Citrus Sinensis ID: 008579

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-
MGTLQTWRKAYGALKDTTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREELLNFQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIEAERLPRPVQGEDKGYSRTRDLESEELLEQLPALQQLLHRLVGCQPEGAAVHNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALEIYKRAGQQAGSLSDFYDVCKGLELARNFQFPVLREPPQSFLTTMEEYIREAPRVVTVPSEPLLLTYRPEEGPSEDANVPNDEPEAPSSDIVPVTNIEDGPPTPPAPPQNNMDTGDLLGLSHAAPDASAIEESNALALAIVPSEPGATAPTFNSGAGLTKDFDPTGWELALVSTPSTNISSANERQLAGGLDSLTLNSLYDEAAYRAQQPAYGAAAPNPFDVQDIFAMSNGVAPPPSVQMAAMAQQQTNPFGPFQPTYQQPPQQQHLMMNPSNPFGDTGFGAFPVNPVTHPQANNPFGTPGLL
ccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccHHHHHHHHHccccccEEEEEEEcccHHHHcEEEEEcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccEEEEEEccccccccccccccccccccccccccEEEEEEcccccccHHHHHHccccccHHHHHccHHHHHHHHcccccccccccccccccccHcccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
MGTLQTWRKAYGALKDTTKVGlahvnsdyaDLDVAIVKAtnhvecppkeRHLRKILIAtssirpradVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREELLNFQLRGRILQlsnfkddsspiawdcsAWVRTYALFLEERLECFRILKYdieaerlprpvqgedkgysrtrdlESEELLEQLPALQQLLHRLvgcqpegaaVHNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALEIYKRAgqqagslsdfYDVCKGLElarnfqfpvlreppqsfLTTMEEYIreaprvvtvpsepllltyrpeegpsedanvpndepeapssdivpvtniedgpptppappqnnmdtgdllglshaapdasaiEESNALALaivpsepgataptfnsgagltkdfdptgwelalvstpstnissanerqlaggldsltlnslYDEAAYraqqpaygaaapnpfdvqdifamsngvapppsVQMAAMAQqqtnpfgpfqptyqqppqqqhlmmnpsnpfgdtgfgafpvnpvthpqannpfgtpgll
MGTLQTWRKAYGALKDTTKVGLAHVNSDYADLDVAIVKATnhvecppkerhLRKILiatssirpradVAYCIHALGrrlaktrnwtVALKTLIVIhrtlregdptFREELLNFQLRGRILQLsnfkddsspiaWDCSAWVRTYALFLEERLECFRILKydieaerlprpvqgedkgySRTRDLESEELLEQLPALQQLLHRLVGCQPEGAAVHNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALEIYKRAGQQAGSLSDFYDVCKGLELArnfqfpvlrepPQSFLTTMEEYIReaprvvtvpsepLLLTYRPEEGPSEDANVPNDEPEAPSSDIVPVTNIEDGPPTPPAPPQNNMDTGDLLGLSHAAPDASAIEESNALALAIVPSEPGATAPTFNSGAGLTKDFDPTGWELALVSTPSTNISSANERQLAGGLDSLTLNSLYDEAAYRAQQPAYGAAAPNPFDVQDIFAMSNGVAPPPSVQMAAMAQQQTNPFGPFQPTYQQPPQQQHLMMNPSNPFGDTGFGAFPVNPVTHPqannpfgtpgll
MGTLQTWRKAYGALKDTTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREELLNFQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIEAERLPRPVQGEDKGYSRTRDleseelleqlpalqqllHRLVGCQPEGAAVHNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALEIYKRAGQQAGSLSDFYDVCKGLELARNFQFPVLREPPQSFLTTMEEYIREAPRVVTVPSEPLLLTYRPEEGPSEDANVPNDEPEAPSSDIVPVTNIEDGpptppappQNNMDTGDLLGLSHAAPDASAIEESNALALAIVPSEPGATAPTFNSGAGLTKDFDPTGWELALVSTPSTNISSANERQLAGGLDSLTLNSLYDEAAYRAQQPAYGAAAPNPFDVQDIFAMSNGVAPPPSVQMAAMAQQQTNpfgpfqptyqqppqqqHLMMNPSNPFGDTGFGAFPVNPVTHPQANNPFGTPGLL
*****TWRKAYGALKDTTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREELLNFQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIEAE*************************EQLPALQQLLHRLVGCQPEGAAVHNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALEIYKRAGQQAGSLSDFYDVCKGLELARNFQFPVLREPPQSFLTTMEEYIREAPRVVTVPSEPLLL********************************************************************************************LTKDFDPTGWELALV*****************GLDSLTLNSLYDEAAYRAQQPAYGAAAPNPFDVQDIFA****************************************************************************
****QTW*KAYGALKDTTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREELLNFQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDI*********************LESEELLEQLPALQQLLHRLVGCQPEGAAVHNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALEIYKRAGQQAGSLSDFYDVCKGLELARNFQFPVLREPPQSFLT********************************************************************************************************************************************************************************************************************************************************************
MGTLQTWRKAYGALKDTTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREELLNFQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIEAERLPRPVQGEDKGYSRTRDLESEELLEQLPALQQLLHRLVGCQPEGAAVHNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALEIYKRAGQQAGSLSDFYDVCKGLELARNFQFPVLREPPQSFLTTMEEYIREAPRVVTVPSEPLLLTYRPEEGPSEDANVPNDEPEAPSSDIVPVTNIEDGPPTPPAPPQNNMDTGDLLGLSHAAPDASAIEESNALALAIVPSEPGATAPTFNSGAGLTKDFDPTGWELALVSTPSTNISSANERQLAGGLDSLTLNSLYDEAAYRAQQPAYGAAAPNPFDVQDIFAMSNGVAPPPSVQMAAMAQQQTNPFGPFQPTYQQPPQQQHLMMNPSNPFGDTGFGAFPVNPVTHPQANNPFGTPGLL
*****TWRKAYGALKDTTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREELLNFQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIEAER****************DLESEELLEQLPALQQLLHRLVGCQPEGAAVHNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALEIYKRAGQQAGSLSDFYDVCKGLELARNFQFPVLREPPQSFLTTMEEYIREAP*************************************************************GDLLGLSHAAPDASAIEESNALALAIVPSEP******************PTGWELALVSTPSTNISSANERQLAGGLDSLTLNSLYDEAAYRAQQPAYGAAAPNPFDVQDIFAMSNGVAPPPSVQMAAMAQQQTNPFGPFQPTYQQPPQQQHLMMNPSNPFGDTGFGAFPVNPVTHPQ***********
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MGTLQTWRKAYGALKDTTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREELLNFQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIEAERLPRPVQGEDKGYSRTRDLESEELLEQLPALQQLLHRLVGCQPEGAAVHNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALEIYKRAGQQAGSLSDFYDVCKGLELARNFQFPVLREPPQSFLTTMEEYIREAPRVVTVPSEPLLLTYRPEEGPSEDANVPNDEPEAPSSDIVPVTNIEDGPPTPPAPPQNNMDTGDLLGLSHAAPDASAIEESNALALAIVPSEPGATAPTFNSGAGLTKDFDPTGWELALVSTPSTNISSANERQLAGGLDSLTLNSLYDEAAYRAQQPAYGAAAPNPFDVQDIFAMSNGVAPPPSVQMAAMAQQQTNPFGPFQPTYQQPPQQQHLMMNPSNPFGDTGFGAFPVNPVTHPQANNPFGTPGLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query561 2.2.26 [Sep-21-2011]
Q8LBH2571 Putative clathrin assembl yes no 0.978 0.961 0.703 0.0
P94017 692 Putative clathrin assembl no no 0.964 0.781 0.693 0.0
Q8VYT2601 Putative clathrin assembl no no 0.975 0.910 0.552 1e-163
Q9LVD8591 Putative clathrin assembl no no 0.561 0.532 0.775 1e-147
Q9LHS0544 Putative clathrin assembl no no 0.893 0.920 0.484 1e-130
Q9SA65599 Putative clathrin assembl no no 0.857 0.803 0.334 4e-63
Q8S9J8635 Probable clathrin assembl no no 0.873 0.771 0.316 2e-59
Q8GX47611 Putative clathrin assembl no no 0.850 0.780 0.307 9e-57
Q9ZVN6653 Clathrin coat assembly pr no no 0.532 0.457 0.361 3e-52
Q8LF20653 Putative clathrin assembl no no 0.254 0.218 0.510 9e-35
>sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana GN=At2g01600 PE=2 SV=2 Back     alignment and function desciption
 Score =  788 bits (2034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/583 (70%), Positives = 457/583 (78%), Gaps = 34/583 (5%)

