTQEALLLQGLHFA 519
           +  IPVDW+ D+G++ KIK +S++LA+ YMKRV  EL+ V  SD++  +E LLLQG+ FA
Sbjct: 898 EFGIPVDWLSDTGVVGKIKLSSVQLAKKYMKRVAYELDSVSGSDKDPNREFLLLQGVRFA 957

Query: 520 YRAHQFVGGLDSETLCAFEEIRQRVPQHLG 549
           +R HQF GG D+E++ AFEE+R R     G
Sbjct: 958 FRVHQFAGGFDAESMKAFEELRSRAKTESG 987

Required for the positioning and movement of chloroplasts. Interacts with profilin and actin independent of its polymerization status. Regulates chloroplast localization by anchoring chloroplasts to the plasma membrane and forming a bridge to the actin cytoskeleton.
Arabidopsis thaliana (taxid: 3702)

>sp|Q1PEB4|Y4498_ARATH Uncharacterized protein At4g04980 OS=Arabidopsis thaliana GN=At4g04980 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 124/282 (43%), Gaps = 42/282 (14%)

Query: 282 QKTPSFAQLYHSLTKQVEKKDLP----------SPVNQKRPAVSIAHSSI---VGEIQNR 328
           +++   A LY +L  ++E + +           + V +K P V +A S +   + E+  R
Sbjct: 435 RRSAQIANLYWALKGKLEGRGVEGKTKKASKGQNSVAEKSP-VKVARSGMADALAEMTKR 493

Query: 329 SAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHF 388
           S++   I+ D++     I  L   + +    ++++LLEF   ++  L  L DE  VL  F
Sbjct: 494 SSYFQQIEEDVQKYAKSIEELKSSIHSFQTKDMKELLEFHSKVESILEKLTDETQVLARF 553

Query: 389 K-WPEKKADAMREAAVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDKSERSIQRL 447
           + +PEKK + +R A   Y+ L  +  E+ +++     P    L K+    +K +  I+ +
Sbjct: 554 EGFPEKKLEVIRTAGALYKKLDGILVELKNWK--IEPPLNDLLDKIERYFNKFKGEIETV 611

Query: 448 VKLRNSVMHSYKDCKIPVDWMLDSGIISKIKQASMKLAQMYMKRVTRELELVHNSDREST 507
            + ++     +K   I +D+     ++ ++K+  + ++   M       EL     RE+ 
Sbjct: 612 ERTKDEDAKMFKRYNINIDFE----VLVQVKETMVDVSSNCM-------ELALKERREAN 660

Query: 508 QEA--------------LLLQGLHFAYRAHQFVGGLDSETLC 535
           +EA               L +   FA++ + F GG D    C
Sbjct: 661 EEAKNGEESKMKEERAKRLWRAFQFAFKVYTFAGGHDERADC 702

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	561
297736821	572	unnamed protein product [Vitis vinifera]	0.905	0.888	0.645	1e-173
359477354	551	PREDICTED: uncharacterized protein LOC10	0.905	0.921	0.645	1e-173
356558493	576	PREDICTED: uncharacterized protein LOC10	0.971	0.946	0.570	1e-156
356532863	562	PREDICTED: uncharacterized protein LOC10	0.975	0.973	0.575	1e-150
356545814	565	PREDICTED: uncharacterized protein LOC10	0.921	0.915	0.580	1e-150
255556608	532	conserved hypothetical protein [Ricinus	0.928	0.979	0.598	1e-150
357479207	574	Protein CHUP1 [Medicago truncatula] gi|3	0.959	0.937	0.555	1e-149
356565529	567	PREDICTED: uncharacterized protein LOC10	0.894	0.885	0.540	1e-145
297847080	567	hypothetical protein ARALYDRAFT_473964 [	0.926	0.917	0.513	1e-136
449459796	521	PREDICTED: uncharacterized protein LOC10	0.912	0.982	0.526	1e-136

>gi|297736821|emb|CBI26022.3| unnamed protein product [Vitis vinifera]

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 339/525 (64%), Positives = 402/525 (76%), Gaps = 17/525 (3%)

Query: 41  INGVSL-SPELKARAKSVPADVKTNNISKSRRALILNKPKSAEGAVGSHK---DDEVKVF 96
           +NGVS  SP  + RA+S P  ++ NN  K+RR+L+LNKPKS + A+GS K    +EVKV 
Sbjct: 61  LNGVSSPSPAPRPRARSGP--LEMNNSHKARRSLLLNKPKSGDHALGSQKPRDAEEVKVM 118

Query: 97  GRSLNRPVVEQFARPRRQRIVDANPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFA 156
           GRS NRPVV+Q A PRR       P   E    D K KE +EKL L +NL+ +LQSEV  
Sbjct: 119 GRSRNRPVVDQLA-PRR-------PS--EGPEPDDKTKELQEKLDLRQNLINNLQSEVLG 168

Query: 157 LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLI 216
           LKAE  KAQS N EL+  N KL EDL AA AKI +L+SR+Q E+V EYQSPKFKD+QKLI
Sbjct: 169 LKAELDKAQSFNLELQSLNAKLTEDLAAALAKITALTSRQQEESVTEYQSPKFKDIQKLI 228

Query: 217 ANKLEHSIVMTDAISETSINTPPSEPKIPIRNAAGVERKPQAYPSMPAPLPPPPPPRPPA 276
           ANKLEH  +  +A +E S    PS   +P R    ++ + +  P    P PP PPP+PPA
Sbjct: 229 ANKLEHPKIKQEASNEASTVQAPSAASVP-RVPRAMDSQRKVPPCPAPPPPPLPPPQPPA 287

Query: 277 RAAATQKTPSFAQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIK 336
           RAAAT+K P+  + YHSLTK V K+D     N  +  VS AHSSIVGEIQNRSAH LAIK
Sbjct: 288 RAAATRKAPTLVEFYHSLTKGVGKRDFAQSGNHNKLVVSSAHSSIVGEIQNRSAHQLAIK 347

Query: 337 ADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKAD 396
           ADIETKG FIN LIQ+VLAA+Y+++ED+++FVDWLD ELS+LADERAVLKHFKWPEKKAD
Sbjct: 348 ADIETKGDFINGLIQRVLAASYSDMEDIVKFVDWLDNELSTLADERAVLKHFKWPEKKAD 407

Query: 397 AMREAAVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDKSERSIQRLVKLRNSVMH 456
           AMREAA+EYRDLK LE+E+S Y+D+ NVP G ALKKMA LLDKSERSIQRL+KLRNSV+ 
Sbjct: 408 AMREAAIEYRDLKLLESEVSCYKDNANVPCGVALKKMAGLLDKSERSIQRLIKLRNSVVR 467

Query: 457 SYKDCKIPVDWMLDSGIISKIKQASMKLAQMYMKRVTRELELVHNSDRESTQEALLLQGL 516
           SY++C IP  WMLDSGI+SKIKQAS+ LA+MYM+RV  ELE V NS+RES+QEALLLQG+
Sbjct: 468 SYQECGIPTGWMLDSGIVSKIKQASINLAKMYMQRVAMELESVRNSERESSQEALLLQGV 527

Query: 517 HFAYRAHQFVGGLDSETLCAFEEIRQRVPQHLGGSHKLLAGISSS 561
           HFAYRAHQF GGLDSETLCAFEEIRQRVP+HLGGS +LLAGI SS
Sbjct: 528 HFAYRAHQFAGGLDSETLCAFEEIRQRVPEHLGGSRELLAGIPSS 572

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477354|ref|XP_002275219.2| PREDICTED: uncharacterized protein LOC100256278 [Vitis vinifera]

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 339/525 (64%), Positives = 402/525 (76%), Gaps = 17/525 (3%)

Query: 41  INGVSL-SPELKARAKSVPADVKTNNISKSRRALILNKPKSAEGAVGSHK---DDEVKVF 96
           +NGVS  SP  + RA+S P  ++ NN  K+RR+L+LNKPKS + A+GS K    +EVKV 
Sbjct: 40  LNGVSSPSPAPRPRARSGP--LEMNNSHKARRSLLLNKPKSGDHALGSQKPRDAEEVKVM 97

Query: 97  GRSLNRPVVEQFARPRRQRIVDANPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFA 156
           GRS NRPVV+Q A PRR       P   E    D K KE +EKL L +NL+ +LQSEV  
Sbjct: 98  GRSRNRPVVDQLA-PRR-------PS--EGPEPDDKTKELQEKLDLRQNLINNLQSEVLG 147

Query: 157 LKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLI 216
           LKAE  KAQS N EL+  N KL EDL AA AKI +L+SR+Q E+V EYQSPKFKD+QKLI
Sbjct: 148 LKAELDKAQSFNLELQSLNAKLTEDLAAALAKITALTSRQQEESVTEYQSPKFKDIQKLI 207

Query: 217 ANKLEHSIVMTDAISETSINTPPSEPKIPIRNAAGVERKPQAYPSMPAPLPPPPPPRPPA 276
           ANKLEH  +  +A +E S    PS   +P R    ++ + +  P    P PP PPP+PPA
Sbjct: 208 ANKLEHPKIKQEASNEASTVQAPSAASVP-RVPRAMDSQRKVPPCPAPPPPPLPPPQPPA 266

Query: 277 RAAATQKTPSFAQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIK 336
           RAAAT+K P+  + YHSLTK V K+D     N  +  VS AHSSIVGEIQNRSAH LAIK
Sbjct: 267 RAAATRKAPTLVEFYHSLTKGVGKRDFAQSGNHNKLVVSSAHSSIVGEIQNRSAHQLAIK 326

Query: 337 ADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKAD 396
           ADIETKG FIN LIQ+VLAA+Y+++ED+++FVDWLD ELS+LADERAVLKHFKWPEKKAD
Sbjct: 327 ADIETKGDFINGLIQRVLAASYSDMEDIVKFVDWLDNELSTLADERAVLKHFKWPEKKAD 386

Query: 397 AMREAAVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDKSERSIQRLVKLRNSVMH 456
           AMREAA+EYRDLK LE+E+S Y+D+ NVP G ALKKMA LLDKSERSIQRL+KLRNSV+ 
Sbjct: 387 AMREAAIEYRDLKLLESEVSCYKDNANVPCGVALKKMAGLLDKSERSIQRLIKLRNSVVR 446

Query: 457 SYKDCKIPVDWMLDSGIISKIKQASMKLAQMYMKRVTRELELVHNSDRESTQEALLLQGL 516
           SY++C IP  WMLDSGI+SKIKQAS+ LA+MYM+RV  ELE V NS+RES+QEALLLQG+
Sbjct: 447 SYQECGIPTGWMLDSGIVSKIKQASINLAKMYMQRVAMELESVRNSERESSQEALLLQGV 506

Query: 517 HFAYRAHQFVGGLDSETLCAFEEIRQRVPQHLGGSHKLLAGISSS 561
           HFAYRAHQF GGLDSETLCAFEEIRQRVP+HLGGS +LLAGI SS
Sbjct: 507 HFAYRAHQFAGGLDSETLCAFEEIRQRVPEHLGGSRELLAGIPSS 551

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558493|ref|XP_003547541.1| PREDICTED: uncharacterized protein LOC100820086 [Glycine max]

 Score =  558 bits (1437), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 321/563 (57%), Positives = 393/563 (69%), Gaps = 18/563 (3%)

Query: 10  TNNMSHSTAATTTFRLRANSKTRESPKQ--EAGINGVSLSPELKARAKSVPADVKTNNIS 67
           T N+     + T  RLR  SK RE PK   E   NG+  +P L+ RAKSV  ++K N  S
Sbjct: 21  TKNVIKIQNSLTPSRLRLPSKYREPPKTPPEVVNNGMVSTP-LR-RAKSVTPELKHN--S 76

Query: 68  KSRRALILNKPKSAEGAVGSHKD----DEVKVFGRSLNRPVVEQFARPRRQRIVDANPGK 123
           + ++ L+LNK K  E  +G+ +     +E KV  R +    VEQF+RPR   + D    +
Sbjct: 77  RIKKGLVLNKAKPNEEVLGTTQRGREVEEAKVVSRFVRPHAVEQFSRPR-SGVGDFAFKR 135

Query: 124 IEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLV 183
            ++    K KKE  EKL  SE+L+K+LQSEV ALKAE  K + LN ELE  N+KL EDL 
Sbjct: 136 DKEDPDGKSKKELMEKLEASESLIKNLQSEVLALKAELEKVKGLNVELESNNRKLTEDLA 195

Query: 184 AAEAKIASLSSREQREAVGEYQSPKFKDVQKLIANKLEHSIVMTDAISETSI--NTPPSE 241
           AAEAK+ SLS  E+    GE+QSPKFK +QKLIA+KLE SIV  ++I+       + P++
Sbjct: 196 AAEAKVVSLSGNEKPN--GEHQSPKFKLIQKLIADKLERSIVKKESITNGGFVKASIPAQ 253

Query: 242 PKIPIRNAAGVERKPQAYPSMPAPLPPPPPPRPP---ARAAATQKTPSFAQLYHSLTKQV 298
             IP        RKP     +P P PP PP  P    A+A  TQ+ P+F +L+H+L  Q 
Sbjct: 254 TAIPEVTTTRTGRKPTCNSCLPPPPPPMPPSIPSRPIAKANNTQRAPAFVKLFHTLKNQE 313

Query: 299 EKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAY 358
             K       Q+RP     HSSIVGEIQNRSAHLLAI+ADIETKG FIN LI+KV+ AAY
Sbjct: 314 GMKSTTGSGKQQRPVAVNVHSSIVGEIQNRSAHLLAIRADIETKGEFINDLIKKVVEAAY 373

Query: 359 TNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLENEISSY 418
           T+IED+L FV+WLD ELSSLADERAVLKHF WPE+KADA+REAAVEYR+LK LE EISS+
Sbjct: 374 TDIEDVLNFVNWLDGELSSLADERAVLKHFNWPERKADAIREAAVEYRELKSLEQEISSF 433

Query: 419 RDDTNVPFGAALKKMASLLDKSERSIQRLVKLRNSVMHSYKDCKIPVDWMLDSGIISKIK 478
           +DD  +P GA+L+KMASLLDKSE SIQRL+KLRNS M SY++ KIP  WMLDSGI++KIK
Sbjct: 434 KDDPEIPCGASLRKMASLLDKSESSIQRLIKLRNSAMRSYQEYKIPTAWMLDSGIMTKIK 493

Query: 479 QASMKLAQMYMKRVTRELELVHNSDRESTQEALLLQGLHFAYRAHQFVGGLDSETLCAFE 538
           QASM L +MYMKRVT EL    NSDR+S+QE+LLLQG+HFAYRAHQF GGLD+ETLCAFE
Sbjct: 494 QASMTLVKMYMKRVTMELGSARNSDRQSSQESLLLQGMHFAYRAHQFAGGLDAETLCAFE 553

Query: 539 EIRQRVPQHLGGSHKLLAGISSS 561
           EIRQ VP HL GS +LLAGI+SS
Sbjct: 554 EIRQHVPAHLAGSRELLAGIASS 576

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532863|ref|XP_003534989.1| PREDICTED: uncharacterized protein LOC100809254 [Glycine max]

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 328/570 (57%), Positives = 393/570 (68%), Gaps = 23/570 (4%)

Query: 7   LSKTNNMSHSTAATTTFRLRANSKTRESPK---QEAGINGVSLSPELKARAKSVPADVKT 63
           ++ T N+     + T  RLR  SK RE PK   +    N V  +P    RAKSV  ++K 
Sbjct: 1   MTTTKNVIKLQNSLTPSRLRLPSKYREPPKTPPEVVVNNVVVSTPS--RRAKSVTPELKH 58

Query: 64  NNISKSRRALILNKPKSAEGAVGS----HKDDEVKVFGRSLNRPVVEQFARPRRQRIVDA 119
           N  S+ +R L+LNK K  E  VG+     + +E KV  R +   VVEQFARPR      A
Sbjct: 59  N--SRIKRGLVLNKAKPNEEVVGTTQRGREAEETKVVARFVRPHVVEQFARPRNGAGDFA 116

Query: 120 NPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLV 179
                ED   +K KKE  EKL  SE+L+K+LQSEV ALKAE  K + L  ELE  N+KL 
Sbjct: 117 FKRDKEDS-DEKSKKELMEKLEASESLIKNLQSEVQALKAELEKVKGLKVELESHNRKLT 175

Query: 180 EDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIANKLEHSIVMTDAIS-----ETS 234
           EDL AAE K+ SL   E+    GE+QSPKFK +QKLIA+KLE SIV  +AI+     E S
Sbjct: 176 EDLAAAEVKVVSLGGNEKPN--GEHQSPKFKHIQKLIADKLERSIVKKEAIANGGFVEAS 233

Query: 235 INTPPSEPKIPIRNAAGVERKPQAYPSMPAPLPPPPPPRPP---ARAAATQKTPSFAQLY 291
           I  P + P IP    A   RKP     +P P PP PP  P    A+A+ TQ+ P+F +L+
Sbjct: 234 IPPPTAIPAIPDAPTARKGRKPTPNSCLPPPPPPMPPSIPSRPIAKASNTQRVPAFVKLF 293

Query: 292 HSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQ 351
           H+L  Q   K     V Q++P     HSSIVGEIQNRSAHLLAI+ADIETKG FIN LI+
Sbjct: 294 HTLKNQEGMKSTTGTVKQQKPVSVNVHSSIVGEIQNRSAHLLAIRADIETKGAFINDLIK 353

Query: 352 KVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQL 411
           KV+ AAYT+IED+L FV+WLD ELSSLADERAVLKHF WPE+KADAMREAAVEYR+LK L
Sbjct: 354 KVVEAAYTDIEDVLNFVNWLDGELSSLADERAVLKHFNWPERKADAMREAAVEYRELKLL 413

Query: 412 ENEISSYRDDTNVPFGAALKKMASLLDKSERSIQRLVKLRNSVMHSYKDCKIPVDWMLDS 471
           E EISS++DD  +P GA+L+KMASLLDKSE SIQRL+KL+NS M SY++ KIP  WMLDS
Sbjct: 414 EQEISSFKDDPEIPCGASLRKMASLLDKSESSIQRLIKLQNSAMRSYQEYKIPTAWMLDS 473

Query: 472 GIISKIKQASMKLAQMYMKRVTRELELVHNSDRESTQEALLLQGLHFAYRAHQFVGGLDS 531
           GI++KIKQASM L +MYMKRVT EL    NSDR S+QE+LLLQG+HFAYRAHQF GGLD+
Sbjct: 474 GIMTKIKQASMILVKMYMKRVTMELGSARNSDR-SSQESLLLQGMHFAYRAHQFAGGLDA 532

Query: 532 ETLCAFEEIRQRVPQHLGGSHKLLAGISSS 561
           ETLCAFEEIRQ VP HL GS +LLAGI+SS
Sbjct: 533 ETLCAFEEIRQHVPGHLAGSRELLAGIASS 562

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545814|ref|XP_003541329.1| PREDICTED: uncharacterized protein LOC100798183 [Glycine max]

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 318/548 (58%), Positives = 387/548 (70%), Gaps = 31/548 (5%)

Query: 24  RLRANSKTRESPKQEAGINGVSLSPELKARAKSVPADVKTNNISKSRRALILNKPKSAEG 83
           RLRA+SK  +SP +   +N  S+S     RA+SVP D+K  N+S+++R +++NKPK  E 
Sbjct: 35  RLRASSKAPKSPPEV--VNRESIS---STRAESVPPDLK--NVSRAKRGVVVNKPKLNEE 87

Query: 84  AVGSHKDDEVKVFGRSLNRPVVEQFARPRRQRIVDANPGKIED--GLMDKKKKEFEEKLM 141
            +GS K +E K+             ARPRR R+ D    K ED      KKK+  +EKL 
Sbjct: 88  VLGSQKAEEGKIV----------IVARPRR-RVGDFGSRKSEDDDSHGKKKKELLQEKLE 136

Query: 142 LSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAV 201
           +SENL+K LQSEV AL+ E  + +SLN ELE QN KL ++L AAEAKI+++      + +
Sbjct: 137 VSENLIKSLQSEVLALREELDRVKSLNVELESQNTKLTQNLAAAEAKISNVGIGNNGKPI 196

Query: 202 GEYQSPKFKDVQKLIANKLEHSIVMTDAISE-----TSINTPPSEPKIPIRNAAGVERKP 256
           GE++SPKFKD+QKLIA KLE S V  +   E      SI+ P      P      +    
Sbjct: 197 GEHRSPKFKDIQKLIAEKLERSRVKKEGTPEIIFAKASISAPTPSYAPPPPPPPPITSVG 256

Query: 257 QAYPSMPAPLPPPPPPRPP------ARAAATQKTPSFAQLYHSLTKQVEKKDLPSPVNQK 310
           +  PS     PPPPPP PP      AR A TQK P+  +L+HSL  +  K D    VN +
Sbjct: 257 RNSPSNTCLPPPPPPPPPPIPTPPLARLANTQKAPTIVELFHSLKNKDGKIDSKGSVNHQ 316

Query: 311 RPAVSIAHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDW 370
           RP V  AHSSIVGEIQNRSAHLLAI+ADIETKG FIN LI+KV+ AA+T+IE++L+FVDW
Sbjct: 317 RPVVISAHSSIVGEIQNRSAHLLAIRADIETKGEFINDLIKKVVDAAFTDIEEVLKFVDW 376

Query: 371 LDKELSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLENEISSYRDDTNVPFGAAL 430
           LD +LSSLADE AVLKHFKWPEKKADAMREAAVEY +LK LE EISSY+DD ++P GAAL
Sbjct: 377 LDGKLSSLADECAVLKHFKWPEKKADAMREAAVEYHELKMLEQEISSYKDDPDIPCGAAL 436

Query: 431 KKMASLLDKSERSIQRLVKLRNSVMHSYKDCKIPVDWMLDSGIISKIKQASMKLAQMYMK 490
           KKMASLLDKSERSIQRL+KLR+SV HSY+   IP  WMLDSGI+SKIKQASM L + YMK
Sbjct: 437 KKMASLLDKSERSIQRLIKLRSSVTHSYQMYNIPTAWMLDSGIMSKIKQASMTLVKTYMK 496

Query: 491 RVTRELELVHNSDRESTQEALLLQGLHFAYRAHQFVGGLDSETLCAFEEIRQRVPQHLGG 550
           RVT ELE + NSDRES Q++LLLQG+HFAYRAHQF GGLDSET+CAFEEIRQRVP +L G
Sbjct: 497 RVTMELESIRNSDRESIQDSLLLQGVHFAYRAHQFTGGLDSETMCAFEEIRQRVPGNLTG 556