Query: 1   MGTLQTWRKAYGALKDTTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILIATS 60
           MGTLQ+WRKAYGALKD+TKVGL  VNS+YADLDVAIVKATNHVECPPK+RHLRKI  ATS
Sbjct: 1   MGTLQSWRKAYGALKDSTKVGLVRVNSEYADLDVAIVKATNHVECPPKDRHLRKIFAATS 60

Query: 61  SIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREELLNFQLRGRIL 120
             R RADVAYCIHAL RRL KTRNWTVALKTLIVIHR LREGDPTFREELLNF  RGRIL
Sbjct: 61  VTRARADVAYCIHALSRRLHKTRNWTVALKTLIVIHRLLREGDPTFREELLNFSQRGRIL 120

Query: 121 QLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIEAERLPRPVQGEDKGYSRT 180
           QLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFR+LKYD EAERLP+   G+DKGYSRT
Sbjct: 121 QLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRVLKYDTEAERLPKSNPGQDKGYSRT 180

Query: 181 RDLESEELLEQLPALQQLLHRLVGCQPEGAAVHNYVIQYALALVLKESFKIYCAINDGII 240
           RDL+ EELLEQLPALQQLL+RL+GC+PEGAA HN+VIQYALALVLKESFK+YCAINDGII
Sbjct: 181 RDLDGEELLEQLPALQQLLYRLIGCRPEGAANHNHVIQYALALVLKESFKVYCAINDGII 240

Query: 241 NLVDKFFEMPRHEAIKALEIYKRAGQQAGSLSDFYDVCKGLELARNFQFPVLREPPQSFL 300
           NL+DKFFEM +HEAI +LEIYKRAGQQA SLSDFY+ CKGLELARNFQFPVLREPPQSFL
Sbjct: 241 NLIDKFFEMAKHEAITSLEIYKRAGQQARSLSDFYEACKGLELARNFQFPVLREPPQSFL 300

Query: 301 TTMEEYIREAPRVVTVPSEPLLLTYRPEEG-PSEDANVPNDEPEA-PSSDIVPV--TNIE 356
           TTMEEYI+EAPRVV VP+EPLLLTYRP++G  +ED    ++E E  PS D+V V      
Sbjct: 301 TTMEEYIKEAPRVVDVPAEPLLLTYRPDDGLTTEDTEPSHEEREMLPSDDVVVVSEETEP 360

Query: 357 DGPPTPPAPPQNNMDTGDLLGLSHAAPDASAIEESNALALAIVPSEPGATAPTFNSGAGL 416
             PP P A  QN +DT DL GL+  APD S IE+ NALALAIV ++     P F    G 
Sbjct: 361 SPPPPPSANAQNFIDTDDLWGLNTGAPDTSVIEDQNALALAIVSTDADPPTPHF----GQ 416

Query: 417 TKDFDPTGWELALVSTPSTNISSANERQLAGGLDSLTLNSLYDEAAYRA-QQPAYGAAAP 475
             ++DPTGWELALV+ PS++IS++ ER+LAGGLD+LTL+SLYD+ AY A Q+P YGA AP
Sbjct: 417 PNNYDPTGWELALVTAPSSDISASTERKLAGGLDTLTLSSLYDDGAYIASQRPVYGAPAP 476

Query: 476 NPFDVQDIFAMSNGVAPPPSVQMAAMAQQQTNPFGPFQPTYQQPPQ-----QQHLMMNPS 530
           NPF   D FA SNG APPP  Q         NPFG +Q TYQ  PQ     Q +   N S
Sbjct: 477 NPFASHDPFASSNGTAPPPQQQAV------NNPFGAYQQTYQHQPQPTYQHQSNPPTNNS 530

Query: 531 NPFGDTGFGAFPVNPVTHP------------QANNPFGTPGLL 561
           NPFGD  FG FPVNPV+              Q NNPF + GL+
Sbjct: 531 NPFGD--FGEFPVNPVSQQPNTSGYGDFSVNQHNNPFRSTGLI 571

Arabidopsis thaliana (taxid: 3702)
>sp|P94017|CAP9_ARATH Putative clathrin assembly protein At1g14910 OS=Arabidopsis thaliana GN=At1g14910 PE=2 SV=2 Back     alignment and function description
>sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g25940 OS=Arabidopsis thaliana GN=At4g25940 PE=2 SV=1 Back     alignment and function description
>sp|Q9LVD8|CAP7_ARATH Putative clathrin assembly protein At5g57200 OS=Arabidopsis thaliana GN=At5g57200 PE=3 SV=1 Back     alignment and function description
>sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200 OS=Arabidopsis thaliana GN=At5g35200 PE=1 SV=1 Back     alignment and function description
>sp|Q9SA65|CAP4_ARATH Putative clathrin assembly protein At1g03050 OS=Arabidopsis thaliana GN=At1g03050 PE=2 SV=1 Back     alignment and function description
>sp|Q8S9J8|CAP1_ARATH Probable clathrin assembly protein At4g32285 OS=Arabidopsis thaliana GN=At4g32285 PE=1 SV=2 Back     alignment and function description
>sp|Q8GX47|CAP3_ARATH Putative clathrin assembly protein At4g02650 OS=Arabidopsis thaliana GN=At4g02650 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZVN6|AP180_ARATH Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana GN=AP180 PE=1 SV=1 Back     alignment and function description
>sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query561
224099513562 predicted protein [Populus trichocarpa] 0.998 0.996 0.834 0.0
255573732567 clathrin assembly protein, putative [Ric 0.998 0.987 0.850 0.0
356525062568 PREDICTED: putative clathrin assembly pr 0.996 0.984 0.807 0.0
356525064567 PREDICTED: putative clathrin assembly pr 0.994 0.984 0.803 0.0
359472842567 PREDICTED: putative clathrin assembly pr 0.994 0.984 0.810 0.0
356512292569 PREDICTED: putative clathrin assembly pr 0.996 0.982 0.809 0.0
356525066575 PREDICTED: putative clathrin assembly pr 0.996 0.972 0.793 0.0
356512294584 PREDICTED: putative clathrin assembly pr 0.996 0.957 0.786 0.0
449449048566 PREDICTED: putative clathrin assembly pr 0.991 0.982 0.798 0.0
224111482516 predicted protein [Populus trichocarpa] 0.893 0.970 0.835 0.0
>gi|224099513|ref|XP_002311513.1| predicted protein [Populus trichocarpa] gi|222851333|gb|EEE88880.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  963 bits (2490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/563 (83%), Positives = 505/563 (89%), Gaps = 3/563 (0%)

Query: 1   MGTLQTWRKAYGALKDTTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILIATS 60
           MGTLQTWRKAYGALKD+TKVGLAHVNSDYA+LDVAIVKATNHVECPPKERHLRKIL ATS
Sbjct: 1   MGTLQTWRKAYGALKDSTKVGLAHVNSDYAELDVAIVKATNHVECPPKERHLRKILAATS 60

Query: 61  SIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREELLNFQLRGRIL 120
           +IRPRADVAYCIHAL RRLAKT NWTVALK LIVIHR LREGDPTFREELLNF  RGRIL
Sbjct: 61  AIRPRADVAYCIHALSRRLAKTHNWTVALKILIVIHRLLREGDPTFREELLNFSQRGRIL 120

Query: 121 QLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIEAERLPRPVQGEDKGYSRT 180
           QLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIEAERLPRP QG+DKGYSRT
Sbjct: 121 QLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIEAERLPRPAQGQDKGYSRT 180

Query: 181 RDLESEELLEQLPALQQLLHRLVGCQPEGAAVHNYVIQYALALVLKESFKIYCAINDGII 240
           RDL+SE+LLEQLPALQQLL+RLVGC+PEGAAV NYVIQYALALVLKESFKIYCAINDGII
Sbjct: 181 RDLDSEDLLEQLPALQQLLYRLVGCRPEGAAVGNYVIQYALALVLKESFKIYCAINDGII 240

Query: 241 NLVDKFFEMPRHEAIKALEIYKRAGQQAGSLSDFYDVCKGLELARNFQFPVLREPPQSFL 300
           NLVDKFFEMPRHEAIKAL+IYKRAGQQAG+LSDFYD+CKGLELARNFQFPVLREPPQSFL
Sbjct: 241 NLVDKFFEMPRHEAIKALDIYKRAGQQAGNLSDFYDICKGLELARNFQFPVLREPPQSFL 300

Query: 301 TTMEEYIREAPRVVTVPSEPLL-LTYRPEEGPSEDANVPNDEPEAPSSDIVPVTNIEDGP 359
           TTMEEYIREAPRVV+VPSE LL LTYRPEEGPSEDA    DE E P SD V V+N+E  P
Sbjct: 301 TTMEEYIREAPRVVSVPSEALLQLTYRPEEGPSEDAKSSGDELEPPPSDDVAVSNVEIAP 360

Query: 360 PTPPAPPQNNMDTGDLLGLSHAAPDASAIEESNALALAIVPSEPGATAPTFNSGAGLTKD 419
           P P   PQN++DTGDLLGL +  P+AS IEESNALALAIVPSE    APTFNS AG  KD
Sbjct: 361 PVPTTAPQNSIDTGDLLGLDYGTPNASTIEESNALALAIVPSE-SDVAPTFNSVAGQAKD 419

Query: 420 FDPTGWELALVSTPSTNISSANERQLAGGLDSLTLNSLYDEAAYR-AQQPAYGAAAPNPF 478
           FDPTGWELALV+TPS+NIS+ NERQLAGGLDSLTLNSLYDE AYR A++P YGA APNPF
Sbjct: 420 FDPTGWELALVTTPSSNISATNERQLAGGLDSLTLNSLYDEGAYRAARRPVYGAPAPNPF 479