Query: 551 SHKLLAGI 558
           S +LLAGI
Sbjct: 557 SRELLAGI 564

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556608|ref|XP_002519338.1| conserved hypothetical protein [Ricinus communis] gi|223541653|gb|EEF43202.1| conserved hypothetical protein [Ricinus communis]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 328/548 (59%), Positives = 406/548 (74%), Gaps = 27/548 (4%)

Query: 20  TTTFRLRANSKTRESPKQEAGINGVSLSPELKARAKSVPADVKTNNISKSRRALILN-KP 78
           TT  R R NSK   +PK E         P  K RA+SVP D K +  +K RR++++N KP
Sbjct: 5   TTPSRFRLNSK---APKPEP--------PAKKERAQSVPPDFKKD--TKLRRSVLVNTKP 51

Query: 79  KSAEGAVGSHKD-DEVKVFGRSLNRPVVEQFARPRRQRIVDANPGKIEDGLMDKKKKEFE 137
           KS +  +GS  +   V     S+NRPV EQF++PR QR    +  KIE+      KKE  
Sbjct: 52  KSRDELLGSQMEVARVVSPSLSVNRPVHEQFSKPRTQR----SARKIEED----TKKELL 103

Query: 138 EKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS-LSSRE 196
           E++ L++NL++DL+S+V +LKAE  KAQSLN ELE QNKKL +DL +AEAK+A+ L++  
Sbjct: 104 ERIELNDNLIQDLKSQVLSLKAELDKAQSLNEELESQNKKLQQDLASAEAKVAAALNNTP 163

Query: 197 QREAVGEYQSPKFKDVQKLIANKLEHSIVMTDAISE-TSINTPPSEPKIP-IRNAAGVER 254
             E++G YQSPKFKD+QKLIANKLE+S V  DA++  TS+ TP   P    I   +  E 
Sbjct: 164 LPESIGGYQSPKFKDIQKLIANKLENSTVKKDAMNGPTSVKTPSPPPPSRPIHLLSKAET 223

Query: 255 KPQAYPSMPAPLPPPPPPRPPARAAATQKTPSFAQLYHSLTKQVEKKDLPSPVNQKRPAV 314
           K  + PS+P P PPPPP RP ARAA   KTP+  + Y SL K  EK+ +    NQ +P V
Sbjct: 224 KAPSCPSLPPPPPPPPPLRPLARAATAPKTPAIVEFYQSLRKHGEKRHVQGHENQYKPVV 283

Query: 315 SIAHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKE 374
           + AHSS+VGEIQNRSAHLLAIK+DIETKG FIN LI+KVLA AYT+IED+L+FVDWLD E
Sbjct: 284 TSAHSSVVGEIQNRSAHLLAIKSDIETKGDFINGLIKKVLAVAYTDIEDVLKFVDWLDGE 343

Query: 375 LSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLENEISSYRDDTNVPFGAALKKMA 434
           LS+LADERAVLKHF WPE+KADA+REAA+EYR LKQLENEISS++DD ++P G+ALKKMA
Sbjct: 344 LSTLADERAVLKHFNWPERKADAIREAAIEYRSLKQLENEISSFKDDPSIPCGSALKKMA 403

Query: 435 SLLDKSERSIQRLVKLRNSVMHSYKDCKIPVDWMLDSGIISKIKQASMKLAQMYMKRVTR 494
            LLDKSER I RLVKLRNSV+ SY++ KIP +WMLDSG++SKIKQASMKLA+MYM+RV  
Sbjct: 404 ILLDKSERGIGRLVKLRNSVLRSYQEWKIPSNWMLDSGMMSKIKQASMKLAKMYMRRVIE 463

Query: 495 ELELVHNSDRESTQEALLLQGLHFAYRAHQFVGGLDSETLCAFEEIRQRVPQHL-GGSHK 553
           ELE+  N+DRES QEAL+LQG++FAYRAHQF G LDSET+CA EEIRQRVP H  GGS +
Sbjct: 464 ELEVGRNTDRESNQEALVLQGVNFAYRAHQFAGSLDSETMCAIEEIRQRVPGHQGGGSRE 523

Query: 554 LLAGISSS 561
           LLA I+S 
Sbjct: 524 LLAAIASC 531

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479207|ref|XP_003609889.1| Protein CHUP1 [Medicago truncatula] gi|355510944|gb|AES92086.1| Protein CHUP1 [Medicago truncatula]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 322/580 (55%), Positives = 396/580 (68%), Gaps = 42/580 (7%)

Query: 1   MKQHQELSKTNNMSHSTAATTTFRLRANSKTRESPKQEAGI-NGVSLSPELKARAKSVPA 59
           +K HQ+   ++N S  T   T  R+RA+SK +ESPK    I N VS       RAKSVP 
Sbjct: 18  LKHHQQQQHSDNKSLQTVPQTRLRVRASSKAKESPKTPPEIVNRVSTISS--TRAKSVPP 75

Query: 60  DVKTNNISKSRRALILNKP-KSAEGAV-GSHKDDEVKVFGRSLNRPVVEQFARPRRQRIV 117
           D+K N  SK++R++ +NK  KS E  V  SHK        +      V   A PRR+RI 
Sbjct: 76  DMKNN--SKAKRSIFMNKVVKSIEEEVESSHKG------SKEGEVAKVVVVAPPRRRRIE 127

Query: 118 DANPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKK 177
           + +P         K+KKE  EKL +SENL+K LQSE+ ALK E  + + LN +LE QN K
Sbjct: 128 EDDPDV-------KEKKELLEKLEVSENLIKSLQSEIKALKDELNQVKGLNIDLESQNIK 180

Query: 178 LVEDLVAAEAKIASL---SSREQREAVGEYQSPKFKDVQKLIANKLEHSIVMTDAISETS 234
           L ++L +AEAKI +    SS  ++E +GE QSPKFKD+QK+IA+KLE S V  +A  E  
Sbjct: 181 LNQNLASAEAKIVAFGTSSSTRKKEPIGERQSPKFKDIQKIIADKLEMSKVKKEANPEV- 239

Query: 235 INTPPSEPKIPIRNAAGVERKPQAYPSMPAPLPP-------------PPPPRPPARAAAT 281
           I    S P  PI N A +    +   S+    PP             P P RP A+ A T
Sbjct: 240 IFVKSSIPA-PIPNHAAI----REITSLGRKSPPNHCLMPPPPPPPPPIPSRPLAKLANT 294

Query: 282 QKTPSFAQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADIET 341
           QK P+  QL+HSL  Q  KKDL   +N ++P  + AH+SIVGEIQNRSAHLLAI+ DI+T
Sbjct: 295 QKAPAVVQLFHSLKNQDTKKDLKGSINHQKPITNSAHNSIVGEIQNRSAHLLAIREDIQT 354

Query: 342 KGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREA 401
           KG FIN LI KV+ A+Y +IED+L+FVDWLD ELS+LADERAVLKHFKWPE+KAD MREA
Sbjct: 355 KGEFINGLINKVVDASYVDIEDVLKFVDWLDGELSTLADERAVLKHFKWPERKADTMREA 414

Query: 402 AVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDKSERSIQRLVKLRNSVMHSYKDC 461
           AVEYR+LK LE EISSY+DD ++P  A+LKK+ASLLDKSERSIQ+L+ LRNSV+ SY+  
Sbjct: 415 AVEYRELKMLEQEISSYKDDPDIPCVASLKKIASLLDKSERSIQKLIVLRNSVIRSYQMY 474

Query: 462 KIPVDWMLDSGIISKIKQASMKLAQMYMKRVTRELELVHNSDRESTQEALLLQGLHFAYR 521
            IP  WMLDSGI SKIKQ+SM L +MYMKR+T ELE + NSDRES Q++LLLQG+HFAYR
Sbjct: 475 NIPTAWMLDSGISSKIKQSSMTLVKMYMKRLTMELESIRNSDRESNQDSLLLQGVHFAYR 534

Query: 522 AHQFVGGLDSETLCAFEEIRQRVPQHLGGSHKLLAGISSS 561
           AHQF GGLDSETLCAFEEIRQRVP HL GS +LLA I+SS
Sbjct: 535 AHQFAGGLDSETLCAFEEIRQRVPGHLAGSRELLACIASS 574

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565529|ref|XP_003550992.1| PREDICTED: uncharacterized protein LOC100820135 [Glycine max]

 Score =  523 bits (1347), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 306/566 (54%), Positives = 379/566 (66%), Gaps = 64/566 (11%)

Query: 24  RLRANSKTRESPKQEAGINGVSLSPELKARAKSVPADVKTNNISKSRRALILNKPKSAEG 83
           RLRA+SK  +SP +   +N  S+S     RAKSVP D+K  N+S+++R +++NKPK  E 
Sbjct: 34  RLRASSKAPKSPPE--IVNRESIS---STRAKSVPPDLK--NVSRAKRGVVVNKPKLNEE 86

Query: 84  AVGSHKDDEVKVFGRSLNRPVVEQFARPRRQRIVDANPGKIEDGLMDKKKKEFEEKLM-L 142
           A         +  G                    D +  K ED   D KKK+  ++ + +
Sbjct: 87  AKVVVVARPRRRVG--------------------DFDLQKNEDDDPDGKKKKELQEKLEV 126

Query: 143 SENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIAS--LSSREQREA 200
           SENL+K LQSEV AL+ E  + +SLN ELE +N KL ++L AAEAKI++  + +  ++  
Sbjct: 127 SENLIKSLQSEVLALREELDRVKSLNVELESRNTKLTQNLAAAEAKISTVDIGNNGKKGP 186

Query: 201 VGEYQSPKFKDVQKLIANKLEHSIVMTDAISE-----TSINTPPSEPKIPIRNAAGVERK 255
           +GE+QSPKFKD+QKLIA KLE S V  +   E      SI+ P     IP   + G +  
Sbjct: 187 IGEHQSPKFKDIQKLIAEKLERSRVKKEGTPEIIFAKASISAPTPSYAIPETTSIGRKSP 246

Query: 256 PQAYPSMPAPLPPPPPP-----RPP------------------ARAAATQKTPSFAQLYH 292
           P         L PPPP      + P                  AR A +QK+P+  +L+H
Sbjct: 247 PNTC------LQPPPPVTSVGRKSPSNTCLQPPPPPPIPTRPLARLANSQKSPAIVELFH 300

Query: 293 SLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQK 352
           SL  +  K D    VN +RP V  AHSSIVGEIQNRSAHLLAI+ADIETKG FIN LI+K
Sbjct: 301 SLKNKDWKIDSKGSVNHQRPVVISAHSSIVGEIQNRSAHLLAIRADIETKGEFINDLIRK 360

Query: 353 VLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLE 412
           V+ AA+T+IE++L+FVDWLD +LSSLADERAVLK FKWPEKKADAMREAAVEY +LK LE
Sbjct: 361 VVDAAFTDIEEVLKFVDWLDVKLSSLADERAVLKPFKWPEKKADAMREAAVEYHELKMLE 420

Query: 413 NEISSYRDDTNVPFGAALKKMASLLDKSERSIQRLVKLRNSVMHSYKDCKIPVDWMLDSG 472
            EISSY+DD ++P GAALKKMASLLDKSERSIQRL+KLR+SV HSY+   IP  WMLDSG
Sbjct: 421 QEISSYKDDPDIPCGAALKKMASLLDKSERSIQRLIKLRSSVTHSYQMYNIPTAWMLDSG 480

Query: 473 IISKIKQASMKLAQMYMKRVTRELELVHNSDRESTQEALLLQGLHFAYRAHQFVGGLDSE 532
           I+S+IKQASM L + YMKRVT ELE + NSDRES Q++LLLQG+HFAYRAHQF GGLDSE
Sbjct: 481 IMSEIKQASMTLVKTYMKRVTMELESIRNSDRESIQDSLLLQGMHFAYRAHQFTGGLDSE 540

Query: 533 TLCAFEEIRQRVPQHLGGSHKLLAGI 558
           T+CAFEEIRQRVP HL GS +LLAGI
Sbjct: 541 TMCAFEEIRQRVPGHLAGSRELLAGI 566

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847080|ref|XP_002891421.1| hypothetical protein ARALYDRAFT_473964 [Arabidopsis lyrata subsp. lyrata] gi|297337263|gb|EFH67680.1| hypothetical protein ARALYDRAFT_473964 [Arabidopsis lyrata subsp. lyrata]

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 302/588 (51%), Positives = 395/588 (67%), Gaps = 68/588 (11%)

Query: 16  STAATTTFRLRA-NSK----TRESPKQEAGINGVSLSPELKARAKSVPADVKTNNISKSR 70
           STA+TT  R+RA NS     ++   + + G+ G         + KS   DVK N+ +K+R
Sbjct: 5   STASTTPSRVRAANSHYSVISKPRAQDDNGLTG--------GKPKSSGHDVK-NDPAKNR 55

Query: 71  RALILNKPKSAEGAVGSHKDDEVKVFG----RSLNRP-VVEQFARPRRQRIVDANPGKIE 125
           R+++L + K  E        +E  V      RS+NRP VVEQF  PRR         K E
Sbjct: 56  RSILLKRAKYGE--------EETAVLAPQRARSVNRPAVVEQFGCPRR-----PISRKTE 102

Query: 126 DGLM-------DKKKK---EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQN 175
           + +M       D+K+K   E EEKL+++E+L+KDLQ +V  LK E  +A++ NAELE +N
Sbjct: 103 ESVMATAVVAEDEKRKRMEELEEKLVVNESLIKDLQLQVLNLKTELEEARNSNAELELKN 162

Query: 176 KKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKLIANKLEHSIVMTDAISETSI 235
           KKL +DL +AEAKI+SLSS ++     E+Q+ +FKD+Q+LIA+KLE S V  +   E+S 
Sbjct: 163 KKLSQDLASAEAKISSLSSNDK--PAKEHQNTRFKDIQRLIASKLEQSKVKKEVAVESSS 220

Query: 236 N-------------------TPPSEPKIPIRNAAGVERKPQAYPSMPAPLPPPPPPRPP- 275
           +                   TPP  PK  +  A+ + ++ ++      P PPPPPP PP 
Sbjct: 221 SIKTRSSPQPPSPPPSRLQPTPPL-PKFLVSPASSLGKRDESSSPFAPPTPPPPPPPPPP 279

Query: 276 ---ARAAATQKTPSFAQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHL 332
              A+AA  QK+P  +QL+  L KQ   +DL   VN  +  V+ AH+SIVGEIQNRSAHL
Sbjct: 280 RPLAKAARAQKSPPVSQLFQLLKKQDNSRDLSQSVNGNQSQVNSAHNSIVGEIQNRSAHL 339

Query: 333 LAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPE 392
           +AIKADIETKG FIN LIQKVL   ++++ED+++FVDWLDKEL++LADERAVLKHFKWPE
Sbjct: 340 IAIKADIETKGDFINDLIQKVLTTCFSDMEDVMKFVDWLDKELATLADERAVLKHFKWPE 399

Query: 393 KKADAMREAAVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDKSERSIQRLVKLRN 452
           KKADA++EAAVEYR+LK+LE E+SSY DD ++ +G ALKKMA+LLDKSE+ I+RLV+LR 
Sbjct: 400 KKADALQEAAVEYRELKKLEKELSSYSDDPSIHYGVALKKMANLLDKSEQRIRRLVRLRG 459

Query: 453 SVMHSYKDCKIPVDWMLDSGIISKIKQASMKLAQMYMKRVTRELELVHNSDRESTQEALL 512
           S M SY+D KIPV+WMLDSG+ISKIK+AS+KLA+ YM RV  EL+   N DRESTQEALL
Sbjct: 460 SSMRSYQDFKIPVEWMLDSGMISKIKRASIKLARTYMNRVANELQSARNLDRESTQEALL 519

Query: 513 LQGLHFAYRAHQFVGGLDSETLCAFEEIRQRVPQHLGGSHKLLAGISS 560
           LQG+ FAYR HQF GGLD ETLCA EEI+QRVP HL  +   +AG  S
Sbjct: 520 LQGVRFAYRTHQFAGGLDPETLCALEEIKQRVPSHLRLARGNMAGTPS 567

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459796|ref|XP_004147632.1| PREDICTED: uncharacterized protein LOC101205525 [Cucumis sativus] gi|449498773|ref|XP_004160629.1| PREDICTED: uncharacterized protein LOC101231677 [Cucumis sativus]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 293/557 (52%), Positives = 368/557 (66%), Gaps = 45/557 (8%)

Query: 9   KTNNMSHSTAATTTFRLRANSKTRESPKQEAGINGVSLSPELKARAKSVPADVKTNNISK 68
           K+N + +ST  ++    R + K  ESPK+   ++ V  +P+   + +S          SK
Sbjct: 6   KSNAVKNSTTMSSRGG-RVSLKAMESPKRVVSVSAVESTPQSGVKKQS----------SK 54

Query: 69  SRRALILNKPKSAEGAVGSHKDDEVKVFGRSLNRPVVEQFARPRRQRIVDANPGKIEDGL 128
             R+L  N PK           + V V  R++NR  ++Q    RR      +   +ED  
Sbjct: 55  VSRSLTPNGPKKGRDG------ENVGVSARTVNRGGLKQVLH-RRSLSGAGSCVNVED-- 105

Query: 129 MDKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAK 188
            +  K   +EKL  +E+L+KDLQS++  LK E  K+QSLN EL+ QN  LV DL AAEAK
Sbjct: 106 CNGVKSGLQEKLCFAEDLIKDLQSQLVELKEELHKSQSLNFELQSQNDLLVRDLAAAEAK 165

Query: 189 IASLSSREQREAVGEYQSPKFKDVQKLIANKLEHSIVMTDAISETSINTPPSEPKIPIRN 248
            AS+S+ ++R++V E      +D QKL   KLE                  ++P    RN
Sbjct: 166 FASVSNNDKRKSVSEESQRSAEDNQKLENGKLE------------------TQPSSSCRN 207

Query: 249 AAGVERKPQAYPSMPAPLPPPPPP-RPPARAAATQKTPSFAQLYHSLTKQVEKKDLPSPV 307
              ++ K     + P P PPPP P +   RAAATQK+P   +L+HSL K+  K+D P   
Sbjct: 208 VRDLDCKTPPPRAPPPPPPPPPLPVQSMPRAAATQKSPDLVRLFHSLRKKEGKRDPPLL- 266

Query: 308 NQKRPAVSIAHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEF 367
              +PA   AH+SIVGEIQNRSAHLLAIKADIETKG FIN LI KVL AA+T+IED+L+F
Sbjct: 267 --GKPAAINAHNSIVGEIQNRSAHLLAIKADIETKGEFINGLIDKVLVAAHTDIEDILKF 324

Query: 368 VDWLDKELSSLADERAVLKHFKWPEKKADAMREAAVEYRDLKQLENEISSYRDDTNVPFG 427
           VDWLD +LSSLADERAVLKHFKWPEKKADAMREAA+EYR LK LENEIS Y+DDTN P  
Sbjct: 325 VDWLDSQLSSLADERAVLKHFKWPEKKADAMREAAIEYRALKLLENEISFYKDDTNSPCE 384

Query: 428 AALKKMASLLDKSERSIQRLVKLRNSVMHSYKDCKIPVDWMLDSGIISKIKQASMKLAQM 487
           AALKKMASLLDKSER IQRL+ LR++VMHSY++ K+P +WMLDSGI+SKIKQASM LA+M
Sbjct: 385 AALKKMASLLDKSERGIQRLITLRSTVMHSYQNLKLPTNWMLDSGIMSKIKQASMNLAKM 444

Query: 488 YMKRVTRELELVHNSDRESTQEALLLQGLHFAYRAHQFVGGLDSETLCAFEEIRQRVPQH 547
           YMKRV  EL+ V +SD+ES  E+LLLQG+HFAYR HQF GGLDSETLCAFEEI+Q VP+ 
Sbjct: 445 YMKRVKTELDSVRSSDKESNHESLLLQGIHFAYRTHQFAGGLDSETLCAFEEIKQWVPRR 504

Query: 548 L-GGSH--KLLAGISSS 561
           + G SH   L+ GI SS
Sbjct: 505 MVGRSHAQGLIVGIQSS 521

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	561
TAIR|locus:2007755	558	AT1G48280 "AT1G48280" [Arabido	0.491	0.494	0.663	8.2e-123
TAIR|locus:2102385	1004	CHUP1 "CHLOROPLAST UNUSUAL POS	0.481	0.268	0.501	5.9e-77
TAIR|locus:2831359	642	AT4G18570 [Arabidopsis thalian	0.461	0.403	0.488	5.4e-65
TAIR|locus:2007477	392	AT1G07120 "AT1G07120" [Arabido	0.454	0.650	0.438	2.3e-58

TAIR|locus:2007755 AT1G48280 "AT1G48280" [Arabidopsis thaliana (taxid:3702)]

 Score = 943 (337.0 bits), Expect = 8.2e-123, Sum P(2) = 8.2e-123
 Identities = 183/276 (66%), Positives = 224/276 (81%)

Query:   282 QKTPSFAQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADIET 341
             QK+P  +QL+  L KQ   ++L   VN  +  V+ AH+SIVGEIQNRSAHL+AIKADIET
Sbjct:   280 QKSPPVSQLFQLLNKQDNSRNLSQSVNGNKSQVNSAHNSIVGEIQNRSAHLIAIKADIET 339

Query:   342 KGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREA 401
             KG FIN LIQKVL   ++++ED+++FVDWLDKEL++LADERAVLKHFKWPEKKAD ++EA
Sbjct:   340 KGEFINDLIQKVLTTCFSDMEDVMKFVDWLDKELATLADERAVLKHFKWPEKKADTLQEA 399

Query:   402 AVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDKSERSIQRLVKLRNSVMHSYKDC 461
             AVEYR+LK+LE E+SSY DD N+ +G ALKKMA+LLDKSE+ I+RLV+LR S M SY+D 
Sbjct:   400 AVEYRELKKLEKELSSYSDDPNIHYGVALKKMANLLDKSEQRIRRLVRLRGSSMRSYQDF 459

Query:   462 KIPVDWMLDSGIISKIKQASMKLAQMYMKRVTRELELVHNSDRESTQEALLLQGLHFAYR 521
             KIPV+WMLDSG+I KIK+AS+KLA+ YM RV  EL+   N DREST+EALLLQG+ FAYR
Sbjct:   460 KIPVEWMLDSGMICKIKRASIKLAKTYMNRVANELQSARNLDRESTKEALLLQGVRFAYR 519

Query:   522 AHQFVGGLDSETLCAFEEIRQRVPQHLGGSHKLLAG 557
              HQF GGLD ETLCA EEI+QRVP HL  +   +AG
Sbjct:   520 THQFAGGLDPETLCALEEIKQRVPSHLRLARGNMAG 555

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2102385 CHUP1 "CHLOROPLAST UNUSUAL POSITIONING 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 704 (252.9 bits), Expect = 5.9e-77, Sum P(3) = 5.9e-77
 Identities = 136/271 (50%), Positives = 193/271 (71%)