Query: 479 DVQDIFAMSNGVAPPPSVQMAAMAQQQTNPFGPFQPTYQQPPQQQHLMMNPSNPFGDTGF 538
           ++QD FA+SN +A PPSVQMAAM QQ  NPFGP+QPTY QP  QQ++MM+ +NPFGD GF
Sbjct: 480 EIQDPFALSNSIAAPPSVQMAAMTQQPHNPFGPYQPTYPQPQHQQNMMMSHANPFGDAGF 539

Query: 539 GAFPVNPVTHPQANNPFGTPGLL 561
           GAF  +P+ HPQ NNPFG+ GLL
Sbjct: 540 GAFHAHPMAHPQTNNPFGSTGLL 562

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255573732|ref|XP_002527787.1| clathrin assembly protein, putative [Ricinus communis] gi|223532822|gb|EEF34597.1| clathrin assembly protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356525062|ref|XP_003531146.1| PREDICTED: putative clathrin assembly protein At2g01600-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356525064|ref|XP_003531147.1| PREDICTED: putative clathrin assembly protein At2g01600-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|359472842|ref|XP_002284689.2| PREDICTED: putative clathrin assembly protein At2g01600-like isoform 1 [Vitis vinifera] gi|297737667|emb|CBI26868.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356512292|ref|XP_003524854.1| PREDICTED: putative clathrin assembly protein At2g01600-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356525066|ref|XP_003531148.1| PREDICTED: putative clathrin assembly protein At2g01600-like isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|356512294|ref|XP_003524855.1| PREDICTED: putative clathrin assembly protein At2g01600-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|449449048|ref|XP_004142277.1| PREDICTED: putative clathrin assembly protein At2g01600-like [Cucumis sativus] gi|449481254|ref|XP_004156128.1| PREDICTED: putative clathrin assembly protein At2g01600-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224111482|ref|XP_002315872.1| predicted protein [Populus trichocarpa] gi|222864912|gb|EEF02043.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query561
TAIR|locus:2006727 692 AT1G14910 [Arabidopsis thalian 0.967 0.784 0.650 2.9e-196
TAIR|locus:2049587571 AT2G01600 [Arabidopsis thalian 0.982 0.964 0.662 3.2e-191
TAIR|locus:2165615591 AT5G57200 [Arabidopsis thalian 0.962 0.913 0.530 1.3e-139
TAIR|locus:2120780601 AT4G25940 [Arabidopsis thalian 0.786 0.733 0.55 3.2e-120
TAIR|locus:2182432544 AT5G35200 [Arabidopsis thalian 0.812 0.838 0.438 1.3e-92
TAIR|locus:505006543635 AT4G32285 [Arabidopsis thalian 0.306 0.270 0.458 3e-58
TAIR|locus:2040115653 AT2G25430 [Arabidopsis thalian 0.254 0.218 0.510 8.9e-58
TAIR|locus:2132382611 AT4G02650 [Arabidopsis thalian 0.265 0.243 0.467 2e-50
TAIR|locus:2007524599 AT1G03050 [Arabidopsis thalian 0.604 0.565 0.348 2.9e-50
TAIR|locus:2205558653 AT1G05020 [Arabidopsis thalian 0.499 0.428 0.341 3.4e-39
TAIR|locus:2006727 AT1G14910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1832 (650.0 bits), Expect = 2.9e-196, Sum P(2) = 2.9e-196
 Identities = 366/563 (65%), Positives = 431/563 (76%)

Query:     1 MGTLQTWRKAYGALKDTTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILIATS 60
             MGTLQ+WR+AYGALKDTTKVGL  VNSDYA+LDVAIVKATNHVECPPK+RHLRKI +ATS
Sbjct:     1 MGTLQSWRRAYGALKDTTKVGLVRVNSDYAELDVAIVKATNHVECPPKDRHLRKIFLATS 60

Query:    61 SIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREELLNFQLRGRIL 120
             +IRPRADVAYCIHAL RRL KTRNWTVALK L+VIHR LR+GDPTFREELLNF  +GRI+
Sbjct:    61 AIRPRADVAYCIHALSRRLHKTRNWTVALKALLVIHRLLRDGDPTFREELLNFSQKGRIM 120

Query:   121 QLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIEAERLPRPVQGEDKGYSRT 180
             Q+SNFKDDSSP+AWDCS WVRTYALFLEERLECFR+LKYDIEAERLP+   G++KGYS+T
Sbjct:   121 QISNFKDDSSPVAWDCSGWVRTYALFLEERLECFRVLKYDIEAERLPKVSPGQEKGYSKT 180

Query:   181 RDXXXXXXXXXXXXXXXXXHRLVGCQPEGAAVHNYVIQYALALVLKESFKIYCAINDGII 240
             RD                 HRL+GC+PEGAA HN++IQYAL+LVLKESFK+YCAIN+GII
Sbjct:   181 RDLDGEKLLEQLPALQQLLHRLIGCKPEGAAKHNHIIQYALSLVLKESFKVYCAINEGII 240

Query:   241 NLVDKFFEMPRHEAIKALEIYKRAGQQAGSLSDFYDVCKGLELARNFQFPVLREPPQSFL 300
             NLV+KFFEMPRHEAIKALEIYKRAG QAG+LS FY+VCKGLELARNFQFPVLREPPQSFL
Sbjct:   241 NLVEKFFEMPRHEAIKALEIYKRAGLQAGNLSAFYEVCKGLELARNFQFPVLREPPQSFL 300

Query:   301 TTMEEYIREAPRVVTVPSEPLLLTYRPEEG-PSEDANVPNDEPE--APS-SDIVPV--TN 354
             TTMEEY+R+AP++V V S PLLLTY P++G  SED    ++E E  +PS S +VP   T 
Sbjct:   301 TTMEEYMRDAPQMVDVTSGPLLLTYTPDDGLTSEDVGPSHEEHETSSPSDSAVVPSEETQ 360

Query:   355 IEDGXXXXXXXXQNNMDTGDLLGLSHAAPDASAIEESNALALAIVPSEPGATAPTFNSGA 414
             +           QN +DT DLLGL    PD  AI + NALALA+V ++  ++  +F    
Sbjct:   361 LSSQSPPSVETPQNFIDTDDLLGLHDDTPDPLAILDQNALALALVSNDVDSSPFSF---- 416