Query:   283 KTPSFAQLYHSLTKQVEKKD-LPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADIET 341
             + P   + Y SL K+  KK+  PS ++      S A ++++GEI+NRS  LLA+KAD+ET
Sbjct:   720 RAPELVEFYQSLMKRESKKEGAPSLISSGTGNSSAARNNMIGEIENRSTFLLAVKADVET 779

Query:   342 KGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREA 401
             +G F+ SL  +V A+++T+IEDLL FV WLD+ELS L DERAVLKHF WPE KADA+REA
Sbjct:   780 QGDFVQSLATEVRASSFTDIEDLLAFVSWLDEELSFLVDERAVLKHFDWPEGKADALREA 839

Query:   402 AVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDKSERSIQRLVKLRNSVMHSYKDC 461
             A EY+DL +LE +++S+ DD N+    ALKKM  LL+K E+S+  L++ R+  +  YK+ 
Sbjct:   840 AFEYQDLMKLEKQVTSFVDDPNLSCEPALKKMYKLLEKVEQSVYALLRTRDMAISRYKEF 899

Query:   462 KIPVDWMLDSGIISKIKQASMKLAQMYMKRVTRELELVHNSDRESTQEALLLQGLHFAYR 521
              IPVDW+ D+G++ KIK +S++LA+ YMKRV  EL+ V  SD++  +E LLLQG+ FA+R
Sbjct:   900 GIPVDWLSDTGVVGKIKLSSVQLAKKYMKRVAYELDSVSGSDKDPNREFLLLQGVRFAFR 959

Query:   522 AHQFVGGLDSETLCAFEEIRQRVPQHLGGSH 552
              HQF GG D+E++ AFEE+R R     G ++
Sbjct:   960 VHQFAGGFDAESMKAFEELRSRAKTESGDNN 990

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0009707 "chloroplast outer membrane" evidence=IDA

GO:0009902 "chloroplast relocation" evidence=RCA;IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2831359 AT4G18570 [Arabidopsis thaliana (taxid:3702)]

 Score = 635 (228.6 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
 Identities = 131/268 (48%), Positives = 185/268 (69%)

Query:   282 QKTPSFAQLYHSLTKQVE---KKDLPSPVNQKRPAVSIAHSS---IVGEIQNRSAHLLAI 335
             ++ P   + YHSL ++     ++D     N    A+ +A+S+   ++GEI+NRS +LLAI
Sbjct:   354 RRVPEVVEFYHSLMRRDSTNSRRDSTGGGNAAAEAI-LANSNARDMIGEIENRSVYLLAI 412

Query:   336 KADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHFKWPEKKA 395
             K D+ET+G FI  LI++V  AA+++IED++ FV WLD ELS L DERAVLKHF+WPE+KA
Sbjct:   413 KTDVETQGDFIRFLIKEVGNAAFSDIEDVVPFVKWLDDELSYLVDERAVLKHFEWPEQKA 472

Query:   396 DAMREAAVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDKSERSIQRLVKLRNSVM 455
             DA+REAA  Y DLK+L +E S +R+D      +ALKKM +L +K E  +  L ++R S  
Sbjct:   473 DALREAAFCYFDLKKLISEASRFREDPRQSSSSALKKMQALFEKLEHGVYSLSRMRESAA 532

Query:   456 HSYKDCKIPVDWMLDSGIISKIKQASMKLAQMYMKRVTRELELVHNSDRESTQEALLLQG 515
               +K  +IPVDWML++GI S+IK AS+KLA  YMKRV+ ELE +     E  +E L++QG
Sbjct:   533 TKFKSFQIPVDWMLETGITSQIKLASVKLAMKYMKRVSAELEAIEGGGPE--EEELIVQG 590

Query:   516 LHFAYRAHQFVGGLDSETLCAFEEIRQR 543
             + FA+R HQF GG D+ET+ AFEE+R +
Sbjct:   591 VRFAFRVHQFAGGFDAETMKAFEELRDK 618

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2007477 AT1G07120 "AT1G07120" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
 Identities = 115/262 (43%), Positives = 171/262 (65%)

Query:   282 QKTPSFAQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADIET 341
             ++ P   + Y +LTK+  +  + + +NQ        + +++GEI+NRS +L  IK+D + 
Sbjct:   129 RRAPEVVEFYRALTKR--ESHMGNKINQNGVLSPAFNRNMIGEIENRSKYLSDIKSDTDR 186

Query:   342 KGGFINSLIQKVLAAAYTNIEDLLEFVDWLDKELSSLADERAVLKHF-KWPEKKADAMRE 400
                 I+ LI KV AA +T+I ++  FV W+D+ELSSL DERAVLKHF KWPE+K D++RE
Sbjct:   187 HRDHIHILISKVEAATFTDISEVETFVKWIDEELSSLVDERAVLKHFPKWPERKVDSLRE 246

Query:   401 AAVEYRDLKQLENEISSYRDDTNVPFGAALKKMASLLDKSERSIQRLVKLRNSVMHSYKD 460
             AA  Y+  K L NEI S++D+       AL+++ SL D+ E S+    K+R+S    YKD
Sbjct:   247 AACNYKRPKNLGNEILSFKDNPKDSLTQALQRIQSLQDRLEESVNNTEKMRDSTGKRYKD 306

Query:   461 CKIPVDWMLDSGIISKIKQASMKLAQMYMKRVTRELELVHNSDRESTQEALLLQGLHFAY 520
              +IP +WMLD+G+I ++K +S++LAQ YMKR+ +ELE  + S +E     L+LQG+ FAY
Sbjct:   307 FQIPWEWMLDTGLIGQLKYSSLRLAQEYMKRIAKELES-NGSGKEGN---LMLQGVRFAY 362

Query:   521 RAHQFVGGLDSETLCAFEEIRQ 542
               HQF GG D ETL  F E+++
Sbjct:   363 TIHQFAGGFDGETLSIFHELKK 384

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	561
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	0.004

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 14/49 (28%), Positives = 18/49 (36%)

Query: 238 PPSEPKIPIRNAAGVERKPQAYPSMPAPLPPPPPPRPPARAAATQKTPS 286
            P+E + P  + AG E  P      P   P PP P P     A     +
Sbjct: 209 EPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAA 257

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	561
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	99.61
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.46
PF05308	253	Mito_fiss_reg: Mitochondrial fission regulator; In	97.62
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	94.75
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	93.67
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	92.79
KOG2675	480	consensus Adenylate cyclase-associated protein (CA	92.48
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	91.89
COG4026	290	Uncharacterized protein containing TOPRIM domain,	91.33
PRK15319	2039	AIDA autotransporter-like protein ShdA; Provisiona	91.26
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	91.2
PF01213	312	CAP_N: Adenylate cyclase associated (CAP) N termin	89.8
KOG2675	480	consensus Adenylate cyclase-associated protein (CA	89.73
PF05308	253	Mito_fiss_reg: Mitochondrial fission regulator; In	89.72
PRK15422	79	septal ring assembly protein ZapB; Provisional	88.8
PF06637	442	PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th	88.67
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	88.43
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	87.63
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	86.97
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	86.27
KOG1925	817	consensus Rac1 GTPase effector FHOS [Signal transd	85.96
PRK09752	1250	adhesin; Provisional	85.92
PRK13169	110	DNA replication intiation control protein YabA; Re	85.4
KOG3997	281	consensus Major apurinic/apyrimidinic endonuclease	85.25
COG5178	2365	PRP8 U5 snRNP spliceosome subunit [RNA processing	85.21
PHA03211	461	serine/threonine kinase US3; Provisional	84.74
PRK10884	206	SH3 domain-containing protein; Provisional	84.28
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	82.14
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	81.66
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	81.12
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	81.1
PRK11637	428	AmiB activator; Provisional	81.07
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	80.75
PF01213	312	CAP_N: Adenylate cyclase associated (CAP) N termin	80.08
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	80.04

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=99.61  E-value=3.2e-16  Score=173.69  Aligned_cols=57  Identities=21%  Similarity=0.183  Sum_probs=45.6

Q ss_pred             ecCCCC-CccccCc-cccccccC------CCCccccccchHhHHHHHHHHhHhHHHHHHHHHHHHHH
Q 008574           99 SLNRPV-VEQFARP-RRQRIVDA------NPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFAL  157 (561)
Q Consensus        99 ~~~r~g-~~df~~r-~~~~~~~~------~~~~Ved~~~~Kkk~ELeeKLdlnEnlikELQsELeaL  157 (561)
                      -.||.| ||||.|| |++|++++      |++++++++  .++.+++.|++..+..+++.+.|+..+
T Consensus       436 vlHr~~~DPdf~yr~~l~id~~~liD~~vdkak~eese--qkA~e~~kk~~ke~ta~qe~qael~k~  500 (1102)
T KOG1924|consen  436 VLHRTGMDPDFKYRFRLDIDLTELIDKMVDKAKAEESE--QKAAELEKKFDKELTARQEAQAELQKH  500 (1102)
T ss_pred             HHhcCCCCCCcchhhcccCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            479999 9999999 68887776      888888888  788888888888887777776665433

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=98.46  E-value=8e-07  Score=100.46  Aligned_cols=31  Identities=29%  Similarity=0.485  Sum_probs=23.2

Q ss_pred             CCCCCCccccCCCCCCChhh-------hhhhhhhcccc
Q 008574          269 PPPPRPPARAAATQKTPSFA-------QLYHSLTKQVE  299 (561)
Q Consensus       269 PpPp~p~~g~~~~~rsP~~v-------eLy~sLk~K~e  299 (561)
                      |||||||.|+.|++..|+..       -|+++|++|+.
T Consensus       582 ppPPPpp~g~~Gg~ppPP~~gm~pmaPvlP~gLkpKK~  619 (1102)
T KOG1924|consen  582 PPPPPPPGGFLGGPPPPPPPGMFPMAPVLPFGLKPKKV  619 (1102)
T ss_pred             CCCcCCCCCCCCCCCCCCCCCcccccccCCCCCCcccc
Confidence            55556667777777777665       78999999985

>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function

Probab=97.62  E-value=0.00049  Score=70.33  Aligned_cols=18  Identities=28%  Similarity=0.409  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 008574          177 KLVEDLVAAEAKIASLSS  194 (561)
Q Consensus       177 eL~qQLsqAeaQIssL~s  194 (561)
                      .|+.||..+++||+.+.+
T Consensus       126 ALEdELs~LRaQIA~IV~  143 (253)
T PF05308_consen  126 ALEDELSRLRAQIAKIVA  143 (253)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            455566677777766665

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=94.75  E-value=0.33  Score=41.19  Aligned_cols=63  Identities=25%  Similarity=0.255  Sum_probs=55.0

Q ss_pred             hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574          132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS  194 (561)
Q Consensus       132 kk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s  194 (561)
                      .-..|+.|+...-..|.-|+.++..|+.+...+...+.+|..+|.+|+++.......|..|-+
T Consensus         5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~   67 (72)
T PF06005_consen    5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG   67 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999888887777765554

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.67  E-value=4.5  Score=43.63  Aligned_cols=19  Identities=32%  Similarity=0.128  Sum_probs=12.2

Q ss_pred             cCChhhHHHHHHHHhhhhc
Q 008574          204 YQSPKFKDVQKLIANKLEH  222 (561)
Q Consensus       204 ~qs~~~KkIQklia~kLE~  222 (561)
                      .+|.+.--||.+++---|+
T Consensus       120 pssdLv~Liq~l~a~f~~~  138 (365)
T KOG2391|consen  120 PSSDLVGLIQELIAAFSED  138 (365)
T ss_pred             ccchHHHHHHHHHHHhcCC
Confidence            3556667788888773333

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=92.79  E-value=1.9  Score=48.13  Aligned_cols=53  Identities=11%  Similarity=0.113  Sum_probs=35.8

Q ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574          137 EEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI  189 (561)
Q Consensus       137 eeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI  189 (561)
                      +.+|...+....+|+.+|+.++.|++.+.....+++.+.++|+.++..++.|+
T Consensus        68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql  120 (475)
T PRK13729         68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV  120 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            34455555556677778888877777777777777776666666666666665

>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]

Probab=92.48  E-value=0.12  Score=56.67  Aligned_cols=13  Identities=15%  Similarity=0.243  Sum_probs=8.3

Q ss_pred             Chhhhhhhhhhcc
Q 008574          285 PSFAQLYHSLTKQ  297 (561)
Q Consensus       285 P~~veLy~sLk~K  297 (561)
                      ..+..||..|..-
T Consensus       262 ~~~~AlFaqlNqG  274 (480)
T KOG2675|consen  262 GGRGALFAQLNQG  274 (480)
T ss_pred             ccHHHHHHHHhcc
Confidence            4567777777654

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=91.89  E-value=2  Score=35.60  Aligned_cols=60  Identities=22%  Similarity=0.268  Sum_probs=51.0

Q ss_pred             HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574          135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS  194 (561)
Q Consensus       135 ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s  194 (561)
                      +|+.-|+..-..++.++.||...+...-.+.....+.+..|..|.+++..++.++..+.+
T Consensus         1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~   60 (61)
T PF08826_consen    1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            578888888888888899998888888888888899999999999999999988877654

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=91.33  E-value=1.2  Score=45.76  Aligned_cols=75  Identities=24%  Similarity=0.264  Sum_probs=58.7

Q ss_pred             Cccccccc-hHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 008574          122 GKIEDGLM-DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE  196 (561)
Q Consensus       122 ~~Ved~~~-~Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~  196 (561)
                      +.|-+++| .....++.+||+.......+|..+++.+..|++.++.+...++.|+..|...+..+..++..|+.+-
T Consensus       125 ~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~  200 (290)
T COG4026         125 QRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRW  200 (290)
T ss_pred             hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence            45556666 3446778888888888888888888888888888888888888888888888888888887777543

>PRK15319 AIDA autotransporter-like protein ShdA; Provisional

Probab=91.26  E-value=0.21  Score=62.60  Aligned_cols=10  Identities=10%  Similarity=0.112  Sum_probs=5.3

Q ss_pred             HHHHHhhhhh
Q 008574          509 EALLLQGLHF  518 (561)
Q Consensus       509 ~~lL~qgvrF  518 (561)
                      ..|.||.|+|
T Consensus      1916 AQLiyq~V~~ 1925 (2039)
T PRK15319       1916 AQVVWQNYSA 1925 (2039)
T ss_pred             EEEEEEEecc
Confidence            3455655554

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=91.20  E-value=0.44  Score=53.20  Aligned_cols=6  Identities=33%  Similarity=0.329  Sum_probs=2.2

Q ss_pred             hhHHHH
Q 008574          330 AHLLAI  335 (561)
Q Consensus       330 a~l~aI  335 (561)
                      +-+.+|
T Consensus       497 ~LmaqI  502 (569)
T KOG3671|consen  497 ALMAQI  502 (569)
T ss_pred             HHHHHH
Confidence            333333

>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals

Probab=89.80  E-value=0.096  Score=55.30  Aligned_cols=13  Identities=15%  Similarity=0.445  Sum_probs=0.0

Q ss_pred             CChhhhhhhhhhc
Q 008574          284 TPSFAQLYHSLTK  296 (561)
Q Consensus       284 sP~~veLy~sLk~  296 (561)
                      ++.+..||--|.+
T Consensus       259 ~~~~~AlFaeLN~  271 (312)
T PF01213_consen  259 SGGMSALFAELNQ  271 (312)
T ss_dssp             -------------
T ss_pred             cccHHHHHHHHhc
Confidence            4566777777754

CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.

>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]

Probab=89.73  E-value=0.23  Score=54.51  Aligned_cols=16  Identities=31%  Similarity=0.329  Sum_probs=7.7

Q ss_pred             cCCCCCCChhhhhhhh
Q 008574          278 AAATQKTPSFAQLYHS  293 (561)
Q Consensus       278 ~~~~~rsP~~veLy~s  293 (561)
                      .....++.-+.+|-++
T Consensus       259 ~~k~~~~AlFaqlNqG  274 (480)
T KOG2675|consen  259 ANKGGRGALFAQLNQG  274 (480)
T ss_pred             cccccHHHHHHHHhcc
Confidence            3444455555555444

>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function

Probab=89.72  E-value=2.6  Score=43.57  Aligned_cols=40  Identities=8%  Similarity=0.068  Sum_probs=18.6

Q ss_pred             hhhhhhhhcccccCCCCCCCCCCCCccchhhhhhHHHHhc
Q 008574          288 AQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQN  327 (561)
Q Consensus       288 veLy~sLk~K~e~~~~~~~~~~~~~~~~~a~~~~i~Ei~n  327 (561)
                      .+|-.-.+++..+.+.....+..+......+.|+|.+|.+
T Consensus       210 ~~li~e~r~~~~~~~~t~~~~~~~~~~~PnMldVLKDmnk  249 (253)
T PF05308_consen  210 IDLIKERRKQKSGAGKTVSSSKSKSPDVPNMLDVLKDMNK  249 (253)
T ss_pred             HHHHHHHHhcccccccccccCCccccCCccHHHHHHhhhh
Confidence            3555555554444333322333322122346777777653

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=88.80  E-value=4.2  Score=35.44  Aligned_cols=61  Identities=21%  Similarity=0.214  Sum_probs=39.6

Q ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhh
Q 008574          133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE-------LEKQNKKLVEDLVAAEAKIASLS  193 (561)
Q Consensus       133 k~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeE-------LEkENqeL~qQLsqAeaQIssL~  193 (561)
                      -..|+.|+...-..|.=||.|++.++.+...+...++.       |+.||++|+++...=...+..|-
T Consensus         6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL   73 (79)
T PRK15422          6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL   73 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778888877777777777777777766666655444       66666666666555554444433

>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals

Probab=88.67  E-value=5.3  Score=43.71  Aligned_cols=6  Identities=0%  Similarity=0.113  Sum_probs=2.4

Q ss_pred             hhhhhh
Q 008574          288 AQLYHS  293 (561)
Q Consensus       288 veLy~s  293 (561)
                      -||-+.
T Consensus       419 eefkrr  424 (442)
T PF06637_consen  419 EEFKRR  424 (442)
T ss_pred             HHHHHH
Confidence            444333

PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=88.43  E-value=3.2  Score=46.45  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=14.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHH
Q 008574          471 SGIISKIKQASMKLAQMYMKRV  492 (561)
Q Consensus       471 ~gii~kiK~asv~la~~ymkrv  492 (561)
                      .|+.+=+=.+.=+||.=||||+
T Consensus       363 ~g~g~G~s~aa~~LadyYik~A  384 (475)
T PRK13729        363 MGIGGGASKAAQTLSDYYIKRA  384 (475)
T ss_pred             HhhhhhhhHHHHHHHHHHHHHH
Confidence            4444445566777888888876

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=87.63  E-value=3.5  Score=37.53  Aligned_cols=54  Identities=30%  Similarity=0.289  Sum_probs=43.5

Q ss_pred             HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574          134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEA  187 (561)
Q Consensus       134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAea  187 (561)
                      .+|=..+..-+..+..|-.++..|+..+..+...|..|.-||..|+..+.....
T Consensus         4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            467777777777778888888888888888888888888888888887776654

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=86.97  E-value=67  Score=37.28  Aligned_cols=98  Identities=17%  Similarity=0.284  Sum_probs=51.8

Q ss_pred             hhhhhhhhhhcccccCCCCCCCCCCCCccchhhhhhHHHHhcchhhHHHHHHHHhhhhhhHHHHHHHHHh--------cc
Q 008574          286 SFAQLYHSLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADIETKGGFINSLIQKVLA--------AA  357 (561)
Q Consensus       286 ~~veLy~sLk~K~e~~~~~~~~~~~~~~~~~a~~~~i~Ei~nRSa~l~aIk~DVe~~~~~I~~L~~~i~~--------~~  357 (561)
                      ++.+-|+.|+.+...+..             -....+.||++=-.=...|.++++..-..+..|..++..        +.
T Consensus       423 pL~~e~r~lk~~~~~~~~-------------e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Y  489 (594)
T PF05667_consen  423 PLIEEYRRLKEKASNRES-------------ESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAY  489 (594)
T ss_pred             HHHHHHHHHHHHHhhcch-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence            468899999986543221             122233333332223344555555555555555555543        33


Q ss_pred             ccCHHHHHHHHHhHHHHhhh-hhhhHHHHhhcCCchhhHH
Q 008574          358 YTNIEDLLEFVDWLDKELSS-LADERAVLKHFKWPEKKAD  396 (561)
Q Consensus       358 ~~di~~v~~fv~wld~~L~~-L~DEraVL~~F~wPe~K~d  396 (561)
                      +.-|-+|++.++-=+.++.. |.|=|.+-+--++=+.|++
T Consensus       490 t~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~  529 (594)
T PF05667_consen  490 TRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLD  529 (594)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566666666666666666 4444444444466666665

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=86.27  E-value=6.8  Score=37.32  Aligned_cols=62  Identities=27%  Similarity=0.358  Sum_probs=39.7

Q ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574          133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSL--NAELEKQNKKLVEDLVAAEAKIASLSS  194 (561)
Q Consensus       133 k~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~--NeELEkENqeL~qQLsqAeaQIssL~s  194 (561)
                      ..+|...+..-...+.+|+.++..+..|+..+...  +++|..+...|..++..+...+..|++
T Consensus        74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444445555555555556666666666665554  677777777777777777777777775

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]

Probab=85.96  E-value=0.76  Score=51.59  Aligned_cols=15  Identities=27%  Similarity=0.552  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHH
Q 008574          432 KMASLLDKSERSIQR  446 (561)
Q Consensus       432 km~~lldk~E~~~~~  446 (561)
                      +|..+||.+-+.|.-
T Consensus       584 r~~~fl~~cA~RI~~  598 (817)
T KOG1925|consen  584 RLTHFLDQCARRIAM  598 (817)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            455555555555433

>PRK09752 adhesin; Provisional

Probab=85.92  E-value=0.63  Score=56.58  Aligned_cols=11  Identities=18%  Similarity=0.274  Sum_probs=6.5

Q ss_pred             hhcccccCCCc
Q 008574          455 MHSYKDCKIPV  465 (561)
Q Consensus       455 ~~ryk~~~Ip~  465 (561)
                      ..+|+.+|+-.
T Consensus      1101 ~e~Y~S~G~TA 1111 (1250)
T PRK09752       1101 TDHYHSSGIIA 1111 (1250)
T ss_pred             ccceeeeeEEE
Confidence            34677766643

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=85.40  E-value=5.1  Score=36.76  Aligned_cols=52  Identities=31%  Similarity=0.218  Sum_probs=44.4

Q ss_pred             HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574          134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAA  185 (561)
Q Consensus       134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqA  185 (561)
                      .+|=.++..-+..+..+-.++..|+..+..+..+|..|+-||..|+..+...
T Consensus         4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5677788888888888889999999999999999999999999888887765