Query:   415 GLTKDFDPTGWELALVSTPSTNISSANERQLAGGLDSLTLNSLYDEAAYRA-QQPAYGAA 473
             G  +D DP+GWELALV+TPS +IS+A ERQLAGGLD+LTLNSLYD+ A RA QQPAYG  
Sbjct:   417 GQARDLDPSGWELALVTTPSNDISAATERQLAGGLDTLTLNSLYDDGALRAAQQPAYGVP 476

Query:   474 APNPFDVQDIFAMSNGVAPPPSVQMAAMAQQQTNXXXXXXXXXXXXXXXXHLMMNPSNPF 533
             A NPF+VQD+FA S+ V+PP +V       + T                  +  +P+NPF
Sbjct:   477 ASNPFEVQDLFAFSDSVSPPSAVNNPFGLYEPT-------YHQQEQQPQLQVAPSPANPF 529

Query:   534 GDTGFGAFPVNPVTHPQANNPFG 556
             GD  FG FP+ PV+ PQ+   FG
Sbjct:   530 GD--FGEFPIVPVSEPQSTTSFG 550
GO:0005543 "phospholipid binding" evidence=IEA
GO:0005545 "1-phosphatidylinositol binding" evidence=IEA
GO:0030118 "clathrin coat" evidence=IEA
GO:0030276 "clathrin binding" evidence=IEA
GO:0048268 "clathrin coat assembly" evidence=IEA
TAIR|locus:2049587 AT2G01600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165615 AT5G57200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120780 AT4G25940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182432 AT5G35200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006543 AT4G32285 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040115 AT2G25430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132382 AT4G02650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007524 AT1G03050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205558 AT1G05020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LBH2CAP8_ARATHNo assigned EC number0.70320.97860.9614yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query561
pfam07651278 pfam07651, ANTH, ANTH domain 1e-118
cd03564117 cd03564, ANTH_AP180_CALM, ANTH domain family; comp 1e-48
smart00273127 smart00273, ENTH, Epsin N-terminal homology (ENTH) 2e-43
pfam01417124 pfam01417, ENTH, ENTH domain 1e-07
>gnl|CDD|219498 pfam07651, ANTH, ANTH domain Back     alignment and domain information 
 Score =  351 bits (903), Expect = e-118
 Identities = 128/282 (45%), Positives = 180/282 (63%), Gaps = 5/282 (1%)

Query: 29  YADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVA 88
            +DL+VA+VKAT+H E PPK++H+R+IL+ TSS    A VA    AL RRL  TRNW VA
Sbjct: 1   DSDLEVAVVKATSHDEVPPKKKHVREILVGTSS---PAKVAALFWALSRRLPLTRNWVVA 57

Query: 89  LKTLIVIHRTLREGDPTFREELLNFQLRG-RILQLSNFKDDSSPIAWDCSAWVRTYALFL 147
           LK LI++H+ LREG P+  +ELL  + R   +L++S+F DDS  + WD  A++R YA +L
Sbjct: 58  LKALILVHKLLREGHPSVLQELLRARRRISSLLRISSF-DDSMSLTWDYGAFIRAYAKYL 116

Query: 148 EERLECFRILKYDIEAERLPRPVQGEDKGYSRTRDLESEELLEQLPALQQLLHRLVGCQP 207
           +ERL+  R L  D   ER+           +    +  E+LL+ +P LQ+LL  L+ C+P
Sbjct: 117 DERLDFHRKLPRDPTFERVEYGSLRAVGDPNSRYTMSMEDLLDIIPKLQKLLDALLKCKP 176

Query: 208 EGAAVHNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALEIYKRAGQQ 267
            G A+ N  I  AL L++KESF +Y AIN+GIINL++KFFEM + +A  AL IYKR   Q
Sbjct: 177 TGNALTNECIIAALILLIKESFGLYGAINEGIINLLEKFFEMSKPDADAALGIYKRFVSQ 236

Query: 268 AGSLSDFYDVCKGLELARNFQFPVLREPPQSFLTTMEEYIRE 309
              L +FY+VCK L   R+ + P L   P + L  +EE++R+
Sbjct: 237 FERLKEFYEVCKNLGYFRSLEIPKLPHIPPNLLDALEEHLRD 278

AP180 is an endocytotic accessory proteins that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats. Length = 278
>gnl|CDD|239622 cd03564, ANTH_AP180_CALM, ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>gnl|CDD|214594 smart00273, ENTH, Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>gnl|CDD|216488 pfam01417, ENTH, ENTH domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 561
KOG0251491 consensus Clathrin assembly protein AP180 and rela 100.0
PF07651280 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an 100.0
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 100.0
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 99.97
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 99.95
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 99.36
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 99.19
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 99.07
KOG2056336 consensus Equilibrative nucleoside transporter pro 98.56
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 98.01
KOG2057499 consensus Predicted equilibrative nucleoside trans 97.57
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 95.63
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 95.62
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 95.43
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 95.35
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 95.29
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 95.13
cd03561133 VHS VHS domain family; The VHS domain is present i 94.82
KOG2199462 consensus Signal transducing adaptor protein STAM/ 82.77
KOG0414 1251 consensus Chromosome condensation complex Condensi 80.89
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-89  Score=739.97  Aligned_cols=452  Identities=44%  Similarity=0.689  Sum_probs=346.9

Q ss_pred             HHHhhhccccceeeeeecCCCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhhccCCChhHH
Q 008579            9 KAYGALKDTTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVA   88 (561)
Q Consensus         9 ka~GalKD~tsig~Akv~~~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL~kTrnWiVA   88 (561)
                      +|+|++||++|||+|+|++.++++++||+|||+|+++|||+|||++|+.+|+.++  +++.+|+++|++||++||||+||
T Consensus         1 ~~~gaiKD~~s~~~a~v~~~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~--~~i~~~v~aLs~Rl~~TrnW~VA   78 (491)
T KOG0251|consen    1 RAIGAIKDRTSIGKASVASAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSP--ASIPSCVHALSERLNKTRNWTVA   78 (491)
T ss_pred             CCccccchhhhhHHHHhhhhhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCc--ccHHHHHHHHHHHhCCCcceeeh
Confidence            4789999999999999998889999999999999999999999999999999875  89999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHhhcccccccccccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhccccccccCCCC
Q 008579           89 LKTLIVIHRTLREGDPTFREELLNFQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIEAERLPR  168 (561)
Q Consensus        89 lKtLIllHrLLreG~p~f~eell~y~~r~~iL~Ls~F~D~ss~~a~d~safVR~Ya~YLdeRL~~~r~~~~d~~~~r~~k  168 (561)
                      +||||||||||++|++.|.+++.++   .++|+|++|+|++++.+|||++|||+|++||+||++||+..++|++..+..+
T Consensus        79 lKsLIliH~ll~~G~~~f~~~l~~~---~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~~~~  155 (491)
T KOG0251|consen   79 LKALILIHRLLKEGDPSFEQELLSR---NLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVKRGK  155 (491)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHhc---ccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhccccccccCcc
Confidence            9999999999999999999887654   4789999999999999999999999999999999999999999998543211