>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]

Probab=85.25  E-value=2.2  Score=43.78  Aligned_cols=90  Identities=18%  Similarity=0.218  Sum_probs=55.4

Q ss_pred             cccccCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCCccc------hhH-HHHHhhhhhhhh----
Q 008574          457 SYKDCKIPVDWMLDSGIISKIKQASMKLAQMYMKRVTRELELV----HNSDRES------TQE-ALLLQGLHFAYR----  521 (561)
Q Consensus       457 ryk~~~Ip~~wmlD~gii~kiK~asv~la~~ymkrv~~El~~~----~~~~~~~------~~~-~lL~qgvrFAfR----  521 (561)
                      |+...||-.+=|--..-+++=|+--++---.|+.++.+|.+..    .|+....      -++ +.+.-.+.--=|    
T Consensus        98 Rce~LGIgmYN~HPGSt~~~~kee~l~~ia~~in~a~eetk~V~ivlEnMAGqGn~vG~tfeelk~ii~~Ikdk~RigVC  177 (281)
T KOG3997|consen   98 RCEKLGIGMYNFHPGSTVGKEKEECLTTIAETINFAVEETKNVIIVLENMAGQGNSVGGTFEELKFIIGKIKDKSRIGVC  177 (281)
T ss_pred             HHHHhCceeeecCCCccccccHHHHHHHHHHHHHHHHHhccceEEEeecccCCCCcccccHHHHHHHHHhhcchhhheee
Confidence            3344444433222344566777777777778999999998764    3332221      122 233434433333    


Q ss_pred             ---hhccCCCCchHHhHHHHHHHHhccc
Q 008574          522 ---AHQFVGGLDSETLCAFEEIRQRVPQ  546 (561)
Q Consensus       522 ---vhqfAGG~D~~t~~afeElr~~~~~  546 (561)
                         -|+||+|+|=+|-++|+|+-.+...
T Consensus       178 lDTCH~FaaGyDI~Tee~y~evmkeFde  205 (281)
T KOG3997|consen  178 LDTCHTFAAGYDIRTEEAYEEVMKEFDE  205 (281)
T ss_pred             HhhhhhhccccccchHHHHHHHHHHHHH
Confidence               3999999999999999998765443

>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]

Probab=85.21  E-value=0.68  Score=56.06  Aligned_cols=17  Identities=18%  Similarity=0.255  Sum_probs=9.1

Q ss_pred             HHHhhhhhhhhhhccCC
Q 008574          511 LLLQGLHFAYRAHQFVG  527 (561)
Q Consensus       511 lL~qgvrFAfRvhqfAG  527 (561)
                      +||..+|.-==||-|.|
T Consensus       266 ~l~~~ird~ny~Ylf~~  282 (2365)
T COG5178         266 MLWESIRDVNYVYLFSG  282 (2365)
T ss_pred             ccHHHhccccEEEEecC
Confidence            45666665544555543

>PHA03211 serine/threonine kinase US3; Provisional

Probab=84.74  E-value=1  Score=49.45  Aligned_cols=18  Identities=11%  Similarity=0.134  Sum_probs=9.8

Q ss_pred             CchHHHHHHHHHHHHHHH
Q 008574          424 VPFGAALKKMASLLDKSE  441 (561)
Q Consensus       424 ~p~~~al~km~~lldk~E  441 (561)
                      ++....+.=+.+++.-|+
T Consensus       257 l~~~~~~~i~~qi~~aL~  274 (461)
T PHA03211        257 LGLAQVTAVARQLLSAID  274 (461)
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            455555555556665553

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.28  E-value=5.1  Score=40.19  Aligned_cols=43  Identities=19%  Similarity=0.326  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 008574          154 VFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE  196 (561)
Q Consensus       154 LeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s~~  196 (561)
                      ...+.+++....+...+|+.+|++|.+++..++.++..+++..
T Consensus       120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~  162 (206)
T PRK10884        120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL  162 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555556666677778888777777777777666543

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=82.14  E-value=4  Score=41.70  Aligned_cols=62  Identities=27%  Similarity=0.331  Sum_probs=27.2

Q ss_pred             hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574          132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS  193 (561)
Q Consensus       132 kk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~  193 (561)
                      .+..|.+++...+.....|+.+...+..+...|.......+.+...|.+++..+...+..|.
T Consensus        34 ~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~   95 (246)
T PF00769_consen   34 TAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLE   95 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555554455555555555544445555555555555555555444

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=81.66  E-value=5  Score=31.27  Aligned_cols=41  Identities=27%  Similarity=0.362  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574          149 DLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI  189 (561)
Q Consensus       149 ELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI  189 (561)
                      +|+.++..|+...+.|...++.|..|+..|+.++..+...+
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl   42 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL   42 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45666777777777777777777777777777777666544

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.12  E-value=11  Score=39.59  Aligned_cols=55  Identities=25%  Similarity=0.273  Sum_probs=27.6

Q ss_pred             HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574          139 KLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLS  193 (561)
Q Consensus       139 KLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~  193 (561)
                      +|....+..+.++.+|+.|...++.++...++++.++.++.+++..++.+|..++
T Consensus        39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~   93 (265)
T COG3883          39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELK   93 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444555555555555555555555555555555555555555444

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=81.10  E-value=8.5  Score=43.93  Aligned_cols=68  Identities=24%  Similarity=0.219  Sum_probs=39.6

Q ss_pred             ccCcccccccCccc--cccccccCCCCCcccccccccccCcccccc-----cc-cCccccccccchhhhhhhhcCC---C
Q 008574           10 TNNMSHSTAATTTF--RLRANSKTRESPKQEAGINGVSLSPELKAR-----AK-SVPADVKTNNISKSRRALILNK---P   78 (561)
Q Consensus        10 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~r-----a~-s~~~~~k~~~~~~~~r~~~~n~---~   78 (561)
                      -||+..|--|.+.-  ..........++..-+||-.|..++   +|     .= .+|.+..  +.+.....|..+.   |
T Consensus         9 F~nV~~~Y~P~~~v~C~Ytlt~~~~ps~~DWIGiFKVGw~s---~rdY~Tf~Wa~~p~~~~--~~s~~~~~V~F~ayyLP   83 (546)
T PF07888_consen    9 FNNVAKSYIPGTDVECHYTLTPGFHPSSKDWIGIFKVGWSS---TRDYYTFVWAPVPENYV--EGSAVNCQVQFQAYYLP   83 (546)
T ss_pred             EeccccccCCCCCeEEEEecCCCCCCCCCCeeEEeecCCCc---hhheeeEEeeccCcccc--CCCccceEEEECcccCC
Confidence            35666665555543  4444555567778888887776655   22     11 3344433  5555556777775   8


Q ss_pred             CCcC
Q 008574           79 KSAE   82 (561)
Q Consensus        79 k~~~   82 (561)
                      |.+.
T Consensus        84 k~~~   87 (546)
T PF07888_consen   84 KDDD   87 (546)
T ss_pred             CCCC
Confidence            8644

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK11637 AmiB activator; Provisional

Probab=81.07  E-value=18  Score=39.34  Aligned_cols=59  Identities=15%  Similarity=0.210  Sum_probs=27.8

Q ss_pred             HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574          131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI  189 (561)
Q Consensus       131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI  189 (561)
                      +...++++++....+.+.+++.++..+..++..+......++.+...+++++..++.++
T Consensus        47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei  105 (428)
T PRK11637         47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQI  105 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555665555555555555444444444444444444443333333333333333

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=80.75  E-value=10  Score=38.32  Aligned_cols=62  Identities=18%  Similarity=0.262  Sum_probs=39.9

Q ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574          133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS  194 (561)
Q Consensus       133 k~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s  194 (561)
                      ....+++.+.-....++|..++..+..|++.+...|..+++....+++++..++.++.++..
T Consensus        37 ~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~   98 (251)
T PF11932_consen   37 AQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE   98 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555566666677777777777777777777666666666666666655554

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals

Probab=80.08  E-value=0.68  Score=49.06  Aligned_cols=8  Identities=25%  Similarity=0.464  Sum_probs=0.0

Q ss_pred             HHHHHhhh
Q 008574          335 IKADIETK  342 (561)
Q Consensus       335 Ik~DVe~~  342 (561)
                      |-.|-++|
T Consensus       282 V~~~~~TH  289 (312)
T PF01213_consen  282 VTKDMMTH  289 (312)
T ss_dssp             --------
T ss_pred             cCcchhcc
Confidence            33444443

CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=80.04  E-value=9.3  Score=37.33  Aligned_cols=60  Identities=30%  Similarity=0.266  Sum_probs=45.3

Q ss_pred             HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574          135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS  194 (561)
Q Consensus       135 ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s  194 (561)
                      .+-+.+.........++.|...+..|+.+|+.++..|+.|+..|.+++...+..+..|-.
T Consensus        87 ~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~  146 (161)
T TIGR02894        87 SFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLID  146 (161)
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555544445567778888888888888889999999998888888888888766654

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	561
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 2e-09
 Identities = 71/560 (12%), Positives = 151/560 (26%), Gaps = 176/560 (31%)

Query: 88  HKDDEVKVFGRSLNRPVVEQFARPRRQRIV-DANPGKIEDGLMDK-KKKEFEEKLMLSEN 145
           H D E         + ++  F        V + +   ++D       K+E +  +M  + 
Sbjct: 6   HMDFETGEHQYQ-YKDILSVF----EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 146 ---------LVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSRE 196
                     +   Q E+     +FV+      E+ + N K +   +  E +  S+    
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQ---KFVE------EVLRINYKFLMSPIKTEQRQPSM---- 107

Query: 197 QREAVGEYQSPKFKDVQKLIANKLEHSIVMTDAISETSINTPPSEPKIPIRNAAGVERKP 256
                 E +   + D Q                      N    +P + +R A  +E +P
Sbjct: 108 MTRMYIEQRDRLYNDNQVF-----------------AKYNVSRLQPYLKLRQAL-LELRP 149

Query: 257 QAYPS---MP--------APLPPPPPPRPPARAAATQKTPSFAQLYHSLTKQVEKKDLPS 305
                   +           +           +   Q    F   + +L      + +  
Sbjct: 150 AKNVLIDGVLGSGKTWVALDV---------CLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 306 PVN----------QKRPAVSIAHSSIVGEIQNRSAHLLAIKA---------DIETKG--- 343
            +             R   S      +  IQ     LL  K          +++      
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 344 GF-IN----------SLIQKVLAAAYTNI-----------EDLLE-FVDWLDKELSSLAD 380
            F ++           +   + AA  T+I           +++    + +LD     L  
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 381 ER------------AVLKHFK-----WPEKKADAMREA------AVEYRDLKQLENEISS 417
           E               ++        W     D +          +E  + +++ + +S 
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 418 YRDDTNVPFGAALKKMASLL--DKSERSIQRLVKLRNSVMHSY----KDCK-----IPVD 466
           +    ++P       + SL+  D  +  +  +V      +H Y    K  K     IP  
Sbjct: 381 FPPSAHIP-----TILLSLIWFDVIKSDVMVVVNK----LHKYSLVEKQPKESTISIP-- 429

Query: 467 WMLDSGIISKIKQASMKLAQMYMKRVTRELELVHNSDRESTQEALLLQGL------HFAY 520
                 I  ++K        ++   V       +N  +    + L+   L      H  +
Sbjct: 430 -----SIYLELKVKLENEYALHRSIVDH-----YNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 521 RAHQFVGGLDSETLCAFEEI 540
             H        E +  F  +
Sbjct: 480 --H-LKNIEHPERMTLFRMV 496

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 72/458 (15%), Positives = 139/458 (30%), Gaps = 133/458 (29%)

Query: 46  LSPELKARAK-SVPADVKTNNISKSRRALILNKPKSAEGAVGSHKD-----DEVKVFGRS 99
           + P   +R+  S    ++ ++I    R L+ +KP         +++       V+     
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP---------YENCLLVLLNVQ----- 254

Query: 100 LNRPVVEQFARPRRQRIV----DANPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVF 155
            N      F      +I+          + D L              S  L  D    + 
Sbjct: 255 -NAKAWNAFNL--SCKILLTTRFKQ---VTDFLSAATTTHISLD-HHSMTLTPDEVKSLL 307

Query: 156 ALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSSREQREAVGEYQSPKFKDVQKL 215
               +  + Q L  E+   N      ++A             R+ +  +    +K V   
Sbjct: 308 LKYLD-CRPQDLPREVLTTNP-RRLSIIAES----------IRDGLATWD--NWKHVNC- 352

Query: 216 IANKLEHSIVMTDAISETSINT-PPSEPKIPIRNAAGVERKPQAYPSMPAPLPP--PPPP 272
             +KL   I       E+S+N   P+E +             + +  + +  PP    P 
Sbjct: 353 --DKLTTII-------ESSLNVLEPAEYR-------------KMFDRL-SVFPPSAHIPT 389

Query: 273 RPPAR---AAATQKTPSFAQLYH--SLTKQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQN 327
              +                  H  SL   VEK         K   +SI  S     I  
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSL---VEK-------QPKESTISI-PS-----IY- 432

Query: 328 RSAHLLAIKADIETKGGFINSLIQKVLAAAYTNIEDLLEFVDWLDK-------------E 374
                L +K  +E +     S++         + +DL+    +LD+             E
Sbjct: 433 -----LELKVKLENEYALHRSIVDHYNIPKTFDSDDLI--PPYLDQYFYSHIGHHLKNIE 485

Query: 375 LSSLADE-RAVLKHFKWPEKK----ADAMREAAVEYRDLKQLENEISSYRD---DTNVPF 426
                   R V   F++ E+K    + A   +      L+QL+     Y+    D +  +
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF----YKPYICDNDPKY 541

Query: 427 GAALKKMASLLDKSERSIQR-----LVKLRNSVMHSYK 459
              +  +   L K E ++       L+++  ++M   +
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRI--ALMAEDE 577

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 8e-06
 Identities = 44/322 (13%), Positives = 96/322 (29%), Gaps = 94/322 (29%)

Query: 296 KQVEKKDLPSPVNQKRPAVSIAHSSIVGEIQNRSAHLLAIKADIETKGG-----FINSLI 350
           K V+  D+P  +  K     I H  +  +  + +  L      + +K       F+  ++
Sbjct: 36  KDVQ--DMPKSILSKE---EIDHIIMSKDAVSGTLRLFWT---LLSKQEEMVQKFVEEVL 87

Query: 351 QK---VLAAAYTNIE-----DLLEFVDWLDKELSSLADERAVLKHFKWPEKKADAMREAA 402
           +     L +     +         +++  D+  +   D +   K+     +    +R+A 
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN---DNQVFAKYNVSRLQPYLKLRQAL 144

Query: 403 VEYRDL------------KQ-LENE-ISSYRDDTNVPFG-------------AALKKMAS 435
           +E R              K  +  +   SY+    + F                L+ +  
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 436 LL-----------DKSERSIQRLV----KLRNSVMH-SYKDCKIPVD--WMLDSGII--- 474
           LL           D S     R+     +LR  +    Y++C + +      ++      
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ--NAKAWNAF 262

Query: 475 ---SKI----KQASMKLAQMYMKRVTRELELVHNSDRESTQEALLLQGLHFAYRAHQFVG 527
               KI    +     +        T  + L H+S   +  E   L          +++ 
Sbjct: 263 NLSCKILLTTRFKQ--VTDFLSAATTTHISLDHHSMTLTPDEVKSL----LL----KYL- 311

Query: 528 GLDSETLCAFEEIRQRVPQHLG 549
               + L    E+    P+ L 
Sbjct: 312 DCRPQDLP--REVLTTNPRRLS 331

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	561
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	93.95
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	92.53
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	90.68
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	89.55
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	87.58
3bas_A	89	Myosin heavy chain, striated muscle/general contro	84.39
2q6q_A	74	Spindle POLE BODY component SPC42; SPC42P, budding	83.09
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	82.08
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	81.95
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	80.61
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	80.12
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	80.07

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=93.95  E-value=0.0061  Score=63.62  Aligned_cols=61  Identities=21%  Similarity=0.201  Sum_probs=26.0

Q ss_pred             eecCCCC-CccccCccccccccC------CCCccccccchHhHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 008574           98 RSLNRPV-VEQFARPRRQRIVDA------NPGKIEDGLMDKKKKEFEEKLMLSENLVKDLQSEVFALKAE  160 (561)
Q Consensus        98 ~~~~r~g-~~df~~r~~~~~~~~------~~~~Ved~~~~Kkk~ELeeKLdlnEnlikELQsELeaLkkE  160 (561)
                      ...||+| ||||..|++.+++.+      +..+|++.+  ++..+|.+|++.....+++++.++..+..+
T Consensus       302 ivl~~~~~Dpd~~~~~l~~~v~~l~d~l~~~~~~~~~~--~~~~e~~kklee~~~~r~e~~~~~~~~e~~  369 (386)
T 2bnx_A          302 IVLHKNGTDPDFKCRHLQIDIERLVDQMIDKTKVEKSE--AKATELEKKLDSELTARHELQVEMKKMEND  369 (386)
T ss_dssp             HHTCGGGCCCCTTCSCCCCCCTTTC-----CTHHHHHH--TTTCC-------------------------
T ss_pred             HHhccCCCCCCcccccccchHHHHHHHHhhhhHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            4578999 999998888888887      444455444  567888899999888888888777655544

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=92.53  E-value=0.91  Score=38.42  Aligned_cols=59  Identities=20%  Similarity=0.195  Sum_probs=39.2

Q ss_pred             hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Q 008574          132 KKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAE-------LEKQNKKLVEDLVAAEAKIA  190 (561)
Q Consensus       132 kk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeE-------LEkENqeL~qQLsqAeaQIs  190 (561)
                      .-..|+.|++..-..|.-||.|+..|+.+...+...+++       +..||..|+++...-...|.
T Consensus         7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~   72 (81)
T 2jee_A            7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ   72 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            446788888888877777788887777777777777666       44455555554444444443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=90.68  E-value=1.5  Score=40.02  Aligned_cols=60  Identities=18%  Similarity=0.207  Sum_probs=31.7

Q ss_pred             HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574          135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS  194 (561)
Q Consensus       135 ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s  194 (561)
                      ++++..+.-+..+.++..|+..++.++..++..++++++++.+|+.++..+..++..|++
T Consensus        72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~  131 (138)
T 3hnw_A           72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET  131 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444455555555555555555555555555555555555555555543

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=89.55  E-value=2.5  Score=38.64  Aligned_cols=53  Identities=17%  Similarity=0.206  Sum_probs=21.6

Q ss_pred             HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574          134 KEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAE  186 (561)
Q Consensus       134 ~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAe  186 (561)
                      .+|++.++.....+.+|+.++..++.+++.+...+.++.+++..|+.++..++
T Consensus        78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A           78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444443333

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=87.58  E-value=3.8  Score=34.67  Aligned_cols=62  Identities=19%  Similarity=0.199  Sum_probs=54.2

Q ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574          133 KKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS  194 (561)
Q Consensus       133 k~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s  194 (561)
                      ..+|+.-|+.+=..++-++.||...+..+-..+....+.+..|+.|..++..++.++..|+.
T Consensus        12 ~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~   73 (81)
T 1wt6_A           12 LRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA   73 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            46899999998888899999999999998888888889999999999999999988877653

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=84.39  E-value=8.5  Score=32.41  Aligned_cols=65  Identities=20%  Similarity=0.227  Sum_probs=46.7

Q ss_pred             hHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574          130 DKKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS  194 (561)
Q Consensus       130 ~Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s  194 (561)
                      ......+.+.+...+..+++|+.....+..|+..|..+..+.+.....|...-..++.++..+..
T Consensus        20 eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~   84 (89)
T 3bas_A           20 LKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKK   84 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677778778888888888888888888877777666666666666666666666666654

>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}

Probab=83.09  E-value=7.4  Score=32.06  Aligned_cols=59  Identities=25%  Similarity=0.304  Sum_probs=50.6

Q ss_pred             HhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008574          131 KKKKEFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKI  189 (561)
Q Consensus       131 Kkk~ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQI  189 (561)
                      +-+.||..+|....++|.+|..=+.+++..+.+....|..||.+++.++.-...++-..
T Consensus         3 kQNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~   61 (74)
T 2q6q_A            3 QQNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKL   61 (74)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Confidence            45689999999999999999999999999999999999999999887777666665444

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=82.08  E-value=5.8  Score=41.29  Aligned_cols=21  Identities=24%  Similarity=0.234  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 008574          149 DLQSEVFALKAEFVKAQSLNA  169 (561)
Q Consensus       149 ELQsELeaLkkElEkL~~~Ne  169 (561)
                      .||.+|...++.+.++..+..
T Consensus       401 ~~~~~~~~~~~~~~~~~~~~~  421 (471)
T 3mq9_A          401 LLQQELTEAQKGFQDVEAQAA  421 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhh
Confidence            455555555555555554433

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=81.95  E-value=11  Score=31.26  Aligned_cols=60  Identities=23%  Similarity=0.199  Sum_probs=49.7

Q ss_pred             HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008574          135 EFEEKLMLSENLVKDLQSEVFALKAEFVKAQSLNAELEKQNKKLVEDLVAAEAKIASLSS  194 (561)
Q Consensus       135 ELeeKLdlnEnlikELQsELeaLkkElEkL~~~NeELEkENqeL~qQLsqAeaQIssL~s  194 (561)
                      ++.+||+..+..-++|+..|..+...++..+..-..+..|.+.+.+.++....++++|..
T Consensus         4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq   63 (72)
T 3cve_A            4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRD   63 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            567788888888888888888888888888888888888888888888888888877774

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=80.12  E-value=3  Score=45.74  Aligned_cols=29  Identities=14%  Similarity=0.196  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 008574          168 NAELEKQNKKLVEDLVAAEAKIASLSSRE  196 (561)
Q Consensus       168 NeELEkENqeL~qQLsqAeaQIssL~s~~  196 (561)
                      .++|++..++|+.+|..-..+|..|++..
T Consensus       112 S~ELRRrIqyLKekVdnQlsnIrvLQsnL  140 (562)
T 3ghg_A          112 SEDLRSRIEVLKRKVIEKVQHIQLLQKNV  140 (562)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34788888888888766667777777643

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=80.07  E-value=11  Score=35.14  Aligned_cols=26  Identities=12%  Similarity=0.037  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 008574          168 NAELEKQNKKLVEDLVAAEAKIASLS  193 (561)
Q Consensus       168 NeELEkENqeL~qQLsqAeaQIssL~  193 (561)
                      ++.+..|..-|+-++..++..+..|+
T Consensus        98 ~e~l~DEl~aLqlq~n~lE~kl~kLq  123 (152)
T 3a7p_A           98 TERLNAALISGTIENNVLQQKLSDLK  123 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444443333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00