Q ss_pred             CCCCCCCCCcccccCC-HHHHHHHHHHHHHHHHHHhcCccCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008579          169 PVQGEDKGYSRTRDLE-SEELLEQLPALQQLLHRLVGCQPEGAAVHNYVIQYALALVLKESFKIYCAINDGIINLVDKFF  247 (561)
Q Consensus       169 ~~~~~~~~~~~~~~l~-~e~LL~~L~~LQ~Ll~rlL~crp~g~a~~N~lvl~AL~lLVkDS~~LY~~inegiinLLd~fF  247 (561)
                             .....+++. .+.+|+++++||+||+++|+|+|.+.+.+|+||++||.|||+|||+||++||+|||||||+||
T Consensus       156 -------~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekff  228 (491)
T KOG0251|consen  156 -------EKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDGIINLLEKFF  228 (491)
T ss_pred             -------cccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                   122344555 789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHHHHhHHHHHHHHHHhhcccccccccCCCCCCCCchhHHHHHHHHHhCCCCCCCCCCcccccCCC
Q 008579          248 EMPRHEAIKALEIYKRAGQQAGSLSDFYDVCKGLELARNFQFPVLREPPQSFLTTMEEYIREAPRVVTVPSEPLLLTYRP  327 (561)
Q Consensus       248 eM~~~da~kaLeiykRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~sfL~~LEEylrdap~~~~~~~~~~~~~~~~  327 (561)
                      ||+++||+++|+|||||.+|+|+|.+||++||++|+.|.++||+|+++|.++|++|||||++.+..+.............
T Consensus       229 em~~~~a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~~~~~~~~~~~~~~~  308 (491)
T KOG0251|consen  229 EMSKHDAIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGGKAKTAKVSPVSQFS  308 (491)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhcccccccccccCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999764332211100000000


Q ss_pred             CCCCCCCC--CCCC-CCCCCCCCCCC-CCCCCCCCCC----CCCCCCCCCCCCCcccCCCCCCCCchhhhhhccceeccc
Q 008579          328 EEGPSEDA--NVPN-DEPEAPSSDIV-PVTNIEDGPP----TPPAPPQNNMDTGDLLGLSHAAPDASAIEESNALALAIV  399 (561)
Q Consensus       328 ~~~~~~~~--~~~~-~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~dll~l~~~~~~~~~~~~~~~lala~~  399 (561)
                      ......+.  .... .+.++...+.+ ++...+..|.    .+...++..+.++|++.+.+..+..++.+..|+||||+ 
T Consensus       309 ~~~~~~e~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-  387 (491)
T KOG0251|consen  309 TDFESSESSSRLEEPEEQKEVIEELQEPLEQEEDQPSPNSENPEANDQAGIATDDLLLQPDNLPMFSASTAPNALALAL-  387 (491)
T ss_pred             cchhccccccccccchhhhhccccccccccccccCCCCCCCCccccccccccCcchhhcccCCCccccccCcchhhcCC-
Confidence            00000010  0000 00000000000 0111111110    01111111223346666666677899999999999999 


Q ss_pred             cCCCCCCCCCCCCCCCccCCCCCCccceeeccCCCCCCcchhhhhhcCCcchhhhhhccHHHHHHhc--C--CCCCCC--
Q 008579          400 PSEPGATAPTFNSGAGLTKDFDPTGWELALVSTPSTNISSANERQLAGGLDSLTLNSLYDEAAYRAQ--Q--PAYGAA--  473 (561)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~welalv~~~s~~~~~~~~~~l~gg~d~l~l~~~y~~~~~~~~--~--~~~g~~--  473 (561)
                      .+ +     ++          ..+|||+++|+..++.-...+..++||||   +||||| ++.+|+.  .  +++|++  
T Consensus       388 ~~-~-----~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~  447 (491)
T KOG0251|consen  388 PF-P-----NH----------TGSGWGLPAATPDSAAWETATMQALAGGL---TLNSMV-NNPFRATVQTAPQGQGSQPF  447 (491)
T ss_pred             CC-C-----CC----------CCCccccccCCcchhhhhhcccccccccc---eecccc-CCchhhhccccccccCCCcc
Confidence            21 1     11          34566666666554432111112899999   999999 7777765  2  234532  


Q ss_pred             C--C---CCC-CccCccccccCCCCC
Q 008579          474 A--P---NPF-DVQDIFAMSNGVAPP  493 (561)
Q Consensus       474 ~--~---~~~-~~~dpfaaS~~v~pp  493 (561)
                      .  +   +++ .+.+||+.|..+++|
T Consensus       448 ~~~p~~~~~~~~~~~~~~~~~~~a~~  473 (491)
T KOG0251|consen  448 GAQPMPAMAALPQPYPVGQPPFPAQL  473 (491)
T ss_pred             ccCCchhhhcccccCCCCCCCCcCcc
Confidence            1  1   222 245999999999987

>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query561
3zyk_A296 Structure Of Calm (Picalm) Anth Domain Length = 296 2e-22
1hf8_A289 Calm-N N-Terminal Domain Of Clathrin Assembly Lymph 3e-22
3zym_A310 Structure Of Calm (Picalm) In Complex With Vamp8 Le 6e-20
3zyl_A271 Structure Of A Truncated Calm (Picalm) Anth Domain 1e-19
1hx8_A299 Crystal Structure Of N-Terminal Domain Of Drosophil 2e-17
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain Length = 296 Back     alignment and structure 
Iteration: 1

 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 131/272 (48%), Gaps = 15/272 (5%)
Query: 36  IVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRLAKTRNWTVALKTLIVI 95
           + KAT H    PK++HL  ++  T+ +    ++     +L  R   + +W V  K+LI  
Sbjct: 33  VCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTTNS-SWVVVFKSLITT 89
Query: 96  HRTLREGDPTFREELLNFQLRGRILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFR 155
           H  +  G+  F + L +   R  +  LSNF D S    +D S ++R Y+ +L E+   +R
Sbjct: 90  HHLMVYGNERFIQYLAS---RNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYR 146
Query: 156 ILKYDIEAERLPRPVQGEDKGYSRTRDXXXXXXXXXXXXXXXXXHRLVGCQPEGAAVHNY 215
            + +D       +  +G D G  RT +                   L+        + N 
Sbjct: 147 QVAFD-----FTKVKRGAD-GVMRTMNTEKLLKTVPIIQNQMDA--LLDFNVNSNELTNG 198
Query: 216 VIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKALEIYKRAGQQAGSLSDFY 275
           VI  A  L+ K++ +++ A N+GIINL++K+F+M +++  + L+IYK+   +   +S+F 
Sbjct: 199 VINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFL 258
Query: 276 DVCKGLELARNFQFPVLREPPQSFLTTMEEYI 307
            V + + + R    P L + P S L  +E+++
Sbjct: 259 KVAEQVGIDRG-DIPDLSQAPSSLLDALEQHL 289
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid Myeloid Leukaemia Protein Length = 289 Back     alignment and structure
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8 Length = 310 Back     alignment and structure
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain Length = 271 Back     alignment and structure
>pdb|1HX8|A Chain A, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180 Length = 299 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query561
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 4e-96
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 8e-95
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 5e-91
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 2e-10
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 3e-09
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-04
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Length = 271 Back     alignment and structure
 Score =  292 bits (749), Expect = 4e-96
 Identities = 70/285 (24%), Positives = 134/285 (47%), Gaps = 16/285 (5%)

Query: 2   GTLQTWRKAYGALKDTTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILIATSS 61
           G+      +  +L D        V    + +   + KAT H    PK++HL  ++  T+ 
Sbjct: 1   GSPIGIHMSGQSLTDRITAAQHSVT--GSAVSKTVCKATTHEIMGPKKKHLDYLIQCTNE 58

Query: 62  IRPRADVAYCIHALGRRLAKTRNWTVALKTLIVIHRTLREGDPTFREELLNFQLRGRILQ 121
                ++     +L  R   + +W V  K+LI  H  +  G+  F + L +   R  +  
Sbjct: 59  --MNVNIPQLADSLFERTTNS-SWVVVFKSLITTHHLMVYGNERFIQYLAS---RNTLFN 112

Query: 122 LSNFKDDSSPIAWDCSAWVRTYALFLEERLECFRILKYDIEAERLPRPVQGEDKGYSRTR 181
           LSNF D S    +D S ++R Y+ +L E+   +R + +D            +       R
Sbjct: 113 LSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTKV--------KRGADGVMR 164

Query: 182 DLESEELLEQLPALQQLLHRLVGCQPEGAAVHNYVIQYALALVLKESFKIYCAINDGIIN 241
            + +E+LL+ +P +Q  +  L+        + N VI  A  L+ K++ +++ A N+GIIN
Sbjct: 165 TMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIIN 224

Query: 242 LVDKFFEMPRHEAIKALEIYKRAGQQAGSLSDFYDVCKGLELARN 286
           L++K+F+M +++  + L+IYK+   +   +S+F  V + + + R 
Sbjct: 225 LLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRG 269
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Length = 299 Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Length = 310 Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Length = 148 Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Length = 150 Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Length = 144 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query561
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 100.0
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 100.0
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 100.0
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 99.48
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 99.47
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 99.24
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 99.24
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 98.3
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 95.96
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 95.72
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 95.54
3g2s_A149 C-terminal fragment of sortilin-related receptor; 95.42
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 95.38
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 95.3
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 95.25
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 94.78
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 94.5
3iot_A449 Maltose-binding protein, huntingtin fusion protei; 81.57
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Back     alignment and structure
Probab=100.00  E-value=1e-73  Score=587.92  Aligned_cols=284  Identities=26%  Similarity=0.472  Sum_probs=244.3

Q ss_pred             CcchHHHHHHHhhhc-cccceeeeeecCCCchHHHHHHHhcCCCCCCCCHhhHHHHHHHHcCCCCCccHHHHHHHHHHhh
Q 008579            1 MGTLQTWRKAYGALK-DTTKVGLAHVNSDYADLDVAIVKATNHVECPPKERHLRKILIATSSIRPRADVAYCIHALGRRL   79 (561)
Q Consensus         1 m~~~~~~rka~GalK-D~tsig~Akv~~~~~dL~vAIvKATsh~e~PPKeKHVr~Il~~Ts~~rp~a~v~~~v~aLsrRL   79 (561)
                      |+ .++||+++|++| |+|+          .++++||+|||+|+++|||+||||+||.+|+.++  +++++|+++|.+| 
T Consensus         3 ~~-~~~~~~~~~a~k~~~~~----------~~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~--~~~~~~~~~L~~R-   68 (299)
T 1hx8_A            3 MA-GQTINDRLLAARHSLAG----------QGLAKSVCKATTEECIGPKKKHLDYLVHCANEPN--VSIPHLANLLIER-   68 (299)
T ss_dssp             ------------------------------CHHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHH-
T ss_pred             Cc-hHHHHHHHHHHhhccch----------hHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCC--CCHHHHHHHHHhh-
Confidence            54 369999999999 9988          4688899999999999999999999999999865  6889999999999 


Q ss_pred             ccCCChhHHHHHHHHHHHHHhcCCcchHHHHHHHhhcccccccccccCCCC-----------CCCCcccHHHHHHHHHHH
Q 008579           80 AKTRNWTVALKTLIVIHRTLREGDPTFREELLNFQLRGRILQLSNFKDDSS-----------PIAWDCSAWVRTYALFLE  148 (561)
Q Consensus        80 ~kTrnWiVAlKtLIllHrLLreG~p~f~eell~y~~r~~iL~Ls~F~D~ss-----------~~a~d~safVR~Ya~YLd  148 (561)
                      .+++||+|+||||||||||||||||.|.+++.   ++.++|+|++|+|+++           +.+||||.|||+|++||+
T Consensus        69 ~~~~~w~va~K~LivlH~llreG~~~~~~~l~---~~~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~  145 (299)
T 1hx8_A           69 SQNANWVVVYKSLITTHHLMAYGNERFMQYLA---SSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLN  145 (299)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHH---HTTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHhcCCHHHHHHHH---hCCcccchhhhhcccccccccccccccccccchhHHHHHHHHHHH
Confidence            58999999999999999999999999988763   2567999999999865           457899999999999999


Q ss_pred             HHHHHhhhccccccccCCCCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHhcCccCCCccccchHHHHHHHHHHHH
Q 008579          149 ERLECFRILKYDIEAERLPRPVQGEDKGYSRTRDLESEELLEQLPALQQLLHRLVGCQPEGAAVHNYVIQYALALVLKES  228 (561)
Q Consensus       149 eRL~~~r~~~~d~~~~r~~k~~~~~~~~~~~~~~l~~e~LL~~L~~LQ~Ll~rlL~crp~g~a~~N~lvl~AL~lLVkDS  228 (561)
                      +|+.+|+..++|++...     .+.+  ..++++|+++.||++++.||+||+++++|++.+.+.+|+|+++||++||+||
T Consensus       146 ~r~~~f~~~~~d~~~~~-----~~~~--~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al~llv~Ds  218 (299)
T 1hx8_A          146 EKSLSYRAMAFDFCKVK-----RGKE--EGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDL  218 (299)
T ss_dssp             HHHHHHHHHSSCGGGC------------CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCccccc-----cCcc--ccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHHHHHHHHH
Confidence            99988999999886321     1222  3468889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhHHHHHHHHHHhhcccccccccCCCCCCCCchhHHHHHHHHH
Q 008579          229 FKIYCAINDGIINLVDKFFEMPRHEAIKALEIYKRAGQQAGSLSDFYDVCKGLELARNFQFPVLREPPQSFLTTMEEYIR  308 (561)
Q Consensus       229 ~~LY~~inegiinLLd~fFeM~~~da~kaLeiykRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~sfL~~LEEylr  308 (561)
                      ++||+++|+||+||||+||+|++.||++||+||+||.+|+++|++||++||++++.+ ++||+|+++|++||++|||||+
T Consensus       219 ~~lY~~i~~gi~~lLe~~fem~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~-~~iP~L~~~p~~ll~~Lee~l~  297 (299)
T 1hx8_A          219 IRLFACYNDGIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLA  297 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCC-CCCCCCCCCCHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999977 8999999999999999999999


Q ss_pred             h
Q 008579          309 E  309 (561)
Q Consensus       309 d  309 (561)
                      +
T Consensus       298 ~  298 (299)
T 1hx8_A          298 T  298 (299)
T ss_dssp             T
T ss_pred             h
Confidence            6
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 561
d1hx8a1133 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosop 2e-59
d1hf8a1132 a.7.8.2 (A:150-281) Clathrin assembly lymphoid mye 7e-59
d1hx8a2140 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Droso 5e-48
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 2e-45
d1eyha_144 a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [T 4e-28
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 133 Back     information, alignment and structure

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  191 bits (487), Expect = 2e-59
 Identities = 37/131 (28%), Positives = 71/131 (54%), Gaps = 1/131 (0%)

Query: 178 SRTRDLESEELLEQLPALQQLLHRLVGCQPEGAAVHNYVIQYALALVLKESFKIYCAIND 237
              R + +E+LL+ LP LQ  L  L+    +   + N VI  +  L+ ++  +++   ND
Sbjct: 2   GSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYND 61

Query: 238 GIINLVDKFFEMPRHEAIKALEIYKRAGQQAGSLSDFYDVCKGLELARNFQFPVLREPPQ 297
           GIINL++K+F+M +  A  AL++YK+   +   + +F  V + + + +    P L + P 
Sbjct: 62  GIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDKG-DIPDLTKAPS 120

Query: 298 SFLTTMEEYIR 308
           S L  +E+++ 
Sbjct: 121 SLLDALEQHLA 131
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140 Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 144 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query561
d1hx8a1133 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 100.0
d1hf8a1132 Clathrin assembly lymphoid myeloid leukaemia prote 100.0
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 99.97
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 99.97
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 99.83
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 95.5
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 95.43
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 95.29
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 94.54
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 94.05
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=6.4e-40  Score=297.62  Aligned_cols=130  Identities=28%  Similarity=0.553  Sum_probs=127.5

Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHhcCccCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHH
Q 008579          179 RTRDLESEELLEQLPALQQLLHRLVGCQPEGAAVHNYVIQYALALVLKESFKIYCAINDGIINLVDKFFEMPRHEAIKAL  258 (561)
Q Consensus       179 ~~~~l~~e~LL~~L~~LQ~Ll~rlL~crp~g~a~~N~lvl~AL~lLVkDS~~LY~~inegiinLLd~fFeM~~~da~kaL  258 (561)
                      ++|+|++++||+++++||+||+|+++|+|.|.+.+|+||++||++||+|||+||+.+|+|||||||+||||+++||++||
T Consensus         3 ~lr~m~~~~LL~~l~~lQ~lld~Ll~c~p~~~~~~n~vi~~A~~llvkds~~lY~~inegiinLLd~fFem~k~da~~al   82 (133)
T d1hx8a1           3 SLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDAL   82 (133)
T ss_dssp             CTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHhhcccccccccCCCCCCCCchhHHHHHHHHHh
Q 008579          259 EIYKRAGQQAGSLSDFYDVCKGLELARNFQFPVLREPPQSFLTTMEEYIRE  309 (561)
Q Consensus       259 eiykRf~kQ~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~sfL~~LEEylrd  309 (561)
                      +||+||++|+++|.+||+|||++|+.| .+||+|+++|++++++|||||++
T Consensus        83 ~iyk~~~~q~e~L~~f~~~ck~~g~~r-~e~P~l~~~p~sll~~LEe~l~~  132 (133)
T d1hx8a1          83 DLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLAT  132 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCccc-cCCCCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999999999988 69999999999999999999986
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure