Citrus Sinensis ID: 008613

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------56
Protein Sequence
MMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAGQASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQQMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFIGG
Secondary Structure (PSIPRED)
cccccHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHccccHccccHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccHHccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MMANPELMRIATEnmknmrpedlKCAAEqlthtppeeVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNlqgihsseGRTLLLACSLNsmscylktkqYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDlsnahevspddgtIADVLRDAKEILMkedghhgprgllIEEITEEvgavssgshrssgteylarekadpsksehsangrgsstkpeflpdlkddpesIRSFQNFisnanpdsfaalsggkageispDMFKAVSIMINKMSPEELQRMIQIASsfqgenphangdsietnfngfrpgstppnmrpdmlKTASDVMSKMSSEDLQKMFEMESTLKNKvagqastavdpkgissdpgprlsesrersavngnnvvgqpssggffpnsrtnqqssfspstADLQQMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGvqgvkktknwllgkpGMILAICMLILAVILHRLGFIGG
Flexible Loop (DISEMBL)
MMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSdlsnahevspddgtIADVLRDAKEILMkedghhgprgLLIEEITEEVgavssgshrssgTEYLarekadpsksehsangrgsstkpeflpDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVagqastavdpkgissdpgprlSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQQMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQrgvqgvkktknwllgKPGMILAICMLILAVILHRLGFIGG
Low Complexity Region (SEG)
MMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAGQASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQQMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFIGG
Disordered region (IsUnstruct)
*************************************************************AQMNYEFNAAKMLK**GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE********************DVLR****I************LLI*******************************************************************************************AVSIM********************************************************************************************************************************************************************************************************NDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFI**
Disordered Region (DISOPRED)
*****EL****TE**KNMRPEDL*C**************EI******************************KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR***************************************************************************************************************************************************************************************************************************************************************************************************************************LNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFIGG
Disordered Region (DISEMBL)
MMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEV*************************************KPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNK******************************VNGNNVVGQPSSGGFFPNSR*************LQQMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFIGG
Disordered Region (DISPRO)
***NPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITE******************************************FLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLK*********************************************************************************************************************SSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFIGG
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAGQASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQQMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFIGG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	559	2.2.26 [Sep-21-2011]
B7ZWR6	554	Outer envelope protein 61	yes	no	0.930	0.938	0.581	1e-167
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.200	0.200	0.364	4e-14
Q9FJL3	578	Peptidyl-prolyl cis-trans	no	no	0.225	0.217	0.325	4e-13
Q9LDC0	365	Peptidyl-prolyl cis-trans	no	no	0.237	0.364	0.333	1e-12
A4K2V0	309	Mitochondrial import rece	yes	no	0.257	0.466	0.320	1e-12
Q15785	309	Mitochondrial import rece	yes	no	0.257	0.466	0.314	2e-12
Q38931	551	Peptidyl-prolyl cis-trans	no	no	0.223	0.226	0.335	3e-12
P0C1I1	364	Peptidyl-prolyl cis-trans	N/A	no	0.203	0.313	0.353	2e-11
Q5RAP0	929	Protein unc-45 homolog A	no	no	0.207	0.124	0.336	1e-10
Q3KRD5	309	Mitochondrial import rece	yes	no	0.173	0.313	0.372	2e-10

>sp|B7ZWR6|OEP61_ARATH Outer envelope protein 61, chloroplastic OS=Arabidopsis thaliana GN=OEP61 PE=1 SV=1

 Score =  589 bits (1519), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 325/559 (58%), Positives = 399/559 (71%), Gaps = 39/559 (6%)

Query: 1   MMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARI 60
           MM+NP+LM +ATE+MKNMRPEDLK AAEQL HT PE++AEI EK+A ASPE+IA MRA  
Sbjct: 33  MMSNPDLMNMATESMKNMRPEDLKQAAEQLKHTRPEDMAEISEKMAKASPEDIAAMRAHA 92

Query: 61  DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS 120
           DAQ  Y+ NAA+MLKKQGNEL+S G FS+A +KYL AK NL+ I SS+G  +LLACSLN 
Sbjct: 93  DAQFTYQINAAQMLKKQGNELHSRGNFSDAAEKYLRAKNNLKEIPSSKGGAILLACSLNL 152

Query: 121 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
           MSCYLKT Q++ECIK GSEVL YDA+NVKALYRRGQAY+D+G  E+AVSDLS AHEVSP+
Sbjct: 153 MSCYLKTNQHEECIKEGSEVLGYDARNVKALYRRGQAYRDLGLFEDAVSDLSKAHEVSPE 212

Query: 181 DGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLAREKADPS 240
           D TIADVLRD KE L  E      RG++IE+ITEE   V+SG ++             PS
Sbjct: 213 DETIADVLRDVKERLAVEGPGKASRGVVIEDITEE-NNVTSGENKK------------PS 259

Query: 241 KSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFK 300
           K E + + +G  T  + L  L+D+PE+IR+FQNFIS  +PD+ AALSGGKAG++SPDMFK
Sbjct: 260 K-EANGHAQGVKTDVDGLQALRDNPEAIRTFQNFISKTDPDTLAALSGGKAGDMSPDMFK 318

Query: 301 AVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTA 360
             S MI KMSPEE+Q+M+Q ASSF+G+NP A   +  +  NGF P        PDMLK A
Sbjct: 319 TASSMIGKMSPEEIQKMVQTASSFKGDNPFA--PTAPSTENGFTP-------TPDMLKLA 369

Query: 361 SDVMSKMSSEDLQKMFEMESTLKNKVAGQASTAVDPKGISSDPGPRLSESRERSAVNGNN 420
           SD+M KMS E+ ++MF M S+L  K    AST+    G +    PR  ES   S  +  N
Sbjct: 370 SDMMGKMSPEERERMFNMASSL--KANAPASTSY---GNAEASEPR--ESLGASGSSSGN 422

Query: 421 VVGQPSSGGFFPNSRTNQQSSFSPSTADLQ-QMRNQMNDPAMKQMFSSMVKNMSPEMMAN 479
               P S GF P       S  S   ADLQ QMRNQM DPAM+QMF+SM+KNM+PEMMA+
Sbjct: 423 SFVAPRS-GFEP-------SIPSAPPADLQEQMRNQMKDPAMRQMFTSMIKNMNPEMMAS 474

Query: 480 MSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMI 539
           MSEQFG+KLS+ED  K QQ M+SLS + L++MM WADR Q G++  KK K WL GK G+I
Sbjct: 475 MSEQFGMKLSQEDAAKAQQAMASLSPDALEKMMRWADRAQTGMEKAKKAKKWLFGKGGLI 534

Query: 540 LAICMLILAVILHRLGFIG 558
            AI ML+LA++LHRLG+IG
Sbjct: 535 FAILMLVLAMVLHRLGYIG 553

Chaperone receptor mediating Hsp70-dependent protein targeting to chloroplasts. Interacts specifically with some chloroplast precursors, but not with mitochondrial precursors. Able to select precursors for delivery to the chloroplast translocase independently of Hsp70.
Arabidopsis thaliana (taxid: 3702)

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 70/118 (59%), Gaps = 6/118 (5%)

Query: 70  AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSMSC 123
           AA   K++GN L+  G+++ A ++Y  A K ++   S       + + L + C+LN+ +C
Sbjct: 400 AAGTKKEEGNALFKSGKYARASKRYEKAAKFIEYDTSFSEDEKKQSKQLKITCNLNNAAC 459

Query: 124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
            LK K Y +  K+ ++VL  D++NVKALYRR QAY  +  LE A  D+  A E+ P++
Sbjct: 460 KLKLKDYKQAEKLCTKVLELDSRNVKALYRRAQAYTQLADLELAEVDIKKALEIDPEN 517

PPIases accelerate the folding of proteins during protein synthesis.

Triticum aestivum (taxid: 4565)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 6/132 (4%)

Query: 68  FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSM 121
             AA   K++GN L+  G+++ A ++Y    K ++   +       + + L +AC+LN  
Sbjct: 407 IEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEEEKKKSKDLKIACNLNDA 466

Query: 122 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
           +C LK K Y E  K+ ++VL  D++NVKA+YRR  AY +   L+ A  D+  A E+ PD+
Sbjct: 467 ACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDN 526

Query: 182 GTIADVLRDAKE 193
             +    +  KE
Sbjct: 527 KEVKIEYKKLKE 538

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9LDC0|FKB42_ARATH Peptidyl-prolyl cis-trans isomerase FKBP42 OS=Arabidopsis thaliana GN=FKBP42 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 8/141 (5%)

Query: 57  RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKK--------NLQGIHSSE 108
           +AR D  +     AA   K  GN L+ E +   A+Q+Y +A           L G +   
Sbjct: 165 KARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDM 224

Query: 109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV 168
              +   C LN  +C +K K+YDE I   + VL  + KN KAL+RRG+A  ++G+++ A 
Sbjct: 225 ALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSAR 284

Query: 169 SDLSNAHEVSPDDGTIADVLR 189
            D   A + +PDD  I   LR
Sbjct: 285 DDFRKAQKYAPDDKAIRRELR 305

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Modulates the uptake of MRP substrates into the vacuole; reduces metolachlor-GS (MOC-GS) and enhances 17-beta-estradiol 17-(beta-D-glucuronide) (E(2)17betaG) uptake. Regulates cell elongation and orientation. Functions as a positive regulator of PGP1-mediated auxin transport. Confers drug modulation of PGP1 efflux activity as interaction with NPA or flavonol quercetin prevents its physical and functional interaction with PGP1. Required for the proper localization of auxin-related ABCB transporters. Plays a role in brassinosteroid (BR) signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|A4K2V0|TOM34_PONAB Mitochondrial import receptor subunit TOM34 OS=Pongo abelii GN=TOMM34 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 83/159 (52%), Gaps = 15/159 (9%)

Query: 39  AEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYL--L 96
           +E  +++A +  +E    + R+ +  + E   AK+LK++GNEL  +G    A++KY   L
Sbjct: 163 SENHKEMAKSKSKETTATKNRVPSAGDVE--KAKVLKEEGNELVKKGNHKKAIEKYSESL 220

Query: 97  AKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ 156
              NL+    S           N   CYL  KQY E +K  +E L  D KNVKA YRR Q
Sbjct: 221 LCSNLESATYS-----------NRALCYLVLKQYTEAVKDCTEALKLDGKNVKAFYRRAQ 269

Query: 157 AYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195
           A+K +   + + +D+SN  ++ P +G    + ++ K+ L
Sbjct: 270 AHKALKDYKSSFADISNLLQIEPRNGPAQKLRQEVKQNL 308

Plays a role in the import of cytosolically synthesized preproteins into mitochondria. Binds the mature portion of precursor proteins. Interacts with cellular components, and possesses weak ATPase activity. May be a chaperone-like protein that helps to keep newly synthesized precursors in an unfolded import compatible state.

Pongo abelii (taxid: 9601)

>sp|Q15785|TOM34_HUMAN Mitochondrial import receptor subunit TOM34 OS=Homo sapiens GN=TOMM34 PE=1 SV=2

 Score = 74.3 bits (181), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 15/159 (9%)

Query: 39  AEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYL--L 96
           +E  +++A +  +E    + R+ +  + E   A++LK++GNEL  +G    A++KY   L
Sbjct: 163 SENHKEMAKSKSKETTATKNRVPSAGDVE--KARVLKEEGNELVKKGNHKKAIEKYSESL 220

Query: 97  AKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ 156
              NL+    S           N   CYL  KQY E +K  +E L  D KNVKA YRR Q
Sbjct: 221 LCSNLESATYS-----------NRALCYLVLKQYTEAVKDCTEALKLDGKNVKAFYRRAQ 269

Query: 157 AYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195
           A+K +   + + +D+SN  ++ P +G    + ++ K+ L
Sbjct: 270 AHKALKDYKSSFADISNLLQIEPRNGPAQKLRQEVKQNL 308

Plays a role in the import of cytosolically synthesized preproteins into mitochondria. Binds the mature portion of precursor proteins. Interacts with cellular components, and possesses weak ATPase activity. May be a chaperone-like protein that helps to keep newly synthesized precursors in an unfolded import compatible state.

Homo sapiens (taxid: 9606)

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score = 73.9 bits (180), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 6/131 (4%)

Query: 57  RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGR 110
           R   D     +  AA   K++GN  +  G++S A ++Y  A K ++   S       + +
Sbjct: 386 RESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFSEEEKKQAK 445

Query: 111 TLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD 170
            L +AC+LN  +C LK K Y +  K+ ++VL  ++ NVKALYRR QAY ++  L+ A  D
Sbjct: 446 ALKVACNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELSDLDLAEFD 505

Query: 171 LSNAHEVSPDD 181
           +  A E+ P++
Sbjct: 506 VKKALEIDPNN 516

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0C1I1|PPID_RHIO9 Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cyp12 PE=3 SV=1

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 63/130 (48%), Gaps = 16/130 (12%)

Query: 71  AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ--------GIHSSEGR--TLLLACSLNS 120
           A  LK  GN  + +G  +NA +KYL A + L              EG+   + + C LN 
Sbjct: 208 ATHLKDIGNTYFKKGDHANAAKKYLKAIRYLNEKPAFDENDPKELEGKFAAIKIPCYLNR 267

Query: 121 MSCYLKTKQYDECIKVGSEVLAYDAKNV------KALYRRGQAYKDIGRLEEAVSDLSNA 174
             C LK  +Y EC+KV + VL YD+K +      KA +RRG A  +    E A+ D   A
Sbjct: 268 SMCALKLGEYSECVKVTTTVLEYDSKYLKPTDITKAYFRRGSAKMNTRDFEGAIEDFEKA 327

Query: 175 HEVSPDDGTI 184
           HE  P+D  I
Sbjct: 328 HEKDPEDAGI 337

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) (taxid: 246409)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5RAP0|UN45A_PONAB Protein unc-45 homolog A OS=Pongo abelii GN=UNC45A PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 6/122 (4%)

Query: 69  NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 128
           ++ + L+K+GNEL+  G +  AL  Y  A     G+ ++     +L    N  +CYLK +
Sbjct: 4   SSVEQLRKEGNELFKCGDYGGALAAYTQA----LGLDATPQDQAVL--HRNRAACYLKLE 57

Query: 129 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 188
            YD+     S+ +  D  +VKALYRR QA + +GRL++AV DL     + P +    + L
Sbjct: 58  DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 117

Query: 189 RD 190
           R+
Sbjct: 118 RN 119

May act as co-chaperone for HSP90 (Potential). Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell (By similarity). May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Pongo abelii (taxid: 9601)

>sp|Q3KRD5|TOM34_RAT Mitochondrial import receptor subunit TOM34 OS=Rattus norvegicus GN=Tomm34 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 64/118 (54%), Gaps = 21/118 (17%)

Query: 71  AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS------CY 124
           A++LK++GNEL  +G    A++KY            SE    LL  SL S +      C+
Sbjct: 193 ARVLKEEGNELVKKGNHKKAIEKY------------SES---LLFSSLESATYSNRALCH 237

Query: 125 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182
           L  KQY E  K  +E L  D KNVKA YRR QAYK +   + +++D+S+  ++ P +G
Sbjct: 238 LVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSLADISSLLQIEPRNG 295

Plays a role in the import of cytosolically synthesized preproteins into mitochondria. Binds the mature portion of precursor proteins. Interacts with cellular components, and possesses weak ATPase activity. May be a chaperone-like protein that helps to keep newly synthesized precursors in an unfolded import compatible state.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	559
296084010	584	unnamed protein product [Vitis vinifera]	0.987	0.945	0.637	0.0
225436083	590	PREDICTED: outer envelope protein 61, ch	0.987	0.935	0.637	0.0
224102985	588	predicted protein [Populus trichocarpa]	0.987	0.938	0.673	0.0
255549607	595	fk506 binding protein, putative [Ricinus	0.996	0.936	0.644	0.0
224132120	559	predicted protein [Populus trichocarpa]	0.933	0.933	0.622	0.0
356517663	581	PREDICTED: uncharacterized protein LOC10	0.976	0.939	0.603	0.0
356544786	590	PREDICTED: uncharacterized protein LOC10	0.978	0.927	0.6	0.0
449448844	569	PREDICTED: outer envelope protein 61, ch	0.966	0.949	0.580	1e-176
297808195	558	hypothetical protein ARALYDRAFT_489045 [	0.942	0.944	0.584	1e-166
13374858	549	putative protein [Arabidopsis thaliana]	0.930	0.947	0.581	1e-166

>gi|296084010|emb|CBI24398.3| unnamed protein product [Vitis vinifera]

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/562 (63%), Positives = 442/562 (78%), Gaps = 10/562 (1%)

Query: 1   MMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARI 60
           MMANPELMR+A+E M NMRPEDL+ AAEQL +  PEE+AEIGEK+AN+SPEEIA MRAR 
Sbjct: 28  MMANPELMRMASETMMNMRPEDLRNAAEQLKYARPEEMAEIGEKMANSSPEEIAAMRARA 87

Query: 61  DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS 120
           D+Q+ Y+ NAA+MLKKQGNEL+++G+F+ A QKYLLAKKNL GI +S+GRTLLLACSLN 
Sbjct: 88  DSQITYQINAAQMLKKQGNELHNKGKFNEASQKYLLAKKNLTGIPASKGRTLLLACSLNL 147

Query: 121 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
           MSCYLKTKQYDECI+ G+EVLAYD KNVKALYRRGQAYK++G+L +AVSDL+ A+ VSP+
Sbjct: 148 MSCYLKTKQYDECIQEGTEVLAYDPKNVKALYRRGQAYKELGQLNDAVSDLNKAYGVSPE 207

Query: 181 DGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLA---REKA 237
           D TI +VLRD KE L+K+ G    R L+IEEITEE  AVS+G+ + S  E      +E  
Sbjct: 208 DETIGEVLRDVKEKLIKQGGEPAQRKLVIEEITEE--AVSTGNGKCSAMENCVTQPQENG 265

Query: 238 DPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPD 297
              KS+   N    +T  E+L  LKDDPE+IRSFQNF+SNA+PD+ AALS GK+GE SPD
Sbjct: 266 ACRKSQSGTNSEDLTTNSEYLQTLKDDPEAIRSFQNFMSNADPDTLAALSAGKSGEYSPD 325

Query: 298 MFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDML 357
           MFK  S MI+KMSPEELQRM+Q+ASSFQ EN +    S+++NF  FRPGS PPN+ P+ML
Sbjct: 326 MFKTASNMISKMSPEELQRMVQMASSFQRENEYFPKGSLDSNFGSFRPGSVPPNLTPEML 385

Query: 358 KTASDVMSKMSSEDLQKMFEMESTLKNKVAGQASTAVDPKGISSDPGPRLSESRERSAVN 417
           KTA+D+M+ MS+E+ QKM EM S+L+ + +     +++  G+SS    +  E+RE SAVN
Sbjct: 386 KTATDMMNNMSTEERQKMLEMASSLRARDSVSTPASLNTDGLSS----KFPETRENSAVN 441

Query: 418 GNNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQ-QMRNQMNDPAMKQMFSSMVKNMSPEM 476
           GNN +G+ SS G F N R   QSSF PSTA +Q QMRNQM DPAM+QMF+SM+KNMSPEM
Sbjct: 442 GNNDMGESSSHGSFSNLRGGSQSSFQPSTAGMQEQMRNQMKDPAMRQMFTSMIKNMSPEM 501

Query: 477 MANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKP 536
           M NM EQFG+KLSRED EK QQ +SS++  +LDRMM WAD +Q+G +  +K KNWLLGKP
Sbjct: 502 MTNMGEQFGVKLSREDAEKAQQALSSITPENLDRMMRWADGIQKGAERARKAKNWLLGKP 561

Query: 537 GMILAICMLILAVILHRLGFIG 558
           GMILAICMLILA+ILHRLG+IG
Sbjct: 562 GMILAICMLILAIILHRLGYIG 583

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436083|ref|XP_002272729.1| PREDICTED: outer envelope protein 61, chloroplastic-like [Vitis vinifera]

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/562 (63%), Positives = 442/562 (78%), Gaps = 10/562 (1%)

Query: 1   MMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARI 60
           MMANPELMR+A+E M NMRPEDL+ AAEQL +  PEE+AEIGEK+AN+SPEEIA MRAR 
Sbjct: 34  MMANPELMRMASETMMNMRPEDLRNAAEQLKYARPEEMAEIGEKMANSSPEEIAAMRARA 93

Query: 61  DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS 120
           D+Q+ Y+ NAA+MLKKQGNEL+++G+F+ A QKYLLAKKNL GI +S+GRTLLLACSLN 
Sbjct: 94  DSQITYQINAAQMLKKQGNELHNKGKFNEASQKYLLAKKNLTGIPASKGRTLLLACSLNL 153

Query: 121 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
           MSCYLKTKQYDECI+ G+EVLAYD KNVKALYRRGQAYK++G+L +AVSDL+ A+ VSP+
Sbjct: 154 MSCYLKTKQYDECIQEGTEVLAYDPKNVKALYRRGQAYKELGQLNDAVSDLNKAYGVSPE 213

Query: 181 DGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLA---REKA 237
           D TI +VLRD KE L+K+ G    R L+IEEITEE  AVS+G+ + S  E      +E  
Sbjct: 214 DETIGEVLRDVKEKLIKQGGEPAQRKLVIEEITEE--AVSTGNGKCSAMENCVTQPQENG 271

Query: 238 DPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPD 297
              KS+   N    +T  E+L  LKDDPE+IRSFQNF+SNA+PD+ AALS GK+GE SPD
Sbjct: 272 ACRKSQSGTNSEDLTTNSEYLQTLKDDPEAIRSFQNFMSNADPDTLAALSAGKSGEYSPD 331

Query: 298 MFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDML 357
           MFK  S MI+KMSPEELQRM+Q+ASSFQ EN +    S+++NF  FRPGS PPN+ P+ML
Sbjct: 332 MFKTASNMISKMSPEELQRMVQMASSFQRENEYFPKGSLDSNFGSFRPGSVPPNLTPEML 391

Query: 358 KTASDVMSKMSSEDLQKMFEMESTLKNKVAGQASTAVDPKGISSDPGPRLSESRERSAVN 417
           KTA+D+M+ MS+E+ QKM EM S+L+ + +     +++  G+SS    +  E+RE SAVN
Sbjct: 392 KTATDMMNNMSTEERQKMLEMASSLRARDSVSTPASLNTDGLSS----KFPETRENSAVN 447

Query: 418 GNNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQ-QMRNQMNDPAMKQMFSSMVKNMSPEM 476
           GNN +G+ SS G F N R   QSSF PSTA +Q QMRNQM DPAM+QMF+SM+KNMSPEM
Sbjct: 448 GNNDMGESSSHGSFSNLRGGSQSSFQPSTAGMQEQMRNQMKDPAMRQMFTSMIKNMSPEM 507

Query: 477 MANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKP 536
           M NM EQFG+KLSRED EK QQ +SS++  +LDRMM WAD +Q+G +  +K KNWLLGKP
Sbjct: 508 MTNMGEQFGVKLSREDAEKAQQALSSITPENLDRMMRWADGIQKGAERARKAKNWLLGKP 567

Query: 537 GMILAICMLILAVILHRLGFIG 558
           GMILAICMLILA+ILHRLG+IG
Sbjct: 568 GMILAICMLILAIILHRLGYIG 589

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102985|ref|XP_002312880.1| predicted protein [Populus trichocarpa] gi|222849288|gb|EEE86835.1| predicted protein [Populus trichocarpa]

 Score =  711 bits (1835), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/561 (67%), Positives = 448/561 (79%), Gaps = 9/561 (1%)

Query: 1   MMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARI 60
           +M+NPEL+++A+E M+NMRPEDLK AAEQL HT PEE+AEIGEK+ NASPEEIA M AR 
Sbjct: 33  VMSNPELVKMASEGMRNMRPEDLKQAAEQLKHTRPEEMAEIGEKMINASPEEIAAMHARA 92

Query: 61  DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS 120
           DAQ  YE NAA+MLKKQGNEL+S+G+F +A QKYLLAK+NL+GI SS+GRTLLLACSLN 
Sbjct: 93  DAQATYEMNAAQMLKKQGNELHSQGKFKDASQKYLLAKQNLKGIPSSKGRTLLLACSLNL 152

Query: 121 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
           MSCYLKTKQYDECIK GSEVL YDAKN KALYRRGQAY+++G+LE AVSDL  AHEVSPD
Sbjct: 153 MSCYLKTKQYDECIKEGSEVLGYDAKNAKALYRRGQAYRELGQLEVAVSDLRKAHEVSPD 212

Query: 181 DGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLAREKADPS 240
           D TIAD+LR+A+E L +E G+H PRG++IEEITEE   VS     SS     ARE  D S
Sbjct: 213 DETIADILRNAEERLAQEGGYHAPRGVIIEEITEEAETVSENLKSSS-----ARESVDTS 267

Query: 241 KSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFK 300
           KS   A    S++ PE L  LKDDPE++RSFQNFISNANP++ AALSG KAGE+SP+MFK
Sbjct: 268 KSGREARSGSSTSNPEPLEALKDDPEAMRSFQNFISNANPETLAALSGAKAGEVSPEMFK 327

Query: 301 AVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTA 360
             S MI KM PEELQ+M+Q+ASSFQGENP   G S ++ FNGFRPG+ PPN+ PDMLKTA
Sbjct: 328 TASNMIGKMPPEELQKMLQMASSFQGENPLTAGSS-DSGFNGFRPGAVPPNVTPDMLKTA 386

Query: 361 SDVMSKMSSEDLQKMFEMESTLK-NKVAGQASTAVDPKGISSDPGPRLSESRERSAVNGN 419
           SD+MSKM SE+LQKMFEM S+L+ N +A  A+ A++ +G S     + +E++E  AVNGN
Sbjct: 387 SDMMSKMPSEELQKMFEMASSLRGNGLAPAAAAALNTEGPSLSARLKPTETQEYFAVNGN 446

Query: 420 NVVGQPSSGGFFPNSRTNQ-QSSFSPSTADLQ-QMRNQMNDPAMKQMFSSMVKNMSPEMM 477
           N + + SS G F +S  N   SSF  ST+D+Q QMRNQM DPAM+QMF+SM+KN+SPEMM
Sbjct: 447 NGISETSSSGDFLSSSRNAPPSSFPASTSDMQEQMRNQMKDPAMRQMFTSMMKNLSPEMM 506

Query: 478 ANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPG 537
           ANMSEQFGIKLS+ED  K QQ MSS S  DLD+MM WADR+QRG +G KK KNWLLG+PG
Sbjct: 507 ANMSEQFGIKLSQEDAAKAQQAMSSFSPEDLDKMMRWADRIQRGAEGAKKAKNWLLGRPG 566

Query: 538 MILAICMLILAVILHRLGFIG 558
           MILAICMLILAVIL  LGFIG
Sbjct: 567 MILAICMLILAVILRWLGFIG 587

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549607|ref|XP_002515855.1| fk506 binding protein, putative [Ricinus communis] gi|223545010|gb|EEF46524.1| fk506 binding protein, putative [Ricinus communis]

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/563 (64%), Positives = 442/563 (78%), Gaps = 6/563 (1%)

Query: 1   MMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARI 60
           MMANPELM++A+E MKNMRPEDL+ AAEQL HT PE +AEIG+K+ANASPEEIA+M AR+
Sbjct: 33  MMANPELMKMASEGMKNMRPEDLRQAAEQLKHTRPEVMAEIGDKMANASPEEIASMHARV 92

Query: 61  DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS 120
           DAQ+ YE NAA+MLKKQGNEL+++GRF +ALQKYLLAKKNL+GI SS+GR+LLLACSLN 
Sbjct: 93  DAQITYELNAAQMLKKQGNELHNQGRFKDALQKYLLAKKNLKGIPSSQGRSLLLACSLNL 152

Query: 121 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
           MSCYLKT+QYDECIK GSEVL YDAKNVKALYRRGQAYK++G LE+AVSDLS AHEVSPD
Sbjct: 153 MSCYLKTRQYDECIKEGSEVLGYDAKNVKALYRRGQAYKELGHLEDAVSDLSKAHEVSPD 212

Query: 181 DGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSS---GSHRSSGTEYLAREKA 237
           D TI+DVLR+AKE +  E G+H   GL+IEE+T+E    SS   GS R +      RE  
Sbjct: 213 DETISDVLREAKERMANEGGNHRQSGLVIEELTKEDDVASSQNLGSSRETSV-LQPRESV 271

Query: 238 DPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPD 297
           D    +   NG G +   E L  LKDDPE+IR+FQNFISNA+P++ +A+SG KAGE+SPD
Sbjct: 272 DARNMKSGTNGSGLTMNSESLQALKDDPEAIRTFQNFISNADPETLSAVSGAKAGELSPD 331

Query: 298 MFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDML 357
           MFK  S MI+KMSP+ELQ+M+Q+ASSF+G N  A   S +++FN FRPGS PPN+ PDML
Sbjct: 332 MFKTASNMISKMSPQELQKMLQMASSFEGGNQFAASSSSDSSFNSFRPGSVPPNVTPDML 391

Query: 358 KTASDVMSKMSSEDLQKMFEMESTLKNKVAGQASTAVDPKGISSDPGPRLSESRERSAVN 417
           K A+D++SKM  E+LQKMFEM S+L+       + A+    ++ D G +L+  RE  AVN
Sbjct: 392 KVATDMVSKMPPEELQKMFEMASSLQGTDTLPVAGALKTNALNLDNGSKLTGQRENCAVN 451

Query: 418 GNNVVGQ-PSSGGFFPNSRTNQQSSFSPSTADLQ-QMRNQMNDPAMKQMFSSMVKNMSPE 475
            +N+ G+  SS  FF ++R   Q SF  STAD+Q Q+RNQM DPAM+QMF+SM+KNMSPE
Sbjct: 452 RSNMNGESSSSNDFFSSTRNASQPSFPSSTADMQEQVRNQMKDPAMRQMFTSMMKNMSPE 511

Query: 476 MMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGK 535
           MMANMSEQFG+KLS ED  K QQ MSSLS  DLDRMM WAD++QRG +G KK KNWLLG+
Sbjct: 512 MMANMSEQFGLKLSMEDAAKAQQAMSSLSPEDLDRMMRWADKIQRGAEGAKKAKNWLLGR 571

Query: 536 PGMILAICMLILAVILHRLGFIG 558
            GMILAICMLILA+ILH LG+IG
Sbjct: 572 SGMILAICMLILAMILHWLGYIG 594

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132120|ref|XP_002328190.1| predicted protein [Populus trichocarpa] gi|222837705|gb|EEE76070.1| predicted protein [Populus trichocarpa]

 Score =  690 bits (1780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/562 (62%), Positives = 422/562 (75%), Gaps = 40/562 (7%)

Query: 1   MMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARI 60
           +M+NPEL+R+A+E+MKNM+P+DLK AAEQL HT PEE+AEIGEK+ NASPEEIA MRAR 
Sbjct: 33  VMSNPELVRMASESMKNMKPDDLKQAAEQLKHTHPEEMAEIGEKMMNASPEEIAAMRARA 92

Query: 61  DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS 120
           D Q  YE NAA+MLKKQGNEL+S+G+F++ALQKYLLAK+NL+GI SS+GRTL LACSLN 
Sbjct: 93  DVQATYEINAAQMLKKQGNELHSQGKFNDALQKYLLAKQNLKGITSSKGRTLWLACSLNL 152

Query: 121 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
           MSCYLKTKQY+ECIK GSEVL YDA NVKALYRRGQAY+++G+LE+AVSDL  AHEVSPD
Sbjct: 153 MSCYLKTKQYNECIKEGSEVLGYDANNVKALYRRGQAYRELGQLEDAVSDLRKAHEVSPD 212

Query: 181 DGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLA---REKA 237
           + TIAD+LR+A+E L +E GHH PRG+                   + TEY     RE A
Sbjct: 213 EETIADILRNAEETLAREGGHHAPRGI-------------------TSTEYQVKQPRESA 253

Query: 238 DPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPD 297
           D SKS        S+T  E L  LKDDPE++RSFQNFISNA+P++ AAL+G KAGE+SPD
Sbjct: 254 DISKSGKGGRNGSSATNSEPLEALKDDPEAMRSFQNFISNADPETLAALNGAKAGEVSPD 313

Query: 298 MFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDML 357
           M KA S MI KMSPEELQRM+Q+ASSFQG  P   G S +++FNGF+ G  PPN+ PDML
Sbjct: 314 MVKAASNMIGKMSPEELQRMLQMASSFQGATPFTAGGSSDSSFNGFKSGVVPPNVTPDML 373

Query: 358 KTASDVMSKMSSEDLQKMFEMESTLKNKVAGQASTAVDPKGISSDPGPRLSESRERSAVN 417
           +TASD M+KMS E+LQKMFEM ++L+    G  S       +++D          RS++ 
Sbjct: 374 RTASDTMNKMSPEELQKMFEMATSLR----GNGSVPAVASALNTD----------RSSLG 419

Query: 418 GNNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQ-QMRNQMNDPAMKQMFSSMVKNMSPEM 476
            +             N+     SSF  ST+D+Q QMRNQM DPAM+QMF+SM+KNMSPEM
Sbjct: 420 ASETSSSRDFFSSSRNAPP---SSFPASTSDMQEQMRNQMKDPAMQQMFTSMMKNMSPEM 476

Query: 477 MANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKP 536
           MANMSEQFGIKLS+ED  K QQ M+SLS  DLD+MM WADR+QRG +G KK KNWLLG+P
Sbjct: 477 MANMSEQFGIKLSQEDAAKAQQAMASLSPEDLDKMMRWADRIQRGAEGAKKAKNWLLGRP 536

Query: 537 GMILAICMLILAVILHRLGFIG 558
           GMILAICMLILA+ILHRLGFIG
Sbjct: 537 GMILAICMLILAIILHRLGFIG 558

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517663|ref|XP_003527506.1| PREDICTED: uncharacterized protein LOC100800315 [Glycine max]

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/562 (60%), Positives = 424/562 (75%), Gaps = 16/562 (2%)

Query: 1   MMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARI 60
           MM+NPELMR+A+E+MKNM  ED K AAEQL HT PEE+AEIGEK+ANASPEE+A MR+R+
Sbjct: 33  MMSNPELMRMASESMKNMSSEDFKLAAEQLKHTRPEEMAEIGEKMANASPEEVAAMRSRV 92

Query: 61  DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS 120
           DAQ+ Y+ +AA+MLKKQGN+L+++GR+++AL+KY+LAK+N++ + S + R LLLACSLN 
Sbjct: 93  DAQIKYQLSAAEMLKKQGNDLHNQGRYNDALKKYILAKENIKEVPSFQSRKLLLACSLNL 152

Query: 121 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
           MSCYLKT+QY+EC+K GSEVLAYDAKN+KALYRRGQAYK++G L++AVSDLS A EVSPD
Sbjct: 153 MSCYLKTRQYNECVKEGSEVLAYDAKNLKALYRRGQAYKELGLLKDAVSDLSMALEVSPD 212

Query: 181 DGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLAREKADPS 240
           D TIA++LRDAKE L  + G H P  L+IEEITE+   V SGS     T    ++  D S
Sbjct: 213 DDTIAELLRDAKEKLAMDGGEHAPGRLVIEEITED---VPSGSSSLEQTVVQPKKSGDSS 269

Query: 241 KSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFK 300
           KS  +AN     T  + L  LK DPE++RSFQNFISN +PD  A+L+ G+  ++SPDM K
Sbjct: 270 KSYSTANNGNPKTNADSLDALKKDPEAVRSFQNFISNTDPDMLASLNAGQFKDVSPDMIK 329

Query: 301 AVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTA 360
             S M++KMSPEELQRM+ +ASSFQG+NP   G S +++FN   PGS PPN+ PDM K A
Sbjct: 330 TTSDMVSKMSPEELQRMLDMASSFQGDNPFFRGGSPDSSFN---PGSMPPNVTPDMFKAA 386

Query: 361 SDVMSKMSSEDLQKMFEMESTLKNKVAGQASTAVD--PKGISSDPGPRLSESRERSAVNG 418
           SD++SKM +++L++MFEM S+LK K +   + AVD   + +S    P        S+ NG
Sbjct: 387 SDMISKMPADELKRMFEMASSLKGKESTPLAAAVDENERNVSRSNLP-------SSSTNG 439

Query: 419 NNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQ-QMRNQMNDPAMKQMFSSMVKNMSPEMM 477
               G+ SS   F N R   QS+F  S+ DLQ QMRNQM DPAM++MFSSMVKNMSPEMM
Sbjct: 440 TTAFGESSSHNVFSNMRNASQSNFPSSSTDLQEQMRNQMKDPAMRKMFSSMVKNMSPEMM 499

Query: 478 ANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPG 537
           ANM EQFG+KLS  +  K  Q MSSLS   LD+MMLWADR+QRGV+  +KTKNWLLGKPG
Sbjct: 500 ANMGEQFGVKLSPGEAAKAHQAMSSLSPESLDKMMLWADRIQRGVESARKTKNWLLGKPG 559

Query: 538 MILAICMLILAVILHRLGFIGG 559
           MI AI MLILAVILHRLGFIGG
Sbjct: 560 MIFAIFMLILAVILHRLGFIGG 581

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544786|ref|XP_003540828.1| PREDICTED: uncharacterized protein LOC100793234 [Glycine max]

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/570 (60%), Positives = 426/570 (74%), Gaps = 23/570 (4%)

Query: 1   MMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARI 60
           MM+NPELMR+A+E+MKNM  ED K AAEQL HT PEE+AEIGEK+ANASPEE+A MR+R+
Sbjct: 33  MMSNPELMRMASESMKNMSAEDFKLAAEQLKHTRPEEMAEIGEKVANASPEEVAAMRSRV 92

Query: 61  DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS 120
           DAQ+ Y+ +AA+MLKKQGN+L+++GR+++AL+KY+LAK+N++ + S + R LLLACSLN 
Sbjct: 93  DAQIKYQLSAAEMLKKQGNDLHNQGRYNDALKKYMLAKENIKEVPSFQSRKLLLACSLNL 152

Query: 121 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
           MSCYLKT QY+ECIK GSEVLAYDAKN+KALYRRGQAYK++G L++AVSDLS A EVSPD
Sbjct: 153 MSCYLKTSQYNECIKEGSEVLAYDAKNLKALYRRGQAYKELGLLKDAVSDLSMALEVSPD 212

Query: 181 DGTIADVLRDAKEILMKEDGHHGPR--------GLLIEEITEEVGAVSSGSHRSSGTEYL 232
           D TI ++LRD KE L  E G H PR        G++ EEIT EV  V SGS        L
Sbjct: 213 DDTITELLRDTKEKLAMEGGEHAPRSIFGIMHLGIVTEEIT-EVEDVPSGSSLKQSVVQL 271

Query: 233 AREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAG 292
            ++  D SKS  +AN     TK + L  LK DPE++RSFQNFISN +P + A+L+ G+  
Sbjct: 272 -KKSGDSSKSYSTANNGIPKTKTDSLDALKKDPEAVRSFQNFISNTDPATLASLNAGQFK 330

Query: 293 EISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNM 352
           ++SPDM K  S M++KMSPEELQRM+ +ASSFQG+NP   G S +++FN   PGS PPN+
Sbjct: 331 DVSPDMIKTTSDMVSKMSPEELQRMLDMASSFQGDNPIFRGGSPDSSFN---PGSMPPNV 387

Query: 353 RPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAGQASTAVD--PKGISSDPGPRLSES 410
            PDM K ASD++SKM ++DL++MFEM S+LK K +   + AVD   + +S    P     
Sbjct: 388 TPDMFKAASDMISKMPADDLKRMFEMASSLKGKESTPLAAAVDENERNVSRSNLP----- 442

Query: 411 RERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQ-QMRNQMNDPAMKQMFSSMV 469
              S+ NG    G+ SS   F N R   QS+F  S+A+LQ QMRNQM DPAM++MF+SMV
Sbjct: 443 --SSSTNGTTAFGESSSHNVFSNMRNASQSNFPSSSANLQEQMRNQMKDPAMRKMFTSMV 500

Query: 470 KNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTK 529
           KNMSPEMMANM EQFG+KLS E+  K QQ MSSLS   LD+MMLWADR+QRGV+  +KTK
Sbjct: 501 KNMSPEMMANMGEQFGVKLSPEEAAKAQQAMSSLSPESLDKMMLWADRIQRGVESARKTK 560

Query: 530 NWLLGKPGMILAICMLILAVILHRLGFIGG 559
           NWLLGKPGMI AI MLILAVILHRLGFIGG
Sbjct: 561 NWLLGKPGMIFAILMLILAVILHRLGFIGG 590

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448844|ref|XP_004142175.1| PREDICTED: outer envelope protein 61, chloroplastic-like [Cucumis sativus] gi|449503433|ref|XP_004162000.1| PREDICTED: outer envelope protein 61, chloroplastic-like [Cucumis sativus]

 Score =  626 bits (1614), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 325/560 (58%), Positives = 407/560 (72%), Gaps = 20/560 (3%)

Query: 1   MMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARI 60
           MMANPELM++A+E+MKNMRP+D K AAEQL HT PE++A+IGEK+ANASPEEIATMR R+
Sbjct: 29  MMANPELMKMASESMKNMRPDDFKYAAEQLKHTRPEDMAKIGEKMANASPEEIATMRTRV 88

Query: 61  DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS 120
           DAQ NYE NAA+MLK QGN+L+S+G+F++A +KYLLAK NL+GI SS+GRTLLLACSLN 
Sbjct: 89  DAQANYELNAAEMLKAQGNKLHSQGKFNDASEKYLLAKNNLKGISSSKGRTLLLACSLNL 148

Query: 121 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
           MSCYLKTKQY +CI+ GSEVLAYD++N KALYRRGQAYK++ + ++AVSDLS AHEVSPD
Sbjct: 149 MSCYLKTKQYHDCIREGSEVLAYDSRNAKALYRRGQAYKELCQFQDAVSDLSKAHEVSPD 208

Query: 181 DGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLAREKADPS 240
           D TIADVL DAK+ L ++ G + P+G++IEEI EE   +S+ S  S   E +   K    
Sbjct: 209 DETIADVLSDAKKKLNEQGGGNVPKGVVIEEIVEEDNPISTNSSVSKPPEVIDNSKI--- 265

Query: 241 KSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFK 300
                A+    S   E L  L+DDPE+IRSFQ F+SNA+PD+ AA++ GK+G ISPDM  
Sbjct: 266 -----ADAYKKSINSESLQGLRDDPEAIRSFQRFVSNADPDTLAAMNFGKSGGISPDMVA 320

Query: 301 AVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTA 360
             S MI+KMSP ELQ M+++ASSFQ  NP   GDS+  N +         NM P+ML +A
Sbjct: 321 TASNMISKMSPSELQDMLKLASSFQEANP-LKGDSLGPNLDS-------ANMTPEMLSSA 372

Query: 361 SDVMSKMSSEDLQKMFEMESTLKNKVAGQASTAVDPKGISSDPGPRLSESRERSAVNGNN 420
           S +MS M  EDLQ+MFE  S+LK   +   +  V P    SD G +  ES++ S      
Sbjct: 373 SRIMSSMPPEDLQRMFETASSLKRNESASGNGNVPP---DSDTGSKSFESQQSSISGSRT 429

Query: 421 VVGQPSSGGFFPNSRTNQQSSFSPSTADLQ-QMRNQMNDPAMKQMFSSMVKNMSPEMMAN 479
                SS        ++  S+   S+ D+Q QMR+QM +PAM+QMF+SM+KNMSPEMMAN
Sbjct: 430 TRNTSSSDALSNLRSSSSNSTIPTSSTDMQEQMRSQMKNPAMQQMFTSMIKNMSPEMMAN 489

Query: 480 MSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMI 539
           MSEQFG+KLS ED  K Q+ +SS S  DLD+MM WAD++QRGV+G KK KNWLLG+PGMI
Sbjct: 490 MSEQFGLKLSPEDAAKAQEAISSFSPEDLDKMMRWADKIQRGVEGGKKAKNWLLGRPGMI 549

Query: 540 LAICMLILAVILHRLGFIGG 559
           LAICMLILAVILH  G IGG
Sbjct: 550 LAICMLILAVILHWFGIIGG 569

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808195|ref|XP_002871981.1| hypothetical protein ARALYDRAFT_489045 [Arabidopsis lyrata subsp. lyrata] gi|297317818|gb|EFH48240.1| hypothetical protein ARALYDRAFT_489045 [Arabidopsis lyrata subsp. lyrata]

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 328/561 (58%), Positives = 403/561 (71%), Gaps = 34/561 (6%)

Query: 1   MMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARI 60
           MM+NP+LM +ATE+MKNMRPEDLK AAEQL HT PE++AEI EK+A ASPE+IA MRA  
Sbjct: 28  MMSNPDLMNMATESMKNMRPEDLKQAAEQLKHTRPEDMAEISEKMAKASPEDIAAMRAHA 87

Query: 61  DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS 120
           DAQ  Y+ NAA+MLKKQGNEL+S G FS+A +KYL AK NL+ I SS+G  +LLACSLN 
Sbjct: 88  DAQFTYQINAAQMLKKQGNELHSRGNFSDAAEKYLRAKNNLKDIPSSKGGAILLACSLNL 147

Query: 121 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
           MSCYLKT Q++EC+K GSEVLA DA+NVKALYRRGQAY+D+G  E+AVSDLS AHEVSP+
Sbjct: 148 MSCYLKTNQHEECVKEGSEVLASDARNVKALYRRGQAYRDLGLFEDAVSDLSKAHEVSPE 207

Query: 181 DGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLAREKADPS 240
           D TIADVLRD KE L  E      RG++IE+ITEE   V+SG ++ S  E    ++    
Sbjct: 208 DETIADVLRDVKERLAVEGPGKASRGVVIEDITEE-NNVTSGGNKKSSKEITGTQR---- 262

Query: 241 KSEHSANG--RGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDM 298
             E + NG  +G  T  + L  LKD+PE+IR+FQNF+S  +PD+ AALSGGKAG++SPDM
Sbjct: 263 --ERNVNGHAQGVKTDVDGLQALKDNPEAIRTFQNFVSKTDPDTLAALSGGKAGDMSPDM 320

Query: 299 FKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLK 358
           FK  S MI KMSPEE+Q+M+Q ASSF+G+NP A   +  +  NGF P        PDMLK
Sbjct: 321 FKTASSMIGKMSPEEIQKMVQTASSFKGDNPFA--PTAPSTENGFTP-------TPDMLK 371

Query: 359 TASDVMSKMSSEDLQKMFEMESTLKNKVAGQASTAVDPKGISSDPGPRLSESRERSAVNG 418
            ASD+MSKMS E+ ++MF M S+L  K    AST+    G +    PR  ES   S  + 
Sbjct: 372 LASDMMSKMSPEERERMFNMASSL--KANAPASTSY---GTAEASEPR--ESLGASGSSS 424

Query: 419 NNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQ-QMRNQMNDPAMKQMFSSMVKNMSPEMM 477
            N    P S GF P       S  S   ADLQ QMRNQM DPAM+QMF+SM+KNM+PEMM
Sbjct: 425 GNSFVAPRS-GFEP-------SIPSAPPADLQEQMRNQMKDPAMRQMFTSMIKNMNPEMM 476

Query: 478 ANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPG 537
           A+MSEQFG+KLS+ED  K QQ M+SLS + L++MM WADR Q G++  KK K WLLGK G
Sbjct: 477 ASMSEQFGMKLSQEDAAKAQQAMASLSPDALEKMMRWADRAQTGMEKAKKAKKWLLGKGG 536

Query: 538 MILAICMLILAVILHRLGFIG 558
           +I AI ML+LA+ILHRLG+IG
Sbjct: 537 LIFAILMLVLAMILHRLGYIG 557

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13374858|emb|CAC34492.1| putative protein [Arabidopsis thaliana]

 Score =  590 bits (1521), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 325/559 (58%), Positives = 399/559 (71%), Gaps = 39/559 (6%)

Query: 1   MMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARI 60
           MM+NP+LM +ATE+MKNMRPEDLK AAEQL HT PE++AEI EK+A ASPE+IA MRA  
Sbjct: 28  MMSNPDLMNMATESMKNMRPEDLKQAAEQLKHTRPEDMAEISEKMAKASPEDIAAMRAHA 87

Query: 61  DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS 120
           DAQ  Y+ NAA+MLKKQGNEL+S G FS+A +KYL AK NL+ I SS+G  +LLACSLN 
Sbjct: 88  DAQFTYQINAAQMLKKQGNELHSRGNFSDAAEKYLRAKNNLKEIPSSKGGAILLACSLNL 147

Query: 121 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
           MSCYLKT Q++ECIK GSEVL YDA+NVKALYRRGQAY+D+G  E+AVSDLS AHEVSP+
Sbjct: 148 MSCYLKTNQHEECIKEGSEVLGYDARNVKALYRRGQAYRDLGLFEDAVSDLSKAHEVSPE 207

Query: 181 DGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLAREKADPS 240
           D TIADVLRD KE L  E      RG++IE+ITEE   V+SG ++             PS
Sbjct: 208 DETIADVLRDVKERLAVEGPGKASRGVVIEDITEE-NNVTSGENKK------------PS 254

Query: 241 KSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFK 300
           K E + + +G  T  + L  L+D+PE+IR+FQNFIS  +PD+ AALSGGKAG++SPDMFK
Sbjct: 255 K-EANGHAQGVKTDVDGLQALRDNPEAIRTFQNFISKTDPDTLAALSGGKAGDMSPDMFK 313

Query: 301 AVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTA 360
             S MI KMSPEE+Q+M+Q ASSF+G+NP A   +  +  NGF P        PDMLK A
Sbjct: 314 TASSMIGKMSPEEIQKMVQTASSFKGDNPFA--PTAPSTENGFTP-------TPDMLKLA 364

Query: 361 SDVMSKMSSEDLQKMFEMESTLKNKVAGQASTAVDPKGISSDPGPRLSESRERSAVNGNN 420
           SD+M KMS E+ ++MF M S+L  K    AST+    G +    PR  ES   S  +  N
Sbjct: 365 SDMMGKMSPEERERMFNMASSL--KANAPASTSY---GNAEASEPR--ESLGASGSSSGN 417

Query: 421 VVGQPSSGGFFPNSRTNQQSSFSPSTADLQ-QMRNQMNDPAMKQMFSSMVKNMSPEMMAN 479
               P S GF P       S  S   ADLQ QMRNQM DPAM+QMF+SM+KNM+PEMMA+
Sbjct: 418 SFVAPRS-GFEP-------SIPSAPPADLQEQMRNQMKDPAMRQMFTSMIKNMNPEMMAS 469

Query: 480 MSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMI 539
           MSEQFG+KLS+ED  K QQ M+SLS + L++MM WADR Q G++  KK K WL GK G+I
Sbjct: 470 MSEQFGMKLSQEDAAKAQQAMASLSPDALEKMMRWADRAQTGMEKAKKAKKWLFGKGGLI 529

Query: 540 LAICMLILAVILHRLGFIG 558
            AI ML+LA++LHRLG+IG
Sbjct: 530 FAILMLVLAMVLHRLGYIG 548

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	559
TAIR|locus:504956437	554	TPR7 "AT5G21990" [Arabidopsis	0.824	0.832	0.486	4.6e-105
UNIPROTKB|Q7XIM1	547	OJ1714_H10.131 "Putative uncha	0.810	0.828	0.371	1.3e-70
UNIPROTKB|Q7XRB1	392	OSJNBa0006B20.12 "cDNA clone:0	0.543	0.775	0.396	4e-51
UNIPROTKB|A8I9E1	580	TPR1 "Predicted chloroplast-ta	0.767	0.739	0.266	1.9e-31
TAIR|locus:2037650	164	TPR6 "AT1G58450" [Arabidopsis	0.225	0.768	0.335	1.3e-13
UNIPROTKB|Q2QXS0	370	LOC_Os12g05090 "Os12g0145500 p	0.286	0.432	0.323	6.8e-13
UNIPROTKB|Q7F1F2	580	OJ1191_A10.119 "cDNA clone:J03	0.302	0.291	0.314	7.6e-13
UNIPROTKB|Q15785	309	TOMM34 "Mitochondrial import r	0.257	0.466	0.320	1.9e-12
UNIPROTKB|Q9XFE4	585	OSJNBa0091C07.4 "OSJNBa0091C07	0.237	0.227	0.35	2.7e-12
TAIR|locus:2152561	578	ROF2 "AT5G48570" [Arabidopsis	0.237	0.230	0.323	4.4e-12

TAIR|locus:504956437 TPR7 "AT5G21990" [Arabidopsis thaliana (taxid:3702)]

 Score = 1040 (371.2 bits), Expect = 4.6e-105, P = 4.6e-105
 Identities = 240/493 (48%), Positives = 312/493 (63%)

Query:     1 MMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARI 60
             MM+NP+LM +ATE+MKNMRPEDLK AAEQL HT PE++AEI EK+A ASPE+IA MRA  
Sbjct:    33 MMSNPDLMNMATESMKNMRPEDLKQAAEQLKHTRPEDMAEISEKMAKASPEDIAAMRAHA 92

Query:    61 DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS 120
             DAQ  Y+ NAA+MLKKQGNEL+S G FS+A +KYL AK NL+ I SS+G  +LLACSLN 
Sbjct:    93 DAQFTYQINAAQMLKKQGNELHSRGNFSDAAEKYLRAKNNLKEIPSSKGGAILLACSLNL 152

Query:   121 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
             MSCYLKT Q++ECIK GSEVL YDA+NVKALYRRGQAY+D+G  E+AVSDLS AHEVSP+
Sbjct:   153 MSCYLKTNQHEECIKEGSEVLGYDARNVKALYRRGQAYRDLGLFEDAVSDLSKAHEVSPE 212

Query:   181 DGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLAREKADPS 240
             D TIADVLRD KE L  E      RG++IE+ITEE   V+SG ++             PS
Sbjct:   213 DETIADVLRDVKERLAVEGPGKASRGVVIEDITEE-NNVTSGENKK------------PS 259

Query:   241 KSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFK 300
             K E + + +G  T  + L  L+D+PE+IR+FQNFIS  +PD+ AALSGGKAG++SPDMFK
Sbjct:   260 K-EANGHAQGVKTDVDGLQALRDNPEAIRTFQNFISKTDPDTLAALSGGKAGDMSPDMFK 318

Query:   301 AVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDML-KT 359
               S MI KMSPEE+Q+M+Q ASSF+G+NP A   +  +  NGF P      +  DM+ K 
Sbjct:   319 TASSMIGKMSPEEIQKMVQTASSFKGDNPFA--PTAPSTENGFTPTPDMLKLASDMMGKM 376

Query:   360 ASDVMSKM--SSEDLQKMFEMESTLKNKVAGQASTAVDPKGISSDPG---PRLS-ESRER 413
             + +   +M   +  L+      ++  N  A +   ++   G SS      PR   E    
Sbjct:   377 SPEERERMFNMASSLKANAPASTSYGNAEASEPRESLGASGSSSGNSFVAPRSGFEPSIP 436

Query:   414 SAVNGN------NVVGQPSSGGFFPNSRTNQQSSFSPSTADLQQMRNQMNDPAMKQMFSS 467
             SA   +      N +  P+    F +   N       S ++   M+    D A  Q    
Sbjct:   437 SAPPADLQEQMRNQMKDPAMRQMFTSMIKNMNPEMMASMSEQFGMKLSQEDAAKAQQ--- 493

Query:   468 MVKNMSPEMMANM 480
              + ++SP+ +  M
Sbjct:   494 AMASLSPDALEKM 506

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IBA

GO:0005528 "FK506 binding" evidence=IBA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005829 "cytosol" evidence=IDA

GO:0009707 "chloroplast outer membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0046967 "cytosol to ER transport" evidence=IGI

UNIPROTKB|Q7XIM1 OJ1714_H10.131 "Putative uncharacterized protein OJ1714_H10.131" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 185/498 (37%), Positives = 267/498 (53%)

Query:     1 MMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARI 60
             +++NP L+++A+E+MKNMR +D + AA+Q+  T P+E+ ++ EKLANA+PEE+A M+ + 
Sbjct:    29 LLSNPNLVKLASESMKNMRADDFRRAAQQMNQTRPDEMLDMAEKLANANPEEVAAMKVQA 88

Query:    61 DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS 120
             + QM+Y  + AKMLK+QGNEL+   ++S A  KY LAK NL+ I S    +L L C+LN 
Sbjct:    89 EQQMSYVISGAKMLKQQGNELHRCEQYSEAAAKYKLAKDNLKSIPSQSAHSLQLVCTLNL 148

Query:   121 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
             M+CYLKT+ ++ECI  GSEVL YD+ NVKA YRRGQAYK++G LE AV DLS AHE+SPD
Sbjct:   149 MACYLKTRNFEECINEGSEVLTYDSSNVKAYYRRGQAYKELGNLEAAVGDLSKAHELSPD 208

Query:   181 DGTIADVLRDAKEILMKED-GHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLAREKADP 239
             D TIA VLRDA+E L  E  G   P+G++IEE+ ++    SS S RSS   Y   +  + 
Sbjct:   209 DETIAAVLRDAEEKLAVEGKGAKHPKGVVIEEVVDDASEPSS-SQRSSSPGYTVSQPPEE 267

Query:   240 SKSEHS------ANGRGS----STKPEFLPDLKD-----DPESIRSFQNFISNANPDSFA 284
               S  S      ANG          PE +    D      PE ++      S+ +  S +
Sbjct:   268 GNSRPSGSSSIDANGLSKLGMQGMSPELVKTASDMIGTMKPEELQKMFEAASSLHGTSSS 327

Query:   285 ALS-GGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGF 343
               + G    E+SP+MFK  S MI  MSP+ELQ M+  AS+  G  P A+    E      
Sbjct:   328 PPNLGPNMPEMSPEMFKMASDMIGNMSPDELQNMLNFASNMGG--PSASPLRPENKLQSS 385

Query:   344 RPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAGQASTAVDPKGISSDP 403
                +T    +  +     D     SS+++  M      L N+  G+          SS P
Sbjct:   386 SRATTSSTSQRSV-----DNSQPSSSQNV--MENPHEILSNQRMGE----------SSSP 428

Query:   404 G-PRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQQMRNQMNDPAMK 462
             G P  ++ +E       N +  P+    + +   N       S ++   M+    D A  
Sbjct:   429 GAPSTADMQETM----RNAMKDPAMRKMYASMMKNISPEMMSSMSEQFGMKMTKEDAAKA 484

Query:   463 QMFSSMVKNMSPEMMANM 480
             Q     + ++SPE +  M
Sbjct:   485 Q---EALSSLSPEALDRM 499

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q7XRB1 OSJNBa0006B20.12 "cDNA clone:002-172-D07, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 130/328 (39%), Positives = 193/328 (58%)

Query:     1 MMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIA-TMR-A 58
             +M+NP L+R ATE +K + P+DL+ A EQ++ T  EEV  +  +LA ASPEE+A TM+ A
Sbjct:    29 LMSNPSLLRFATEGIKTLTPDDLRRAGEQMSRTSAEEVLGMSRRLAAASPEELAATMKNA 88

Query:    59 RIDAQMNYEFNA---AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLA 115
             + + Q    + A   A+ LK QGN L+   R ++A  KY LA  NL+ + SS  R+L   
Sbjct:    89 QAEQQRASSYAAVSGARALKDQGNALFRLARHADAAAKYALAVDNLRSVPSSASRSLRAV 148

Query:   116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH 175
             C +N M+C+LKT +  EC+++GSEVL  D  NVKA YRRGQAY+++GR+E AV+DL  AH
Sbjct:   149 CGVNLMACHLKTGRLAECVELGSEVLGLDPGNVKAHYRRGQAYRELGRMEAAVADLRRAH 208

Query:   176 EVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLARE 235
             E+SP++  IAD LRDA+E L    G   PRGL+IEEI EE          + G+E L   
Sbjct:   209 ELSPEEDAIADALRDAEEKL----G--APRGLVIEEIVEE-------EEEAQGSEILPTS 255

Query:   236 KADPSK-SEHSANGRGSSTKPEFLPDLKD---DPESIRSFQNFISNANPDSFAALSGGKA 291
              A  S  S HS      S       ++ +   DP   +   + +   +P++ + + G + 
Sbjct:   256 GATSSSTSGHSVPSPSPSPSAAAAAEMMNSMGDPAMGKMVASVVQGMDPETVSII-GKQF 314

Query:   292 G-EISPDMFKAVSIMINKMSPEELQRMI 318
             G ++S D    +   + K+SPE L++++
Sbjct:   315 GVDLSRDDAARLQDAMKKLSPENLEKVM 342

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|A8I9E1 TPR1 "Predicted chloroplast-targeted protein" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 366 (133.9 bits), Expect = 1.9e-31, P = 1.9e-31
 Identities = 125/469 (26%), Positives = 208/469 (44%)

Query:     5 PELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQM 64
             PE M      MKNM P+ ++ A  Q+    P++     +++A    + +A   A+   QM
Sbjct:     5 PEQMEQMQSMMKNMPPDMMQQAMSQMKDMKPDDWERAKQQMAGMDGDTMARQAAQAQQQM 64

Query:    65 ----NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS 120
                  Y  NA+  LK +GN+L++ G F+ A +KY  AK N+  +   E   L  AC+LN 
Sbjct:    65 AGRTQYVLNASNQLKAEGNQLHNRGAFAEAAEKYERAKTNVASMAGKEAADLARACTLNL 124

Query:   121 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA----HE 176
              SCYL  KQ+ +C++  + VLA +  N+KALYRRGQAY   G   +A SDL  A     E
Sbjct:   125 SSCYLNLKQFSKCLENCNSVLASEPSNLKALYRRGQAYMGTGSWLDASSDLERALKMAKE 184

Query:   177 VSPDDGT-IADVLRDAKEIL--MKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLA 233
             + P     I D L++ K+ +  ++  G   P G      +  V A ++ S    G   + 
Sbjct:   185 IDPSQAVPIRDKLQEVKDRISALRASGQLPPAGA-----STAVAAATAASSADDGDGVV- 238

Query:   234 REKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRS-----FQNFISNANPDSFAALSG 288
              E+A       S +   +  +   +PD   D  ++R          ++    +    L G
Sbjct:   239 -EEAQEMMKGMSDDQLRAMARQMGMPDAPLD--ALRGGLDADLMTKVAKVQAELPPELRG 295

Query:   289 GKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGST 348
               A   +P+  K ++ ++ K +P+  + M ++ S+    +P    +  +    G  PG  
Sbjct:   296 PDAAR-NPEAMKKMAEVMAK-NPDMAKTMGEVLSTI---DPSKLQEMAKQA--GLPPGM- 347

Query:   349 PPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAGQASTAVDPKGISSDPGPRLS 408
               N+ P+M K A++   KMS  +LQ   +  + +    A   S+A D     +      S
Sbjct:   348 --NITPEMAKMAAESFQKMSPSELQAAMDTAAKMGPPPASLGSSAADSSSARASSAAGAS 405

Query:   409 ESRERSAVNGNN--VVGQPSS--GGFFPNSRTNQQSSFSPST-ADLQQM 452
              S   SA   ++    G P    GG  P +     +S  P   A++ +M
Sbjct:   406 TSGRSSAAPASSSLAAGLPPMPPGGMDPRAAAEMMASMPPEQLAEMAKM 454

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2037650 TPR6 "AT1G58450" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 44/131 (33%), Positives = 71/131 (54%)

Query:    67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKK-----NLQGIHSSEGRTLLLACSLNSM 121
             +  AA   K++GN LY   ++  A +KY  A +       +G    + + L ++C LN  
Sbjct:     6 KIEAANRKKEEGNLLYKTQKYERAAKKYNKAAECIENGKFEGGDEKQVKALRVSCFLNGA 65

Query:   122 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
             +C LK K + E I + SEVL  + +NVKALYRR Q+Y ++G L  A  D++ A E  P++
Sbjct:    66 ACSLKLKNFLETIVLCSEVLDIEFQNVKALYRRAQSYIEVGDLISAEMDINRALEADPEN 125

Query:   182 GTIADVLRDAK 192
               +  + +  K
Sbjct:   126 REVKSLYKAMK 136

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

UNIPROTKB|Q2QXS0 LOC_Os12g05090 "Os12g0145500 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 198 (74.8 bits), Expect = 6.8e-13, P = 6.8e-13
 Identities = 55/170 (32%), Positives = 88/170 (51%)

Query:    32 HTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNAL 91
             + PP  +A++  ++     +++   +AR D  +     AA   K +GNE + E +F  A+
Sbjct:   149 NVPP--MADLVYEVELIGFDDVKEGKARSDMTVEERIEAADRRKIEGNEYFKEKKFEEAM 206

Query:    92 QKYLLAKKNLQGIHSSE--G--RTLLLA----CSLNSMSCYLKTKQYDECIKVGSEVLAY 143
             Q+Y +A   +      +  G  R + LA    C LN  +C +K K++DE I   + VL+ 
Sbjct:   207 QQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLKRFDEAIAQCTIVLSE 266

Query:   144 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 193
             D  NVKAL+RRG+A  ++G+ E A  D   A + SP+D  I   LR   E
Sbjct:   267 DENNVKALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIQRELRSLAE 316

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q7F1F2 OJ1191_A10.119 "cDNA clone:J033121G16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 202 (76.2 bits), Expect = 7.6e-13, P = 7.6e-13
 Identities = 57/181 (31%), Positives = 93/181 (51%)

Query:    61 DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-SE-----GRTLLL 114
             D     +   A   K++GN L+  G++  A ++Y  A K ++   S SE      + L +
Sbjct:   396 DLNNTEKIETAGAKKEEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDEKKQSKQLKV 455

Query:   115 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 174
              C+LN+ +C LK K Y +  K+ ++VL  D++NVKALYRR QAY  +  LE A  D+  A
Sbjct:   456 TCNLNNAACKLKLKDYKQAEKLCTKVLELDSQNVKALYRRAQAYMQLADLELAEVDIKKA 515

Query:   175 HEVSPDDGTIADVLRDAKEILMKEDGHHGPR--GLLIEEITE---EVGAVSSGSHRSSGT 229
              E+ PD+  +    ++ KE  +KE      +    +  ++T+   E G   SG+    G+
Sbjct:   516 LEIDPDNRDVKLTYKNLKE-KVKEYNKKDAKFYSNMFAKMTKQPAEDGKAGSGAESKQGS 574

Query:   230 E 230
             E
Sbjct:   575 E 575

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q15785 TOMM34 "Mitochondrial import receptor subunit TOM34" [Homo sapiens (taxid:9606)]

 Score = 191 (72.3 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 51/159 (32%), Positives = 84/159 (52%)

Query:    39 AEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYL--L 96
             +E  +++A +  +E    + R+ +  + E   A++LK++GNEL  +G    A++KY   L
Sbjct:   163 SENHKEMAKSKSKETTATKNRVPSAGDVE--KARVLKEEGNELVKKGNHKKAIEKYSESL 220

Query:    97 AKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ 156
                NL+    S  R L          CYL  KQY E +K  +E L  D KNVKA YRR Q
Sbjct:   221 LCSNLESATYSN-RAL----------CYLVLKQYTEAVKDCTEALKLDGKNVKAFYRRAQ 269

Query:   157 AYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195
             A+K +   + + +D+SN  ++ P +G    + ++ K+ L
Sbjct:   270 AHKALKDYKSSFADISNLLQIEPRNGPAQKLRQEVKQNL 308

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=IMP

GO:0016021 "integral to membrane" evidence=TAS

UNIPROTKB|Q9XFE4 OSJNBa0091C07.4 "OSJNBa0091C07.4 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 197 (74.4 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 49/140 (35%), Positives = 78/140 (55%)

Query:    61 DAQMNYE-FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLL 113
             D + N E   AA   K +GN  +  G+++ A ++Y  A K ++   S       + + L 
Sbjct:   400 DLKDNAEKIEAAAKKKDEGNVWFKMGKYAKASKRYEKAAKYIEYDSSFTDDEKKQSKALK 459

Query:   114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSN 173
             ++C LN+ +C LK K+Y E  K+ ++VL  ++ NVKALYRR QAY ++  LE A  D+  
Sbjct:   460 VSCKLNNAACKLKLKEYREAEKLCTKVLELESTNVKALYRRTQAYIELADLELAELDVKK 519

Query:   174 AHEVSPDDGTIADVLRDAKE 193
             A E+ PD+  +  V +  KE
Sbjct:   520 ALEIDPDNRDVKMVYKTLKE 539

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 4.4e-12, P = 4.4e-12
 Identities = 45/139 (32%), Positives = 72/139 (51%)

Query:    61 DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ--GIHSSE----GRTLLL 114
             D        AA   K++GN L+  G+++ A ++Y    K ++       E     + L +
Sbjct:   400 DMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEEEKKKSKDLKI 459

Query:   115 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 174
             AC+LN  +C LK K Y E  K+ ++VL  D++NVKA+YRR  AY +   L+ A  D+  A
Sbjct:   460 ACNLNDAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKA 519

Query:   175 HEVSPDDGTIADVLRDAKE 193
              E+ PD+  +    +  KE
Sbjct:   520 LEIDPDNKEVKIEYKKLKE 538

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B7ZWR6	OEP61_ARATH	No assigned EC number	0.5813	0.9302	0.9386	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017447001 SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (573 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	559
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-12
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	4e-05
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	6e-05
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.001
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.001
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 62.0 bits (151), Expect = 5e-12
 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 9/109 (8%)

Query: 72  KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 131
           + L   GN  Y  G +  AL+ Y  A +    +            +      Y K  +Y+
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALE----LDPDNADAYYNLAA-----AYYKLGKYE 51

Query: 132 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
           E ++   + L  D  N KA Y  G AY  +G+ EEA+     A E+ P+
Sbjct: 52  EALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 21/59 (35%), Positives = 29/59 (49%)

Query: 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
            Y K   YDE ++   + L  D  N  A Y    AY  +G+ EEA+ D   A E+ PD+
Sbjct: 9   LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN 67

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-RLEEAVSDLSNAHEVSP 179
              K   YDE I+   + L  D  N +A Y    AY  +G   EEA+ DL  A E+ P
Sbjct: 12  ALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 46.8 bits (109), Expect = 2e-05
 Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 8/133 (6%)

Query: 66  YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 125
                A+ L   G  L + GR+  AL+    A K      +     L L         YL
Sbjct: 162 ELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGL--------LYL 213

Query: 126 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA 185
           K  +Y+E ++   + L  D  N +ALY       ++GR EEA+  L  A E+ PD   + 
Sbjct: 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLG 273

Query: 186 DVLRDAKEILMKE 198
             L       ++ 
Sbjct: 274 LALLLLLAEALEL 286

Length = 291

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 20/58 (34%), Positives = 25/58 (43%)

Query: 124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
            L+   YDE +      LA      +AL   G+A    GRL EA + L  A    PDD
Sbjct: 7   ALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64

Length = 65

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 40.1 bits (95), Expect = 6e-05
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
            KALY  G AY  +G+ +EA+     A E++P++
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
            +ALY  G AY  +G  +EA+     A E+ P++
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 26/150 (17%)

Query: 26  AAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG 85
            +    + P E   E+ E       +E +      + +  Y    A  LK++GN+ Y   
Sbjct: 92  KSTAPKNAPVEPADELPE------IDESSVANLSEEERKKY----AAKLKEKGNKAYRNK 141

Query: 86  RFSNALQKY---LLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA 142
            F+ A++ Y   +  K +   ++ S           N  +C+     +++ ++  +  L 
Sbjct: 142 DFNKAIKLYSKAIECKPD--PVYYS-----------NRAACHNALGDWEKVVEDTTAALE 188

Query: 143 YDAKNVKALYRRGQAYKDIGRLEEAVSDLS 172
            D    KAL RR  AY  +G+  +A+ DL+
Sbjct: 189 LDPDYSKALNRRANAYDGLGKYADALLDLT 218

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
            +ALY  G AY  +G  EEA+     A E+ P++
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	559
KOG0553	304	consensus TPR repeat-containing protein [General f	99.86
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.74
KOG4234	271	consensus TPR repeat-containing protein [General f	99.71
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.62
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.61
PRK15359	144	type III secretion system chaperone protein SscB;	99.6
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.59
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.59
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.57
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.56
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.55
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.5
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	99.49
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.49
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.48
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.48
KOG0553	304	consensus TPR repeat-containing protein [General f	99.47
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.45
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.43
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.38
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.38
PRK12370	553	invasion protein regulator; Provisional	99.35
PRK11189	296	lipoprotein NlpI; Provisional	99.35
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.34
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.32
PRK12370	553	invasion protein regulator; Provisional	99.31
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.27
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.26
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.26
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.25
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.24
PRK15359	144	type III secretion system chaperone protein SscB;	99.23
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.23
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.19
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.19
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.17
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.17
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.17
KOG1126	638	consensus DNA-binding cell division cycle control	99.17
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.15
KOG1126	638	consensus DNA-binding cell division cycle control	99.15
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.14
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.13
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.12
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.12
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.12
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.1
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.1
KOG1125	579	consensus TPR repeat-containing protein [General f	99.09
PLN02789	320	farnesyltranstransferase	99.06
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.06
PRK11189	296	lipoprotein NlpI; Provisional	99.05
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.04
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.04
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.04
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.03
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.03
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.01
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.0
PRK15331	165	chaperone protein SicA; Provisional	99.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.0
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.99
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.99
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.99
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.98
KOG2003	840	consensus TPR repeat-containing protein [General f	98.98
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.97
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.95
PRK10803	263	tol-pal system protein YbgF; Provisional	98.94
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.94
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.93
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.92
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.92
KOG1125	579	consensus TPR repeat-containing protein [General f	98.92
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.89
PLN02789	320	farnesyltranstransferase	98.87
KOG4555	175	consensus TPR repeat-containing protein [Function	98.87
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.86
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.86
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.84
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.83
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.81
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.79
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.77
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.77
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.76
PF13512	142	TPR_18: Tetratricopeptide repeat	98.75
PF13371	73	TPR_9: Tetratricopeptide repeat	98.72
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.69
PF12688	120	TPR_5: Tetratrico peptide repeat	98.64
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.64
KOG2076	895	consensus RNA polymerase III transcription factor	98.63
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.61
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.61
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.6
PF13371	73	TPR_9: Tetratricopeptide repeat	98.59
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.59
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.59
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.58
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.56
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.54
PRK14574	822	hmsH outer membrane protein; Provisional	98.54
KOG2076	895	consensus RNA polymerase III transcription factor	98.54
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.53
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.53
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.52
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.49
PRK14574	822	hmsH outer membrane protein; Provisional	98.48
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.48
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.47
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.47
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.46
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.46
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.43
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	98.43
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.43
KOG1129	478	consensus TPR repeat-containing protein [General f	98.42
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.41
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.4
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.4
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.38
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.38
KOG2003	840	consensus TPR repeat-containing protein [General f	98.35
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.34
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.33
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.31
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.31
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.3
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.28
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.27
PRK11906	458	transcriptional regulator; Provisional	98.27
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.27
PRK10803	263	tol-pal system protein YbgF; Provisional	98.26
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.26
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.26
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.24
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.24
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.23
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.23
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.22
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.21
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.2
KOG1310	758	consensus WD40 repeat protein [General function pr	98.18
PRK15331	165	chaperone protein SicA; Provisional	98.16
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.15
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.14
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.13
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.13
KOG4234	271	consensus TPR repeat-containing protein [General f	98.11
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.1
KOG1129	478	consensus TPR repeat-containing protein [General f	98.1
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.09
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.07
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.07
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.05
PF12688	120	TPR_5: Tetratrico peptide repeat	98.04
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.0
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.98
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.97
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.96
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.93
PRK11906	458	transcriptional regulator; Provisional	97.92
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.89
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.88
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.87
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.8
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.8
PF13512	142	TPR_18: Tetratricopeptide repeat	97.78
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.73
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.73
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.71
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.71
PRK10941	269	hypothetical protein; Provisional	97.7
PF13428	44	TPR_14: Tetratricopeptide repeat	97.67
PF13431	34	TPR_17: Tetratricopeptide repeat	97.65
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.65
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.63
KOG4555	175	consensus TPR repeat-containing protein [Function	97.62
PF13428	44	TPR_14: Tetratricopeptide repeat	97.61
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.55
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.54
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.51
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.49
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.48
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.48
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.48
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.47
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.47
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.46
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.44
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.42
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.4
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.37
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.35
KOG2471	696	consensus TPR repeat-containing protein [General f	97.29
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.28
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.17
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.16
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.16
KOG1586	288	consensus Protein required for fusion of vesicles	97.14
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.14
PF13431	34	TPR_17: Tetratricopeptide repeat	97.1
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.1
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.09
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.07
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.99
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.99
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.96
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.92
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.86
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.83
PRK04841	903	transcriptional regulator MalT; Provisional	96.82
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.82
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.8
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.72
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.69
PLN03077	857	Protein ECB2; Provisional	96.61
KOG3364	149	consensus Membrane protein involved in organellar	96.59
COG2912	269	Uncharacterized conserved protein [Function unknow	96.57
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.52
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.52
KOG1586	288	consensus Protein required for fusion of vesicles	96.48
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.46
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.39
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.33
PRK04841	903	transcriptional regulator MalT; Provisional	96.26
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.25
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.23
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.18
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.18
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.13
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.12
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.07
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.04
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.04
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.97
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.96
PLN03218	1060	maturation of RBCL 1; Provisional	95.95
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.93
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	95.9
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.89
PLN03077	857	Protein ECB2; Provisional	95.88
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.85
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.84
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.83
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.82
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.78
PRK10941	269	hypothetical protein; Provisional	95.64
PLN03218	1060	maturation of RBCL 1; Provisional	95.59
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.58
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.57
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.54
KOG3364	149	consensus Membrane protein involved in organellar	95.44
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.4
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.38
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.32
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.29
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.15
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.09
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.95
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.94
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	94.84
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.76
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.73
KOG1585	308	consensus Protein required for fusion of vesicles	94.65
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.55
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.49
KOG1585	308	consensus Protein required for fusion of vesicles	94.43
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.39
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	94.24
KOG2471	696	consensus TPR repeat-containing protein [General f	94.22
COG2912	269	Uncharacterized conserved protein [Function unknow	94.21
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.19
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.11
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.08
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.06
KOG2796	366	consensus Uncharacterized conserved protein [Funct	93.94
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.93
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.69
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.43
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.37
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.21
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.17
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.84
COG3118	304	Thioredoxin domain-containing protein [Posttransla	92.72
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	92.55
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	92.07
KOG4507	886	consensus Uncharacterized conserved protein, conta	92.02
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.86
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	91.65
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	91.56
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.46
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	91.15
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	91.11
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	91.02
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.02
COG3947	361	Response regulator containing CheY-like receiver a	90.92
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	90.68
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	90.61
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	90.58
KOG2300	629	consensus Uncharacterized conserved protein [Funct	90.45
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	90.26
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	90.21
KOG2047	835	consensus mRNA splicing factor [RNA processing and	90.13
KOG2300	629	consensus Uncharacterized conserved protein [Funct	89.95
KOG0529	421	consensus Protein geranylgeranyltransferase type I	89.52
PF11116	85	DUF2624: Protein of unknown function (DUF2624); In	89.36
COG3898	531	Uncharacterized membrane-bound protein [Function u	88.86
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	87.56
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	87.55
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	87.45
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	87.19
KOG4814	872	consensus Uncharacterized conserved protein [Funct	86.98
COG5191	435	Uncharacterized conserved protein, contains HAT (H	86.87
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	86.52
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.48
KOG2047	835	consensus mRNA splicing factor [RNA processing and	86.45
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	86.31
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	86.24
KOG0529	421	consensus Protein geranylgeranyltransferase type I	86.19
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	86.01
PHA02537	230	M terminase endonuclease subunit; Provisional	85.96
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	85.91
KOG1550	552	consensus Extracellular protein SEL-1 and related	85.9
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	85.62
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	84.58
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	84.01
smart00727	41	STI1 Heat shock chaperonin-binding motif.	83.91
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	83.64
COG3629	280	DnrI DNA-binding transcriptional activator of the	83.59
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	83.5
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	83.47
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	83.31
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	83.18
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	83.14
PF03672	64	UPF0154: Uncharacterised protein family (UPF0154);	82.99
KOG1310	758	consensus WD40 repeat protein [General function pr	82.82
COG5346	136	Predicted membrane protein [Function unknown]	82.48
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	81.98
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	81.9
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	81.85
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	81.69
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	81.61

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.86  E-value=2.2e-20  Score=186.57  Aligned_cols=122  Identities=28%  Similarity=0.367  Sum_probs=117.3

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      ....++.+|.+||.+.+.++|.+||.+|++||+++|.++-         .|+|||++|.++|.|+.||++|+.+|.+||.
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAV---------yycNRAAAy~~Lg~~~~AVkDce~Al~iDp~  147 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAV---------YYCNRAAAYSKLGEYEDAVKDCESALSIDPH  147 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcch---------HHHHHHHHHHHhcchHHHHHHHHHHHhcChH
Confidence            5667999999999999999999999999999999999976         8999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                      +.++|.|+|.+|+.+|+|++|+..|+++|+++|+++..+..|+.++..+++
T Consensus       148 yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  148 YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999888853

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=2e-17  Score=171.46  Aligned_cols=147  Identities=33%  Similarity=0.491  Sum_probs=129.6

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC------chhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008613           66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE  139 (559)
Q Consensus        66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~------~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~  139 (559)
                      ..+..+...+..||.||+.|+|..|+..|.+|+.....+..      .....++..|+.|++.||+++++|.+|+..|++
T Consensus       203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k  282 (397)
T KOG0543|consen  203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK  282 (397)
T ss_pred             HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence            36777999999999999999999999999999998875432      135678889999999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC-CCCCccchhhhh
Q 008613          140 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG-HHGPRGLLIEEI  212 (559)
Q Consensus       140 AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~-~~~~~~~~i~e~  212 (559)
                      +|+++|+|++++||||.||..+++|+.|+.+|+++++++|+|..+...|..+..+++++.. ++.-|...+...
T Consensus       283 vLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~  356 (397)
T KOG0543|consen  283 VLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL  356 (397)
T ss_pred             HHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999999999999999999999988887754 344455544333

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.71  E-value=1.2e-16  Score=151.02  Aligned_cols=127  Identities=24%  Similarity=0.341  Sum_probs=117.3

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613           66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA  145 (559)
Q Consensus        66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP  145 (559)
                      ..+..+..++..||.+|+.|+|.+|...|.+||.++|..+.    .++..||.|+|.|+++++.|+.||.+|+++|+|+|
T Consensus        90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~----e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p  165 (271)
T KOG4234|consen   90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST----EERSILYSNRAAALIKLRKWESAIEDCSKAIELNP  165 (271)
T ss_pred             HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH----HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc
Confidence            45677999999999999999999999999999999998864    66788999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613          146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  196 (559)
Q Consensus       146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~  196 (559)
                      .+.+++.||+.+|..+.+|++|+.||++.++++|....++..+.++-..+.
T Consensus       166 ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~  216 (271)
T KOG4234|consen  166 TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN  216 (271)
T ss_pred             hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence            999999999999999999999999999999999998888887777655554

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.62  E-value=1.3e-15  Score=162.92  Aligned_cols=171  Identities=17%  Similarity=0.121  Sum_probs=151.7

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008613           65 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD  144 (559)
Q Consensus        65 ~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld  144 (559)
                      ...+.-+.++.++||+|-..+.|++|+.+|.+|+.+.|.+..         ++.|+|.+|+++|..+-||..|+++|+++
T Consensus       246 kldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~---------a~gNla~iYyeqG~ldlAI~~Ykral~~~  316 (966)
T KOG4626|consen  246 KLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAV---------AHGNLACIYYEQGLLDLAIDTYKRALELQ  316 (966)
T ss_pred             cCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchh---------hccceEEEEeccccHHHHHHHHHHHHhcC
Confidence            345556889999999999999999999999999999998865         99999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchhhhhchhhhccCCCCC
Q 008613          145 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSH  224 (559)
Q Consensus       145 P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i~e~~e~~~~~~~~~~  224 (559)
                      |+.+.+|.++|.++..+|+..||+.+|.++|.++|+++++..+|+.++...+..+.+..-|++++ ++.++++++..+..
T Consensus       317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al-~v~p~~aaa~nNLa  395 (966)
T KOG4626|consen  317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKAL-EVFPEFAAAHNNLA  395 (966)
T ss_pred             CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHH-hhChhhhhhhhhHH
Confidence            99999999999999999999999999999999999999999999999999998888888888877 78888877765422


Q ss_pred             CCCchhhhhhhcCCCCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHHHH
Q 008613          225 RSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFIS  276 (559)
Q Consensus       225 ~~s~~~~~~~e~~~s~~~~~~~~~~~~~~~~~~l~~l~~~PEai~~~~~~i~  276 (559)
                                                     ..+...+++-+++.-|+..|+
T Consensus       396 -------------------------------~i~kqqgnl~~Ai~~Ykealr  416 (966)
T KOG4626|consen  396 -------------------------------SIYKQQGNLDDAIMCYKEALR  416 (966)
T ss_pred             -------------------------------HHHHhcccHHHHHHHHHHHHh
Confidence                                           123334667888888888887

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=3.2e-15  Score=145.28  Aligned_cols=161  Identities=28%  Similarity=0.368  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613           20 PEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKK   99 (559)
Q Consensus        20 pedl~~a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~   99 (559)
                      |.++.+.+++++...|+++....|   +++.++              +......+..+||.+|+.|+|.+|+..|..||.
T Consensus       144 PqpL~FviellqVe~P~qYq~e~W---qlsdde--------------Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~  206 (329)
T KOG0545|consen  144 PQPLVFVIELLQVEAPSQYQRETW---QLSDDE--------------KMKAVPVLHQEGNRLFKLGRYKEASSKYREAII  206 (329)
T ss_pred             CCceEeehhhhhccCchhhccccc---cCCchH--------------hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHH
Confidence            566788999999999999999888   667777              677799999999999999999999999999997


Q ss_pred             hcCC--------CCC-chhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008613          100 NLQG--------IHS-SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD  170 (559)
Q Consensus       100 l~p~--------~~~-~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~d  170 (559)
                      +..+        .+. .+.......++.|.++|++..++|-++++.|+.+|+.+|+|+++||+||.|+...-+..+|..|
T Consensus       207 ~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D  286 (329)
T KOG0545|consen  207 CLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKAD  286 (329)
T ss_pred             HHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHH
Confidence            6532        222 1456677889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCH-HHHHHHHHHHHHHHh
Q 008613          171 LSNAHEVSPDDG-TIADVLRDAKEILMK  197 (559)
Q Consensus       171 lekAl~l~P~~~-~a~~~L~~a~~~l~~  197 (559)
                      |.++|+++|.-. .+...|..+..+...
T Consensus       287 ~~~vL~ldpslasvVsrElr~le~r~~e  314 (329)
T KOG0545|consen  287 LQKVLELDPSLASVVSRELRLLENRMAE  314 (329)
T ss_pred             HHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence            999999999753 455666666666543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.60  E-value=3.1e-14  Score=131.62  Aligned_cols=114  Identities=18%  Similarity=0.258  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008613           74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR  153 (559)
Q Consensus        74 lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~  153 (559)
                      +...|..++..|+|++|+.+|.+++.++|.+..         +|+++|.++..+|+|++|+..|.++++++|+++.++++
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~   97 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWR---------AHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQ   97 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            445799999999999999999999999999866         99999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613          154 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  196 (559)
Q Consensus       154 rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~  196 (559)
                      +|.+|..+|++++|+..|++++.++|+++..+..++.++..+.
T Consensus        98 lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359         98 TGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888877764

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=1.5e-14  Score=153.74  Aligned_cols=121  Identities=25%  Similarity=0.394  Sum_probs=115.3

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613           66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA  145 (559)
Q Consensus        66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP  145 (559)
                      ..+..+...+..|+.+|+.|+|..|+.+|+++|..+|.++.         +|.|||.||.+++.|..|+.+|..+|+++|
T Consensus       353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~---------lYsNRAac~~kL~~~~~aL~Da~~~ieL~p  423 (539)
T KOG0548|consen  353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR---------LYSNRAACYLKLGEYPEALKDAKKCIELDP  423 (539)
T ss_pred             hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCc
Confidence            46667889999999999999999999999999999999876         999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                      ++.++|+|.|.++..+.+|+.|.+.|+++++++|++.++...+.++...+
T Consensus       424 ~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  424 NFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999998887776

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=1.4e-14  Score=149.76  Aligned_cols=129  Identities=24%  Similarity=0.266  Sum_probs=119.8

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613           66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA  145 (559)
Q Consensus        66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP  145 (559)
                      ..++..+.++..||.+|+.|+|.+|.++|+++|.++|.+..     ..+.||.|||.++.++|+.++||.+|+.+++|||
T Consensus       244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~-----~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~  318 (486)
T KOG0550|consen  244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK-----TNAKLYGNRALVNIRLGRLREAISDCNEALKIDS  318 (486)
T ss_pred             hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc-----hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence            46778999999999999999999999999999999998643     4678999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613          146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  200 (559)
Q Consensus       146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~  200 (559)
                      .+.++|.+||.||..+++|++|++||+++.++.-+ .++...+.+++..|++.++
T Consensus       319 syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkR  372 (486)
T KOG0550|consen  319 SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKR  372 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999866 7889999999999987654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=2.1e-14  Score=150.83  Aligned_cols=121  Identities=21%  Similarity=0.332  Sum_probs=105.3

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      ..+.+..++.+||.+|+.|+|++||++|++||.++|+.|-         .|.||+.||..+|+|++.+++|+++|+++|+
T Consensus       111 ~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epi---------FYsNraAcY~~lgd~~~Vied~TkALEl~P~  181 (606)
T KOG0547|consen  111 RLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPI---------FYSNRAACYESLGDWEKVIEDCTKALELNPD  181 (606)
T ss_pred             HHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCch---------hhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH
Confidence            4566899999999999999999999999999999999876         9999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Q 008613          147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS-PDDGTIADVLRDAKEILM  196 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~-P~~~~a~~~L~~a~~~l~  196 (559)
                      ++++|+||+.+|..+|++++|+.|..-.+-+. -++..+.-.+.++.+.++
T Consensus       182 Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a  232 (606)
T KOG0547|consen  182 YVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA  232 (606)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH
Confidence            99999999999999999999999998655443 245555555555554443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.56  E-value=1.5e-14  Score=146.28  Aligned_cols=118  Identities=24%  Similarity=0.316  Sum_probs=108.6

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      .+.....++++||.||++|+|++||++|.+++.+.|.++-         .|.|||.+|+++++|..|..+|+.|+.||-.
T Consensus        93 LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV---------~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~  163 (536)
T KOG4648|consen   93 LLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPV---------YHINRALAYLKQKSFAQAEEDCEAAIALDKL  163 (536)
T ss_pred             HHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCcc---------chhhHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence            3555667899999999999999999999999999998876         8999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613          147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  193 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~  193 (559)
                      +.++|.||+.+...||...||.+||+.+|.+.|++.+....+..+..
T Consensus       164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  164 YVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            99999999999999999999999999999999998777666665543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.55  E-value=8.4e-14  Score=147.40  Aligned_cols=118  Identities=18%  Similarity=0.302  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008613           72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL  151 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal  151 (559)
                      ..++.+|+.+|..|+|.+|+.+|.++|+++|.++.         +|+++|.||+++|+|++|+.+|+++|.++|+++.+|
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~---------a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~   73 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE---------LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAY   73 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHH
Confidence            45788999999999999999999999999998865         999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613          152 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  198 (559)
Q Consensus       152 ~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~  198 (559)
                      +++|.+|..+|+|++|+.+|++++.++|++..+...+..+...+...
T Consensus        74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~  120 (356)
T PLN03088         74 LRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE  120 (356)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999998888654

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.50  E-value=1.5e-13  Score=147.51  Aligned_cols=186  Identities=16%  Similarity=0.146  Sum_probs=156.5

Q ss_pred             HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHH
Q 008613           54 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC  133 (559)
Q Consensus        54 ~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eA  133 (559)
                      +-+.....+.+...+.-.+++.++||.+-..|+..+|+++|.+||.++|.+++         ..+|+|.+|.+.+.+++|
T Consensus       303 dlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~had---------am~NLgni~~E~~~~e~A  373 (966)
T KOG4626|consen  303 DLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHAD---------AMNNLGNIYREQGKIEEA  373 (966)
T ss_pred             HHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHhccchHH
Confidence            34445555555556667888999999999999999999999999999999977         899999999999999999


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchhhhhc
Q 008613          134 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEIT  213 (559)
Q Consensus       134 i~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i~e~~  213 (559)
                      +..|.++++..|+.+.++.++|.+|...|++++|+.+|+.++.+.|...+++.+++...+.+++-.++.+-|.++| .+.
T Consensus       374 ~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI-~~n  452 (966)
T KOG4626|consen  374 TRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI-QIN  452 (966)
T ss_pred             HHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH-hcC
Confidence            9999999999999999999999999999999999999999999999999999999999999998888888888888 777


Q ss_pred             hhhhccCCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHHHHcCCcc
Q 008613          214 EEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPD  281 (559)
Q Consensus       214 e~~~~~~~~~~~~s~~~~~~~e~~~s~~~~~~~~~~~~~~~~~~l~~l~~~PEai~~~~~~i~~~dpe  281 (559)
                      +.+++++++..+.                               ...-+.-|++|++|...++ ++|+
T Consensus       453 Pt~AeAhsNLasi-------------------------------~kDsGni~~AI~sY~~aLk-lkPD  488 (966)
T KOG4626|consen  453 PTFAEAHSNLASI-------------------------------YKDSGNIPEAIQSYRTALK-LKPD  488 (966)
T ss_pred             cHHHHHHhhHHHH-------------------------------hhccCCcHHHHHHHHHHHc-cCCC
Confidence            8887776652211                               0111456899999988887 4554

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.49  E-value=2.4e-14  Score=145.32  Aligned_cols=242  Identities=18%  Similarity=0.146  Sum_probs=160.3

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      .+..+...+..+..++..|.+++||+.|+.+|.++|....         +|.+++.+|++++++..||++|..+|+++|+
T Consensus       110 ~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~---------l~~kr~sv~lkl~kp~~airD~d~A~ein~D  180 (377)
T KOG1308|consen  110 MMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAI---------LYAKRASVFLKLKKPNAAIRDCDFAIEINPD  180 (377)
T ss_pred             HHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhh---------hcccccceeeeccCCchhhhhhhhhhccCcc
Confidence            4556778888999999999999999999999999998755         9999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchhhhhchhhhcc-------
Q 008613          147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAV-------  219 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i~e~~e~~~~~-------  219 (559)
                      ..+.|-.||.++..+|+|++|..||+.+++++- ++.+-..|.++....+..++....+++..++........       
T Consensus       181 sa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~-dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e~~~~~r~er~r~~r~  259 (377)
T KOG1308|consen  181 SAKGYKFRGYAERLLGNWEEAAHDLALACKLDY-DEANSATLKEVFPNAGKIEEHRRKYERAREEREIKERVERVRYARE  259 (377)
T ss_pred             cccccchhhHHHHHhhchHHHHHHHHHHHhccc-cHHHHHHHHHhccchhhhhhchhHHHHHHHHhcccccccccccccc
Confidence            999999999999999999999999999999984 345555666665555444443333333332222110000       


Q ss_pred             CCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCCCCCccccC---CC---C------CHHHHHHHHHHHHcCCcchhhhhc
Q 008613          220 SSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPD---LK---D------DPESIRSFQNFISNANPDSFAALS  287 (559)
Q Consensus       220 ~~~~~~~s~~~~~~~e~~~s~~~~~~~~~~~~~~~~~~l~~---l~---~------~PEai~~~~~~i~~~dpe~la~m~  287 (559)
                      +..-.+-++... ..+.+.-.+...++++..++.++..-..   ++   -      .|-.+- +.+.+.  |||-+++++
T Consensus       260 ~~e~~~~e~~k~-~~~~~~~~~~~g~~p~~M~g~~~~~~~m~~~m~~~~~n~~~~~~p~~~g-i~ki~~--dpev~aAfq  335 (377)
T KOG1308|consen  260 PEEMANPEEFKR-MLKNPQYRQFLGGFPGGMPGSFPGDKRMTDGMKGFDGNSPVKQQPNQIG-ISKILS--DPEVAAAFQ  335 (377)
T ss_pred             hhhhcChhhhhh-hhccCCCCcccCCCcccCCCCCCCccccccccccCCCCCccccCCCccc-HhhhcC--chHHHHhhc
Confidence            000000000000 0111112222333333333322222111   10   0      111111 333333  677778887


Q ss_pred             CCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008613          288 GGKAGEISPDMFKAVSIMINKMSPEELQRMIQIAS  322 (559)
Q Consensus       288 ~~~~g~~~pdm~k~as~m~~~mspeel~~m~~~as  322 (559)
                      .+...-.-+|..+...|||++-+..++-.+++.-+
T Consensus       336 dp~v~aal~d~~~np~n~~kyq~n~kv~~~i~kl~  370 (377)
T KOG1308|consen  336 DPEVQAALMDVSQNPANMMKYQNNPKVMDVISKLS  370 (377)
T ss_pred             ChHHHhhhhhcccChHHHHHhccChHHHHHHHHHH
Confidence            76666667888999999999999988888888644

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.49  E-value=9.5e-13  Score=118.80  Aligned_cols=122  Identities=19%  Similarity=0.293  Sum_probs=110.9

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008613           65 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD  144 (559)
Q Consensus        65 ~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld  144 (559)
                      ...+.....+...|..++..|+|.+|+..|++++.++|.++.         +|+++|.||.+.|+|++|+..|.++++++
T Consensus        11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---------~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552        11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR---------YWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            334444778889999999999999999999999999888765         99999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          145 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       145 P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                      |+++..++.+|.+|...|++++|+..|+++++++|++.........+...+
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  132 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML  132 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988777766666554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=1.6e-13  Score=145.95  Aligned_cols=113  Identities=25%  Similarity=0.322  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      +..++.+||.+|..|+|+.||.+|+++|.++|.+.-         +|.||..||..+++|++|+++..+.++++|+++++
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhv---------lySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kg   72 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHV---------LYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKG   72 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccc---------hhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhH
Confidence            456789999999999999999999999999999765         99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  192 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~  192 (559)
                      |.|+|.++..+|+|++|+..|.+.|+++|+++.....|..+.
T Consensus        73 y~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   73 YSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999999999999999999999998887

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=2.5e-13  Score=137.23  Aligned_cols=109  Identities=21%  Similarity=0.278  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613           69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  148 (559)
Q Consensus        69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~  148 (559)
                      +.|+.++..||.||+.++|..|+..|+++|...-.+++     +.+.+|.|||+|.+.+|+|..||++|.+++.++|++.
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-----lnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~  153 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-----LNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL  153 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence            36999999999999999999999999999998777654     7788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613          149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  182 (559)
Q Consensus       149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~  182 (559)
                      ++|+|-+.|++.|.++++|+.+++..+.++-+..
T Consensus       154 Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K  187 (390)
T KOG0551|consen  154 KAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK  187 (390)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            9999999999999999999999988877654433

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.47  E-value=1.8e-12  Score=130.23  Aligned_cols=87  Identities=25%  Similarity=0.282  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613          114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  193 (559)
Q Consensus       114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~  193 (559)
                      +.-+-+-|.-+++-++|++||..|++||+++|+++.+|++|+.||..||.|+.||+|++.||.+||.+..+|.+|+.++.
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            34456678888999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             HHHhhcC
Q 008613          194 ILMKEDG  200 (559)
Q Consensus       194 ~l~~~~~  200 (559)
                      .+++.+.
T Consensus       161 ~~gk~~~  167 (304)
T KOG0553|consen  161 ALGKYEE  167 (304)
T ss_pred             ccCcHHH
Confidence            7744433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.45  E-value=4.3e-12  Score=123.58  Aligned_cols=130  Identities=12%  Similarity=0.046  Sum_probs=114.3

Q ss_pred             cHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHH-HHcC
Q 008613           50 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY-LKTK  128 (559)
Q Consensus        50 pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~y-lklg  128 (559)
                      .++...+...++..++..+..++.|..+|..|...|+|++|+..|.+++++.|.++.         +++++|.|+ ...|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~---------~~~~lA~aL~~~~g  122 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE---------LYAALATVLYYQAG  122 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhcC
Confidence            344455666677777777778999999999999999999999999999999999876         999999985 7778


Q ss_pred             C--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008613          129 Q--YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL  188 (559)
Q Consensus       129 ~--y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L  188 (559)
                      +  +++|+..++++++++|+++.+++.+|.++...|+|++|+.+|+++++++|.+..-...+
T Consensus       123 ~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i  184 (198)
T PRK10370        123 QHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV  184 (198)
T ss_pred             CCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            7  59999999999999999999999999999999999999999999999998765444444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.43  E-value=3.1e-12  Score=118.64  Aligned_cols=104  Identities=13%  Similarity=0.107  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      -+.++..|..++..|+|++|+..|+-+..++|.+..         .|+|||.|+..+|+|++||..|.+++.++|+++.+
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~---------y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD---------YWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            777888999999999999999999999999999876         99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  183 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~  183 (559)
                      +++.|.||+.+|+.+.|.+.|+.++.++-.+++
T Consensus       106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~  138 (157)
T PRK15363        106 PWAAAECYLACDNVCYAIKALKAVVRICGEVSE  138 (157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence            999999999999999999999999999844433

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.38  E-value=3.5e-12  Score=144.41  Aligned_cols=134  Identities=14%  Similarity=0.021  Sum_probs=121.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      .+..+..+..+|.+++..|+|++|+..|.+++.++|.+..         +|+++|.+|..+|+|++|+.+|+++++++|+
T Consensus       327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~---------~~~~la~~~~~~g~~~eA~~~~~~al~~~p~  397 (615)
T TIGR00990       327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ---------SYIKRASMNLELGDPDKAEEDFDKALKLNSE  397 (615)
T ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            3556778999999999999999999999999999888755         8999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      ++.+|+.+|.+|..+|++++|+.+|++++.++|++..++..++.+...+++...+...++.++
T Consensus       398 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al  460 (615)
T TIGR00990       398 DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCK  460 (615)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999888877666555555444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.38  E-value=6.5e-12  Score=142.20  Aligned_cols=149  Identities=9%  Similarity=0.005  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHH
Q 008613           52 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  131 (559)
Q Consensus        52 e~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~  131 (559)
                      ++..+...++..+...+.....+..+|.+++..|+|++|+..|.++++++|.++.         +|+++|.+|+.+|+|+
T Consensus       346 ~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~  416 (615)
T TIGR00990       346 KHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD---------IYYHRAQLHFIKGEFA  416 (615)
T ss_pred             CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHH
Confidence            3445666666666666677889999999999999999999999999999998866         9999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          132 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       132 eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      +|+.+|+++++++|++..+++.+|.++..+|++++|+..|++++.++|+++.++..++.+...+++..++...+++++
T Consensus       417 ~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al  494 (615)
T TIGR00990       417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI  494 (615)
T ss_pred             HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999988887776666566555

>PRK12370 invasion protein regulator; Provisional

Probab=99.35  E-value=3.1e-11  Score=135.08  Aligned_cols=144  Identities=9%  Similarity=-0.054  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHH
Q 008613           52 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  131 (559)
Q Consensus        52 e~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~  131 (559)
                      ++..+...+++.+...+..+..+..+|.++...|+|++|+..|.++++++|.++.         +|+++|.+|...|+++
T Consensus       319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------a~~~lg~~l~~~G~~~  389 (553)
T PRK12370        319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD---------IKYYYGWNLFMAGQLE  389 (553)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHH
Confidence            3556666667777777777888888899999999999999999999999888765         8888999999999999


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhhcCCCCC
Q 008613          132 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS-PDDGTIADVLRDAKEILMKEDGHHGP  204 (559)
Q Consensus       132 eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~-P~~~~a~~~L~~a~~~l~~~~~~~~~  204 (559)
                      +|+..|+++++++|.++.+++.++.+++..|++++|+..+++++... |+++.++..++.+...+++.+++...
T Consensus       390 eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~  463 (553)
T PRK12370        390 EALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKL  463 (553)
T ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHH
Confidence            99999999999999988887777878888899999999999888775 67788888888887777665554333

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.35  E-value=1.4e-11  Score=127.16  Aligned_cols=104  Identities=21%  Similarity=0.112  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k  149 (559)
                      .+..+..+|..+...|++.+|+..|.++++++|.++.         +|+++|.+|...|+|++|+..|+++++++|++..
T Consensus        63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~  133 (296)
T PRK11189         63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMAD---------AYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY  133 (296)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            4778999999999999999999999999999998865         9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613          150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  182 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~  182 (559)
                      +|+++|.++...|++++|+.+|++++.++|+++
T Consensus       134 a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        134 AYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            999999999999999999999999999999987

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.34  E-value=1.3e-10  Score=118.04  Aligned_cols=128  Identities=20%  Similarity=0.239  Sum_probs=111.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      .++.+.....-.......++|.++++.|.+.++..|..+...     ...+..++.||.+-+++.+||..|.++|.++|+
T Consensus       265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir-----~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~  339 (504)
T KOG0624|consen  265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIR-----YNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD  339 (504)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccccee-----eeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence            444566666777788999999999999999999999866522     224445679999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 008613          147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  199 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~  199 (559)
                      ++.+|+-|+.+|..-..|++||.+|++|++++++|..+...+..+++..++.+
T Consensus       340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~  392 (504)
T KOG0624|consen  340 DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSG  392 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999988776654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.32  E-value=4.2e-11  Score=140.98  Aligned_cols=166  Identities=4%  Similarity=-0.087  Sum_probs=130.9

Q ss_pred             hhCCChHHHHHHHHHHHccCcHH----------------HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 008613           30 LTHTPPEEVAEIGEKLANASPEE----------------IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQK   93 (559)
Q Consensus        30 l~~~~pee~~~~~~~~~~~~pee----------------~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~   93 (559)
                      ++..+.++......++....|+.                +..+...++..++..+. +..+...|.++.+.|++++|+..
T Consensus       553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~  631 (987)
T PRK09782        553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSD  631 (987)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence            34455555555555544444333                22233334444444454 77889999999999999999999


Q ss_pred             HHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008613           94 YLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSN  173 (559)
Q Consensus        94 Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlek  173 (559)
                      |.+++.+.|.++.         +++++|.++...|++++|+..|.++++++|+++.+++++|.+|..+|++++|+.+|++
T Consensus       632 l~~AL~l~Pd~~~---------a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~  702 (987)
T PRK09782        632 LRAALELEPNNSN---------YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARL  702 (987)
T ss_pred             HHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            9999999999865         8999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCc
Q 008613          174 AHEVSPDDGTIADVLRDAKEILMKEDGHHGPR  205 (559)
Q Consensus       174 Al~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~  205 (559)
                      ++.++|++..+...++.+..+....++.++.+
T Consensus       703 Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~  734 (987)
T PRK09782        703 VIDDIDNQALITPLTPEQNQQRFNFRRLHEEV  734 (987)
T ss_pred             HHhcCCCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999888887777766665554444333

>PRK12370 invasion protein regulator; Provisional

Probab=99.31  E-value=1.4e-11  Score=137.97  Aligned_cols=143  Identities=11%  Similarity=-0.024  Sum_probs=121.4

Q ss_pred             HHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHH
Q 008613           45 LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYS---------EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLA  115 (559)
Q Consensus        45 ~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k---------~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~  115 (559)
                      +....++.+..+...++..+...+..+..+..+|.+++.         .+++.+|+..|.++++++|.++.         
T Consensus       269 ~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~---------  339 (553)
T PRK12370        269 LNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ---------  339 (553)
T ss_pred             HHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH---------
Confidence            444566677777777887777777778888888887663         34589999999999999999876         


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                      +|..+|.++...|+|++|+..|+++++++|+++.+|+.+|.+|...|++++|+..|+++++++|.+..+...+..+....
T Consensus       340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~  419 (553)
T PRK12370        340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH  419 (553)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence            89999999999999999999999999999999999999999999999999999999999999999876654444444444


Q ss_pred             H
Q 008613          196 M  196 (559)
Q Consensus       196 ~  196 (559)
                      +
T Consensus       420 g  420 (553)
T PRK12370        420 T  420 (553)
T ss_pred             c
Confidence            3

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.27  E-value=1e-10  Score=137.84  Aligned_cols=128  Identities=16%  Similarity=0.126  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008613           72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL  151 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal  151 (559)
                      ..+...+..+...|+|++|+..|.++++++|. +.         +|+++|.++.++|++++|+..|++++.++|+++.++
T Consensus       577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~---------a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~  646 (987)
T PRK09782        577 ALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-AN---------AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQ  646 (987)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            33444455566669999999999999999885 43         899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          152 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       152 ~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      +++|.++...|++++|+..|+++++++|+++.++..++.+...+++...+...+++++
T Consensus       647 ~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al  704 (987)
T PRK09782        647 AALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI  704 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988877666666665

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.26  E-value=1.4e-10  Score=101.27  Aligned_cols=112  Identities=15%  Similarity=0.159  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---  147 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---  147 (559)
                      ++.++..|..+++.|+|++|+..|.+++...|.++.      ...+++.+|.+|++.++|++|+..|.+++..+|++   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~   75 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY------APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA   75 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc
Confidence            467889999999999999999999999998877642      34588999999999999999999999999999885   


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008613          148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL  188 (559)
Q Consensus       148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L  188 (559)
                      +.+++.+|.++..++++++|+..|++++...|++..+...+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  116 (119)
T TIGR02795        76 PDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ  116 (119)
T ss_pred             cHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence            67899999999999999999999999999999987765543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.26  E-value=8.5e-12  Score=132.07  Aligned_cols=119  Identities=23%  Similarity=0.329  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      ++.++.+++.+++.+.|+.|+..|.+||+++|++..         ++.||+.+|++.++|..|+.++.+||+++|...++
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~---------~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~   74 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAI---------YFANRALAHLKVESFGGALHDALKAIELDPTYIKA   74 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCccee---------eechhhhhheeechhhhHHHHHHhhhhcCchhhhe
Confidence            677889999999999999999999999999999876         88899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  198 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~  198 (559)
                      |+|+|.++..++++.+|+.+|++...+.|+++.+...+.++...+.++
T Consensus        75 Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~  122 (476)
T KOG0376|consen   75 YVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEE  122 (476)
T ss_pred             eeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998888664

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=2.2e-11  Score=118.48  Aligned_cols=115  Identities=30%  Similarity=0.308  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      +..++..||.+|..++|..||.+|.++|.++|..+.         .|.|++.||+++++|+.+..+|.++++++|+.+++
T Consensus        10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~---------Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~   80 (284)
T KOG4642|consen   10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVAS---------YYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKA   80 (284)
T ss_pred             HHHHHhccccccchhhhchHHHHHHHHHhcCCCcch---------hhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHH
Confidence            778899999999999999999999999999999876         89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHH
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVS-----PDDGTIADVLRDAKEI  194 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~-----P~~~~a~~~L~~a~~~  194 (559)
                      +|.+|.+++....|++||..+.++..+.     |--..+...|..+++.
T Consensus        81 h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~  129 (284)
T KOG4642|consen   81 HYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK  129 (284)
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence            9999999999999999999999997763     2224677777777543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.24  E-value=1.2e-09  Score=104.74  Aligned_cols=138  Identities=16%  Similarity=0.159  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHH
Q 008613           54 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC  133 (559)
Q Consensus        54 ~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eA  133 (559)
                      ..+...++..+...+.....+...|..++..|+|++|+..|.+++...+...       ....++++|.||...|++++|
T Consensus        82 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A  154 (234)
T TIGR02521        82 EKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ-------PARSLENAGLCALKAGDFDKA  154 (234)
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc-------chHHHHHHHHHHHHcCCHHHH
Confidence            3344444444444444566777888888888888888888888887432111       233678889999999999999


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613          134 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  198 (559)
Q Consensus       134 i~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~  198 (559)
                      +..|.+++.++|+++.+++.+|.++...|++++|+..+++++.+.|.++..+..+..+....++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (234)
T TIGR02521       155 EKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDV  219 (234)
T ss_pred             HHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Confidence            99999999999988888999999999999999999999999888887777766666665555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.23  E-value=2.8e-10  Score=105.17  Aligned_cols=101  Identities=6%  Similarity=-0.136  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH
Q 008613           53 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  132 (559)
Q Consensus        53 ~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e  132 (559)
                      +..+...++..+...+.....+..+|.++...|+|++|+..|.+++.++|.++.         .++++|.||..+|++++
T Consensus        40 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~---------a~~~lg~~l~~~g~~~e  110 (144)
T PRK15359         40 YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPE---------PVYQTGVCLKMMGEPGL  110 (144)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH---------HHHHHHHHHHHcCCHHH
Confidence            344555556666666666999999999999999999999999999999999987         99999999999999999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 008613          133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIG  162 (559)
Q Consensus       133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg  162 (559)
                      |+..|.++++++|+++.++..+|.+...++
T Consensus       111 Ai~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359        111 AREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            999999999999999999999999887654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.23  E-value=3.2e-10  Score=108.87  Aligned_cols=142  Identities=10%  Similarity=0.043  Sum_probs=118.3

Q ss_pred             HHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 008613           56 MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK  135 (559)
Q Consensus        56 a~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~  135 (559)
                      +...+...+...+.....+...|..++..|+|++|++.|.+++.+.|.++.         ++++++.+|...|+|++|+.
T Consensus        50 A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~~~g~~~~A~~  120 (234)
T TIGR02521        50 AKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD---------VLNNYGTFLCQQGKYEQAMQ  120 (234)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHHHcccHHHHHH
Confidence            333333333334445788889999999999999999999999999887754         89999999999999999999


Q ss_pred             HHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCcc
Q 008613          136 VGSEVLAYD--AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG  206 (559)
Q Consensus       136 ~~~~AL~ld--P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~  206 (559)
                      .|.+++...  +.....++.+|.++...|++++|+..|++++..+|++..++..++.+....++...+....+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  193 (234)
T TIGR02521       121 QFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLE  193 (234)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999864  56678999999999999999999999999999999999888888888887766655443333

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.19  E-value=1.6e-10  Score=131.58  Aligned_cols=144  Identities=6%  Similarity=-0.061  Sum_probs=124.3

Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613           58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG  137 (559)
Q Consensus        58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~  137 (559)
                      .+++.-...++..++.++.+|......|+|++|...|..++++.|++..         ++.+++.++.+++++++|+..+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~---------a~~~~a~~L~~~~~~eeA~~~~  143 (694)
T PRK15179         73 PELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE---------AFILMLRGVKRQQGIEAGRAEI  143 (694)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH---------HHHHHHHHHHHhccHHHHHHHH
Confidence            4444444456667889999999999999999999999999999998865         8999999999999999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchhh
Q 008613          138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIE  210 (559)
Q Consensus       138 ~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i~  210 (559)
                      ++++..+|+++.+++.+|.++..+|+|++|+..|++++..+|+++.++-.++.+.+..++.+.+...++++++
T Consensus       144 ~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        144 ELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             HHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998899999999999998888887776666665553

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.19  E-value=5.1e-10  Score=127.74  Aligned_cols=120  Identities=15%  Similarity=0.106  Sum_probs=74.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCHHHHH
Q 008613           77 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE----CIKVGSEVLAYDAKNVKALY  152 (559)
Q Consensus        77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e----Ai~~~~~AL~ldP~~~kal~  152 (559)
                      .+..++..|+|++|+..|.+++.+.|.++.         +++++|.+|...|++++    |+..|+++++++|+++.+++
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~---------~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~  288 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALARGLDGAA---------LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVT  288 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            455666666666666666666666665543         56666666666666664    56666666666666666666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCc
Q 008613          153 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPR  205 (559)
Q Consensus       153 ~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~  205 (559)
                      .+|.++...|++++|+..|++++.++|+++.++..++.+....++...+...+
T Consensus       289 ~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l  341 (656)
T PRK15174        289 LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEF  341 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            66666666666666666666666666666666666666555555544433333

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.17  E-value=5.5e-10  Score=127.52  Aligned_cols=143  Identities=13%  Similarity=0.054  Sum_probs=120.7

Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHH
Q 008613           58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN----ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC  133 (559)
Q Consensus        58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~e----Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eA  133 (559)
                      ..++..+...+..+..+..+|..++..|+|++    |+..|++++.+.|.++.         ++.++|.+|...|++++|
T Consensus       233 ~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~---------a~~~lg~~l~~~g~~~eA  303 (656)
T PRK15174        233 QTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR---------IVTLYADALIRTGQNEKA  303 (656)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHHHCCCHHHH
Confidence            33333344444557778889999999999996    89999999999998755         899999999999999999


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          134 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       134 i~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      +..++++++++|+++.+++.+|.+|..+|++++|+..|++++..+|++......++.+...+++.+++...++..+
T Consensus       304 ~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al  379 (656)
T PRK15174        304 IPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYI  379 (656)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988766667777777766666555555544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.17  E-value=5.5e-10  Score=108.83  Aligned_cols=105  Identities=12%  Similarity=0.042  Sum_probs=97.3

Q ss_pred             HcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHc
Q 008613           83 SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY-KDI  161 (559)
Q Consensus        83 k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~-~~l  161 (559)
                      ..+++++++..|.++++.+|.+..         .|+++|.+|...|+|++|+..|+++++++|+++.+++.+|.++ ...
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~~~~---------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~  121 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQNSE---------QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQA  121 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            467889999999999999999976         9999999999999999999999999999999999999999985 677


Q ss_pred             CC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613          162 GR--LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  196 (559)
Q Consensus       162 g~--~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~  196 (559)
                      |+  +++|+..|+++++++|++..++..++.+....+
T Consensus       122 g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g  158 (198)
T PRK10370        122 GQHMTPQTREMIDKALALDANEVTALMLLASDAFMQA  158 (198)
T ss_pred             CCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcC
Confidence            87  599999999999999999999999988877663

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=2.1e-10  Score=120.55  Aligned_cols=176  Identities=18%  Similarity=0.146  Sum_probs=144.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008613           74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR  153 (559)
Q Consensus        74 lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~  153 (559)
                      .--.||-|--++++++|+.+|++||+++|....         +|.-.|.=|+++++-..||..|++|++++|.+-++||.
T Consensus       333 CCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~---------aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYG  403 (559)
T KOG1155|consen  333 CCIIANYYSLRSEHEKAVMYFKRALKLNPKYLS---------AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYG  403 (559)
T ss_pred             eeeehhHHHHHHhHHHHHHHHHHHHhcCcchhH---------HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhh
Confidence            344788899999999999999999999999865         99999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchhhhhchhhhccCCCCCCCCchhhhh
Q 008613          154 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLA  233 (559)
Q Consensus       154 rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i~e~~e~~~~~~~~~~~~s~~~~~~  233 (559)
                      +|++|.-++-+.-|+-.|++|+.+.|+|+.+|..|+++..++.+..++.+-|.+++.- .+         ...+..    
T Consensus       404 LGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~d---------te~~~l----  469 (559)
T KOG1155|consen  404 LGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-GD---------TEGSAL----  469 (559)
T ss_pred             hhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-cc---------cchHHH----
Confidence            9999999999999999999999999999999999999999998888777766666511 00         001111    


Q ss_pred             hhcCCCCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHHHHcCCcchhhhhcCCCCCCCCHHHHH
Q 008613          234 REKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFK  300 (559)
Q Consensus       234 ~e~~~s~~~~~~~~~~~~~~~~~~l~~l~~~PEai~~~~~~i~~~dpe~la~m~~~~~g~~~pdm~k  300 (559)
                                        .........++++.|+.+.|.++|..+.          ..|.++|++.|
T Consensus       470 ------------------~~LakLye~l~d~~eAa~~yek~v~~~~----------~eg~~~~~t~k  508 (559)
T KOG1155|consen  470 ------------------VRLAKLYEELKDLNEAAQYYEKYVEVSE----------LEGEIDDETIK  508 (559)
T ss_pred             ------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHH----------hhcccchHHHH
Confidence                              1123344456789999999999998532          23456666665

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.17  E-value=1.6e-10  Score=125.99  Aligned_cols=149  Identities=15%  Similarity=0.115  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCH
Q 008613           51 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  130 (559)
Q Consensus        51 ee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y  130 (559)
                      ++++.+....+..+...+..-.+|+..|.+|.++++|+.|.-+|.+|++++|....         +.+.+|..|.++|+.
T Consensus       469 ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv---------i~~~~g~~~~~~k~~  539 (638)
T KOG1126|consen  469 EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV---------ILCHIGRIQHQLKRK  539 (638)
T ss_pred             HHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchh---------HHhhhhHHHHHhhhh
Confidence            44555566666666677778899999999999999999999999999999999854         788899999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccch
Q 008613          131 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL  208 (559)
Q Consensus       131 ~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~  208 (559)
                      ++|+..|++|+.+||.++-..|.+|.++..+++|++|+..+++..++.|++..+...++.+.++++....+...+..+
T Consensus       540 d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A  617 (638)
T KOG1126|consen  540 DKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWA  617 (638)
T ss_pred             hHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998877655444443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.15  E-value=2.2e-10  Score=116.90  Aligned_cols=132  Identities=20%  Similarity=0.155  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613           69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  148 (559)
Q Consensus        69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~  148 (559)
                      ..+..|...|.++.+.|++++|+..|.++|+++|.++.         ++..++.++...|+++++...+....+..|+++
T Consensus       144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~---------~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~  214 (280)
T PF13429_consen  144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD---------ARNALAWLLIDMGDYDEAREALKRLLKAAPDDP  214 (280)
T ss_dssp             T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH---------HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH
Confidence            45778899999999999999999999999999999865         788899999999999999999998888889999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      ..+..+|.+|..+|++++|+..|+++++.+|+|+.+...+..+....++.+.+..-++.+.
T Consensus       215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  215 DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred             HHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999998887666555544

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.15  E-value=7.4e-11  Score=128.58  Aligned_cols=136  Identities=18%  Similarity=0.150  Sum_probs=113.4

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008613           65 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD  144 (559)
Q Consensus        65 ~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld  144 (559)
                      ...+..++.|...||||--+++++.||++|.+|++++|.+.         .+|.-+|.=+....+|+.|..+|+.||..+
T Consensus       415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa---------YayTLlGhE~~~~ee~d~a~~~fr~Al~~~  485 (638)
T KOG1126|consen  415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA---------YAYTLLGHESIATEEFDKAMKSFRKALGVD  485 (638)
T ss_pred             hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc---------hhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence            34566799999999999999999999999999999999874         377778888888888888888888888888


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          145 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       145 P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      |++..|||.+|.+|.+.++++.|.-.|++|+.++|.+..+...++.++.++++.+++..-+++++
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~  550 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAI  550 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888877666555444443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=3.6e-10  Score=119.39  Aligned_cols=122  Identities=21%  Similarity=0.169  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613           69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  148 (559)
Q Consensus        69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~  148 (559)
                      ..+..|.-.|..+|-.|++-.|-..+.++|.++|....         +|..|+.+|....+.++-..+|.+|..+||+|+
T Consensus       324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~---------lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~  394 (606)
T KOG0547|consen  324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS---------LYIKRAAAYADENQSEKMWKDFNKAEDLDPENP  394 (606)
T ss_pred             HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch---------HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC
Confidence            34888889999999999999999999999999999876         799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 008613          149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  199 (559)
Q Consensus       149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~  199 (559)
                      .+||.||+.+.-+++|++|+.||++++.++|++.-.+-.+.-+..+..+..
T Consensus       395 dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~  445 (606)
T KOG0547|consen  395 DVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIA  445 (606)
T ss_pred             chhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999877777777777776443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.13  E-value=1.8e-10  Score=92.08  Aligned_cols=66  Identities=29%  Similarity=0.491  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 008613          114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-RLEEAVSDLSNAHEVSP  179 (559)
Q Consensus       114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg-~~eeAi~dlekAl~l~P  179 (559)
                      +.+|+++|.+++..++|++|+.+|+++|+++|+++.+|+++|.+|..+| ++++|+.+|+++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4589999999999999999999999999999999999999999999999 79999999999999998

...

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.12  E-value=2e-09  Score=106.48  Aligned_cols=155  Identities=15%  Similarity=0.024  Sum_probs=122.0

Q ss_pred             HHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC
Q 008613           27 AEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS  106 (559)
Q Consensus        27 ~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~  106 (559)
                      ...+...+.++......++....|..               ......+..+|.+++..|+|++|+..|.++++..|.++.
T Consensus        41 ~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~  105 (235)
T TIGR03302        41 KEALDSGDYTEAIKYFEALESRYPFS---------------PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD  105 (235)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCc---------------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence            33445555555555555444444433               123467888999999999999999999999999998765


Q ss_pred             chhhhhHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCHHHH-----------------HHHHHHHHHc
Q 008613          107 SEGRTLLLACSLNSMSCYLKT--------KQYDECIKVGSEVLAYDAKNVKAL-----------------YRRGQAYKDI  161 (559)
Q Consensus       107 ~e~~~l~~~~~~nlA~~ylkl--------g~y~eAi~~~~~AL~ldP~~~kal-----------------~~rG~A~~~l  161 (559)
                            ...+++.+|.||...        +++++|++.+.++++.+|++..++                 +.+|..|...
T Consensus       106 ------~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~  179 (235)
T TIGR03302       106 ------ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKR  179 (235)
T ss_pred             ------hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                  234788999999887        889999999999999999986442                 4678899999


Q ss_pred             CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHhhcCCC
Q 008613          162 GRLEEAVSDLSNAHEVSPDD---GTIADVLRDAKEILMKEDGHH  202 (559)
Q Consensus       162 g~~eeAi~dlekAl~l~P~~---~~a~~~L~~a~~~l~~~~~~~  202 (559)
                      |++++|+..|++++...|++   ..++..++.+...+++..++.
T Consensus       180 g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~  223 (235)
T TIGR03302       180 GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ  223 (235)
T ss_pred             CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999998765   578888999988887765543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.12  E-value=5.4e-10  Score=90.28  Aligned_cols=99  Identities=30%  Similarity=0.435  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008613           73 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  152 (559)
Q Consensus        73 ~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~  152 (559)
                      .+...|..++..|+|.+|+..|.++++..|.++         .++++++.||...+++++|+..|.+++.+.|.+..+++
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   72 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA---------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYY   72 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHH
Confidence            467899999999999999999999999877764         38899999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008613          153 RRGQAYKDIGRLEEAVSDLSNAHEVSPD  180 (559)
Q Consensus       153 ~rG~A~~~lg~~eeAi~dlekAl~l~P~  180 (559)
                      .+|.++...|++++|...+++++.++|+
T Consensus        73 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          73 NLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999998874

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.12  E-value=2.2e-09  Score=101.82  Aligned_cols=109  Identities=18%  Similarity=0.230  Sum_probs=97.3

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      ....+..+..+|..+...|+|++|+.+|.+++.+.+..+.      ...+++++|.||.++|+|++|+..+.+++.++|+
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  104 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND------RSYILYNMGIIYASNGEHDKALEYYHQALELNPK  104 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            4455888999999999999999999999999998766432      2458999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCC
Q 008613          147 NVKALYRRGQAYKDIGR--------------LEEAVSDLSNAHEVSPDD  181 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~--------------~eeAi~dlekAl~l~P~~  181 (559)
                      +..++..+|.+|..+++              +++|+..+++++.++|++
T Consensus       105 ~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        105 QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            99999999999999988              678888888888888876

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.7e-09  Score=116.20  Aligned_cols=122  Identities=21%  Similarity=0.306  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      +-.+.+.|.++|..+.|.+|+.+|.+++...+.....  .......+.|+|.+|.++++|++||..|+++|.+.|.++.+
T Consensus       414 plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e--~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~  491 (611)
T KOG1173|consen  414 PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE--KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAST  491 (611)
T ss_pred             chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc--ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhH
Confidence            8889999999999999999999999999665554321  12466789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                      |.-.|.+|..+|+++.|+..|.++|.+.|++..+...|+.+.+.
T Consensus       492 ~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  492 HASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999998888876555

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=9.5e-10  Score=115.66  Aligned_cols=144  Identities=15%  Similarity=0.062  Sum_probs=133.5

Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613           58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG  137 (559)
Q Consensus        58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~  137 (559)
                      .-++..++.++.....|-..|-.|...++...||+.|++|++++|.+..         +||.+|++|--++-+.=|+-+|
T Consensus       351 ~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR---------AWYGLGQaYeim~Mh~YaLyYf  421 (559)
T KOG1155|consen  351 MYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR---------AWYGLGQAYEIMKMHFYALYYF  421 (559)
T ss_pred             HHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH---------HHhhhhHHHHHhcchHHHHHHH
Confidence            4555666667777888999999999999999999999999999999865         9999999999999999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchhh
Q 008613          138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIE  210 (559)
Q Consensus       138 ~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i~  210 (559)
                      ++|+++.|.+...|-.+|.||..+++.++|+++|.+++...-.+..++..|+.+++++++.+++...+++.++
T Consensus       422 qkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  422 QKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888889999999999999999998888888774

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.09  E-value=3.8e-10  Score=121.45  Aligned_cols=118  Identities=18%  Similarity=0.139  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k  149 (559)
                      .++....+|..|+-.|+|++||++|+.||...|.+..         +|.++|+.+-...++++||..|++||+|.|.+++
T Consensus       429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~---------lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR  499 (579)
T KOG1125|consen  429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYL---------LWNRLGATLANGNRSEEAISAYNRALQLQPGYVR  499 (579)
T ss_pred             ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHH---------HHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee
Confidence            4777888999999999999999999999999999865         9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHHH
Q 008613          150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD----------GTIADVLRDAKEILM  196 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~----------~~a~~~L~~a~~~l~  196 (559)
                      +.|++|.++..+|.|+||+.+|-.||.+.+..          ..+|..|+.+....+
T Consensus       500 ~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~  556 (579)
T KOG1125|consen  500 VRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMN  556 (579)
T ss_pred             eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999987651          358888886665554

>PLN02789 farnesyltranstransferase

Probab=99.06  E-value=5.4e-09  Score=109.09  Aligned_cols=124  Identities=10%  Similarity=-0.040  Sum_probs=111.6

Q ss_pred             HhHHhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCH--HHHHHHHHH
Q 008613           63 QMNYEFNAAKMLKKQGNELYSEG-RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY--DECIKVGSE  139 (559)
Q Consensus        63 ~~~~~~~~a~~lk~~Gn~~~k~g-~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y--~eAi~~~~~  139 (559)
                      .++..+.....|..+|.++...+ ++.+++..+.+++..+|.+..         +|++|+.++.+++++  ++++.++.+
T Consensus        63 aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq---------aW~~R~~~l~~l~~~~~~~el~~~~k  133 (320)
T PLN02789         63 VIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ---------IWHHRRWLAEKLGPDAANKELEFTRK  133 (320)
T ss_pred             HHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH---------HhHHHHHHHHHcCchhhHHHHHHHHH
Confidence            33334444888999999999988 689999999999999999866         899999999999874  788999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          140 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       140 AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                      +|+++|+|..+|+.|+.++..+++|++|+.++.++|+++|.+..+|.....+...+
T Consensus       134 al~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        134 ILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999887655

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.06  E-value=6.8e-09  Score=97.96  Aligned_cols=109  Identities=17%  Similarity=0.089  Sum_probs=92.5

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      ....+..+...|.+++..|+|++|+..|.+++.+.+....      ...+|+++|.+|...|++++|+..|.+++.++|.
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~  104 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD------RSYILYNIGLIHTSNGEHTKALEYYFQALERNPF  104 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            3445888999999999999999999999999998765322      3458999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCC
Q 008613          147 NVKALYRRGQAYK-------DIGRLE-------EAVSDLSNAHEVSPDD  181 (559)
Q Consensus       147 ~~kal~~rG~A~~-------~lg~~e-------eAi~dlekAl~l~P~~  181 (559)
                      +...+..+|.+|.       .+|+++       +|+..|++++..+|++
T Consensus       105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033        105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            9999999999998       777776       5555666677778765

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.05  E-value=3.6e-09  Score=109.32  Aligned_cols=115  Identities=13%  Similarity=0.008  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH
Q 008613           53 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  132 (559)
Q Consensus        53 ~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e  132 (559)
                      ...+...++..++..+..+..+..+|..+...|+|++|+..|.++++++|.+..         +|+++|.+|...|+|++
T Consensus        80 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------a~~~lg~~l~~~g~~~e  150 (296)
T PRK11189         80 RALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY---------AYLNRGIALYYGGRYEL  150 (296)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHH
Confidence            345556667777777778999999999999999999999999999999998865         89999999999999999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613          133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  177 (559)
Q Consensus       133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l  177 (559)
                      |+++|+++++++|+++...+.+ ..+...+++++|+..|++++..
T Consensus       151 A~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        151 AQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHHHHHHhh
Confidence            9999999999999997433322 2234567888888888766554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.04  E-value=4.4e-10  Score=89.78  Aligned_cols=66  Identities=20%  Similarity=0.249  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCC
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDA  145 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg-~y~eAi~~~~~AL~ldP  145 (559)
                      +..|..+|.+++..|+|++|+.+|+++++++|.++.         +|+++|.||.++| +|++|+.+|+++|+++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~---------~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE---------AYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH---------HHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            778999999999999999999999999999988755         9999999999999 79999999999999998

...

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.04  E-value=1.3e-08  Score=123.30  Aligned_cols=143  Identities=10%  Similarity=0.050  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch-hhhh----HHHHHHHHHHHHH
Q 008613           51 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE-GRTL----LLACSLNSMSCYL  125 (559)
Q Consensus        51 ee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e-~~~l----~~~~~~nlA~~yl  125 (559)
                      .++..+...++..++..+..+..+..+|.++++.|+|++|+.+|++++++.|.+.... ...+    ...++..++.+++
T Consensus       283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~  362 (1157)
T PRK11447        283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL  362 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence            3455566677777776777789999999999999999999999999999988765311 1111    1223456788999


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613          126 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  193 (559)
Q Consensus       126 klg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~  193 (559)
                      +.|++++|+..|+++++++|+++.+++.+|.+|...|++++|+..|+++++++|++..++..+..+..
T Consensus       363 ~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~  430 (1157)
T PRK11447        363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR  430 (1157)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988877777653

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.04  E-value=4.6e-09  Score=103.95  Aligned_cols=117  Identities=16%  Similarity=0.216  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613           69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  148 (559)
Q Consensus        69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~  148 (559)
                      ..+..++..|..++..|+|++|+..|.+++...|.++.      ...+++++|.+|...++|++|+..|+++++.+|+++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~  104 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP  104 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence            34788999999999999999999999999999888753      345789999999999999999999999999999887


Q ss_pred             H---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613          149 K---ALYRRGQAYKDI--------GRLEEAVSDLSNAHEVSPDDGTIADVLRDA  191 (559)
Q Consensus       149 k---al~~rG~A~~~l--------g~~eeAi~dlekAl~l~P~~~~a~~~L~~a  191 (559)
                      .   +++.+|.++...        +++++|+..|++++..+|++..++..+..+
T Consensus       105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~  158 (235)
T TIGR03302       105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM  158 (235)
T ss_pred             chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH
Confidence            6   799999999987        889999999999999999997766555444

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.03  E-value=1.2e-08  Score=116.30  Aligned_cols=135  Identities=10%  Similarity=-0.085  Sum_probs=114.3

Q ss_pred             HHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 008613           56 MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK  135 (559)
Q Consensus        56 a~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~  135 (559)
                      +...+.+.++..+..+.++.+.+.++.+.+++++|+..+.+++...|+++.         .++.+|.|+.++|+|++|+.
T Consensus       105 a~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~---------~~~~~a~~l~~~g~~~~A~~  175 (694)
T PRK15179        105 GLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR---------EILLEAKSWDEIGQSEQADA  175 (694)
T ss_pred             HHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH---------HHHHHHHHHHHhcchHHHHH
Confidence            445555555566666999999999999999999999999999999999876         99999999999999999999


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHH---HHHHHhhc
Q 008613          136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI-ADVLRDA---KEILMKED  199 (559)
Q Consensus       136 ~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a-~~~L~~a---~~~l~~~~  199 (559)
                      .|++++..+|+++.++..+|.++...|+.++|+..|++++.+..+.... ...+.++   ...+.+.+
T Consensus       176 ~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (694)
T PRK15179        176 CFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLAALRRLG  243 (694)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999997665433 3333333   34444444

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.03  E-value=1.4e-09  Score=110.68  Aligned_cols=115  Identities=21%  Similarity=0.230  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613           68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  147 (559)
Q Consensus        68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~  147 (559)
                      ...++...++|+.++.+|+|.+|+..|..|++.+|...         .++|.||.+|+.+|+-..|+.+++++|++.|+.
T Consensus        35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y---------~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF  105 (504)
T KOG0624|consen   35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNY---------QAIFRRATVYLAMGKSKAALQDLSRVLELKPDF  105 (504)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhH---------HHHHHHHHHHhhhcCCccchhhHHHHHhcCccH
Confidence            34588999999999999999999999999999988874         389999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Q 008613          148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---GTIADVLRDA  191 (559)
Q Consensus       148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~---~~a~~~L~~a  191 (559)
                      ..+...||.+++..|++++|..||..+|..+|.+   .++.+.|..+
T Consensus       106 ~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~  152 (504)
T KOG0624|consen  106 MAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI  152 (504)
T ss_pred             HHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH
Confidence            9999999999999999999999999999999965   3444444443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.01  E-value=1.5e-08  Score=98.83  Aligned_cols=118  Identities=14%  Similarity=0.039  Sum_probs=57.0

Q ss_pred             HHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613           59 RIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGS  138 (559)
Q Consensus        59 ~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~  138 (559)
                      .+++.++..+.....|...+-.|-+.|..+.|-+.|++|+.+.|.+.+         +++|-|..++..|+|++|...|+
T Consensus        57 nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd---------VLNNYG~FLC~qg~~~eA~q~F~  127 (250)
T COG3063          57 NLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD---------VLNNYGAFLCAQGRPEEAMQQFE  127 (250)
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc---------hhhhhhHHHHhCCChHHHHHHHH
Confidence            333333333333444445555555555555555555555555555444         45555555555555555555555


Q ss_pred             HHHHcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008613          139 EVLAYDA---KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD  186 (559)
Q Consensus       139 ~AL~ldP---~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~  186 (559)
                      +|+. +|   .....|-++|.|-+..|+++.|..+|+++|+++|+.+....
T Consensus       128 ~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l  177 (250)
T COG3063         128 RALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALL  177 (250)
T ss_pred             HHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHH
Confidence            5543 22   22344555555555555555555555555555554443333

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.00  E-value=7.2e-09  Score=119.28  Aligned_cols=133  Identities=16%  Similarity=0.139  Sum_probs=103.3

Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613           58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG  137 (559)
Q Consensus        58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~  137 (559)
                      ..++..+...+.....+...|..+...|++++|+..|.++++..|.++.         ++.+++.+|.+.|+ .+|+..+
T Consensus       757 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---------~~~~l~~~~~~~~~-~~A~~~~  826 (899)
T TIGR02917       757 KTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV---------VLNNLAWLYLELKD-PRALEYA  826 (899)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHhcCc-HHHHHHH
Confidence            3333334444455677778888888888888888888888888777644         77888888888888 7788888


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613          138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  200 (559)
Q Consensus       138 ~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~  200 (559)
                      ++++.+.|+++..+..+|.+|...|++++|+..|+++++++|.++.++..+..+....++..+
T Consensus       827 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~  889 (899)
T TIGR02917       827 EKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAE  889 (899)
T ss_pred             HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH
Confidence            888888888888888888888888888888888888888888888888888777776655443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15331 chaperone protein SicA; Provisional

Probab=99.00  E-value=7.7e-09  Score=96.60  Aligned_cols=116  Identities=13%  Similarity=0.101  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      -+.++..|-.+|..|+|++|...|+-...+++.++.         .|..+|.|+..+++|++|+..|..+..++++++..
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~---------Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p  107 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD---------YTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP  107 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence            777888999999999999999999999999888866         78999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  196 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~  196 (559)
                      +++.|.||+.+|+.+.|..+|+.++. .|.+..+...-....+.+.
T Consensus       108 ~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~  152 (165)
T PRK15331        108 VFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALK  152 (165)
T ss_pred             cchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998 6777777666555555554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.00  E-value=1.6e-08  Score=116.42  Aligned_cols=124  Identities=22%  Similarity=0.201  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613           68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  147 (559)
Q Consensus        68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~  147 (559)
                      ...+..+...|.+++..|+|++|+..|.+++...|.+..         +++.++.+++..|+|++|+..++++++.+|.+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  192 (899)
T TIGR02917       122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY---------AKLGLAQLALAENRFDEARALIDEVLTADPGN  192 (899)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh---------hHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            345677889999999999999999999999999888765         88999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613          148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  200 (559)
Q Consensus       148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~  200 (559)
                      ..+++.+|.++...|++++|+..|++++.++|++..++..+..+....++..+
T Consensus       193 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~  245 (899)
T TIGR02917       193 VDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEE  245 (899)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999999999999998888877777665554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.99  E-value=9.1e-09  Score=100.26  Aligned_cols=132  Identities=17%  Similarity=0.092  Sum_probs=88.6

Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613           58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG  137 (559)
Q Consensus        58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~  137 (559)
                      +..+..+...++..+.+.+.|..++.+|+|++|...|++|+. +|..+.      ....|.|++.|.++.|+++.|..++
T Consensus        90 e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~------~s~t~eN~G~Cal~~gq~~~A~~~l  162 (250)
T COG3063          90 ESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGE------PSDTLENLGLCALKAGQFDQAEEYL  162 (250)
T ss_pred             HHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCC------cchhhhhhHHHHhhcCCchhHHHHH
Confidence            444444555556677777777777777777777777777776 344433      3346777777777777777777777


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613          138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  196 (559)
Q Consensus       138 ~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~  196 (559)
                      +++|+++|+++-++..++..++..|+|..|...+++....-+-..+.+...-++.+.++
T Consensus       163 ~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~g  221 (250)
T COG3063         163 KRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLG  221 (250)
T ss_pred             HHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhc
Confidence            77777777777777777777777777777777777776655544444443344444443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.99  E-value=1.1e-09  Score=91.44  Aligned_cols=83  Identities=25%  Similarity=0.376  Sum_probs=73.6

Q ss_pred             cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008613           84 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR  163 (559)
Q Consensus        84 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~  163 (559)
                      .|+|++|+..|.+++...|.++       ...+++++|.||++.|+|++|+..+++ +++++.++..++.+|.++..+|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~-------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~   73 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNP-------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK   73 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTH-------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-
T ss_pred             CccHHHHHHHHHHHHHHCCCCh-------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC
Confidence            6899999999999999988632       234788899999999999999999999 88999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 008613          164 LEEAVSDLSNA  174 (559)
Q Consensus       164 ~eeAi~dlekA  174 (559)
                      |++|+..|+++
T Consensus        74 y~eAi~~l~~~   84 (84)
T PF12895_consen   74 YEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999999875

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.99  E-value=9.6e-09  Score=124.49  Aligned_cols=141  Identities=13%  Similarity=0.109  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch-----------------------
Q 008613           52 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE-----------------------  108 (559)
Q Consensus        52 e~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e-----------------------  108 (559)
                      ++..+...++..++..+..+..+..+|.+++..|+|++|+++|+++++++|.+...-                       
T Consensus       366 ~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~  445 (1157)
T PRK11447        366 NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLS  445 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence            344566666666666666788899999999999999999999999999988865310                       


Q ss_pred             ----------hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613          109 ----------GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS  178 (559)
Q Consensus       109 ----------~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~  178 (559)
                                ...+...++.+++.++...|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|++++.++
T Consensus       446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~  525 (1157)
T PRK11447        446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK  525 (1157)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence                      0011123456678889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHH
Q 008613          179 PDDGTIADVLRDAK  192 (559)
Q Consensus       179 P~~~~a~~~L~~a~  192 (559)
                      |+++.++..+....
T Consensus       526 P~~~~~~~a~al~l  539 (1157)
T PRK11447        526 PNDPEQVYAYGLYL  539 (1157)
T ss_pred             CCCHHHHHHHHHHH
Confidence            99988776665543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=1.1e-08  Score=103.68  Aligned_cols=139  Identities=18%  Similarity=0.161  Sum_probs=119.4

Q ss_pred             cCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc
Q 008613           48 ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT  127 (559)
Q Consensus        48 ~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl  127 (559)
                      ..++++......++..++.++..++.|.-+|.+|...+++..|...|.+|+++.|++++         ++..+|.+++..
T Consensus       133 ~~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~---------~~~g~aeaL~~~  203 (287)
T COG4235         133 PAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE---------ILLGLAEALYYQ  203 (287)
T ss_pred             CCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHh
Confidence            45556777888999999999999999999999999999999999999999999999986         666777666554


Q ss_pred             C---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          128 K---QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       128 g---~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                      .   .-.++...++++|++||.++++++.+|..++..|+|.+|+..|+..+.+.|.+..-...+.......
T Consensus       204 a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~  274 (287)
T COG4235         204 AGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARA  274 (287)
T ss_pred             cCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence            3   4678889999999999999999999999999999999999999999999987765555555444333

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.98  E-value=1.7e-09  Score=113.08  Aligned_cols=124  Identities=19%  Similarity=0.167  Sum_probs=112.7

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613           66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA  145 (559)
Q Consensus        66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP  145 (559)
                      .....+.++.++||..|..|+|++|++.|.+||..+..+.         .+++|.|..+..+|++++|+++|-++..+--
T Consensus       485 ~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~---------ealfniglt~e~~~~ldeald~f~klh~il~  555 (840)
T KOG2003|consen  485 IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT---------EALFNIGLTAEALGNLDEALDCFLKLHAILL  555 (840)
T ss_pred             ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH---------HHHHHhcccHHHhcCHHHHHHHHHHHHHHHH
Confidence            3444678899999999999999999999999998765553         4999999999999999999999999988888


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613          146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  198 (559)
Q Consensus       146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~  198 (559)
                      +++.+++.++.+|..+.+..+|+++|-++..+-|+++.++..|+.+..+-++.
T Consensus       556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdk  608 (840)
T KOG2003|consen  556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDK  608 (840)
T ss_pred             hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccch
Confidence            99999999999999999999999999999999999999999999987766543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=1.2e-09  Score=113.55  Aligned_cols=156  Identities=17%  Similarity=0.111  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch---hhhhHHHHHHHHHHHHHHcCCH
Q 008613           54 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE---GRTLLLACSLNSMSCYLKTKQY  130 (559)
Q Consensus        54 ~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e---~~~l~~~~~~nlA~~ylklg~y  130 (559)
                      ..+..+++..++.....+.+++..|.+++-..+.+.|+.+|.++|.++|.+....   ...-....+.++|.-.++.|+|
T Consensus       186 ~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y  265 (486)
T KOG0550|consen  186 DEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNY  265 (486)
T ss_pred             hhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccch
Confidence            4455677777777888899999999999999999999999999999999875432   1122455788899999999999


Q ss_pred             HHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCcc
Q 008613          131 DECIKVGSEVLAYDAKN----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG  206 (559)
Q Consensus       131 ~eAi~~~~~AL~ldP~~----~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~  206 (559)
                      .+|.+.|+++|.++|++    ++.|++|+.++..+|+.++|+.|++.++.|+|..-.++.+.+.++..+++.+++.+.++
T Consensus       266 ~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~  345 (486)
T KOG0550|consen  266 RKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYE  345 (486)
T ss_pred             hHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999986    67899999999999999999999999999999998888888888888887776655555


Q ss_pred             chh
Q 008613          207 LLI  209 (559)
Q Consensus       207 ~~i  209 (559)
                      +++
T Consensus       346 ~a~  348 (486)
T KOG0550|consen  346 KAM  348 (486)
T ss_pred             HHH
Confidence            554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.95  E-value=2.7e-08  Score=115.68  Aligned_cols=115  Identities=14%  Similarity=0.111  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      +..+...|..+...|++.+|+.+|.+++.+.|.++.         +++.++.++...|++++|+..+.++++.+|+++. 
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-  118 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD---------YQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-  118 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-
Confidence            667899999999999999999999999999998865         7889999999999999999999999999999999 


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                      ++.+|.++...|++++|+..|+++++++|+++.++..+..+....
T Consensus       119 ~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~  163 (765)
T PRK10049        119 LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN  163 (765)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            999999999999999999999999999999999888887766543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.94  E-value=2.6e-08  Score=101.14  Aligned_cols=110  Identities=12%  Similarity=0.064  Sum_probs=97.2

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008613           72 KMLKKQGNEL-YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---  147 (559)
Q Consensus        72 ~~lk~~Gn~~-~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---  147 (559)
                      ..++..+..+ ++.|+|++|+..|.+.+...|..+      +...+++.+|.+|+..|+|++|+..|.++++..|++   
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~------~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~  216 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST------YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA  216 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence            5677777776 678999999999999999988764      234589999999999999999999999999998875   


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008613          148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV  187 (559)
Q Consensus       148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~  187 (559)
                      +.+++.+|.+|..+|++++|+..|+++++.+|+...+...
T Consensus       217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A  256 (263)
T PRK10803        217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQA  256 (263)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence            7899999999999999999999999999999998765443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.94  E-value=3.1e-09  Score=83.93  Aligned_cols=65  Identities=28%  Similarity=0.388  Sum_probs=60.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613          118 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  182 (559)
Q Consensus       118 ~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~  182 (559)
                      +.+|..|++.|+|++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999975

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.93  E-value=2.8e-08  Score=105.30  Aligned_cols=143  Identities=15%  Similarity=0.034  Sum_probs=114.1

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613           55 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  134 (559)
Q Consensus        55 aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi  134 (559)
                      .+...+...++..+.....+..++..+.+.|+|++|++.|.+++...|....    .....++++++.+|.+.+++++|+
T Consensus       125 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~  200 (389)
T PRK11788        125 RAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR----VEIAHFYCELAQQALARGDLDAAR  200 (389)
T ss_pred             HHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHHHHhCCCHHHHH
Confidence            3334444444434445677888999999999999999999999988765432    123446788999999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhhcCC
Q 008613          135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-GTIADVLRDAKEILMKEDGH  201 (559)
Q Consensus       135 ~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~-~~a~~~L~~a~~~l~~~~~~  201 (559)
                      ..|+++++++|++..+++.+|.+|...|++++|+..|++++..+|.+ ..++..+..+....++.+.+
T Consensus       201 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A  268 (389)
T PRK11788        201 ALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG  268 (389)
T ss_pred             HHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999999999999876 45566677776666554443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.92  E-value=3.1e-09  Score=95.75  Aligned_cols=109  Identities=17%  Similarity=0.063  Sum_probs=96.9

Q ss_pred             HHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613           92 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL  171 (559)
Q Consensus        92 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dl  171 (559)
                      +.|.+++.+.|.+..         .++.++.+|+..|+|++|+..+++++.++|+++.+++++|.+|...|++++|+..|
T Consensus         4 ~~~~~~l~~~p~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~   74 (135)
T TIGR02552         4 ATLKDLLGLDSEQLE---------QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAY   74 (135)
T ss_pred             hhHHHHHcCChhhHH---------HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468899998887644         78899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          172 SNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       172 ekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      ++++.++|++...+..++.+....++.+.+...++.++
T Consensus        75 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  112 (135)
T TIGR02552        75 ALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAI  112 (135)
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999888877666554444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.92  E-value=7.1e-08  Score=102.25  Aligned_cols=126  Identities=16%  Similarity=0.082  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-VK  149 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~-~k  149 (559)
                      +..+...|..+++.|++++|+..|.++++..|....         +++.++.+|.+.|++++|++.++++++++|.+ ..
T Consensus       180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  250 (389)
T PRK11788        180 AHFYCELAQQALARGDLDAARALLKKALAADPQCVR---------ASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE  250 (389)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence            345677899999999999999999999999877644         88899999999999999999999999999987 46


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCcc
Q 008613          150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG  206 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~  206 (559)
                      ++..++.+|...|++++|+..+++++.++|+...+ ..+..+....++.+.+...++
T Consensus       251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~  306 (389)
T PRK11788        251 VLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLR  306 (389)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHH
Confidence            78899999999999999999999999999987554 666666666555544433333

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.92  E-value=1.9e-08  Score=108.54  Aligned_cols=203  Identities=14%  Similarity=0.052  Sum_probs=150.4

Q ss_pred             ChHHHHHHHHHHhcCCHHHHHHHHHHhhCCChHHHHHHHHH-HHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 008613            4 NPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELY   82 (559)
Q Consensus         4 ~pe~l~~A~e~mk~m~pedl~~a~e~l~~~~pee~~~~~~~-~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~   82 (559)
                      .|+-+++..+.|++..--...-++|..-.-+|+++++=.+- +....-+.--.+..-++..++..+.+-+++..++..|.
T Consensus       285 ~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt  364 (579)
T KOG1125|consen  285 HPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYT  364 (579)
T ss_pred             CCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence            46667777777777766555556665555677766542220 11111111122335556666677888888999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhcCCCCCc----------------------------------hhhhhHHHHHHHHHHHHHHcC
Q 008613           83 SEGRFSNALQKYLLAKKNLQGIHSS----------------------------------EGRTLLLACSLNSMSCYLKTK  128 (559)
Q Consensus        83 k~g~y~eAi~~Y~kAL~l~p~~~~~----------------------------------e~~~l~~~~~~nlA~~ylklg  128 (559)
                      .+|.-.+|++++.+=|...|.....                                  ........++..||.+|.-.+
T Consensus       365 Neg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~  444 (579)
T KOG1125|consen  365 NEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG  444 (579)
T ss_pred             hhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence            9998888988887777665432100                                  001133457778999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCcc
Q 008613          129 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG  206 (559)
Q Consensus       129 ~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~  206 (559)
                      +|++||.+|+.||..+|++...|.|+|.++.+-.+.+|||..|++||+|.|.+..++.+|+..+-.++.++++.+.+=
T Consensus       445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL  522 (579)
T KOG1125|consen  445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL  522 (579)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999888887776544433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.89  E-value=4.3e-08  Score=97.21  Aligned_cols=126  Identities=15%  Similarity=0.049  Sum_probs=114.8

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613           66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA  145 (559)
Q Consensus        66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP  145 (559)
                      +.......+..+|...++.|+|.+|+..+.++..+.|.+..         +|.-+|.||.+.|++++|-..|.+++++.|
T Consensus        95 ~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~---------~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~  165 (257)
T COG5010          95 AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE---------AWNLLGAALDQLGRFDEARRAYRQALELAP  165 (257)
T ss_pred             cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh---------hhhHHHHHHHHccChhHHHHHHHHHHHhcc
Confidence            34444666777999999999999999999999999999977         999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613          146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  200 (559)
Q Consensus       146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~  200 (559)
                      +++.++.++|..|.-.|+++.|...+.++...-+.+..+..+|..+....++...
T Consensus       166 ~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~  220 (257)
T COG5010         166 NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE  220 (257)
T ss_pred             CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence            9999999999999999999999999999998888899999999988777765443

>PLN02789 farnesyltranstransferase

Probab=98.87  E-value=7.3e-08  Score=100.68  Aligned_cols=131  Identities=10%  Similarity=-0.053  Sum_probs=113.0

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH
Q 008613           55 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRF--SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  132 (559)
Q Consensus        55 aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y--~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e  132 (559)
                      .+...+...+...++..+.|..++.++.+.+++  .+++.++.++|+.+|.+..         +|++++.++..+++|++
T Consensus        90 eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~---------AW~~R~w~l~~l~~~~e  160 (320)
T PLN02789         90 EELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH---------AWSHRQWVLRTLGGWED  160 (320)
T ss_pred             HHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHhhhHHH
Confidence            344555555556777778899999988888874  7889999999999998865         99999999999999999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          133 CIKVGSEVLAYDAKNVKALYRRGQAYKDI---GRL----EEAVSDLSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~l---g~~----eeAi~dlekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                      ++++|+++|++||.|..+|+.|+.++..+   +++    ++++.++.+++.++|+|..+|..++.+...
T Consensus       161 eL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~  229 (320)
T PLN02789        161 ELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD  229 (320)
T ss_pred             HHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence            99999999999999999999999999876   333    578888899999999999999999888754

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.87  E-value=6.3e-08  Score=86.64  Aligned_cols=104  Identities=18%  Similarity=0.200  Sum_probs=93.5

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      .++....+-.+|..+...|+.+.|++.|.++|.+.|..++         +|+|++++|.-.|+.++|++++++++++.-+
T Consensus        39 ~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raS---------ayNNRAQa~RLq~~~e~ALdDLn~AleLag~  109 (175)
T KOG4555|consen   39 AIKASRELELKAIALAEAGDLDGALELFGQALCLAPERAS---------AYNNRAQALRLQGDDEEALDDLNKALELAGD  109 (175)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchH---------hhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence            4455677778999999999999999999999999999876         9999999999999999999999999999665


Q ss_pred             C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613          147 N----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  179 (559)
Q Consensus       147 ~----~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P  179 (559)
                      .    -.+|..||..|..+|+.+.|..||+.+-++-.
T Consensus       110 ~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  110 QTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             cchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence            4    35799999999999999999999999987743

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.86  E-value=3.6e-08  Score=104.56  Aligned_cols=114  Identities=11%  Similarity=0.081  Sum_probs=98.5

Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 008613           23 LKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ  102 (559)
Q Consensus        23 l~~a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p  102 (559)
                      ...+.+.+...+.++....+.++....|..                  +..+..+|.+|+..|+|++|+..|.+++.++|
T Consensus         6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~------------------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P   67 (356)
T PLN03088          6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNN------------------AELYADRAQANIKLGNFTEAVADANKAIELDP   67 (356)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            344555666677777777777777777776                  78899999999999999999999999999999


Q ss_pred             CCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008613          103 GIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR  163 (559)
Q Consensus       103 ~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~  163 (559)
                      .++.         +|+++|.+|+.+|+|++|+.+|+++++++|++..++..++.+...+..
T Consensus        68 ~~~~---------a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         68 SLAK---------AYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             CCHH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            8765         899999999999999999999999999999999999999888777743

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.86  E-value=7.2e-08  Score=89.69  Aligned_cols=108  Identities=12%  Similarity=0.051  Sum_probs=91.3

Q ss_pred             HHHhcCC-HHHHHHHH----HHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCH
Q 008613           13 ENMKNMR-PEDLKCAA----EQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRF   87 (559)
Q Consensus        13 e~mk~m~-pedl~~a~----e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y   87 (559)
                      ..+.++. +|+|+.++    .....++.++......-+...+|+.                  +..|+.+|.++-..|+|
T Consensus        24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~------------------~~y~~gLG~~~Q~~g~~   85 (157)
T PRK15363         24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS------------------FDYWFRLGECCQAQKHW   85 (157)
T ss_pred             HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------------------HHHHHHHHHHHHHHhhH
Confidence            3456677 77777643    3556677777777777777776766                  99999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613           88 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  147 (559)
Q Consensus        88 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~  147 (559)
                      .+||..|.+|+.+.|++|.         .++|+|.||+.+|+.+.|.+.|+.||.+.-.+
T Consensus        86 ~~AI~aY~~A~~L~~ddp~---------~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363         86 GEAIYAYGRAAQIKIDAPQ---------APWAAAECYLACDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             HHHHHHHHHHHhcCCCCch---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence            9999999999999999988         99999999999999999999999999886433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.84  E-value=1.2e-07  Score=110.22  Aligned_cols=105  Identities=8%  Similarity=-0.035  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008613           72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL  151 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal  151 (559)
                      ..+..++..+...|++++|+..|.+++...|.++.         +++++|.++...|++++|++.++++++++|++..++
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~---------l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~  430 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG---------LRIDYASVLQARGWPRAAENELKKAEVLEPRNINLE  430 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Confidence            34556777777777777777777777777777654         777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008613          152 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA  185 (559)
Q Consensus       152 ~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~  185 (559)
                      +.+|.++..+++|++|...++++++.+|+++.+.
T Consensus       431 ~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~  464 (765)
T PRK10049        431 VEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ  464 (765)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            7777777777777777777777777777776543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.83  E-value=1.2e-07  Score=87.54  Aligned_cols=102  Identities=22%  Similarity=0.183  Sum_probs=85.9

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      ..........+|..++..|+|++|+..|.+++...++      ..+...+.++++.|++..|+|++|+..+.. +.-.+-
T Consensus        44 s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~  116 (145)
T PF09976_consen   44 SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPD------PELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAF  116 (145)
T ss_pred             ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcch
Confidence            3344777888999999999999999999999996533      234567899999999999999999999966 333444


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008613          147 NVKALYRRGQAYKDIGRLEEAVSDLSNAH  175 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl  175 (559)
                      .+.++..+|.+|...|++++|+..|++|+
T Consensus       117 ~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  117 KALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            57889999999999999999999999875

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.81  E-value=1.5e-07  Score=100.21  Aligned_cols=131  Identities=16%  Similarity=0.118  Sum_probs=95.5

Q ss_pred             HHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 008613           56 MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK  135 (559)
Q Consensus        56 a~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~  135 (559)
                      +..-++.-+...++++-.+-..+..+++.+++.+|++.|++++.+.|..+.         ++.++|.+|++.|++.+||.
T Consensus       325 A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~---------l~~~~a~all~~g~~~eai~  395 (484)
T COG4783         325 ALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPL---------LQLNLAQALLKGGKPQEAIR  395 (484)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH---------HHHHHHHHHHhcCChHHHHH
Confidence            334444444455556666777778888888888888888888888777654         77788888888888888888


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       136 ~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                      .....+.-+|+++..|..++++|..+|+..+|+..+-..+.+.-+...+...+..++++.
T Consensus       396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            888888888888888888888888888877777777777777766666666655555554

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.79  E-value=8.3e-08  Score=102.19  Aligned_cols=125  Identities=18%  Similarity=0.075  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613           68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  147 (559)
Q Consensus        68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~  147 (559)
                      +.....++..+..++..|++++|...++..+...|+++.         ++.-++.++++.+++.+|++.+.+++.++|+.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~---------~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~  373 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPY---------YLELAGDILLEANKAKEAIERLKKALALDPNS  373 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc
Confidence            345778888999999999999999999999999998864         77778999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 008613          148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  201 (559)
Q Consensus       148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~  201 (559)
                      +...+++|.+|...|++.+|+..+++.+.-+|+|+..|..|..++..+++..++
T Consensus       374 ~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a  427 (484)
T COG4783         374 PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA  427 (484)
T ss_pred             cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH
Confidence            999999999999999999999999999999999999999999999999766553

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.77  E-value=1.4e-08  Score=80.15  Aligned_cols=64  Identities=19%  Similarity=0.222  Sum_probs=58.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613           76 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  148 (559)
Q Consensus        76 ~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~  148 (559)
                      .+|..++..|+|++|+..|+++++..|.++.         +|+.+|.|+..+|+|++|+..|+++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPE---------AWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHH---------HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5799999999999999999999999888755         999999999999999999999999999999985

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.77  E-value=2.4e-07  Score=93.13  Aligned_cols=124  Identities=14%  Similarity=0.134  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--  147 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~--  147 (559)
                      .++.++..|..++..|+|++|++.|.+++...|..+      +...+.+++|.+|++.++|++|+..+++.+++.|++  
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~  104 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN  104 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence            366788899999999999999999999999877653      355678899999999999999999999999999987  


Q ss_pred             -HHHHHHHHHHHHHcCC------------------HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHhhc
Q 008613          148 -VKALYRRGQAYKDIGR------------------LEEAVSDLSNAHEVSPDD---GTIADVLRDAKEILMKED  199 (559)
Q Consensus       148 -~kal~~rG~A~~~lg~------------------~eeAi~dlekAl~l~P~~---~~a~~~L~~a~~~l~~~~  199 (559)
                       +.++|.+|.++..+++                  ..+|+..|++.+...|+.   +++...+..++.++.+++
T Consensus       105 ~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e  178 (243)
T PRK10866        105 IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE  178 (243)
T ss_pred             hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence             4689999999766641                  357889999999999987   467777777877776554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.76  E-value=2.8e-07  Score=90.03  Aligned_cols=123  Identities=16%  Similarity=0.213  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV-  148 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~-  148 (559)
                      .++.++..|..++..|+|.+|+..|++.+...|..+.      ...+.+.+|.+|++.++|.+|+..+++.++..|+++ 
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~   77 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK   77 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence            3678999999999999999999999999999887653      567899999999999999999999999999999874 


Q ss_pred             --HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHhh
Q 008613          149 --KALYRRGQAYKDIG-----------RLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEILMKE  198 (559)
Q Consensus       149 --kal~~rG~A~~~lg-----------~~eeAi~dlekAl~l~P~~~---~a~~~L~~a~~~l~~~  198 (559)
                        .++|.+|.++..+.           ...+|+..|+..+...|+.+   .+...+..+...+.++
T Consensus        78 ~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~  143 (203)
T PF13525_consen   78 ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH  143 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH
Confidence              68999999987654           34589999999999999874   5666677777777554

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.75  E-value=2.2e-07  Score=85.13  Aligned_cols=110  Identities=18%  Similarity=0.264  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV--  148 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~--  148 (559)
                      +..++..|...++.|+|.+|++.|.......|..+      +...+.+.++.+|++.++|++|+..+++-|+++|+++  
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~------ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE------YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence            56788999999999999999999999888766543      3456888999999999999999999999999999985  


Q ss_pred             -HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHHH
Q 008613          149 -KALYRRGQAYKDIGR---------------LEEAVSDLSNAHEVSPDDGTIAD  186 (559)
Q Consensus       149 -kal~~rG~A~~~lg~---------------~eeAi~dlekAl~l~P~~~~a~~  186 (559)
                       -++|.+|.++.....               ..+|+.+|++.+...|+++-+..
T Consensus        84 dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d  137 (142)
T PF13512_consen   84 DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD  137 (142)
T ss_pred             cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence             589999999999987               89999999999999999865543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.72  E-value=6.3e-08  Score=78.01  Aligned_cols=69  Identities=30%  Similarity=0.497  Sum_probs=64.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613          121 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR  189 (559)
Q Consensus       121 A~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~  189 (559)
                      ..+|+..++|++|++.+++++.++|+++..|+.+|.+|..+|+|++|+.+|+++++++|+++.+.....
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            568899999999999999999999999999999999999999999999999999999999987665443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.69  E-value=2.2e-08  Score=102.12  Aligned_cols=133  Identities=17%  Similarity=0.099  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k  149 (559)
                      ....+......+...++|+++...+.++....+...       ...+|+.+|.||.+.|++++|+.+|+++|+++|++..
T Consensus       109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~  181 (280)
T PF13429_consen  109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD-------SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD  181 (280)
T ss_dssp             ---------H-HHHTT-HHHHHHHHHHHHH-T---T--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH
T ss_pred             ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            456666777789999999999999999876432111       2448999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      ++..++.++...|+++++...++......|+++.++..++.+...+++.+.+...+++.+
T Consensus       182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~  241 (280)
T PF13429_consen  182 ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL  241 (280)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc
Confidence            999999999999999999999999888889998899999999999988777655555544

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.64  E-value=5e-07  Score=81.01  Aligned_cols=99  Identities=21%  Similarity=0.070  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CH
Q 008613           72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK---NV  148 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~---~~  148 (559)
                      ..+++.+.++-..|+.++|+.+|.+++......+      ....++.++|.+|..+|++++|+..+++++...|+   +.
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~------~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~   75 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA------DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNA   75 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccH
Confidence            4678899999999999999999999999644432      24558899999999999999999999999999888   78


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613          149 KALYRRGQAYKDIGRLEEAVSDLSNAHE  176 (559)
Q Consensus       149 kal~~rG~A~~~lg~~eeAi~dlekAl~  176 (559)
                      .....++.++..+|+++||+..+-.++.
T Consensus        76 ~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   76 ALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8888899999999999999999988775

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.64  E-value=7.3e-07  Score=101.19  Aligned_cols=170  Identities=17%  Similarity=0.140  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHhhCCChHHHHHHHH----HHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613           20 PEDLKCAAEQLTHTPPEEVAEIGE----KLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYL   95 (559)
Q Consensus        20 pedl~~a~e~l~~~~pee~~~~~~----~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~   95 (559)
                      ++...-+.+.....+|..+.++..    .+.....+-+.-+...+++.+..+...+..+.-+++.+|-.|+|..+..++.
T Consensus       215 ~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~  294 (1018)
T KOG2002|consen  215 SEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAE  294 (1018)
T ss_pred             hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHH
Confidence            344444555555556654443322    1222233334555566666666677778899999999999999999999999


Q ss_pred             HHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613           96 LAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-VKALYRRGQAYKDIGRLEEAVSDLSNA  174 (559)
Q Consensus        96 kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~-~kal~~rG~A~~~lg~~eeAi~dlekA  174 (559)
                      .++.....      ..+.+..+|++|.+|..+|+|++|..+|.++++.+|++ .-.++.+|+.|...|++++|+.+|+++
T Consensus       295 ~ai~~t~~------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv  368 (1018)
T KOG2002|consen  295 HAIKNTEN------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKV  368 (1018)
T ss_pred             HHHHhhhh------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHH
Confidence            99986433      33466679999999999999999999999999999998 888999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHH
Q 008613          175 HEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       175 l~l~P~~~~a~~~L~~a~~~l  195 (559)
                      ++..|++.+....|+-++...
T Consensus       369 ~k~~p~~~etm~iLG~Lya~~  389 (1018)
T KOG2002|consen  369 LKQLPNNYETMKILGCLYAHS  389 (1018)
T ss_pred             HHhCcchHHHHHHHHhHHHhh
Confidence            999999999888888876665

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.63  E-value=3.8e-07  Score=102.76  Aligned_cols=102  Identities=14%  Similarity=0.155  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      +..+..++|.+|.+|++++|...+.++|+.+|..+.         +|+.+|.||..+|+.++|+.....|-.++|.+...
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~---------ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~  209 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI---------AYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL  209 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh---------hHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH
Confidence            555566666666666666666666666666665544         55555555555555555555444444445544444


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  181 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~  181 (559)
                      |.+++.-...+|++++|+-+|.+|++.+|.+
T Consensus       210 W~~ladls~~~~~i~qA~~cy~rAI~~~p~n  240 (895)
T KOG2076|consen  210 WKRLADLSEQLGNINQARYCYSRAIQANPSN  240 (895)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcCCcc
Confidence            5555544445555555555555555544444

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.61  E-value=4e-07  Score=101.16  Aligned_cols=117  Identities=17%  Similarity=0.147  Sum_probs=104.4

Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHH--
Q 008613           58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK--  135 (559)
Q Consensus        58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~--  135 (559)
                      .+++......+--+..|+..|.++..+|++.+|.+.|..|+.++|+++.         +...+|.||++.|+..-|..  
T Consensus       671 ~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~---------s~~Ala~~lle~G~~~la~~~~  741 (799)
T KOG4162|consen  671 SCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP---------SMTALAELLLELGSPRLAEKRS  741 (799)
T ss_pred             HHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH---------HHHHHHHHHHHhCCcchHHHHH
Confidence            4444444445666888999999999999999999999999999999977         88899999999998888887  


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008613          136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  183 (559)
Q Consensus       136 ~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~  183 (559)
                      ....++++||.+.++||.+|.++..+|+.++|.++|..|+.+++.+|.
T Consensus       742 ~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  742 LLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            999999999999999999999999999999999999999999988764

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=1.8e-06  Score=85.35  Aligned_cols=128  Identities=14%  Similarity=0.059  Sum_probs=100.8

Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613           58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG  137 (559)
Q Consensus        58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~  137 (559)
                      ++++.++   +.-....+-+|..+-..|+|++|+++|...|+-+|.+..         +|-+.-.+...+|+--+||+..
T Consensus        76 ~~L~~~f---p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v---------~~KRKlAilka~GK~l~aIk~l  143 (289)
T KOG3060|consen   76 NQLRDRF---PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTV---------IRKRKLAILKAQGKNLEAIKEL  143 (289)
T ss_pred             HHHHHhC---CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhH---------HHHHHHHHHHHcCCcHHHHHHH
Confidence            4444443   444556677889999999999999999999998877643         5555566666778888888888


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       138 ~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                      ..-++..+.+..+|..++..|...|+|+.|+-+|+..+-+.|.++-...+++++..-++.
T Consensus       144 n~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg  203 (289)
T KOG3060|consen  144 NEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG  203 (289)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence            888888888888888888888888888888888888888888888888888887776654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.60  E-value=1e-06  Score=88.45  Aligned_cols=110  Identities=16%  Similarity=0.183  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---H
Q 008613           72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---V  148 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---~  148 (559)
                      +.+++.+-.+++.|+|.+|...|.+-|+.-|...      +...++|.||.|++.+|+|++|...|..+++-.|++   +
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~------~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp  215 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNST------YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAP  215 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc------ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCCh
Confidence            5589999999999999999999999999877654      345699999999999999999999999999988876   5


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008613          149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV  187 (559)
Q Consensus       149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~  187 (559)
                      .+++.+|.+...+|+.++|...|+++++..|+.+.+...
T Consensus       216 dallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A  254 (262)
T COG1729         216 DALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA  254 (262)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            789999999999999999999999999999998766543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.59  E-value=2.5e-07  Score=74.43  Aligned_cols=70  Identities=14%  Similarity=0.126  Sum_probs=64.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008613           78 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ  156 (559)
Q Consensus        78 Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~  156 (559)
                      ...|+..++|++|++++++++.++|.++.         +|+.+|.||.++|+|.+|+.+++++++++|+++.+...++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---------~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPE---------LWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccch---------hhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            46789999999999999999999999877         99999999999999999999999999999999887766543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.59  E-value=2.4e-07  Score=74.51  Aligned_cols=85  Identities=32%  Similarity=0.385  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                      +++++|.++...|++++|+..+.+++++.|.+..+++.+|.++...+++++|+..|++++.+.|.+..++..++.+....
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999988888888887777


Q ss_pred             HhhcC
Q 008613          196 MKEDG  200 (559)
Q Consensus       196 ~~~~~  200 (559)
                      ++...
T Consensus        82 ~~~~~   86 (100)
T cd00189          82 GKYEE   86 (100)
T ss_pred             HhHHH
Confidence            65543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.59  E-value=2.3e-07  Score=87.52  Aligned_cols=113  Identities=13%  Similarity=0.040  Sum_probs=94.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHH
Q 008613           78 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRR  154 (559)
Q Consensus        78 Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---~kal~~r  154 (559)
                      .+.+|-.+.|..+...+.+.++....       .....+|+++|.++...++|++|+..|++++.+.|+.   +.+|+++
T Consensus         6 ~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~l   78 (168)
T CHL00033          6 RNDNFIDKTFTIVADILLRILPTTSG-------EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNI   78 (168)
T ss_pred             ccccccccccccchhhhhHhccCCch-------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHH
Confidence            45566777788888888666543332       2356799999999999999999999999999997763   4589999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          155 GQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       155 G~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                      |.+|...|++++|+..|++++.++|.+...+..++.+...+++
T Consensus        79 g~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~  121 (168)
T CHL00033         79 GLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGE  121 (168)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhH
Confidence            9999999999999999999999999999988888888886654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.58  E-value=1.6e-07  Score=74.53  Aligned_cols=67  Identities=27%  Similarity=0.356  Sum_probs=61.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008613          124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  190 (559)
Q Consensus       124 ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~  190 (559)
                      +++.|+|++|+..|++++..+|++..+++.++.+|...|++++|...+++++..+|+++.++..+..
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            3578999999999999999999999999999999999999999999999999999999888776654

...

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.56  E-value=5e-07  Score=102.47  Aligned_cols=131  Identities=20%  Similarity=0.255  Sum_probs=111.8

Q ss_pred             HHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008613           60 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE  139 (559)
Q Consensus        60 l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~  139 (559)
                      ..+.++..+.+.-+-...|.++...|+|.+|++.|.++.+....+++         +|.|+|.||+.+|+|..||+.|+.
T Consensus       635 y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d---------v~lNlah~~~e~~qy~~AIqmYe~  705 (1018)
T KOG2002|consen  635 YGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED---------VWLNLAHCYVEQGQYRLAIQMYEN  705 (1018)
T ss_pred             HHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc---------eeeeHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555556666888899999999999999988877665655         899999999999999999999999


Q ss_pred             HHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 008613          140 VLAY--DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  199 (559)
Q Consensus       140 AL~l--dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~  199 (559)
                      +++.  ..+++..+..+|.+|+..+.|.+|...+.+|+.+.|.++.+..+++.+..++...-
T Consensus       706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~  767 (1018)
T KOG2002|consen  706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESI  767 (1018)
T ss_pred             HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHH
Confidence            9975  34679999999999999999999999999999999999999999999988886653

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.54  E-value=1.4e-07  Score=74.81  Aligned_cols=67  Identities=25%  Similarity=0.297  Sum_probs=60.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008613           81 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ  156 (559)
Q Consensus        81 ~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~  156 (559)
                      +++.|+|++|+..|.+++...|.+..         +++.++.||++.|++++|...+.+++..+|+++.++.-++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~---------~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPE---------ARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHH---------HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            46889999999999999999999865         89999999999999999999999999999999887776654

...

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.54  E-value=2.4e-06  Score=99.35  Aligned_cols=115  Identities=12%  Similarity=0.048  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      ...+...|..+...|+|++|++.|+++++.+|.++.         +++.++.+|...+++++|+..+.+++.++|++...
T Consensus       102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~---------~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~  172 (822)
T PRK14574        102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPD---------LISGMIMTQADAGRGGVVLKQATELAERDPTVQNY  172 (822)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence            555666688999999999999999999999999876         77788999999999999999999999999996554


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                       ..++.++...+++.+|+..|+++++++|++..+...+-.+...+
T Consensus       173 -l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~  216 (822)
T PRK14574        173 -MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRN  216 (822)
T ss_pred             -HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence             55566666688887899999999999999988877666654444

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.54  E-value=2.9e-06  Score=95.82  Aligned_cols=104  Identities=15%  Similarity=0.148  Sum_probs=100.0

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      .+.....|+.+|.+|-.+|+..+|+.....|-.++|.+.+         .|..++....++|.++.|+-+|++||.++|.
T Consensus       169 dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e---------~W~~ladls~~~~~i~qA~~cy~rAI~~~p~  239 (895)
T KOG2076|consen  169 DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE---------LWKRLADLSEQLGNINQARYCYSRAIQANPS  239 (895)
T ss_pred             CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH---------HHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence            4444999999999999999999999999999999999976         9999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613          147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  179 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P  179 (559)
                      +.+.+++|...|.+.|++..|...|.+.+.++|
T Consensus       240 n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  240 NWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999999999999

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.53  E-value=9.7e-07  Score=87.70  Aligned_cols=120  Identities=17%  Similarity=0.187  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      ... ....+.++-.|+-+.++.+..+++...+.+..         ++.-.+......|+|.+|+..+.++..++|+++++
T Consensus        67 ~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~---------ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~  136 (257)
T COG5010          67 LSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRE---------LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA  136 (257)
T ss_pred             HHH-HHHHHHHHhcccccchHHHHhhhhccCcccHH---------HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh
Confidence            444 66778888888888888888887776666643         55558899999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  200 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~  200 (559)
                      |.-+|.+|..+|++++|...|.+++++.|+++.+..+++.....-++.+.
T Consensus       137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~  186 (257)
T COG5010         137 WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLED  186 (257)
T ss_pred             hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHH
Confidence            99999999999999999999999999999999999999988776655443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.53  E-value=2.1e-06  Score=89.93  Aligned_cols=100  Identities=12%  Similarity=-0.032  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV--  148 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~--  148 (559)
                      ...+...|.++...|+|++|+..|++++++.|.++.         ++..++.+|...|++++|+..+.+++...|..+  
T Consensus       114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~---------~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~  184 (355)
T cd05804         114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW---------AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSML  184 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH---------HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcch
Confidence            445567888999999999999999999999999865         889999999999999999999999999887432  


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613          149 --KALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  179 (559)
Q Consensus       149 --kal~~rG~A~~~lg~~eeAi~dlekAl~l~P  179 (559)
                        ..|+.++.+|...|++++|+..|++++...|
T Consensus       185 ~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         185 RGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence              4577899999999999999999999987776

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.52  E-value=2.6e-07  Score=98.69  Aligned_cols=69  Identities=10%  Similarity=0.007  Sum_probs=64.1

Q ss_pred             hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613          109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA---LYRRGQAYKDIGRLEEAVSDLSNAHEV  177 (559)
Q Consensus       109 ~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka---l~~rG~A~~~lg~~eeAi~dlekAl~l  177 (559)
                      ...-....|+|+|.+|+++|+|++|+..|+++|+++|++..+   ||++|.+|..+|++++|+.+|++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            344466799999999999999999999999999999999865   999999999999999999999999997

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.49  E-value=6.8e-07  Score=77.81  Aligned_cols=94  Identities=18%  Similarity=0.174  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 008613          116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---GTIADVLR  189 (559)
Q Consensus       116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~---~~a~~~L~  189 (559)
                      .++.+|.++.+.|+|++|+..|.+++..+|++   +.+++.+|.++...+++++|+..|++++..+|++   ..++..++
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            78999999999999999999999999999887   6799999999999999999999999999999986   56777888


Q ss_pred             HHHHHHHhhcCCCCCccchh
Q 008613          190 DAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       190 ~a~~~l~~~~~~~~~~~~~i  209 (559)
                      .+...+++...+...+...+
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~  103 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVI  103 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHH
Confidence            88777766555444444333

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.48  E-value=2.3e-06  Score=99.52  Aligned_cols=130  Identities=13%  Similarity=0.028  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH
Q 008613           53 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  132 (559)
Q Consensus        53 ~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e  132 (559)
                      +..+...++..++..+..+..+......+...|++++|+.++++++  .|....       ...+..+|.+|...|+|++
T Consensus        50 ~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~-------~~~llalA~ly~~~gdyd~  120 (822)
T PRK14574         50 TAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNIS-------SRGLASAARAYRNEKRWDQ  120 (822)
T ss_pred             HHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCC-------HHHHHHHHHHHHHcCCHHH
Confidence            3344455555555444444333367777778899999999999999  444333       2244555889999999999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613          133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  192 (559)
Q Consensus       133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~  192 (559)
                      |++.|+++++++|+++.+++.++.+|...+++++|+..+++++.++|++... ..+..+.
T Consensus       121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~  179 (822)
T PRK14574        121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN  179 (822)
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence            9999999999999999999999999999999999999999999999986554 3334343

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.48  E-value=8.5e-07  Score=90.73  Aligned_cols=93  Identities=18%  Similarity=0.099  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613          117 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  196 (559)
Q Consensus       117 ~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~  196 (559)
                      +-.+|.-|+++|+|++||.+|.+++.++|.|+..|.+|+.+|+.+++|..|..||+.|+.++-.+..++.+...+.+.|+
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            34689999999999999999999999999999999999999999999999999999999999989999999999999998


Q ss_pred             hhcCCCCCccchh
Q 008613          197 KEDGHHGPRGLLI  209 (559)
Q Consensus       197 ~~~~~~~~~~~~i  209 (559)
                      ...++.+.++.++
T Consensus       180 ~~~EAKkD~E~vL  192 (536)
T KOG4648|consen  180 NNMEAKKDCETVL  192 (536)
T ss_pred             hHHHHHHhHHHHH
Confidence            8888877777776

>TIGR00540 hemY_coli hemY protein

Probab=98.47  E-value=2.7e-06  Score=91.94  Aligned_cols=133  Identities=14%  Similarity=-0.001  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613           69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  148 (559)
Q Consensus        69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~  148 (559)
                      +....+...+..+...|++++|++.+.++++..|++...       ....-+...++..++..++++.++++++.+|+++
T Consensus       261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~-------~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~  333 (409)
T TIGR00540       261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI-------SLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP  333 (409)
T ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc-------hhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh
Confidence            367888899999999999999999999999998887530       0112233444456889999999999999999999


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          149 --KALYRRGQAYKDIGRLEEAVSDLS--NAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       149 --kal~~rG~A~~~lg~~eeAi~dle--kAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                        ..+..+|.++...|+|++|.++|+  .+++.+|++.. ...++.+...+++..++..-+++.+
T Consensus       334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence              888899999999999999999999  68888998766 4589999998887776655555443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.47  E-value=9.1e-07  Score=72.29  Aligned_cols=73  Identities=18%  Similarity=0.225  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613           69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY  143 (559)
Q Consensus        69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l  143 (559)
                      ..+..+..+|.+|+..|+|++|+++|.+++++....+.  .....+.+++++|.||..+|++++|++.+++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34788999999999999999999999999998544433  34456889999999999999999999999999976

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.46  E-value=2.5e-06  Score=78.64  Aligned_cols=133  Identities=17%  Similarity=0.077  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613           68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  147 (559)
Q Consensus        68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~  147 (559)
                      ...+...+......+..+++..+...+.+.+.-.|..+      +...+++.+|.+++..|+|++|+..|..++...|+.
T Consensus         8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~------ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~   81 (145)
T PF09976_consen    8 AEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP------YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP   81 (145)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH
Confidence            33466677777777889999999998999988766652      355688899999999999999999999999987665


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccc
Q 008613          148 ---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL  207 (559)
Q Consensus       148 ---~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~  207 (559)
                         ..+.++++.++...|+|++|+..++.. .-.+-.+.++..++.+....++..++...|+.
T Consensus        82 ~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   82 ELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence               468999999999999999999999763 33334567888889998888777666555543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.46  E-value=3.3e-06  Score=92.75  Aligned_cols=145  Identities=18%  Similarity=0.125  Sum_probs=118.7

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD--  144 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld--  144 (559)
                      .+..+..++..|..|...++|.+|+..|.+||.+....-. +.+.-.+.++.|+|.+|.+.|+|++|..+|++|++|-  
T Consensus       237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G-~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~  315 (508)
T KOG1840|consen  237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG-EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK  315 (508)
T ss_pred             CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence            4445666778999999999999999999999998653321 2244578899999999999999999999999999862  


Q ss_pred             ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHHhhcCCCCCccchhh
Q 008613          145 ------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS-----PDD---GTIADVLRDAKEILMKEDGHHGPRGLLIE  210 (559)
Q Consensus       145 ------P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~-----P~~---~~a~~~L~~a~~~l~~~~~~~~~~~~~i~  210 (559)
                            |+-...+...+.++...+++++|+..|++++++.     +++   ..+...|+.+....++.+++..-++++|.
T Consensus       316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~  395 (508)
T KOG1840|consen  316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ  395 (508)
T ss_pred             hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence                  3345789999999999999999999999999974     233   56888899999999888887777777774


Q ss_pred             hh
Q 008613          211 EI  212 (559)
Q Consensus       211 e~  212 (559)
                      ..
T Consensus       396 ~~  397 (508)
T KOG1840|consen  396 IL  397 (508)
T ss_pred             HH
Confidence            43

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.43  E-value=2.1e-06  Score=81.43  Aligned_cols=88  Identities=15%  Similarity=0.131  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613          113 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR  189 (559)
Q Consensus       113 ~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~  189 (559)
                      ...+++++|.+|...|+|++|+.+|.+++++.|+.   ..+++.+|.+|..+|++++|+..|++++.++|++...+..++
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  113 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA  113 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            45689999999999999999999999999987764   579999999999999999999999999999999999988888


Q ss_pred             HHHHHHHhhcC
Q 008613          190 DAKEILMKEDG  200 (559)
Q Consensus       190 ~a~~~l~~~~~  200 (559)
                      .+...+++...
T Consensus       114 ~~~~~~g~~~~  124 (172)
T PRK02603        114 VIYHKRGEKAE  124 (172)
T ss_pred             HHHHHcCChHh
Confidence            88877765433

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=2.5e-07  Score=95.24  Aligned_cols=135  Identities=27%  Similarity=0.340  Sum_probs=118.3

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC----------chhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 008613           66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS----------SEGRTLLLACSLNSMSCYLKTKQYDECIK  135 (559)
Q Consensus        66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~----------~e~~~l~~~~~~nlA~~ylklg~y~eAi~  135 (559)
                      ......+..++.|+..++.++|..|+..|.+++++....+.          .....+...++.|++.|-++.+.|..|+.
T Consensus       217 ~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~  296 (372)
T KOG0546|consen  217 KALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARF  296 (372)
T ss_pred             hhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCccee
Confidence            35556788899999999999999999999999987663221          11345667789999999999999999999


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613          136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  200 (559)
Q Consensus       136 ~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~  200 (559)
                      .+..+++.++...++||+++.+|..+.++++|+.+++.+....|++..+...+..+...+.+..+
T Consensus       297 ~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~  361 (372)
T KOG0546|consen  297 RTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNR  361 (372)
T ss_pred             ccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988887766543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.43  E-value=1.3e-06  Score=82.71  Aligned_cols=99  Identities=21%  Similarity=0.184  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008613           87 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT----------KQYDECIKVGSEVLAYDAKNVKALYRRGQ  156 (559)
Q Consensus        87 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl----------g~y~eAi~~~~~AL~ldP~~~kal~~rG~  156 (559)
                      |+.|.+.|......+|.+++         .++|-|.+++++          .-+++||..|++||.|+|+...+++.+|.
T Consensus         7 FE~ark~aea~y~~nP~Dad---------nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGn   77 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDAD---------NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGN   77 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HH---------HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHH---------HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            67899999999999999865         677777777666          34678999999999999999999999999


Q ss_pred             HHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          157 AYKDIGR-----------LEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       157 A~~~lg~-----------~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                      +|..++.           |++|..+|++|+.++|++...+..|..+.+.
T Consensus        78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ka  126 (186)
T PF06552_consen   78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKA  126 (186)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTH
T ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence            9988864           8889999999999999999888888776543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.42  E-value=4.6e-07  Score=92.20  Aligned_cols=170  Identities=16%  Similarity=0.104  Sum_probs=117.6

Q ss_pred             CHHHHHHHHHHhhCCC-hHHHHHHHHHHHccCcHHHHHHH--HHHHHHhHHhHHHHHHHHH--------------HHHHH
Q 008613           19 RPEDLKCAAEQLTHTP-PEEVAEIGEKLANASPEEIATMR--ARIDAQMNYEFNAAKMLKK--------------QGNEL   81 (559)
Q Consensus        19 ~pedl~~a~e~l~~~~-pee~~~~~~~~~~~~pee~~aa~--~~l~~~~~~~~~~a~~lk~--------------~Gn~~   81 (559)
                      .||-+.-+.......+ |+-......+-..-.|.++.-..  .+.+.......+.++.++.              .|.-|
T Consensus       255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~y  334 (478)
T KOG1129|consen  255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGY  334 (478)
T ss_pred             chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecc
Confidence            3455555555444443 55555555555556677633222  2222222222222222222              23346


Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC-CHHHHHHHHHHH
Q 008613           82 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD--AK-NVKALYRRGQAY  158 (559)
Q Consensus        82 ~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld--P~-~~kal~~rG~A~  158 (559)
                      |-.++.+-|+.+|++.|+.--..|+         +++|+|.|.+-.++|+-++..+.+|+..-  |+ -+..||++|.+.
T Consensus       335 fY~~~PE~AlryYRRiLqmG~~spe---------Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~va  405 (478)
T KOG1129|consen  335 FYDNNPEMALRYYRRILQMGAQSPE---------LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVA  405 (478)
T ss_pred             ccCCChHHHHHHHHHHHHhcCCChH---------HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeE
Confidence            6667777777777777776655555         89999999999999999999999999763  33 468999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          159 KDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       159 ~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                      ...|++.-|..+|+-+|..+|+|.+++.+|+.+.-+-++
T Consensus       406 V~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~  444 (478)
T KOG1129|consen  406 VTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD  444 (478)
T ss_pred             EeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc
Confidence            999999999999999999999999999999888665543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.41  E-value=3.3e-06  Score=88.40  Aligned_cols=136  Identities=11%  Similarity=-0.051  Sum_probs=92.0

Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 008613           58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKN-LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKV  136 (559)
Q Consensus        58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l-~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~  136 (559)
                      ..++..+...+.....+.. +..++..+++..+...+.+++.. .+.++.      ...++..++.++...|+|++|+..
T Consensus        64 ~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~a~~~~~~G~~~~A~~~  136 (355)
T cd05804          64 ALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPD------YWYLLGMLAFGLEEAGQYDRAEEA  136 (355)
T ss_pred             HHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCC------cHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3333333333333444443 44555555554444444444432 122222      344677889999999999999999


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHhhcC
Q 008613          137 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT----IADVLRDAKEILMKEDG  200 (559)
Q Consensus       137 ~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~----a~~~L~~a~~~l~~~~~  200 (559)
                      |+++++++|+++.+++.+|.+|...|++++|+..|++++.+.|.++.    .+..+..+....++..+
T Consensus       137 ~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~  204 (355)
T cd05804         137 ARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA  204 (355)
T ss_pred             HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence            99999999999999999999999999999999999999999875432    23345555555544443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.40  E-value=1e-06  Score=94.21  Aligned_cols=72  Identities=18%  Similarity=0.163  Sum_probs=64.7

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD  144 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld  144 (559)
                      .+..+..+.++|..|++.|+|++|+..|+++|+++|++..      ...+|+|+|.||..+|++++|+.++.+||++.
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae------A~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE------AQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            4445899999999999999999999999999999999864      11369999999999999999999999999983

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.40  E-value=8.1e-07  Score=72.61  Aligned_cols=67  Identities=21%  Similarity=0.288  Sum_probs=58.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613          112 LLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS  178 (559)
Q Consensus       112 l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld-------P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~  178 (559)
                      ..+.+|.++|.+|..+|+|++|+..|++++++.       |.-+.+++++|.+|..+|++++|+..|++++++.
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            356799999999999999999999999999761       2236799999999999999999999999999863

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.38  E-value=5.3e-05  Score=76.26  Aligned_cols=150  Identities=11%  Similarity=-0.028  Sum_probs=111.5

Q ss_pred             HHHHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 008613           24 KCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG  103 (559)
Q Consensus        24 ~~a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~  103 (559)
                      ..+.+.+.+.+.++......++....|.               ..........+|.++++.++|.+|+..|++.+++.|+
T Consensus        37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~---------------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~  101 (243)
T PRK10866         37 ATAQQKLQDGNWKQAITQLEALDNRYPF---------------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT  101 (243)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCC---------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence            4455555555555555554444444433               3334566788999999999999999999999999999


Q ss_pred             CCCchhhhhHHHHHHHHHHHHHHcCC------------------HHHHHHHHHHHHHcCCCCH---H-------------
Q 008613          104 IHSSEGRTLLLACSLNSMSCYLKTKQ------------------YDECIKVGSEVLAYDAKNV---K-------------  149 (559)
Q Consensus       104 ~~~~e~~~l~~~~~~nlA~~ylklg~------------------y~eAi~~~~~AL~ldP~~~---k-------------  149 (559)
                      ++.      ...+++.+|.|+..+++                  -.+|+..+++.|+..|+..   .             
T Consensus       102 ~~~------~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la  175 (243)
T PRK10866        102 HPN------IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLA  175 (243)
T ss_pred             CCc------hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence            986      56789999999766541                  3578899999999999873   1             


Q ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          150 -ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       150 -al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                       --+..|.-|...|+|..|+.-++.+++..|+.+...+.|-.+.+.
T Consensus       176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~a  221 (243)
T PRK10866        176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENA  221 (243)
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence             123457778999999999999999999999876655555444333

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.38  E-value=1.6e-05  Score=88.24  Aligned_cols=128  Identities=10%  Similarity=0.029  Sum_probs=94.6

Q ss_pred             HccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--cCCCCCchhhhhHHH
Q 008613           46 ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG--------RFSNALQKYLLAKKN--LQGIHSSEGRTLLLA  115 (559)
Q Consensus        46 ~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g--------~y~eAi~~Y~kAL~l--~p~~~~~e~~~l~~~  115 (559)
                      ...+++++..+...++..++..+..+..+-.++.+++...        +...+.+...+++.+  ++.++         .
T Consensus       351 ~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~---------~  421 (517)
T PRK10153        351 NSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP---------R  421 (517)
T ss_pred             hcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh---------H
Confidence            3334555556666666666655555666655555554432        233445555555554  33332         3


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008613          116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  183 (559)
Q Consensus       116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~  183 (559)
                      +|.-+|..+...|++++|+..+++|+.++| ++.+|..+|.+|...|++++|+..|++|+.++|.++.
T Consensus       422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        422 IYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            788888899899999999999999999999 5889999999999999999999999999999999874

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.35  E-value=1.1e-05  Score=85.17  Aligned_cols=118  Identities=15%  Similarity=0.088  Sum_probs=104.9

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613           66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA  145 (559)
Q Consensus        66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP  145 (559)
                      ..+..+..+-.+|..|-+.|+-..|.++|-...+++|++.+         ..-.++..|+...-++++|.+++++--+.|
T Consensus       587 lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie---------~iewl~ayyidtqf~ekai~y~ekaaliqp  657 (840)
T KOG2003|consen  587 LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIE---------TIEWLAAYYIDTQFSEKAINYFEKAALIQP  657 (840)
T ss_pred             cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchH---------HHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence            34445788888999999999999999998888898888765         667889999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613          146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  192 (559)
Q Consensus       146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~  192 (559)
                      +..+-....+.|+...|+|..|+..|+......|.+.+.+..|-.+.
T Consensus       658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~  704 (840)
T KOG2003|consen  658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIA  704 (840)
T ss_pred             cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHh
Confidence            99999999999999999999999999999999999988777776653

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.34  E-value=8.5e-06  Score=90.22  Aligned_cols=144  Identities=15%  Similarity=0.116  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc-----------------------
Q 008613           51 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS-----------------------  107 (559)
Q Consensus        51 ee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~-----------------------  107 (559)
                      .++..+++.+.......++....+-.+|.++++.|++++|...|...|..+|++..+                       
T Consensus        18 g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~   97 (517)
T PF12569_consen   18 GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLL   97 (517)
T ss_pred             CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHH
Confidence            344556666766666777778888889999999999999999999988888854311                       


Q ss_pred             ----------------------------------------------------------------------h---------
Q 008613          108 ----------------------------------------------------------------------E---------  108 (559)
Q Consensus       108 ----------------------------------------------------------------------e---------  108 (559)
                                                                                            .         
T Consensus        98 ~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~  177 (517)
T PF12569_consen   98 ELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNG  177 (517)
T ss_pred             HHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccC
Confidence                                                                                  0         


Q ss_pred             -----------hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613          109 -----------GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  177 (559)
Q Consensus       109 -----------~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l  177 (559)
                                 .......+++.+|++|...|+|++|+.+++++|+..|+.+..|+.+|.+|...|++.+|..+++.|..+
T Consensus       178 ~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L  257 (517)
T PF12569_consen  178 SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAREL  257 (517)
T ss_pred             CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence                       011234577899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q 008613          178 SPDDGTIADVLRDAKEI  194 (559)
Q Consensus       178 ~P~~~~a~~~L~~a~~~  194 (559)
                      |+.|.-+-.......-+
T Consensus       258 D~~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  258 DLADRYINSKCAKYLLR  274 (517)
T ss_pred             ChhhHHHHHHHHHHHHH
Confidence            99887665544444333

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.33  E-value=2.9e-06  Score=98.30  Aligned_cols=146  Identities=10%  Similarity=0.017  Sum_probs=106.0

Q ss_pred             hCCChHHHHHHHHHHHcc-CcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchh
Q 008613           31 THTPPEEVAEIGEKLANA-SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG  109 (559)
Q Consensus        31 ~~~~pee~~~~~~~~~~~-~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~  109 (559)
                      .+.+|....+...-+... ...++..+..-....+.+.+.....++-.|..++..+++.++...  .++...+.......
T Consensus        24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~  101 (906)
T PRK14720         24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI  101 (906)
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence            455565554444433333 334455566666666777777788888888888888888888777  77777666654444


Q ss_pred             hhhHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613          110 RTLLL----------ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  179 (559)
Q Consensus       110 ~~l~~----------~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P  179 (559)
                      -...+          .+++.+|.||-++|++++|+..|+++|+++|+|+.++.++|..|... ++++|+..+.+|+...-
T Consensus       102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i  180 (906)
T PRK14720        102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI  180 (906)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence            44444          67788888888888888888888888888888888888888888888 88888888888888743

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.31  E-value=1.5e-05  Score=81.38  Aligned_cols=127  Identities=18%  Similarity=0.107  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k  149 (559)
                      ...++..+-+.|-..++|.+||+.-.+...+.+..-    .-..+.+|+.+|..++...+++.|+..+.+|+..+|++++
T Consensus       140 a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~----~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR  215 (389)
T COG2956         140 AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY----RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR  215 (389)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc----hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee
Confidence            456677788889999999999999888888765542    3457789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhhcC
Q 008613          150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-GTIADVLRDAKEILMKEDG  200 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~-~~a~~~L~~a~~~l~~~~~  200 (559)
                      +-..+|.++...|+|+.|++.|+.+++.+|+. +++...|..++..+++..+
T Consensus       216 Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~  267 (389)
T COG2956         216 ASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE  267 (389)
T ss_pred             hhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence            99999999999999999999999999999987 5788888888888876544

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.31  E-value=7.2e-07  Score=98.72  Aligned_cols=119  Identities=13%  Similarity=0.016  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      +.+.+..|+..+..++|.++.++++..++++|-...         .||++|.|+++++++..|+.+|.+.+.++|++..+
T Consensus       485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~---------~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~ea  555 (777)
T KOG1128|consen  485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG---------TWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEA  555 (777)
T ss_pred             HHHHHhhccccccchhHHHHHHHHHHHhhcCccchh---------HHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhh
Confidence            445556677778889999999999999999888876         99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  198 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~  198 (559)
                      |.++..+|..+++-.+|...+.+|++-+-++-.+|.+.-.+...++..
T Consensus       556 WnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~  603 (777)
T KOG1128|consen  556 WNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEF  603 (777)
T ss_pred             hhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccH
Confidence            999999999999999999999999998877766666655554444433

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.30  E-value=2.2e-06  Score=83.02  Aligned_cols=114  Identities=20%  Similarity=0.087  Sum_probs=103.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      ....+..++++|+.|-.-|-+.-|.--|+++|.+.|..|+         +++-+|..+...|+|+.|.+.|+.++++||.
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~---------vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~  131 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE---------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPT  131 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH---------HHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence            3345888999999999999999999999999999999877         8999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHH
Q 008613          147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT--IADVLR  189 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~--a~~~L~  189 (559)
                      +--++.+||.+++.-|+|.-|.+++.+-..-||+|+-  .|-.|.
T Consensus       132 y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~  176 (297)
T COG4785         132 YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN  176 (297)
T ss_pred             chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence            9999999999999999999999999999999999863  444443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.28  E-value=5.9e-06  Score=90.61  Aligned_cols=142  Identities=16%  Similarity=0.079  Sum_probs=99.9

Q ss_pred             cHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCC
Q 008613           50 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ  129 (559)
Q Consensus        50 pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~  129 (559)
                      ..++..-..-++.-+...++..+.+--+|-.+...|+-++|..+...+++.++..+-         ||.-+|.++...++
T Consensus        20 ~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v---------CwHv~gl~~R~dK~   90 (700)
T KOG1156|consen   20 TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV---------CWHVLGLLQRSDKK   90 (700)
T ss_pred             HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccch---------hHHHHHHHHhhhhh
Confidence            344455555555555666666777777777777777777777777777776666554         77777777777777


Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613          130 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  200 (559)
Q Consensus       130 y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~  200 (559)
                      |++||++|+.|+.++|+|...|+-++.....+++|+-.+....+.+++.|....-|..+..+...++.+..
T Consensus        91 Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~  161 (700)
T KOG1156|consen   91 YDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM  161 (700)
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777776666666666666655443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.27  E-value=9e-06  Score=94.30  Aligned_cols=134  Identities=16%  Similarity=0.098  Sum_probs=106.6

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc---------hhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 008613           66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS---------EGRTLLLACSLNSMSCYLKTKQYDECIKV  136 (559)
Q Consensus        66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~---------e~~~l~~~~~~nlA~~ylklg~y~eAi~~  136 (559)
                      |.+.....+..+...+...++|++|+..+..+++..|.....         ....+...++.++......-.+| .++++
T Consensus        26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~  104 (906)
T PRK14720         26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEH  104 (906)
T ss_pred             CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHH
Confidence            455558999999999999999999999999999999987542         11122223333555556566677 77777


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 008613          137 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  201 (559)
Q Consensus       137 ~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~  201 (559)
                      +...+...+.+-.+++.+|.||..+|++++|...|+++++++|+|+.+.+.++...... +.+++
T Consensus       105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA  168 (906)
T PRK14720        105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA  168 (906)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence            77777778999999999999999999999999999999999999999999988876655 44443

>PRK11906 transcriptional regulator; Provisional

Probab=98.27  E-value=1.6e-05  Score=85.33  Aligned_cols=133  Identities=11%  Similarity=-0.078  Sum_probs=107.2

Q ss_pred             HHHHHHccCcHHHHHHHHHHHHHh---HHhHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCCCCCch
Q 008613           41 IGEKLANASPEEIATMRARIDAQM---NYEFNAAKMLKKQGNELYSE---------GRFSNALQKYLLAKKNLQGIHSSE  108 (559)
Q Consensus        41 ~~~~~~~~~pee~~aa~~~l~~~~---~~~~~~a~~lk~~Gn~~~k~---------g~y~eAi~~Y~kAL~l~p~~~~~e  108 (559)
                      ..+.+....|+.+.++..-+....   .-.+..+..+.-.+.|++..         ..-.+|+++-.+|+++++.++.  
T Consensus       262 g~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~--  339 (458)
T PRK11906        262 GKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGK--  339 (458)
T ss_pred             HHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHH--
Confidence            333455556666666665555555   44444566666666665543         3456788999999999999976  


Q ss_pred             hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613          109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  182 (559)
Q Consensus       109 ~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~  182 (559)
                             ++..+|.++...++++.|+..+++|+.++|+.+.+||.+|.++...|+.++|+..++++++++|.-.
T Consensus       340 -------a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        340 -------ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             -------HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence                   9999999999999999999999999999999999999999999999999999999999999999753

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=6e-06  Score=86.43  Aligned_cols=143  Identities=14%  Similarity=0.078  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH-
Q 008613           54 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE-  132 (559)
Q Consensus        54 ~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e-  132 (559)
                      ..+++-..+.++......+.+.-+|+.+...++..+|+-.|+.|..+.|..-+         ||..+-.||+..|++.+ 
T Consensus       317 ~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~---------~Y~GL~hsYLA~~~~kEA  387 (564)
T KOG1174|consen  317 ERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE---------IYRGLFHSYLAQKRFKEA  387 (564)
T ss_pred             HHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH---------HHHHHHHHHHhhchHHHH
Confidence            34455566666667777889999999999999999999999999999888654         88888888888777766 


Q ss_pred             -----------------------------------HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613          133 -----------------------------------CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  177 (559)
Q Consensus       133 -----------------------------------Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l  177 (559)
                                                         |..+++++|+++|.+.++...++..+..-|++++++..++++|..
T Consensus       388 ~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~  467 (564)
T KOG1174|consen  388 NALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII  467 (564)
T ss_pred             HHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence                                               555666666778888888888889999999999999999999988


Q ss_pred             CCCCHHHHHHHHHHHHHHHhhcCCCCCcc
Q 008613          178 SPDDGTIADVLRDAKEILMKEDGHHGPRG  206 (559)
Q Consensus       178 ~P~~~~a~~~L~~a~~~l~~~~~~~~~~~  206 (559)
                      .|++ ..+..|+.+.......+++...|.
T Consensus       468 ~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~  495 (564)
T KOG1174|consen  468 FPDV-NLHNHLGDIMRAQNEPQKAMEYYY  495 (564)
T ss_pred             cccc-HHHHHHHHHHHHhhhHHHHHHHHH
Confidence            8876 355666666555544444333333

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.26  E-value=3.8e-06  Score=85.43  Aligned_cols=100  Identities=11%  Similarity=0.041  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 008613          114 LACSLNSMSCY-LKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---GTIAD  186 (559)
Q Consensus       114 ~~~~~nlA~~y-lklg~y~eAi~~~~~AL~ldP~~---~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~---~~a~~  186 (559)
                      ...+|+.+.++ ++.|+|++|+..|...++..|++   +.++|++|.+|+..|+|++|+..|++++..+|++   ++++.
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            35788888886 67899999999999999999998   5899999999999999999999999999999986   56666


Q ss_pred             HHHHHHHHHHhhcCCCCCccchhhhhc
Q 008613          187 VLRDAKEILMKEDGHHGPRGLLIEEIT  213 (559)
Q Consensus       187 ~L~~a~~~l~~~~~~~~~~~~~i~e~~  213 (559)
                      .++.+...+++...+...++.+++...
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP  248 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYP  248 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            677788777777777777776665443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.26  E-value=4.3e-05  Score=78.48  Aligned_cols=112  Identities=20%  Similarity=0.199  Sum_probs=90.3

Q ss_pred             hHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613           67 EFNAAKMLKKQGNELYSE-GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA  145 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~-g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP  145 (559)
                      ....+..+...|..|... +++++|+++|.+|+++......   ......|+.++|.++.++++|++|+..|++++...-
T Consensus       110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l  186 (282)
T PF14938_consen  110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL  186 (282)
T ss_dssp             HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence            344688899999999999 9999999999999998665542   344567999999999999999999999999987532


Q ss_pred             C------CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613          146 K------NV-KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  181 (559)
Q Consensus       146 ~------~~-kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~  181 (559)
                      +      ++ ..++..+.+++..|++..|...|++...++|..
T Consensus       187 ~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  187 ENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             CHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             cccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            2      23 356788899999999999999999999999865

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.26  E-value=4.4e-05  Score=75.76  Aligned_cols=131  Identities=13%  Similarity=0.058  Sum_probs=110.4

Q ss_pred             HHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 008613           57 RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKV  136 (559)
Q Consensus        57 ~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~  136 (559)
                      .+-+..-+...+.....++.+-..+..+|+--+||+...+.++.++.+++         +|..++.+|+..++|++|+-+
T Consensus       106 ~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~E---------AW~eLaeiY~~~~~f~kA~fC  176 (289)
T KOG3060|consen  106 IEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQE---------AWHELAEIYLSEGDFEKAAFC  176 (289)
T ss_pred             HHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHH---------HHHHHHHHHHhHhHHHHHHHH
Confidence            34444444455555666777777788889999999999999999999987         999999999999999999999


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613          137 GSEVLAYDAKNVKALYRRGQAYKDIGR---LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  196 (559)
Q Consensus       137 ~~~AL~ldP~~~kal~~rG~A~~~lg~---~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~  196 (559)
                      +++++-+.|.++-++.++|.+++..|.   ++-|.++|+++++++|.+...+..|-.+...+.
T Consensus       177 lEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la  239 (289)
T KOG3060|consen  177 LEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA  239 (289)
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence            999999999999999999999998874   667999999999999988777776666555554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.24  E-value=9e-06  Score=89.40  Aligned_cols=134  Identities=18%  Similarity=0.139  Sum_probs=107.2

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Q 008613           66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-  144 (559)
Q Consensus        66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld-  144 (559)
                      ..+..+..+.+++..|++.|+|++|..+|.+|+++..... .....-....+.+++.++...++|++|+.++.+++++- 
T Consensus       278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~-~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~  356 (508)
T KOG1840|consen  278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL-GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL  356 (508)
T ss_pred             CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            3556788899999999999999999999999999876622 12344567789999999999999999999999999862 


Q ss_pred             ----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHhhcC
Q 008613          145 ----A---KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS--------PDDGTIADVLRDAKEILMKEDG  200 (559)
Q Consensus       145 ----P---~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~--------P~~~~a~~~L~~a~~~l~~~~~  200 (559)
                          +   .-++.+.++|..|+..|+|+||...|++|+.+.        +........++....+.++...
T Consensus       357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~  427 (508)
T KOG1840|consen  357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE  427 (508)
T ss_pred             hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence                2   336899999999999999999999999999874        1223455566666666655444

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.24  E-value=0.0001  Score=72.06  Aligned_cols=151  Identities=19%  Similarity=0.127  Sum_probs=106.9

Q ss_pred             HHHHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 008613           24 KCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG  103 (559)
Q Consensus        24 ~~a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~  103 (559)
                      ..+...+...+.++......++....|.               ..-..+.+...|.++++.|+|.+|+..|.+.+...|.
T Consensus        10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---------------s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~   74 (203)
T PF13525_consen   10 QKALEALQQGDYEEAIKLFEKLIDRYPN---------------SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN   74 (203)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHH-TT---------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCC---------------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            3444555556666655555544443332               2334677888999999999999999999999999999


Q ss_pred             CCCchhhhhHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCHH-----------------HHHHHH
Q 008613          104 IHSSEGRTLLLACSLNSMSCYLKTK-----------QYDECIKVGSEVLAYDAKNVK-----------------ALYRRG  155 (559)
Q Consensus       104 ~~~~e~~~l~~~~~~nlA~~ylklg-----------~y~eAi~~~~~AL~ldP~~~k-----------------al~~rG  155 (559)
                      ++.      ...+++.+|.|++++.           ...+|+..|+..++..|++..                 --+..|
T Consensus        75 ~~~------~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia  148 (203)
T PF13525_consen   75 SPK------ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA  148 (203)
T ss_dssp             -TT------HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Ccc------hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            875      5668888888877653           346899999999999998731                 234468


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH---HHHHHHH
Q 008613          156 QAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL---RDAKEIL  195 (559)
Q Consensus       156 ~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L---~~a~~~l  195 (559)
                      .-|...|.|..|+..++.+++..|+.+.+...+   .++...+
T Consensus       149 ~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l  191 (203)
T PF13525_consen  149 RFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKL  191 (203)
T ss_dssp             HHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence            889999999999999999999999986654444   4444444

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=2.9e-05  Score=78.93  Aligned_cols=100  Identities=12%  Similarity=-0.005  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC---
Q 008613           87 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR---  163 (559)
Q Consensus        87 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~---  163 (559)
                      .++-+...+..|..+|.+..         -|.-+|.+|+.++++..|+..|.+|+++.|+|+..+.-.|.+++...+   
T Consensus       138 ~~~l~a~Le~~L~~nP~d~e---------gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~  208 (287)
T COG4235         138 MEALIARLETHLQQNPGDAE---------GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQM  208 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCch---------hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcc
Confidence            45567778888888888876         788999999999999999999999999999999999999988875543   


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          164 LEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       164 ~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                      ..++...|++++.+||+|..+...|.......
T Consensus       209 ta~a~~ll~~al~~D~~~iral~lLA~~afe~  240 (287)
T COG4235         209 TAKARALLRQALALDPANIRALSLLAFAAFEQ  240 (287)
T ss_pred             cHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Confidence            57788999999999999998888887775553

>TIGR00540 hemY_coli hemY protein

Probab=98.23  E-value=6.7e-05  Score=81.09  Aligned_cols=120  Identities=13%  Similarity=0.041  Sum_probs=96.2

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613           55 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  134 (559)
Q Consensus        55 aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi  134 (559)
                      .+.+.+....+..+.....+...|..+...|++++|..+|.++.+..|...-        .+...++.+++..|+|+.|+
T Consensus       102 ~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l--------~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540       102 KAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI--------LVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch--------HHHHHHHHHHHHCCCHHHHH
Confidence            3333333333333333566778899999999999999999999988776531        14445689999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613          135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  182 (559)
Q Consensus       135 ~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~  182 (559)
                      ..+++.++..|+++.++..++.+|...|+|++|+..+++.++....++
T Consensus       174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~  221 (409)
T TIGR00540       174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD  221 (409)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence            999999999999999999999999999999999999999998754443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.22  E-value=1.5e-05  Score=85.86  Aligned_cols=130  Identities=20%  Similarity=0.064  Sum_probs=105.1

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      ....+..+...+..+...|++++|.....++++. +.++.         +..-.+.  +..+++++++..+++.++..|+
T Consensus       259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~---------l~~l~~~--l~~~~~~~al~~~e~~lk~~P~  326 (398)
T PRK10747        259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDER---------LVLLIPR--LKTNNPEQLEKVLRQQIKQHGD  326 (398)
T ss_pred             HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHH---------HHHHHhh--ccCCChHHHHHHHHHHHhhCCC
Confidence            3445778888999999999999999999999984 43432         2222222  3459999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      ++..++.+|.++...++|++|...|++++++.|++.. +..+..+....++.+++..-|++.+
T Consensus       327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999754 4578888888877766555555443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=9.1e-06  Score=88.01  Aligned_cols=188  Identities=12%  Similarity=-0.022  Sum_probs=149.7

Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613           58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG  137 (559)
Q Consensus        58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~  137 (559)
                      .-.+.-.+..+..+-.|+..|.-|+-.|+|.+|-.+|.|+..++|....         +|...|..|--.++.+.|+..|
T Consensus       299 ~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp---------aWl~fghsfa~e~EhdQAmaaY  369 (611)
T KOG1173|consen  299 LLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP---------AWLAFGHSFAGEGEHDQAMAAY  369 (611)
T ss_pred             HHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH---------HHHHHhHHhhhcchHHHHHHHH
Confidence            3444555567777899999999999999999999999999999999876         9999999999999999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchhhhhchhhh
Q 008613          138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVG  217 (559)
Q Consensus       138 ~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i~e~~e~~~  217 (559)
                      ..|-++-|..-.-.+.+|.=|...++++-|-..|..|+.+.|.|+-+...++-+....+...++...+..+++.+.+-..
T Consensus       370 ~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~  449 (611)
T KOG1173|consen  370 FTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN  449 (611)
T ss_pred             HHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc
Confidence            99999999999999999999999999999999999999999999999999999888777776665555555411111100


Q ss_pred             ccCCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHHHHcCC
Q 008613          218 AVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNAN  279 (559)
Q Consensus       218 ~~~~~~~~~s~~~~~~~e~~~s~~~~~~~~~~~~~~~~~~l~~l~~~PEai~~~~~~i~~~d  279 (559)
                      +..                       ...  ......-+....+++|.|+|.-|+..|...+
T Consensus       450 e~~-----------------------~w~--p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~  486 (611)
T KOG1173|consen  450 EKI-----------------------FWE--PTLNNLGHAYRKLNKYEEAIDYYQKALLLSP  486 (611)
T ss_pred             ccc-----------------------chh--HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence            000                       000  0011233455567889999999999998543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=9.2e-06  Score=85.34  Aligned_cols=100  Identities=11%  Similarity=-0.036  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      ...+.+++.|+.+.++|.+|+..++++|.+.|.+.-         ++|++|.||+.+++|+.|+.+|.+|++++|.|-.+
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K---------ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~  327 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK---------ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAA  327 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh---------HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHH
Confidence            556788999999999999999999999999998854         99999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHcCCHHHH-HHHHHHHHHhCC
Q 008613          151 LYRRGQAYKDIGRLEEA-VSDLSNAHEVSP  179 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeA-i~dlekAl~l~P  179 (559)
                      ..-+..+.....++++. .+.|.+.+...+
T Consensus       328 ~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  328 RAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            87787777777776654 667777766544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.18  E-value=3.4e-06  Score=90.40  Aligned_cols=117  Identities=19%  Similarity=0.113  Sum_probs=102.2

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 008613           66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK---QYDECIKVGSEVLA  142 (559)
Q Consensus        66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg---~y~eAi~~~~~AL~  142 (559)
                      ..+..++.++..||..|-.+....||..|.+++...|...         .+|.|++.++++.+   +.-.|+.+|..|++
T Consensus       369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~---------~~l~nraa~lmkRkW~~d~~~AlrDch~Alr  439 (758)
T KOG1310|consen  369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAI---------YLLENRAAALMKRKWRGDSYLALRDCHVALR  439 (758)
T ss_pred             hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchh---------HHHHhHHHHHHhhhccccHHHHHHhHHhhcc
Confidence            4566799999999999999999999999999999877754         49999999999864   77889999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613          143 YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  191 (559)
Q Consensus       143 ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a  191 (559)
                      ++|...++|++++.++..++++.+|+.+...+....|.+......+.-+
T Consensus       440 ln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l  488 (758)
T KOG1310|consen  440 LNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCL  488 (758)
T ss_pred             CChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhcc
Confidence            9999999999999999999999999999998888888776554444333

>PRK15331 chaperone protein SicA; Provisional

Probab=98.16  E-value=4.5e-05  Score=71.54  Aligned_cols=116  Identities=11%  Similarity=0.030  Sum_probs=86.5

Q ss_pred             HhcCCHHHHHHH----HHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHH
Q 008613           15 MKNMRPEDLKCA----AEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNA   90 (559)
Q Consensus        15 mk~m~pedl~~a----~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eA   90 (559)
                      +.+.++++|..+    .+....++.++......-+.-.++.+                  .+.+..+|.++...++|.+|
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n------------------~~Y~~GLaa~~Q~~k~y~~A   90 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN------------------PDYTMGLAAVCQLKKQFQKA   90 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc------------------HHHHHHHHHHHHHHHHHHHH
Confidence            344455555442    33445555555555555555545554                  88999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008613           91 LQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK  159 (559)
Q Consensus        91 i~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~  159 (559)
                      +..|..|..+.+++|.         ..+..|.||+.+|+...|...|..++. .|.+ ..+..++.+++
T Consensus        91 i~~Y~~A~~l~~~dp~---------p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~-~~l~~~A~~~L  148 (165)
T PRK15331         91 CDLYAVAFTLLKNDYR---------PVFFTGQCQLLMRKAAKARQCFELVNE-RTED-ESLRAKALVYL  148 (165)
T ss_pred             HHHHHHHHHcccCCCC---------ccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch-HHHHHHHHHHH
Confidence            9999999999999987         789999999999999999999999998 4553 33444444444

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.15  E-value=5.8e-05  Score=66.68  Aligned_cols=104  Identities=21%  Similarity=0.334  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch---hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------
Q 008613           74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE---GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-------  143 (559)
Q Consensus        74 lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e---~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l-------  143 (559)
                      ....|...+..|-|.+|...|++|.+.....|..+   ...+.+.|+..|+.++..+|+|++++....++|.+       
T Consensus        12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL   91 (144)
T PF12968_consen   12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL   91 (144)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence            34466778889999999999999999998887654   45667789999999999999999999999999865       


Q ss_pred             CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613          144 DAK----NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  177 (559)
Q Consensus       144 dP~----~~kal~~rG~A~~~lg~~eeAi~dlekAl~l  177 (559)
                      +.+    +..+.++|+.++..+|+.++|+..|+.+.+.
T Consensus        92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            332    4678999999999999999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.14  E-value=3.5e-05  Score=84.64  Aligned_cols=120  Identities=14%  Similarity=0.055  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008613           72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL  151 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal  151 (559)
                      ..++......|..++|...+......|.-.|.+++         .+.-.|..+..+|+-++|...++.+++.|+.+..+|
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge---------slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCw   78 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE---------SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCW   78 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch---------hHHhccchhhcccchHHHHHHHHHHhccCcccchhH
Confidence            45666777788888999999999988888888876         566778888888999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613          152 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  200 (559)
Q Consensus       152 ~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~  200 (559)
                      +.+|..+..-++|++|+++|+.|+.++|+|..++.-|..++-.+++.++
T Consensus        79 Hv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~  127 (700)
T KOG1156|consen   79 HVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEG  127 (700)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999888888888888777654

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.13  E-value=2.2e-06  Score=88.02  Aligned_cols=79  Identities=16%  Similarity=0.204  Sum_probs=67.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613          122 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  200 (559)
Q Consensus       122 ~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~  200 (559)
                      .-.+..|.++.||++|+.+|+++|..+..|-.|+.+++.|+++..|+.||..+++++|+...-+...+.++..++....
T Consensus       122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~  200 (377)
T KOG1308|consen  122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE  200 (377)
T ss_pred             HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence            3445668899999999999999999999999999999999999999999999999999987666666666666655544

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=1e-05  Score=84.80  Aligned_cols=132  Identities=14%  Similarity=0.142  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc---------------hhhhhH----------HHHHHHHHH
Q 008613           68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS---------------EGRTLL----------LACSLNSMS  122 (559)
Q Consensus        68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~---------------e~~~l~----------~~~~~nlA~  122 (559)
                      +.+...+-..|.+++..|+|.+|+..|.++.-++|.....               ....+.          ..-|+--+.
T Consensus       229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~  308 (564)
T KOG1174|consen  229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ  308 (564)
T ss_pred             CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh
Confidence            3457778889999999999999999999999998875431               111111          122344455


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 008613          123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  199 (559)
Q Consensus       123 ~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~  199 (559)
                      ..+..++|+.|+.+..++|.++|++..+|...|.++..+++.++|+-.|+.|..+.|.+-.++..|-..+-..++.+
T Consensus       309 ~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k  385 (564)
T KOG1174|consen  309 LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK  385 (564)
T ss_pred             hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence            66678999999999999999999999999999999999999999999999999999998888877766655554443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.11  E-value=6e-06  Score=79.20  Aligned_cols=97  Identities=19%  Similarity=0.141  Sum_probs=83.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613          119 NSMSCYLKTKQYDECIKVGSEVLAYDAKN-----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  193 (559)
Q Consensus       119 nlA~~ylklg~y~eAi~~~~~AL~ldP~~-----~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~  193 (559)
                      .-|.-+++-|+|++|...|..||.+.|.-     ...|.+||.|+..++.|+.||.++.++++|.|.+..++.+...++.
T Consensus       100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye  179 (271)
T KOG4234|consen  100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE  179 (271)
T ss_pred             HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence            34667788999999999999999999975     3589999999999999999999999999999999999998899999


Q ss_pred             HHHhhcCCCCCccchhhhhchhh
Q 008613          194 ILMKEDGHHGPRGLLIEEITEEV  216 (559)
Q Consensus       194 ~l~~~~~~~~~~~~~i~e~~e~~  216 (559)
                      .+..++.+...|++++ +..++.
T Consensus       180 k~ek~eealeDyKki~-E~dPs~  201 (271)
T KOG4234|consen  180 KMEKYEEALEDYKKIL-ESDPSR  201 (271)
T ss_pred             hhhhHHHHHHHHHHHH-HhCcch
Confidence            9888777777777665 444443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.10  E-value=1.4e-05  Score=89.18  Aligned_cols=124  Identities=17%  Similarity=0.014  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      -..|...+..+.+.+.-++|.-+..++-.++|..+.         .|+-+|.++...|++.+|...|..|+.+||+++..
T Consensus       650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~---------~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s  720 (799)
T KOG4162|consen  650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSAS---------VYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS  720 (799)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHH---------HHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH
Confidence            344556777888888888898899999998777654         99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCC
Q 008613          151 LYRRGQAYKDIGRLEEAVS--DLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHG  203 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~--dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~  203 (559)
                      ..-+|.+|...|+-.-|..  .+..+++++|.+.++|..|+.+.+.+++.+.+..
T Consensus       721 ~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae  775 (799)
T KOG4162|consen  721 MTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE  775 (799)
T ss_pred             HHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence            9999999999999888887  9999999999999999999999999987665433

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.10  E-value=1.6e-05  Score=81.14  Aligned_cols=119  Identities=10%  Similarity=-0.070  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      ++.+..+..+|.+..+...|+..|.+.++..|.+..         .+...+.+|..++++++|+++|..+++++|.|+++
T Consensus       256 ~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT---------~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEa  326 (478)
T KOG1129|consen  256 PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT---------YLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEA  326 (478)
T ss_pred             hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh---------hhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcccee
Confidence            566666667777777777777777777776666533         56666777777777777777777777777777777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  198 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~  198 (559)
                      +--.|..|+.-++.|-|+.+|++.|.+--.+++...+|+.+.....+.
T Consensus       327 iAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~  374 (478)
T KOG1129|consen  327 IACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI  374 (478)
T ss_pred             eeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch
Confidence            777777777777777777777777777666677777777665554433

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.09  E-value=1.1e-05  Score=91.95  Aligned_cols=152  Identities=14%  Similarity=0.031  Sum_probs=122.0

Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc---------------------------hhh
Q 008613           58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS---------------------------EGR  110 (559)
Q Consensus        58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~---------------------------e~~  110 (559)
                      ..+.+.++..+.-+..+--+|..|..--+...|..+|.+|.++++.+...                           ...
T Consensus       479 ~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a  558 (1238)
T KOG1127|consen  479 HALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPA  558 (1238)
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH
Confidence            45555555666677888889999888888899999999999998876542                           012


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008613          111 TLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  190 (559)
Q Consensus       111 ~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~  190 (559)
                      ......|..||..|++.+++..||.+++.+++.+|.+..+|.-+|.+|..-|+|.-|++.|.++..++|.+.-.......
T Consensus       559 ~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~  638 (1238)
T KOG1127|consen  559 FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAV  638 (1238)
T ss_pred             HHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHH
Confidence            23344577799999999999999999999999999999999999999999999999999999999999998776666666


Q ss_pred             HHHHHHhhcCCCCCccchh
Q 008613          191 AKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       191 a~~~l~~~~~~~~~~~~~i  209 (559)
                      .+...++++++....+..|
T Consensus       639 ~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  639 MECDNGKYKEALDALGLII  657 (1238)
T ss_pred             HHHHhhhHHHHHHHHHHHH
Confidence            6666666665444444444

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.07  E-value=0.00026  Score=76.33  Aligned_cols=107  Identities=12%  Similarity=0.041  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008613           72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL  151 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal  151 (559)
                      -.+...+...+..|+++.|..+|.++.+..|+...        ......+.+++..|+|++|+..++++++.+|+++.++
T Consensus       119 l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~--------~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al  190 (398)
T PRK10747        119 VNYLLAAEAAQQRGDEARANQHLERAAELADNDQL--------PVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVL  190 (398)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchH--------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence            33444566669999999999999999988776531        1333458899999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008613          152 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD  186 (559)
Q Consensus       152 ~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~  186 (559)
                      ..++.+|...|+|++|+..+.+..+..+.++....
T Consensus       191 ~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~  225 (398)
T PRK10747        191 RLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRA  225 (398)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH
Confidence            99999999999999999999999888776555433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.07  E-value=0.00066  Score=69.67  Aligned_cols=107  Identities=15%  Similarity=0.150  Sum_probs=99.1

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613           66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA  145 (559)
Q Consensus        66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP  145 (559)
                      +.+..++.+-+++..+....+++.|+..+.+|++.+|.+..         +-.-+|.+++..|+|+.|++.++.+++-||
T Consensus       175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR---------Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~  245 (389)
T COG2956         175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR---------ASIILGRVELAKGDYQKAVEALERVLEQNP  245 (389)
T ss_pred             chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee---------hhhhhhHHHHhccchHHHHHHHHHHHHhCh
Confidence            67778999999999999999999999999999999999865         666899999999999999999999999999


Q ss_pred             CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613          146 KN-VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  181 (559)
Q Consensus       146 ~~-~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~  181 (559)
                      ++ +.++-.+-.||..+|+.++.+..+.++.+..++.
T Consensus       246 ~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~  282 (389)
T COG2956         246 EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA  282 (389)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence            98 5788899999999999999999999999988765

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.05  E-value=3.3e-05  Score=85.91  Aligned_cols=129  Identities=11%  Similarity=-0.041  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q 008613           71 AKMLKKQGNELYSEGR---FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK--------QYDECIKVGSE  139 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~---y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg--------~y~eAi~~~~~  139 (559)
                      +-.++.+|..++.+++   +..|+.+|.+|++++|++..         +|..++.||....        ++..+.....+
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~---------a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTY---------AQAEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            5556677877776655   88999999999999999854         6666677665542        34456666667


Q ss_pred             HHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          140 VLAY--DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       140 AL~l--dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      ++.+  +|..+.+|.-+|..+...|++++|...|++|+.++|+ ..++..++.+....++.+++...+.+++
T Consensus       410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~  480 (517)
T PRK10153        410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAF  480 (517)
T ss_pred             hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            6664  7888899999999999999999999999999999994 6789999999988887776655555544

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.04  E-value=4e-05  Score=68.74  Aligned_cols=85  Identities=21%  Similarity=0.181  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 008613          116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD---DGTIADVLR  189 (559)
Q Consensus       116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~---~~~a~~~L~  189 (559)
                      ++|++|.+|-.+|+.++||..|++++......   ..++..+|.+|..+|++++|+..+++++...|+   +..+...+.
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            78999999999999999999999999976544   679999999999999999999999999999898   666666666


Q ss_pred             HHHHHHHhhcC
Q 008613          190 DAKEILMKEDG  200 (559)
Q Consensus       190 ~a~~~l~~~~~  200 (559)
                      .+...+++.++
T Consensus        83 l~L~~~gr~~e   93 (120)
T PF12688_consen   83 LALYNLGRPKE   93 (120)
T ss_pred             HHHHHCCCHHH
Confidence            66666655544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.00  E-value=0.00018  Score=79.32  Aligned_cols=136  Identities=13%  Similarity=0.056  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHH
Q 008613           52 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  131 (559)
Q Consensus        52 e~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~  131 (559)
                      ++.++..-++..+++.+..-+.|...-...+....|++|-.+|.++-...+..          .+|+.-+.....+++.+
T Consensus       599 dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe----------Rv~mKs~~~er~ld~~e  668 (913)
T KOG0495|consen  599 DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE----------RVWMKSANLERYLDNVE  668 (913)
T ss_pred             CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc----------hhhHHHhHHHHHhhhHH
Confidence            34555666677777777777777777777777778888888887777654443          27788888888899999


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          132 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       132 eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                      +|++.|+++|+..|++.+.|..+|+++...++.+.|...|...++++|+..-.|-.|..+.++.+.
T Consensus       669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~  734 (913)
T KOG0495|consen  669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ  734 (913)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999988888777643

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.98  E-value=0.0003  Score=64.51  Aligned_cols=107  Identities=19%  Similarity=0.146  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc-------------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS-------------EGRTLLLACSLNSMSCYLKTKQYDECIKVG  137 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~-------------e~~~l~~~~~~nlA~~ylklg~y~eAi~~~  137 (559)
                      ...+...|......++...++..|.+++.+...+.-.             ........++..++.++...|+|++|+..|
T Consensus         6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~   85 (146)
T PF03704_consen    6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL   85 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            4555667777888899999999999999887654321             244566778888999999999999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613          138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  177 (559)
Q Consensus       138 ~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l  177 (559)
                      .+++.++|-+..+|..+-.+|...|++.+|+..|+++...
T Consensus        86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.97  E-value=1.8e-05  Score=65.73  Aligned_cols=61  Identities=18%  Similarity=0.235  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV  140 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~A  140 (559)
                      ....+..+|.++++.|+|.+|+..+++ +.+.+.+.         .+++-+|.||+++|+|++|+..+.++
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~---------~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP---------DIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH---------HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH---------HHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            466788899999999999999999999 76666543         37778899999999999999999875

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.96  E-value=7.5e-05  Score=80.08  Aligned_cols=95  Identities=13%  Similarity=0.140  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008613           74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR  153 (559)
Q Consensus        74 lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~  153 (559)
                      ....+.+++..++..+|+..+.++|...|.+..         ++.-.+..+++.++|+.|+..+.+++++.|.+.++|+.
T Consensus       203 ~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~---------LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~  273 (395)
T PF09295_consen  203 AVLLARVYLLMNEEVEAIRLLNEALKENPQDSE---------LLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQ  273 (395)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            334666677777777888888888877666633         66667777778888888888888888888888888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Q 008613          154 RGQAYKDIGRLEEAVSDLSNAHEV  177 (559)
Q Consensus       154 rG~A~~~lg~~eeAi~dlekAl~l  177 (559)
                      ++.+|..+|+|++|+..++.+--+
T Consensus       274 La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  274 LAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             HHHHHHhcCCHHHHHHHHhcCcCC
Confidence            888888888888888776644433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.93  E-value=9.4e-05  Score=75.94  Aligned_cols=112  Identities=17%  Similarity=0.215  Sum_probs=86.2

Q ss_pred             hHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 008613           64 MNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-KQYDECIKVGSEVLA  142 (559)
Q Consensus        64 ~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl-g~y~eAi~~~~~AL~  142 (559)
                      .......+..+...+++|.+. ++.+|+++|.+|+.+.-....   ....+.++.++|.+|... +++++|++.|.+|++
T Consensus        68 ~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~---~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~  143 (282)
T PF14938_consen   68 LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR---FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAE  143 (282)
T ss_dssp             TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT----HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344556677777767666555 999999999999998654432   344577999999999998 999999999999998


Q ss_pred             cCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613          143 YDAK--N----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  179 (559)
Q Consensus       143 ldP~--~----~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P  179 (559)
                      +.-.  .    ..++...|.++..+++|++|+..|++.....-
T Consensus       144 ~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l  186 (282)
T PF14938_consen  144 LYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL  186 (282)
T ss_dssp             HHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred             HHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence            7321  1    46788999999999999999999999988653

>PRK11906 transcriptional regulator; Provisional

Probab=97.92  E-value=3.6e-05  Score=82.64  Aligned_cols=117  Identities=11%  Similarity=-0.058  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHH---HhcCCCCCchhhhhHHHHHHHHHHHHHHc---------CCHHHHHHHHH
Q 008613           74 LKKQGNELYSEGR---FSNALQKYLLAK---KNLQGIHSSEGRTLLLACSLNSMSCYLKT---------KQYDECIKVGS  138 (559)
Q Consensus        74 lk~~Gn~~~k~g~---y~eAi~~Y~kAL---~l~p~~~~~e~~~l~~~~~~nlA~~ylkl---------g~y~eAi~~~~  138 (559)
                      ++-.|...+.++.   ...|+.+|.+|+   .++|...         .+|.-++.||...         ....+|++..+
T Consensus       258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a---------~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~  328 (458)
T PRK11906        258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKT---------ECYCLLAECHMSLALHGKSELELAAQKALELLD  328 (458)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccH---------HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            3445555544333   467888999999   7766664         4888888888765         24567889999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 008613          139 EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  199 (559)
Q Consensus       139 ~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~  199 (559)
                      +|++++|.++.++..+|.++...++++.|+..|++|+.++|+...++...+.+..--++.+
T Consensus       329 rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~  389 (458)
T PRK11906        329 YVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE  389 (458)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999999999999999999999999999999988888765555443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.89  E-value=0.00041  Score=69.39  Aligned_cols=123  Identities=14%  Similarity=0.142  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV--  148 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~--  148 (559)
                      +..|+++|...++.|+|++|++.|.+.....|..+-      ...+.+.++.++++.++|++|+...++-+++.|+++  
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence            788999999999999999999999999887666553      356788999999999999999999999999999874  


Q ss_pred             -HHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHhhc
Q 008613          149 -KALYRRGQAYKDIGR--------LEEAVSDLSNAHEVSPDD---GTIADVLRDAKEILMKED  199 (559)
Q Consensus       149 -kal~~rG~A~~~lg~--------~eeAi~dlekAl~l~P~~---~~a~~~L~~a~~~l~~~~  199 (559)
                       -++|.+|.++...-+        -.+|+..|+..+...|+.   +.+...+..+...+..++
T Consensus       108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E  170 (254)
T COG4105         108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE  170 (254)
T ss_pred             hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence             578899999865422        456899999999999986   456667777777766554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.88  E-value=0.00011  Score=81.96  Aligned_cols=120  Identities=9%  Similarity=0.073  Sum_probs=112.3

Q ss_pred             cHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCC
Q 008613           50 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ  129 (559)
Q Consensus        50 pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~  129 (559)
                      ..++..+..+++..+.-++-....|+..|-++++.+++..|+++|.+++.+.|++..         .|.|++.+|.++++
T Consensus       498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~e---------aWnNls~ayi~~~~  568 (777)
T KOG1128|consen  498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAE---------AWNNLSTAYIRLKK  568 (777)
T ss_pred             chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchh---------hhhhhhHHHHHHhh
Confidence            356677888888888888888999999999999999999999999999999999876         99999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613          130 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS  178 (559)
Q Consensus       130 y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~  178 (559)
                      -.+|-..+.+|++.+-.+++.|-|.-.+....|.|++|+..|.+.+.+.
T Consensus       569 k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  569 KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             hHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999998864

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.87  E-value=0.00024  Score=73.38  Aligned_cols=103  Identities=17%  Similarity=0.193  Sum_probs=75.2

Q ss_pred             HHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008613           75 KKQGNELYSEG--RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  152 (559)
Q Consensus        75 k~~Gn~~~k~g--~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~  152 (559)
                      ...+.+.+..|  +|.+|.-.|.+..+..+..         ..+++.++.|++.+|+|++|...+.+++..+|+++.++.
T Consensus       169 La~awv~l~~g~e~~~~A~y~f~El~~~~~~t---------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La  239 (290)
T PF04733_consen  169 LAEAWVNLATGGEKYQDAFYIFEELSDKFGST---------PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA  239 (290)
T ss_dssp             HHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S---------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHhccCCC---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence            33444444444  6899999999866543333         336778899999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHH
Q 008613          153 RRGQAYKDIGRL-EEAVSDLSNAHEVSPDDGTIAD  186 (559)
Q Consensus       153 ~rG~A~~~lg~~-eeAi~dlekAl~l~P~~~~a~~  186 (559)
                      ++..+...+|+. +.+.+.+......+|+|+-+..
T Consensus       240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~  274 (290)
T PF04733_consen  240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKD  274 (290)
T ss_dssp             HHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence            999999999988 5566677777778898876543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.80  E-value=0.00025  Score=76.03  Aligned_cols=110  Identities=16%  Similarity=0.100  Sum_probs=99.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008613           80 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK  159 (559)
Q Consensus        80 ~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~  159 (559)
                      .+...++|+.|+..|.+.....|.            +..-++.+|+..++..+|++...++|+.+|.+...+...+..+.
T Consensus       178 ~l~~t~~~~~ai~lle~L~~~~pe------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl  245 (395)
T PF09295_consen  178 YLSLTQRYDEAIELLEKLRERDPE------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL  245 (395)
T ss_pred             HHhhcccHHHHHHHHHHHHhcCCc------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            344568899999999998876543            55678999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 008613          160 DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  201 (559)
Q Consensus       160 ~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~  201 (559)
                      ..++++.|+..+++++.+.|++...|..|..++-.+++.+.+
T Consensus       246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~A  287 (395)
T PF09295_consen  246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENA  287 (395)
T ss_pred             hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence            999999999999999999999999999999999998887653

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.80  E-value=7.4e-05  Score=75.18  Aligned_cols=97  Identities=15%  Similarity=0.088  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 008613          117 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---GTIADVLRD  190 (559)
Q Consensus       117 ~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~---~~a~~~L~~  190 (559)
                      +|+.|.-+++.|+|..|...|..-|+..|+.   +.++|++|.+++..|+|++|...|..+++-.|++   ++....|+.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7899999999999999999999999999987   5899999999999999999999999999998876   567778888


Q ss_pred             HHHHHHhhcCCCCCccchhhhhc
Q 008613          191 AKEILMKEDGHHGPRGLLIEEIT  213 (559)
Q Consensus       191 a~~~l~~~~~~~~~~~~~i~e~~  213 (559)
                      +..++++...+..-++.+|+++.
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP  246 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYP  246 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCC
Confidence            88888877776666666665443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.78  E-value=0.00041  Score=63.75  Aligned_cols=85  Identities=9%  Similarity=0.067  Sum_probs=72.4

Q ss_pred             HHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCC----------
Q 008613           60 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ----------  129 (559)
Q Consensus        60 l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~----------  129 (559)
                      ++....+..-..++...++.+||+.++|.+|+..|.+-|++.|.++.      ...+++.+|.+++.+..          
T Consensus        36 L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~------vdYa~Y~~gL~~~~~~~~~~~~~~~~d  109 (142)
T PF13512_consen   36 LDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN------VDYAYYMRGLSYYEQDEGSLQSFFRSD  109 (142)
T ss_pred             HHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC------ccHHHHHHHHHHHHHhhhHHhhhcccc
Confidence            33333344455777888999999999999999999999999999986      56799999999999987          


Q ss_pred             -----HHHHHHHHHHHHHcCCCCHHH
Q 008613          130 -----YDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus       130 -----y~eAi~~~~~AL~ldP~~~ka  150 (559)
                           ...|+.++.++|+..|++.-+
T Consensus       110 rD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen  110 RDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             cCcHHHHHHHHHHHHHHHHCcCChhH
Confidence                 899999999999999998543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.73  E-value=4.7e-05  Score=52.04  Aligned_cols=31  Identities=19%  Similarity=0.342  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613          116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus       116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      +|+++|.||..+++|++|+.+|+++|+++|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            5566666666666666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.73  E-value=0.00033  Score=73.61  Aligned_cols=126  Identities=21%  Similarity=0.195  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD------  144 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld------  144 (559)
                      -.++-++||++.-.|+|+.|+++|.+++.+.-...+   +..-+...|-+|..|.-+++|++||.+..+-|.|-      
T Consensus       235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~---r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dr  311 (639)
T KOG1130|consen  235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN---RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDR  311 (639)
T ss_pred             HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc---hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345678999999999999999999999887555443   44556678889999999999999999998877653      


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHHHhhc
Q 008613          145 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS-----PD-DGTIADVLRDAKEILMKED  199 (559)
Q Consensus       145 P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~-----P~-~~~a~~~L~~a~~~l~~~~  199 (559)
                      -...++++-+|.+|..+|.++.|+...+..+++.     +. ...+..+|..+...++...
T Consensus       312 iGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d  372 (639)
T KOG1130|consen  312 IGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQED  372 (639)
T ss_pred             hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence            2357899999999999999999998888877653     22 2345556666666665443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.71  E-value=6e-05  Score=51.50  Aligned_cols=34  Identities=38%  Similarity=0.628  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613          148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  181 (559)
Q Consensus       148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~  181 (559)
                      +++|+++|.+|..++++++|+.+|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            5789999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.71  E-value=0.00026  Score=81.14  Aligned_cols=114  Identities=13%  Similarity=0.077  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k  149 (559)
                      ....|...|-.|.+.+++..||..|+.+++.+|.+.+         +|..+|.+|...|+|..|++.|+++..++|.+.-
T Consensus       561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n---------~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y  631 (1238)
T KOG1127|consen  561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYN---------LWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY  631 (1238)
T ss_pred             HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHH---------HHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence            3455666999999999999999999999999999866         9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613          150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  192 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~  192 (559)
                      +.|..+.....+|+|.+|+..+...+............+.+..
T Consensus       632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~  674 (1238)
T KOG1127|consen  632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESV  674 (1238)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            9999999999999999999999998887665555555554443

>PRK10941 hypothetical protein; Provisional

Probab=97.70  E-value=0.00036  Score=71.18  Aligned_cols=79  Identities=19%  Similarity=0.259  Sum_probs=73.6

Q ss_pred             hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008613          108 EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD  186 (559)
Q Consensus       108 e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~  186 (559)
                      ....+....+.|+-.+|.+.++|+.|+.+++.++.++|+++.-+.-||.+|..+|.+..|+.||+..++.+|+++.+..
T Consensus       175 ~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~  253 (269)
T PRK10941        175 DNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM  253 (269)
T ss_pred             CHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence            3567788899999999999999999999999999999999999999999999999999999999999999999987543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.67  E-value=9.5e-05  Score=53.96  Aligned_cols=39  Identities=23%  Similarity=0.181  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008613          117 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG  155 (559)
Q Consensus       117 ~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG  155 (559)
                      |+.+|.+|..+|++++|++.|+++|+.+|+++.+++.+|
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            444455555555555555555555555555555444444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.65  E-value=5.3e-05  Score=52.38  Aligned_cols=34  Identities=21%  Similarity=0.333  Sum_probs=31.7

Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008613          136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS  169 (559)
Q Consensus       136 ~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~  169 (559)
                      .|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3789999999999999999999999999999963

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.65  E-value=0.00086  Score=73.38  Aligned_cols=128  Identities=17%  Similarity=0.211  Sum_probs=97.7

Q ss_pred             HHHHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 008613           24 KCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG  103 (559)
Q Consensus        24 ~~a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~  103 (559)
                      -.+....++++.++......++...-|++                  ...++-+-.++.+.++|++|+..    ++..+.
T Consensus        17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd------------------~~a~~cKvValIq~~ky~~ALk~----ikk~~~   74 (652)
T KOG2376|consen   17 TDLNRHGKNGEYEEAVKTANKILSIVPDD------------------EDAIRCKVVALIQLDKYEDALKL----IKKNGA   74 (652)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHhcCCCc------------------HhhHhhhHhhhhhhhHHHHHHHH----HHhcch
Confidence            34444555666667766777777776666                  77788888889999999999843    333332


Q ss_pred             CCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613          104 IHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  182 (559)
Q Consensus       104 ~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~  182 (559)
                      +..      .....+..+.|++++++.++|+.+++   .+++...+.+..+|++++.+++|++|++.|+..++.+-++.
T Consensus        75 ~~~------~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~  144 (652)
T KOG2376|consen   75 LLV------INSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ  144 (652)
T ss_pred             hhh------cchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence            111      11133789999999999999999998   56888899999999999999999999999999988776553

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.00013  Score=71.86  Aligned_cols=76  Identities=14%  Similarity=0.095  Sum_probs=68.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          119 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       119 nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                      --|.+|+.-++|..||..|.++|.++|..+.+|-+|+.+|+.+++|+....|++++++++|+....+..|+.....
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~   90 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ   90 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence            3466777888999999999999999999999999999999999999999999999999999988887777766444

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.62  E-value=0.00038  Score=62.79  Aligned_cols=62  Identities=24%  Similarity=0.281  Sum_probs=57.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008613          119 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  180 (559)
Q Consensus       119 nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~  180 (559)
                      ..|.+.-..|+.+.|++.|.++|.+.|.++.+|.+|+++|.-.|+.++|++|+++++++.-+
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~  109 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD  109 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence            45677778899999999999999999999999999999999999999999999999999754

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.61  E-value=0.00015  Score=52.97  Aligned_cols=43  Identities=28%  Similarity=0.346  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008613          148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  190 (559)
Q Consensus       148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~  190 (559)
                      +.+++.+|.+|..+|++++|++.|+++++.+|+|+.++..++.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            3578999999999999999999999999999999999988865

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.55  E-value=0.00098  Score=63.67  Aligned_cols=103  Identities=15%  Similarity=0.187  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNL-QGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--  146 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~-p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~--  146 (559)
                      ..+..+.+|+.+...|+|.||..+|.+++.-. -.+         ...+..++.+.+..+++..|....+.+.+.+|.  
T Consensus        88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d---------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r  158 (251)
T COG4700          88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD---------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR  158 (251)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC---------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence            36667789999999999999999999998632 222         348889999999999999999999999999986  


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613          147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  181 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~  181 (559)
                      .+..++..|.+|...|++++|...|+-++...|+-
T Consensus       159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~  193 (251)
T COG4700         159 SPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP  193 (251)
T ss_pred             CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence            57889999999999999999999999999988764

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.54  E-value=0.0002  Score=48.57  Aligned_cols=32  Identities=41%  Similarity=0.667  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008613          149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  180 (559)
Q Consensus       149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~  180 (559)
                      ++|+.+|.+|..+|+|++|+.+|++++.++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34445555555555555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.51  E-value=0.00085  Score=70.81  Aligned_cols=107  Identities=13%  Similarity=0.216  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC--------C-chhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIH--------S-SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL  141 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~--------~-~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL  141 (559)
                      .+.....+-.+|++++|..|+-.|..+|+++..-.        . .+...+...+...+..||+++++.+.|+....+.|
T Consensus       176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI  255 (569)
T PF15015_consen  176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI  255 (569)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence            33444566677777888888888888877765321        1 13455666777889999999999999999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613          142 AYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  177 (559)
Q Consensus       142 ~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l  177 (559)
                      -++|-+..-|++++.++..|.+|.+|...+--+.-+
T Consensus       256 ~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym  291 (569)
T PF15015_consen  256 NLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM  291 (569)
T ss_pred             hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888777554

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.49  E-value=0.0017  Score=65.93  Aligned_cols=153  Identities=11%  Similarity=0.092  Sum_probs=110.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008613           81 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD  160 (559)
Q Consensus        81 ~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~  160 (559)
                      +.+..+|.+||++..--.+..|....         .+.-+|.||+...+|..|..+|++...+.|...++.+..++.+++
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~rA---------gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~   90 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRSRA---------GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK   90 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccchH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence            47788999999998888887775533         678899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchhhhhchhhhccCCCCCCCCchhhhhhhcCCCC
Q 008613          161 IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLAREKADPS  240 (559)
Q Consensus       161 lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i~e~~e~~~~~~~~~~~~s~~~~~~~e~~~s~  240 (559)
                      .+.+.+|+.......    +++..++..-.++..++-.++...-.+..++....+.                    .   
T Consensus        91 A~i~ADALrV~~~~~----D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en--------------------~---  143 (459)
T KOG4340|consen   91 ACIYADALRVAFLLL----DNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN--------------------E---  143 (459)
T ss_pred             hcccHHHHHHHHHhc----CCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC--------------------c---
Confidence            999999997765432    4466777666676666554443333333332211100                    0   


Q ss_pred             CCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHHHH
Q 008613          241 KSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFIS  276 (559)
Q Consensus       241 ~~~~~~~~~~~~~~~~~l~~l~~~PEai~~~~~~i~  276 (559)
                             ........+.+..-+.|+++++.|+..+.
T Consensus       144 -------Ad~~in~gCllykegqyEaAvqkFqaAlq  172 (459)
T KOG4340|consen  144 -------ADGQINLGCLLYKEGQYEAAVQKFQAALQ  172 (459)
T ss_pred             -------cchhccchheeeccccHHHHHHHHHHHHh
Confidence                   01112233444555679999999998876

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.48  E-value=0.00092  Score=69.09  Aligned_cols=117  Identities=18%  Similarity=0.074  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHH--HcC--CHHHHHHHHHHHHHcCCC
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL--KTK--QYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~yl--klg--~y~eAi~~~~~AL~ldP~  146 (559)
                      .+.+.-.-.+|++.+|++.|.+.+...-+.+.+.           +..+++.++.  ..|  +|.+|...|++.....+.
T Consensus       131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~-----------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~  199 (290)
T PF04733_consen  131 LELLALAVQILLKMNRPDLAEKELKNMQQIDEDS-----------ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS  199 (290)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCH-----------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--
T ss_pred             ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcH-----------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC
Confidence            3444456668899999999999998876653332           4555555443  344  699999999999888889


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613          147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  198 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~  198 (559)
                      ++..+...+.++..+|+|++|...++.++..+|+++.+..++..+...+++.
T Consensus       200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999888887776666543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.48  E-value=0.0055  Score=67.98  Aligned_cols=105  Identities=16%  Similarity=0.035  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      .+.|..+|.++...++.+.|.+.|...++.+|..+.         +|.-++.+-.+.|..-.|...++++...+|+++..
T Consensus       685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip---------LWllLakleEk~~~~~rAR~ildrarlkNPk~~~l  755 (913)
T KOG0495|consen  685 HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP---------LWLLLAKLEEKDGQLVRARSILDRARLKNPKNALL  755 (913)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch---------HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchh
Confidence            334444444444444444454455554444444433         44444444444444444544555544445554444


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI  184 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a  184 (559)
                      |+..-..-+..|+.+.|.....+||.-+|.+...
T Consensus       756 wle~Ir~ElR~gn~~~a~~lmakALQecp~sg~L  789 (913)
T KOG0495|consen  756 WLESIRMELRAGNKEQAELLMAKALQECPSSGLL  789 (913)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchh
Confidence            4444444444455555555555555444444333

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.48  E-value=0.00024  Score=48.13  Aligned_cols=33  Identities=21%  Similarity=0.275  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613          115 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  147 (559)
Q Consensus       115 ~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~  147 (559)
                      .+|+++|.+|+.+|+|++|+.+|+++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            479999999999999999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.47  E-value=0.0073  Score=66.38  Aligned_cols=144  Identities=13%  Similarity=0.127  Sum_probs=93.5

Q ss_pred             HHHHHHHHHhhCCChHHHHHHHHHHHccC-cHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613           21 EDLKCAAEQLTHTPPEEVAEIGEKLANAS-PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKK   99 (559)
Q Consensus        21 edl~~a~e~l~~~~pee~~~~~~~~~~~~-pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~   99 (559)
                      ++..+..-++-..-|++..+...++.++- .+.+..+++-...... ........++++-|+|+.++.++|+..|+   .
T Consensus        29 e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~-~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~  104 (652)
T KOG2376|consen   29 EEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA-LLVINSFFFEKAYCEYRLNKLDEALKTLK---G  104 (652)
T ss_pred             HHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch-hhhcchhhHHHHHHHHHcccHHHHHHHHh---c
Confidence            33344444444444666555555544442 3333333321111110 01111222689999999999999999998   2


Q ss_pred             hcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------------------CC-CH
Q 008613          100 NLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD------------------------------AK-NV  148 (559)
Q Consensus       100 l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld------------------------------P~-~~  148 (559)
                      +++.+.         .++.-+|++++++++|++|+..|...++.+                              |+ ..
T Consensus       105 ~~~~~~---------~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sy  175 (652)
T KOG2376|consen  105 LDRLDD---------KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSY  175 (652)
T ss_pred             ccccch---------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchH
Confidence            223332         266778999999999999999999986432                              22 34


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613          149 KALYRRGQAYKDIGRLEEAVSDLSNAHEV  177 (559)
Q Consensus       149 kal~~rG~A~~~lg~~eeAi~dlekAl~l  177 (559)
                      .-+|+.+.++...|+|.+|++.+++++.+
T Consensus       176 el~yN~Ac~~i~~gky~qA~elL~kA~~~  204 (652)
T KOG2376|consen  176 ELLYNTACILIENGKYNQAIELLEKALRI  204 (652)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            67999999999999999999999999554

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.47  E-value=0.0071  Score=55.22  Aligned_cols=121  Identities=23%  Similarity=0.181  Sum_probs=89.9

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS-CYLKTKQYDECIKVGSEVLAYDA  145 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~-~ylklg~y~eAi~~~~~AL~ldP  145 (559)
                      .......+...|..+...++|..++..+.+++...+....         ....... +|...++++.|+..+.+++..+|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  161 (291)
T COG0457          91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL---------AEALLALGALYELGDYEEALELYEKALELDP  161 (291)
T ss_pred             ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            4455667777888888888888888888888887665522         3333444 88888888888888888888777


Q ss_pred             ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH
Q 008613          146 ---KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD-DGTIADVLRDAKEILM  196 (559)
Q Consensus       146 ---~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~-~~~a~~~L~~a~~~l~  196 (559)
                         .....++.++..+...+++++|+..+.+++...+. .......+........
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         162 ELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             CccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence               46677777777788888888888888888888888 4566666655555443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=0.0013  Score=68.12  Aligned_cols=109  Identities=15%  Similarity=0.136  Sum_probs=67.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC----------------------------
Q 008613           77 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK----------------------------  128 (559)
Q Consensus        77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg----------------------------  128 (559)
                      .|-|+|..|+|++|+..|+-+.+.+.....         ++.|+|.|++-+|                            
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~e---------l~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahk  133 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAE---------LGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHK  133 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhccCCCCcc---------cchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence            688999999999999999988764333222         4444444444444                            


Q ss_pred             --------------------------------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613          129 --------------------------------QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE  176 (559)
Q Consensus       129 --------------------------------~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~  176 (559)
                                                      .|.+||+.|.++|.-+|+....-...+.||+.+.-|+-+...+.-.+.
T Consensus       134 lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~  213 (557)
T KOG3785|consen  134 LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR  213 (557)
T ss_pred             hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence                                            455566666666655555555555566666666666666666666666


Q ss_pred             hCCCCHHHHHHHHHHHHH
Q 008613          177 VSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       177 l~P~~~~a~~~L~~a~~~  194 (559)
                      ..|+.+.+.....-...+
T Consensus       214 q~pdStiA~NLkacn~fR  231 (557)
T KOG3785|consen  214 QFPDSTIAKNLKACNLFR  231 (557)
T ss_pred             hCCCcHHHHHHHHHHHhh
Confidence            666665555444443333

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.44  E-value=0.00063  Score=64.67  Aligned_cols=80  Identities=16%  Similarity=0.094  Sum_probs=55.7

Q ss_pred             HHHhHHhHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCC-
Q 008613           61 DAQMNYEFNAAKMLKKQGNELYSE----------GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-  129 (559)
Q Consensus        61 ~~~~~~~~~~a~~lk~~Gn~~~k~----------g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~-  129 (559)
                      .+.+..++..++.|.+-|..++..          .-|.+||..|++||.++|...+         +++++|.+|..++. 
T Consensus        15 ea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hd---------Alw~lGnA~ts~A~l   85 (186)
T PF06552_consen   15 EAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHD---------ALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HH---------HHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHH---------HHHHHHHHHHHHHhh
Confidence            333334444466666666665543          3467899999999999999865         89999999987653 


Q ss_pred             ----------HHHHHHHHHHHHHcCCCCHH
Q 008613          130 ----------YDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus       130 ----------y~eAi~~~~~AL~ldP~~~k  149 (559)
                                |++|..+|.+|+.++|+|..
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence                      88899999999999998854

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.42  E-value=0.012  Score=56.81  Aligned_cols=119  Identities=13%  Similarity=0.058  Sum_probs=92.6

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613           55 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  134 (559)
Q Consensus        55 aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi  134 (559)
                      ...+.+...........-.....+..++..++|++|+..+..++..- .     ...+...+-.+++.+.+.+|+|++|+
T Consensus        73 ~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-~-----De~lk~l~~lRLArvq~q~~k~D~AL  146 (207)
T COG2976          73 AAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT-K-----DENLKALAALRLARVQLQQKKADAAL  146 (207)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc-h-----hHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            33344444443445556777889999999999999999999999742 2     24567778889999999999999999


Q ss_pred             HHHHHHHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613          135 KVGSEVLAYDAKN-VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  181 (559)
Q Consensus       135 ~~~~~AL~ldP~~-~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~  181 (559)
                      ...+...  ++.+ +..-..||.++...|+-++|+..|++++..+++.
T Consensus       147 ~~L~t~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         147 KTLDTIK--EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HHHhccc--cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            9887654  3332 3456789999999999999999999999988443

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.00091  Score=68.84  Aligned_cols=85  Identities=19%  Similarity=0.126  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008613          113 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK----NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL  188 (559)
Q Consensus       113 ~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~----~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L  188 (559)
                      .+.-|-.-|.-|++.++|..|+..|++.|+....    ++..|.+|+.|.+.+|+|..|+.|+.+++.++|++..++.+=
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~  159 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG  159 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence            4455667799999999999999999999998654    467899999999999999999999999999999998777666


Q ss_pred             HHHHHHHHh
Q 008613          189 RDAKEILMK  197 (559)
Q Consensus       189 ~~a~~~l~~  197 (559)
                      ..+...|++
T Consensus       160 Akc~~eLe~  168 (390)
T KOG0551|consen  160 AKCLLELER  168 (390)
T ss_pred             hHHHHHHHH
Confidence            666666665

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.37  E-value=0.00025  Score=74.57  Aligned_cols=128  Identities=16%  Similarity=0.162  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY----DA  145 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l----dP  145 (559)
                      ....+-++||.||-.|+|+.||..-..-|.+.....+   +...-.++.|+|.||.-+|+|+.|+++|..++.+    .-
T Consensus       194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~  270 (639)
T KOG1130|consen  194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN  270 (639)
T ss_pred             hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc
Confidence            3455667888999999999999998888887666544   2333458999999999999999999999987654    22


Q ss_pred             C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhhcC
Q 008613          146 K--NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKEDG  200 (559)
Q Consensus       146 ~--~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~------~~a~~~L~~a~~~l~~~~~  200 (559)
                      .  .+...|-+|.+|.-+.+|+.||.++.+-|.+...-      ..+...|+.+...++.+.+
T Consensus       271 r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k  333 (639)
T KOG1130|consen  271 RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK  333 (639)
T ss_pred             hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence            2  35678999999999999999999999888764321      1233344445555544443

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.35  E-value=0.00098  Score=75.26  Aligned_cols=126  Identities=25%  Similarity=0.420  Sum_probs=109.6

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHc
Q 008613           66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT--KQYDECIKVGSEVLAY  143 (559)
Q Consensus        66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl--g~y~eAi~~~~~AL~l  143 (559)
                      ..+..+..++.+||.+|..++|.+|.-.|..++.+.|.+..     ....+..|.+.||..+  ++|..++..|+-++..
T Consensus        48 v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~-----~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~  122 (748)
T KOG4151|consen   48 VFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHH-----VVATLRSNQASCYMQLGLGEYPKAIPECELALES  122 (748)
T ss_pred             HHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccch-----hhhhHHHHHHHHHhhcCccchhhhcCchhhhhhc
Confidence            34556788899999999999999999999999999985532     3566888999999875  5999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613          144 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  196 (559)
Q Consensus       144 dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~  196 (559)
                      .|...++++.|+.+|..+++++-|++++.-....+|.+..+...+.+++..+.
T Consensus       123 ~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~  175 (748)
T KOG4151|consen  123 QPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLE  175 (748)
T ss_pred             cchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh
Confidence            99999999999999999999999999999888999999777776666666663

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.29  E-value=0.00071  Score=72.54  Aligned_cols=125  Identities=16%  Similarity=0.106  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAK-KNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA------  142 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL-~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~------  142 (559)
                      .+..+..+.+.+|-.|+|..|.+.+...- ...+.. .....-..+.+|.|+|.++++++.|..++.+|.+||+      
T Consensus       239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~-~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL  317 (696)
T KOG2471|consen  239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGG-TITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL  317 (696)
T ss_pred             CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCc-cccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence            36678889999999999999999875431 111110 0011223456788999999999999999999999996      


Q ss_pred             ---cCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          143 ---YDA---------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       143 ---ldP---------~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                         +.|         ..-..+|+.|..|+..|+.-+|.++|.+++...-.++.+|-++.++.-..
T Consensus       318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence               122         23578999999999999999999999999999999999999999986543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=0.017  Score=58.19  Aligned_cols=109  Identities=17%  Similarity=0.068  Sum_probs=66.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCHHHH
Q 008613           76 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT----KQYDECIKVGSEVLAYDAKNVKAL  151 (559)
Q Consensus        76 ~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl----g~y~eAi~~~~~AL~ldP~~~kal  151 (559)
                      ..-.++.+..+++-|.....+..+++.+.           .+..+|.++.++    .++.+|.-.|++.-+..|..+..+
T Consensus       142 l~VqI~lk~~r~d~A~~~lk~mq~ided~-----------tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~ll  210 (299)
T KOG3081|consen  142 LNVQILLKMHRFDLAEKELKKMQQIDEDA-----------TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLL  210 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccchHH-----------HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHH
Confidence            34455666666666666666666553332           334444444432    356677777777766666666677


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          152 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       152 ~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                      ...+.|+..+++|++|...++.+|..++++++...++-.+-..+
T Consensus       211 nG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~  254 (299)
T KOG3081|consen  211 NGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHL  254 (299)
T ss_pred             ccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence            77777777777777777777777777777766665555443333

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.17  E-value=0.007  Score=61.69  Aligned_cols=93  Identities=23%  Similarity=0.216  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY----DA  145 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l----dP  145 (559)
                      .+..+.+.|-.+|+.|+|++|++.|..|++.....|.         +-||++.|+++.++|..|+++..+.++.    .|
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl---------lAYniALaHy~~~qyasALk~iSEIieRG~r~HP  213 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL---------LAYNLALAHYSSRQYASALKHISEIIERGIRQHP  213 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhhcCCCch---------hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCC
Confidence            4677888999999999999999999999998777665         8899999999999999999999888864    22


Q ss_pred             CC-------------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 008613          146 KN-------------------------VKALYRRGQAYKDIGRLEEAVSDL  171 (559)
Q Consensus       146 ~~-------------------------~kal~~rG~A~~~lg~~eeAi~dl  171 (559)
                      +.                         ..++...+.+++..++++.|.+.+
T Consensus       214 ElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL  264 (459)
T KOG4340|consen  214 ELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL  264 (459)
T ss_pred             ccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence            11                         245666677777777777776555

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.16  E-value=0.0023  Score=48.93  Aligned_cols=49  Identities=18%  Similarity=0.231  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                      .++|.++.++..+|+|++|...++.+|+++|+|..+......+.+++.+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k   50 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK   50 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence            4678888888888888888888888888888888887777777776643

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.16  E-value=0.022  Score=51.97  Aligned_cols=108  Identities=23%  Similarity=0.294  Sum_probs=88.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Q 008613           80 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-NVKALYRRGQAY  158 (559)
Q Consensus        80 ~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~-~~kal~~rG~A~  158 (559)
                      +++..+++++|+..|.+++...+....      ....+..++..+...++++.++..+.+++...+. ....+..++.++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNE------LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY  212 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccc------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence            899999999999999999886553011      2346666677788999999999999999999999 799999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613          159 KDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  193 (559)
Q Consensus       159 ~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~  193 (559)
                      ...+++++|+..+.+++...|........+..+..
T Consensus       213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (291)
T COG0457         213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLL  247 (291)
T ss_pred             HHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence            99999999999999999999984444444444433

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.14  E-value=0.051  Score=53.87  Aligned_cols=123  Identities=20%  Similarity=0.194  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613           70 AAKMLKKQGNELYSE-GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  148 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~-g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~  148 (559)
                      .++.+...|..|-.. .++..||.+|..+-+....+   +.....-.|+...+..--.+++|.+||..|+++.+..-+|.
T Consensus       112 aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~  188 (288)
T KOG1586|consen  112 AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN  188 (288)
T ss_pred             HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            477777888888777 89999999999999886554   33455567888899888899999999999999987665553


Q ss_pred             -------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHH
Q 008613          149 -------KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI--ADVLRDAKEIL  195 (559)
Q Consensus       149 -------kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a--~~~L~~a~~~l  195 (559)
                             ..++.-|.||+-..+.-.+...+++...++|.....  ...|..+...+
T Consensus       189 LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~ai  244 (288)
T KOG1586|consen  189 LLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAI  244 (288)
T ss_pred             HHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence                   356677888888899999999999999999976432  33444444444

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.14  E-value=0.0031  Score=70.19  Aligned_cols=128  Identities=13%  Similarity=-0.050  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008613           72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL  151 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal  151 (559)
                      ..++-++..|-..|+|++|+.+.++||.+.|..++         +|...|.+|-+.|++.+|....+.|-.+|+.+--.-
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e---------ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiN  265 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE---------LYMTKARILKHAGDLKEAAEAMDEARELDLADRYIN  265 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHH
Confidence            45677899999999999999999999999998866         999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC-----HHHHHHH--HHHHHHHHhhcCCCCCccch
Q 008613          152 YRRGQAYKDIGRLEEAVSDLSNAHEVS--PDD-----GTIADVL--RDAKEILMKEDGHHGPRGLL  208 (559)
Q Consensus       152 ~~rG~A~~~lg~~eeAi~dlekAl~l~--P~~-----~~a~~~L--~~a~~~l~~~~~~~~~~~~~  208 (559)
                      ...+..++..|++++|...+....+-+  |..     ..+|..+  +.+..+.++...+.+.+..+
T Consensus       266 sK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v  331 (517)
T PF12569_consen  266 SKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV  331 (517)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            888888899999999999998765543  211     2345444  44555555555555555443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.10  E-value=0.00035  Score=48.26  Aligned_cols=34  Identities=24%  Similarity=0.195  Sum_probs=31.2

Q ss_pred             HHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 008613           93 KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK  135 (559)
Q Consensus        93 ~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~  135 (559)
                      +|++||+++|.++.         +|+|+|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~---------a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAE---------AYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHH---------HHHHHHHHHHHCcCHHhhcC
Confidence            48999999999976         99999999999999999873

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.10  E-value=0.027  Score=59.40  Aligned_cols=117  Identities=16%  Similarity=0.053  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      +......+..+.+.|++++|.+....+++...+.           -++.+ .-.++.+++..-++..++.++..|+++..
T Consensus       263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-----------~L~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~L  330 (400)
T COG3071         263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-----------RLCRL-IPRLRPGDPEPLIKAAEKWLKQHPEDPLL  330 (400)
T ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-----------hHHHH-HhhcCCCCchHHHHHHHHHHHhCCCChhH
Confidence            5555667778999999999999999999864432           11122 22346789999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  200 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~  200 (559)
                      ++.+|..|+..+.|.+|-..|+.+++..|.. ..+..++.+..++++...
T Consensus       331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~  379 (400)
T COG3071         331 LSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEE  379 (400)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHH
Confidence            9999999999999999999999999988765 467778888877765544

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.09  E-value=0.005  Score=67.89  Aligned_cols=120  Identities=15%  Similarity=0.150  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHH
Q 008613           52 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  131 (559)
Q Consensus        52 e~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~  131 (559)
                      .+..+.+-++...+..++-+--+...|..+..+|+.++|++.|++++....     +...+...|++.++.||.-+.+|+
T Consensus       248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~-----~~~Ql~~l~~~El~w~~~~~~~w~  322 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQS-----EWKQLHHLCYFELAWCHMFQHDWE  322 (468)
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchh-----hHHhHHHHHHHHHHHHHHHHchHH
Confidence            345556666677777788888899999999999999999999999985322     235567789999999999999999


Q ss_pred             HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHH
Q 008613          132 ECIKVGSEVLAYDAK-NVKALYRRGQAYKDIGRL-------EEAVSDLSNAHE  176 (559)
Q Consensus       132 eAi~~~~~AL~ldP~-~~kal~~rG~A~~~lg~~-------eeAi~dlekAl~  176 (559)
                      +|..++.+.++.+.- ..-++|-.|.+|..+++.       ++|...|+++-.
T Consensus       323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            999999999986443 245677789999999998       555555555443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.07  E-value=0.014  Score=64.74  Aligned_cols=105  Identities=18%  Similarity=0.220  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      -..+++.+...|+..+|..+++.|...+...+.+.   .+...+....+++.||+++.+.+.|++.+.+|-+.+|.++-.
T Consensus       354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~---~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~  430 (872)
T KOG4814|consen  354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN---YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLC  430 (872)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchh---hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHH
Confidence            45688999999999999999999999999877653   244458899999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVS  178 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~  178 (559)
                      .+..-.+...-+.-++|+..+.+.....
T Consensus       431 q~~~~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  431 QLLMLQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence            8888888899999999999887776553

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.99  E-value=0.0032  Score=65.40  Aligned_cols=107  Identities=16%  Similarity=0.134  Sum_probs=83.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008613           79 NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY  158 (559)
Q Consensus        79 n~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~  158 (559)
                      ..++...+|..||.++.-.+.+.....        ..+-..+|.||+.+|+|++|+..|+.+...+--+.+.+.+++.++
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE--------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~  101 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEE--------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCK  101 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhh--------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHH
Confidence            356778899999999888875543332        235567899999999999999999999987777889999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          159 KDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       159 ~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                      ..+|.|.+|....+++    |+++--...+=.+--++++
T Consensus       102 FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklnd  136 (557)
T KOG3785|consen  102 FYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLND  136 (557)
T ss_pred             HHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCc
Confidence            9999999998776654    6666555555555444443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.99  E-value=0.062  Score=54.01  Aligned_cols=125  Identities=12%  Similarity=0.053  Sum_probs=97.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc--------CCHHHHHHHHH
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT--------KQYDECIKVGS  138 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl--------g~y~eAi~~~~  138 (559)
                      .+-.-+.....+-.+++.++|++|+...++-+.+.|.+++      ...+++-+|.+++..        .--.+|+..+.
T Consensus        67 s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n------~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~  140 (254)
T COG4105          67 SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN------ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFK  140 (254)
T ss_pred             CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC------hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHH
Confidence            3444677888999999999999999999999999999987      566788888887764        23467888999


Q ss_pred             HHHHcCCCCH---HH--------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          139 EVLAYDAKNV---KA--------------LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       139 ~AL~ldP~~~---ka--------------l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                      .+|...|++.   .+              =+..|.-|...|.|..|+..+++.++-.|+...+...|..+.+....
T Consensus       141 ~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~  216 (254)
T COG4105         141 ELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYA  216 (254)
T ss_pred             HHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence            9999999862   11              12347778888999999999999999988877666666655555433

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.96  E-value=0.021  Score=65.96  Aligned_cols=117  Identities=12%  Similarity=0.031  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008613           72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL  151 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal  151 (559)
                      ..|....+.|.+.|++++|.+.|.+.    |..|+       ..+|..+..++...|+++.|...++++++++|++...|
T Consensus       463 ~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~-------~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y  531 (697)
T PLN03081        463 MHYACMIELLGREGLLDEAYAMIRRA----PFKPT-------VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY  531 (697)
T ss_pred             cchHhHHHHHHhcCCHHHHHHHHHHC----CCCCC-------HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcch
Confidence            34666778899999999999988763    33333       34788888899999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHHHhhc
Q 008613          152 YRRGQAYKDIGRLEEAVSDLSNAHEV--------------------------SPDDGTIADVLRDAKEILMKED  199 (559)
Q Consensus       152 ~~rG~A~~~lg~~eeAi~dlekAl~l--------------------------~P~~~~a~~~L~~a~~~l~~~~  199 (559)
                      ..+..+|...|++++|.+.++...+.                          +|...+++..|..+...+++.+
T Consensus       532 ~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g  605 (697)
T PLN03081        532 VVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYG  605 (697)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999876543                          3444567777777777776543

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.92  E-value=0.00031  Score=75.36  Aligned_cols=77  Identities=19%  Similarity=0.105  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613          116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  192 (559)
Q Consensus       116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~  192 (559)
                      .+-+-+.-+++-+.|+.|+..|.+||+++|+++..+-+|+.+|...++|..|+.|+.+|++++|.....+-+-+.+.
T Consensus         6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~   82 (476)
T KOG0376|consen    6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV   82 (476)
T ss_pred             hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence            34466777888999999999999999999999999999999999999999999999999999998755444443333

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.86  E-value=0.0095  Score=59.84  Aligned_cols=111  Identities=18%  Similarity=0.206  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613           69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  148 (559)
Q Consensus        69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~  148 (559)
                      ..+.....+|....+-|+.+.|-.+|+++-+.......   -.....++.|.+.+|+-.++|..|...|++.+..||.++
T Consensus       210 ~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~---~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~  286 (366)
T KOG2796|consen  210 QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG---LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA  286 (366)
T ss_pred             ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc---cchhHHHHhhhhhheecccchHHHHHHHhhccccCCCch
Confidence            34555566677777777766666666643322111100   112345777889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613          149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  182 (559)
Q Consensus       149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~  182 (559)
                      .+..+.+.|+..+|+..+|++.++.++.+.|...
T Consensus       287 ~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  287 VANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            9999999999999999999999999999999853

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.83  E-value=0.0021  Score=70.28  Aligned_cols=110  Identities=13%  Similarity=0.059  Sum_probs=96.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008613           76 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG  155 (559)
Q Consensus        76 ~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG  155 (559)
                      ..|..+...|+...|+.++..|+.+.|....        .-..|+|.+.++-+-..+|-..+.++|.++-..+-.+|.+|
T Consensus       612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~--------v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g  683 (886)
T KOG4507|consen  612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQD--------VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLG  683 (886)
T ss_pred             cccceeeecCCcHHHHHHHHHHhccChhhhc--------ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcc
Confidence            3444555688999999999999998776543        25779999999999999999999999999988899999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613          156 QAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  193 (559)
Q Consensus       156 ~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~  193 (559)
                      .+|+.+.+.+.|++.|+.|++++|+++++.+.|..+.-
T Consensus       684 ~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  684 NAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             hhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            99999999999999999999999999999888776644

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.82  E-value=0.031  Score=66.20  Aligned_cols=106  Identities=14%  Similarity=0.055  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK----  146 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~----  146 (559)
                      ...+...|..++..|+|++|+..|.+++........   ......++.+++.+++..|++++|...+.+++.+...    
T Consensus       491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~---~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~  567 (903)
T PRK04841        491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV---YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE  567 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence            445677888999999999999999999987664432   1223447789999999999999999999999876221    


Q ss_pred             ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613          147 ----NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  179 (559)
Q Consensus       147 ----~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P  179 (559)
                          ....+..+|.++...|++++|...+++++.+..
T Consensus       568 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        568 QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence                233466789999999999999999999988643

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.82  E-value=0.0019  Score=43.79  Aligned_cols=30  Identities=17%  Similarity=0.236  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613          116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDA  145 (559)
Q Consensus       116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP  145 (559)
                      +|+.+|.+|..+|++++|+..|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            455555555555555555555555555555

...

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.80  E-value=0.0022  Score=43.49  Aligned_cols=34  Identities=35%  Similarity=0.677  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613          148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  181 (559)
Q Consensus       148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~  181 (559)
                      .++|+.+|.+|..+|++++|+..|+++++++|++
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            3689999999999999999999999999999853

...

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.72  E-value=0.0043  Score=60.67  Aligned_cols=80  Identities=11%  Similarity=-0.047  Sum_probs=72.4

Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008613          111 TLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  190 (559)
Q Consensus       111 ~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~  190 (559)
                      +.++.+++.||..|-.+|-+.-|..+++++|.+.|+-+.++..+|.-+...|+|+.|.+.|...+++||.+.-+..+.+.
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi  141 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI  141 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence            34677999999999999999999999999999999999999999999999999999999999999999998665544433

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.69  E-value=0.091  Score=54.58  Aligned_cols=150  Identities=17%  Similarity=0.060  Sum_probs=86.6

Q ss_pred             HHHHHHHhhCCChHHHHHHHHHH-----HccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613           23 LKCAAEQLTHTPPEEVAEIGEKL-----ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLA   97 (559)
Q Consensus        23 l~~a~e~l~~~~pee~~~~~~~~-----~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kA   97 (559)
                      +..-++.+...+|+-+.+....+     .+.+.-++....+++.-........-+.....+..++.+|++.+|...+.+.
T Consensus        50 i~a~a~kL~ssDP~~Vmart~a~gl~~iaa~s~v~~ak~~dqav~dav~y~~arEk~h~~aai~~~~g~~h~a~~~wdkl  129 (491)
T KOG2610|consen   50 ILASAEKLSSSDPEAVMARTFALGLVLIAAASNVEFAKKMDQAVIDAVKYGNAREKRHAKAAILWGRGKHHEAAIEWDKL  129 (491)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHhhhHHhhhhhHHHhhccccccHHHHHHHHH
Confidence            34446677777777654433322     2222223333333333322222333356667788899999999999999999


Q ss_pred             HHhcCCCCCc-----------------------------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613           98 KKNLQGIHSS-----------------------------EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  148 (559)
Q Consensus        98 L~l~p~~~~~-----------------------------e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~  148 (559)
                      |+-.|.+--.                             +.-+....+.--.+.|+.+.|-|++|.+..++++++++.+.
T Consensus       130 L~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~  209 (491)
T KOG2610|consen  130 LDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDC  209 (491)
T ss_pred             HHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcch
Confidence            9887765310                             01112223333355566666666666666666666666666


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 008613          149 KALYRRGQAYKDIGRLEEAVSDLS  172 (559)
Q Consensus       149 kal~~rG~A~~~lg~~eeAi~dle  172 (559)
                      .+.+..+-++...+++.|+++...
T Consensus       210 Wa~Ha~aHVlem~~r~Keg~eFM~  233 (491)
T KOG2610|consen  210 WASHAKAHVLEMNGRHKEGKEFMY  233 (491)
T ss_pred             HHHHHHHHHHHhcchhhhHHHHHH
Confidence            666666666666666666665554

>PLN03077 Protein ECB2; Provisional

Probab=96.61  E-value=0.088  Score=62.38  Aligned_cols=118  Identities=14%  Similarity=0.058  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      ...|....+.|.+.|++++|.+.+++.    |-.|+       ..+|..+-.++...++.+.+....+++++++|+++..
T Consensus       625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~pd-------~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~  693 (857)
T PLN03077        625 LKHYACVVDLLGRAGKLTEAYNFINKM----PITPD-------PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY  693 (857)
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHC----CCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Confidence            456777889999999999999998874    22332       2366666667778899999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHHHhhc
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEV--------------------------SPDDGTIADVLRDAKEILMKED  199 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l--------------------------~P~~~~a~~~L~~a~~~l~~~~  199 (559)
                      |..++.+|...|+|++|.+..+.-.+.                          +|...+|+..|..+..++++.+
T Consensus       694 y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g  768 (857)
T PLN03077        694 YILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASG  768 (857)
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999988766432                          3445677777887777776543

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.59  E-value=0.017  Score=52.54  Aligned_cols=85  Identities=12%  Similarity=0.193  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008613          114 LACSLNSMSCYLKTK---QYDECIKVGSEVLA-YDAK-NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL  188 (559)
Q Consensus       114 ~~~~~nlA~~ylklg---~y~eAi~~~~~AL~-ldP~-~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L  188 (559)
                      ..+.+|+|.|+.+..   +..+.|..++..++ -.|+ ...++|.++..|+.+++|+.++.++...++.+|+|..+...-
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            457889999998766   46678888888886 4444 468999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHhh
Q 008613          189 RDAKEILMKE  198 (559)
Q Consensus       189 ~~a~~~l~~~  198 (559)
                      ..++.++.+.
T Consensus       112 ~~ied~itke  121 (149)
T KOG3364|consen  112 ETIEDKITKE  121 (149)
T ss_pred             HHHHHHHhhc
Confidence            8888777543

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.57  E-value=0.014  Score=59.18  Aligned_cols=77  Identities=25%  Similarity=0.362  Sum_probs=71.4

Q ss_pred             hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008613          109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA  185 (559)
Q Consensus       109 ~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~  185 (559)
                      ...+......|+-..|...++++.|.....+.+.++|+++..+.-||.+|..+|.+.-|+.|++..+..+|+++.+.
T Consensus       176 ~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~  252 (269)
T COG2912         176 NREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE  252 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence            45667778889999999999999999999999999999999999999999999999999999999999999987643

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.52  E-value=0.071  Score=54.61  Aligned_cols=117  Identities=19%  Similarity=0.166  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH------------
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGS------------  138 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~------------  138 (559)
                      .+.....+..+...+++.+|...|..++...|....         +...++.||+..|+++.|...+.            
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~---------~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~  204 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSE---------AKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAH  204 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccch---------HHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHH
Confidence            344455666666677777777777777776666544         55566666666666655443332            


Q ss_pred             ----------------------HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 008613          139 ----------------------EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAKEI  194 (559)
Q Consensus       139 ----------------------~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~--~~~a~~~L~~a~~~  194 (559)
                                            +.+..+|++..+-+.++..|...|++++|++.+-..++.+-.  +..+++.|-++...
T Consensus       205 ~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~  284 (304)
T COG3118         205 GLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA  284 (304)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh
Confidence                                  233458999999999999999999999999999888887653  44566666666555


Q ss_pred             HH
Q 008613          195 LM  196 (559)
Q Consensus       195 l~  196 (559)
                      ++
T Consensus       285 ~g  286 (304)
T COG3118         285 FG  286 (304)
T ss_pred             cC
Confidence            54

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.52  E-value=0.0096  Score=45.51  Aligned_cols=42  Identities=14%  Similarity=0.158  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008613          116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA  157 (559)
Q Consensus       116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A  157 (559)
                      |+|.+|..|.++|+|++|..+++.+|+++|+|..+...+..+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            889999999999999999999999999999998876554433

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.48  E-value=0.099  Score=51.89  Aligned_cols=123  Identities=14%  Similarity=0.138  Sum_probs=86.6

Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc-CCHHHHHHH
Q 008613           58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-KQYDECIKV  136 (559)
Q Consensus        58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl-g~y~eAi~~  136 (559)
                      .++|.+..-....+..+...+++ |+..+..+|+.++.+++++..+...   -..-+.-+.-+|.+|..- .++++||.+
T Consensus        61 A~~h~k~~skhDaat~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Gr---f~~aAk~~~~iaEiyEsdl~d~ekaI~~  136 (288)
T KOG1586|consen   61 ADLHLKAGSKHDAATTYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGR---FTMAAKHHIEIAEIYESDLQDFEKAIAH  136 (288)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHhhhH---HHHHHhhhhhHHHHHhhhHHHHHHHHHH
Confidence            33444444444455556555555 4556999999999999998665432   122233455677777654 899999999


Q ss_pred             HHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008613          137 GSEVLAYDAKN------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI  184 (559)
Q Consensus       137 ~~~AL~ldP~~------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a  184 (559)
                      |+.+-+.....      -+++..-+.--..+++|.+|+..|++.....-++...
T Consensus       137 YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL  190 (288)
T KOG1586|consen  137 YEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL  190 (288)
T ss_pred             HHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence            99998764432      3677777887889999999999999998876666543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.46  E-value=0.032  Score=58.90  Aligned_cols=86  Identities=12%  Similarity=0.033  Sum_probs=68.2

Q ss_pred             cCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc
Q 008613           48 ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT  127 (559)
Q Consensus        48 ~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl  127 (559)
                      ..+.+.....+.++..+...++.+..+..+|..|++.+.|.+|-.+++.++...|...          .|.-+|.+|.++
T Consensus       305 l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~----------~~~~la~~~~~~  374 (400)
T COG3071         305 LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS----------DYAELADALDQL  374 (400)
T ss_pred             cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh----------hHHHHHHHHHHc
Confidence            3344434444555555555555589999999999999999999999999999877654          577899999999


Q ss_pred             CCHHHHHHHHHHHHHc
Q 008613          128 KQYDECIKVGSEVLAY  143 (559)
Q Consensus       128 g~y~eAi~~~~~AL~l  143 (559)
                      |+..+|-+.+++++.+
T Consensus       375 g~~~~A~~~r~e~L~~  390 (400)
T COG3071         375 GEPEEAEQVRREALLL  390 (400)
T ss_pred             CChHHHHHHHHHHHHH
Confidence            9999999999998843

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.39  E-value=0.029  Score=58.64  Aligned_cols=108  Identities=12%  Similarity=0.063  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-CchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIH-SSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-----  144 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~-~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld-----  144 (559)
                      .+.+..+|..+-..++|++|+.+..+|+++..... ......+...++|.++.+|..+|+.-+|.++|+++.++.     
T Consensus       162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd  241 (518)
T KOG1941|consen  162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD  241 (518)
T ss_pred             eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence            34466788889999999999999999999877654 333456677889999999999999999999999998763     


Q ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613          145 -AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS  178 (559)
Q Consensus       145 -P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~  178 (559)
                       +.++..+.-.|.+|...|+.|.|..-|+.|..+-
T Consensus       242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  242 RALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence             4457788889999999999999999999997753

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.33  E-value=0.046  Score=54.05  Aligned_cols=97  Identities=18%  Similarity=0.173  Sum_probs=73.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHcCC------C
Q 008613           80 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD-------ECIKVGSEVLAYDA------K  146 (559)
Q Consensus        80 ~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~-------eAi~~~~~AL~ldP------~  146 (559)
                      .+.....+++|++.|.-||-...-..  +.....+.++..+|.+|..+++.+       .|+..|.++++...      +
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~--~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~  163 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKK--EKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD  163 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence            56667789999999998886532211  113357789999999999999844       45666666665432      2


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613          147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS  178 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~  178 (559)
                      ....+|.+|..+..+|++++|+.+|.+++..-
T Consensus       164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            36889999999999999999999999999753

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.26  E-value=0.081  Score=62.75  Aligned_cols=108  Identities=14%  Similarity=0.051  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA-----  145 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP-----  145 (559)
                      +..+...|..++..|++++|..++.+++.+....... .......++..++.+++..|++++|...+.+++.+..     
T Consensus       531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~  609 (903)
T PRK04841        531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE-QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ  609 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc-cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch
Confidence            4456778999999999999999999999875543210 1112334567889999999999999999999987633     


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613          146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  179 (559)
Q Consensus       146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P  179 (559)
                      ....++..+|.++...|++++|...+++++.+..
T Consensus       610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~  643 (903)
T PRK04841        610 QQLQCLAMLAKISLARGDLDNARRYLNRLENLLG  643 (903)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            2356777899999999999999999999987643

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.25  E-value=0.11  Score=49.76  Aligned_cols=103  Identities=13%  Similarity=0.060  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--
Q 008613           68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA--  145 (559)
Q Consensus        68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP--  145 (559)
                      ...-..+..+|+.|++.|++++|++.|.++...+...      ......++++-.+.+..++|..+..+..++-.+--  
T Consensus        33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~  106 (177)
T PF10602_consen   33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG  106 (177)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence            3346778899999999999999999999988864433      23566888999999999999999999888876532  


Q ss_pred             CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613          146 KNV----KALYRRGQAYKDIGRLEEAVSDLSNAHE  176 (559)
Q Consensus       146 ~~~----kal~~rG~A~~~lg~~eeAi~dlekAl~  176 (559)
                      .++    +.....|.++...++|.+|...|-.++.
T Consensus       107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence            222    3344567778888999999988866544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.23  E-value=0.0075  Score=40.26  Aligned_cols=31  Identities=23%  Similarity=0.358  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613          116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus       116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      +++++|.||.++|++++|+..++++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4455555555555555555555555555554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.18  E-value=0.043  Score=56.42  Aligned_cols=114  Identities=9%  Similarity=-0.057  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008613           74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-TKQYDECIKVGSEVLAYDAKNVKALY  152 (559)
Q Consensus        74 lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk-lg~y~eAi~~~~~AL~ldP~~~kal~  152 (559)
                      |....+...+.+..+.|-..|.+|+...+....         +|...|...+. .++.+.|...|+.+++..|.+...|.
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~---------vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~   74 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYH---------VYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWL   74 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-TH---------HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            444555555666688889999999854333333         77788888666 56777799999999999999999998


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHH
Q 008613          153 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEILM  196 (559)
Q Consensus       153 ~rG~A~~~lg~~eeAi~dlekAl~l~P~~~---~a~~~L~~a~~~l~  196 (559)
                      .-..-+..+++.+.|...|++++..-|.+.   .+|...-..+...+
T Consensus        75 ~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G  121 (280)
T PF05843_consen   75 EYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG  121 (280)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence            888888999999999999999998877654   46665555444443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.18  E-value=0.0091  Score=39.83  Aligned_cols=33  Identities=30%  Similarity=0.540  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613          149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  181 (559)
Q Consensus       149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~  181 (559)
                      .+++++|.+|..+|++++|+..|++++...|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            478999999999999999999999999999974

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.13  E-value=0.24  Score=54.11  Aligned_cols=66  Identities=15%  Similarity=0.138  Sum_probs=57.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613          112 LLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  177 (559)
Q Consensus       112 l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~--~~kal~~rG~A~~~lg~~eeAi~dlekAl~l  177 (559)
                      ....+..++|.|..++|+.++||+.++..++.+|.  +...++++-.+++.+++|.++...+.+.-++
T Consensus       257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi  324 (539)
T PF04184_consen  257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI  324 (539)
T ss_pred             hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence            34567788999999999999999999999998875  5679999999999999999999998886433

The molecular function of this protein is uncertain.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.12  E-value=0.012  Score=61.48  Aligned_cols=127  Identities=17%  Similarity=0.182  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CC
Q 008613           72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA----KN  147 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP----~~  147 (559)
                      ..+.-.|+.+...+.|.++++.|++|+++.....+   .-+-..++..++..|-.+++|++|+-+..+|+++--    ++
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D---~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d  199 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD---AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKD  199 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC---ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCc
Confidence            34555888899999999999999999998665443   223445888999999999999999999999988743    22


Q ss_pred             ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH----HHHHHHHHHHHHHHhhcCC
Q 008613          148 ------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVS--PDDG----TIADVLRDAKEILMKEDGH  201 (559)
Q Consensus       148 ------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~--P~~~----~a~~~L~~a~~~l~~~~~~  201 (559)
                            .-.+|+.+.+|..+|+.-.|.++++++-++.  -.|.    .-...++.++...++.+.+
T Consensus       200 ~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~a  265 (518)
T KOG1941|consen  200 WSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERA  265 (518)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHH
Confidence                  2468889999999999999999999997763  2232    2223344555555444443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.07  E-value=0.034  Score=56.99  Aligned_cols=104  Identities=13%  Similarity=0.067  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613           69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  148 (559)
Q Consensus        69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~  148 (559)
                      ..+......+....+.|+.++|..+|..|+.+.|.+++         ++...|......++.-+|-.+|.+||.++|.|.
T Consensus       114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~---------~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns  184 (472)
T KOG3824|consen  114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ---------ILIEMGQFREMHNEIVEADQCYVKALTISPGNS  184 (472)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH---------HHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence            33444455666778899999999999999999999987         888899988888899999999999999999999


Q ss_pred             HHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCC
Q 008613          149 KALYRRGQAYKDI----GRLEEAVSDLSNAHEVSPDD  181 (559)
Q Consensus       149 kal~~rG~A~~~l----g~~eeAi~dlekAl~l~P~~  181 (559)
                      +++.+|+...--.    .++-+.+.+.+..+..-+..
T Consensus       185 eALvnR~RT~plV~~iD~r~l~svdskrd~~~~i~~s  221 (472)
T KOG3824|consen  185 EALVNRARTTPLVSAIDRRMLRSVDSKRDEFNHIQHS  221 (472)
T ss_pred             HHHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            9999998765332    23344555555555544443

>smart00028 TPR Tetratricopeptide repeats

Probab=96.04  E-value=0.011  Score=37.47  Aligned_cols=31  Identities=29%  Similarity=0.413  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613          116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus       116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      +|+++|.||...+++++|+..++++++++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            5677777777777777777777777777664

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.04  E-value=0.64  Score=47.14  Aligned_cols=92  Identities=16%  Similarity=0.143  Sum_probs=76.3

Q ss_pred             cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008613           84 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR  163 (559)
Q Consensus        84 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~  163 (559)
                      .+++.+|.-.|.+.-+..+..+         .++...+.|++.+++|++|......+|..+++++.++.++-.+-..+|.
T Consensus       186 gek~qdAfyifeE~s~k~~~T~---------~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk  256 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEKTPPTP---------LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK  256 (299)
T ss_pred             chhhhhHHHHHHHHhcccCCCh---------HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence            4568889999988777444433         3788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHhCCCCHHH
Q 008613          164 LEEAVSDL-SNAHEVSPDDGTI  184 (559)
Q Consensus       164 ~eeAi~dl-ekAl~l~P~~~~a  184 (559)
                      ..++...+ ......+|+++-+
T Consensus       257 d~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  257 DAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             ChHHHHHHHHHHHhcCCcchHH
Confidence            98877666 4445567887654

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.97  E-value=0.14  Score=59.11  Aligned_cols=145  Identities=15%  Similarity=0.078  Sum_probs=108.4

Q ss_pred             HHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHH
Q 008613           45 LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY  124 (559)
Q Consensus        45 ~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~y  124 (559)
                      .++.+..+.+.+.......++..++..-+...+|-.+++.|++++|. .+.+++...+.+.        ...+--+-.||
T Consensus        17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~-~~Le~~~~~~~~D--------~~tLq~l~~~y   87 (932)
T KOG2053|consen   17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEAL-KLLEALYGLKGTD--------DLTLQFLQNVY   87 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHH-HHHhhhccCCCCc--------hHHHHHHHHHH
Confidence            34555667777777777777777777778888999999999999999 4555565544442        22566778999


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHhhc
Q 008613          125 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT-IADVLRDAKEILMKED  199 (559)
Q Consensus       125 lklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~-a~~~L~~a~~~l~~~~  199 (559)
                      ..++++++|+..|++++..+|. .+-++.+=.+|.+.+.|.+=-+.--+..+..|+++- .|..+..+...+...+
T Consensus        88 ~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~  162 (932)
T KOG2053|consen   88 RDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSEN  162 (932)
T ss_pred             HHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCc
Confidence            9999999999999999999999 889999999999999887754444444556777653 5555555554444333

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.96  E-value=0.047  Score=48.08  Aligned_cols=96  Identities=11%  Similarity=0.092  Sum_probs=75.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCC
Q 008613           77 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-----------QYDECIKVGSEVLAYDA  145 (559)
Q Consensus        77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg-----------~y~eAi~~~~~AL~ldP  145 (559)
                      ++..+|.+|+|-+|++...+.+...+.+...      ..++.--|.++.++.           -+-.+++.|.++..+.|
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~------~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp   75 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESS------WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP   75 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCch------HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence            5678999999999999999999987776531      123444455554432           23458899999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613          146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS  178 (559)
Q Consensus       146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~  178 (559)
                      ..+..+|.+|.-+-....|++++.-.+++|.+.
T Consensus        76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            999999999999888888999999999988763

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.95  E-value=0.29  Score=59.21  Aligned_cols=115  Identities=11%  Similarity=-0.009  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHH
Q 008613           72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-AKNVKA  150 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld-P~~~ka  150 (559)
                      ..|......|.+.|++++|+..|.+..... ..|+       ...|..+..+|.+.|++++|++.+.+.++.. +.+...
T Consensus       615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~G-v~PD-------~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t  686 (1060)
T PLN03218        615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPD-------EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS  686 (1060)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence            455566667777888888888877766531 1121       2366677777778888888888888777654 335677


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHH
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEV--SPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l--~P~~~~a~~~L~~a~~~l  195 (559)
                      |..+..+|...|++++|+..|++....  .|+ ...+..|-....+.
T Consensus       687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~  732 (1060)
T PLN03218        687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEG  732 (1060)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHC
Confidence            777888888888888888888776543  343 44555555444443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.93  E-value=0.012  Score=40.90  Aligned_cols=26  Identities=23%  Similarity=0.250  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613          117 SLNSMSCYLKTKQYDECIKVGSEVLA  142 (559)
Q Consensus       117 ~~nlA~~ylklg~y~eAi~~~~~AL~  142 (559)
                      |.++|.+|.++|+|++|+..|+++|.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            55666666666666666666666443

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.90  E-value=0.02  Score=56.96  Aligned_cols=85  Identities=12%  Similarity=0.022  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613          113 LLACSLNSMSCYLKTKQYDECIKVGSEVLAY--------DAKN----------VKALYRRGQAYKDIGRLEEAVSDLSNA  174 (559)
Q Consensus       113 ~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l--------dP~~----------~kal~~rG~A~~~lg~~eeAi~dlekA  174 (559)
                      ...++...|.-++++|+|.+|+..|..||..        .|..          ...|.+..+|++..++|-++++.+...
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            4457888999999999999999999998742        3433          347899999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHh
Q 008613          175 HEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       175 l~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                      |..+|++..++...+.++...=.
T Consensus       257 L~~~~~nvKA~frRakAhaa~Wn  279 (329)
T KOG0545|consen  257 LRHHPGNVKAYFRRAKAHAAVWN  279 (329)
T ss_pred             HhcCCchHHHHHHHHHHHHhhcC
Confidence            99999999988887777655433

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.89  E-value=0.059  Score=51.82  Aligned_cols=121  Identities=13%  Similarity=0.013  Sum_probs=90.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHH
Q 008613           79 NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA-YDAKNVKALYRRGQA  157 (559)
Q Consensus        79 n~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~-ldP~~~kal~~rG~A  157 (559)
                      ...-..=+.+.++..-.+.+...|...          -.+.++....++|+|.+|...|.+++. +.-+++..++.++++
T Consensus        64 ~a~~q~ldP~R~~Rea~~~~~~ApTvq----------nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~A  133 (251)
T COG4700          64 MALQQKLDPERHLREATEELAIAPTVQ----------NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQA  133 (251)
T ss_pred             HHHHHhcChhHHHHHHHHHHhhchhHH----------HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHH
Confidence            334444456666666667777666553          477899999999999999999999985 567889999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          158 YKDIGRLEEAVSDLSNAHEVSPDD--GTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       158 ~~~lg~~eeAi~dlekAl~l~P~~--~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      ...++++.+|...+++..+.+|..  +...-.++.+.-..+++..+...++..+
T Consensus       134 qfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~  187 (251)
T COG4700         134 QFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAI  187 (251)
T ss_pred             HHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHH
Confidence            999999999999999999998863  4455566666666655544433444333

>PLN03077 Protein ECB2; Provisional

Probab=95.88  E-value=0.21  Score=59.21  Aligned_cols=113  Identities=9%  Similarity=-0.044  Sum_probs=80.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008613           76 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG  155 (559)
Q Consensus        76 ~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG  155 (559)
                      ..-..+.+.|++++|..+|....+...-.|+       ...|..+..+|.+.|++++|.+.+++. .+.|+ +..|..+-
T Consensus       594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-------~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl  664 (857)
T PLN03077        594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPN-------LKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALL  664 (857)
T ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-------hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHH
Confidence            3335577778888888888877754444443       236777888888888888888888765 34554 55566666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          156 QAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       156 ~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                      .++..-++.+.+....+++++++|++...+..|..++...++
T Consensus       665 ~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~  706 (857)
T PLN03077        665 NACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK  706 (857)
T ss_pred             HHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence            677778888888888888888888888777777766655444

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.85  E-value=0.19  Score=58.17  Aligned_cols=116  Identities=9%  Similarity=-0.073  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008613           73 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  152 (559)
Q Consensus        73 ~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~  152 (559)
                      .+...-..+.+.|++++|.++|....+.....|+       ...|..+..+|.+.|++++|++.+++.- ..| +...|.
T Consensus       428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-------~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~  498 (697)
T PLN03081        428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-------AMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWA  498 (697)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-------ccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHH
Confidence            3444555666677777777777666553333332       1256667777778888888887776542 233 455677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          153 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       153 ~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                      .+..++...|+++.|...+++.+.++|++...+..|..+....++
T Consensus       499 ~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~  543 (697)
T PLN03081        499 ALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR  543 (697)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence            777788888888888888888888888776666666555544443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.84  E-value=0.071  Score=48.66  Aligned_cols=64  Identities=14%  Similarity=0.037  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA  142 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~  142 (559)
                      ....+...+..+...|+|++|+..+.+++.++|.+..         +|..+-.||...|++.+|++.|.+..+
T Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~---------~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEE---------AYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HH---------HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            3667778888999999999999999999999998855         899999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.83  E-value=0.073  Score=61.23  Aligned_cols=92  Identities=21%  Similarity=0.259  Sum_probs=79.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008613           80 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK  159 (559)
Q Consensus        80 ~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~  159 (559)
                      -....++|..|+....+.++..|+.+-         +..-.|..+.++|++++|....+..-.+.+++...+-.+-.+|.
T Consensus        18 d~ld~~qfkkal~~~~kllkk~Pn~~~---------a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~   88 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKKHPNALY---------AKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR   88 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHCCCcHH---------HHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHH
Confidence            356678899999999999998777542         45566888999999999996666666677888899999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCC
Q 008613          160 DIGRLEEAVSDLSNAHEVSPD  180 (559)
Q Consensus       160 ~lg~~eeAi~dlekAl~l~P~  180 (559)
                      .++++++|+..|++++..+|.
T Consensus        89 d~~~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   89 DLGKLDEAVHLYERANQKYPS  109 (932)
T ss_pred             HHhhhhHHHHHHHHHHhhCCc
Confidence            999999999999999999998

>smart00028 TPR Tetratricopeptide repeats

Probab=95.82  E-value=0.013  Score=37.12  Aligned_cols=33  Identities=36%  Similarity=0.665  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613          149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  181 (559)
Q Consensus       149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~  181 (559)
                      .+|+++|.+|..++++++|+.+|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            578999999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.78  E-value=0.12  Score=56.23  Aligned_cols=104  Identities=15%  Similarity=0.162  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHH
Q 008613           73 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-DAKNVKAL  151 (559)
Q Consensus        73 ~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l-dP~~~kal  151 (559)
                      ..+.++.|+.+.|+.++||+.|+..++.+|....       ..+++|+-.|++.+++|.++.....+-=++ -|+.+...
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~-------l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~  333 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-------LNIRENLIEALLELQAYADVQALLAKYDDISLPKSATIC  333 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch-------hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHH
Confidence            3456899999999999999999999998776422       348999999999999999998887774333 36677777


Q ss_pred             HHHHHHHHH-cCC---------------HHHHHHHHHHHHHhCCCCHH
Q 008613          152 YRRGQAYKD-IGR---------------LEEAVSDLSNAHEVSPDDGT  183 (559)
Q Consensus       152 ~~rG~A~~~-lg~---------------~eeAi~dlekAl~l~P~~~~  183 (559)
                      |..+....+ .++               -..|++.+++|++.+|.-+.
T Consensus       334 YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~  381 (539)
T PF04184_consen  334 YTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK  381 (539)
T ss_pred             HHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence            777665432 222               13478899999999988654

The molecular function of this protein is uncertain.

>PRK10941 hypothetical protein; Provisional

Probab=95.64  E-value=0.096  Score=53.57  Aligned_cols=79  Identities=13%  Similarity=-0.079  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      ...+.++=..|.+.++|..|+.+....+.+.|+++.         -+.-||.+|.+++.+..|+.+++.-|+..|+.+.+
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~---------e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a  251 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPY---------EIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS  251 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence            445666777899999999999999999999999975         67889999999999999999999999999999887


Q ss_pred             HHHHHHHH
Q 008613          151 LYRRGQAY  158 (559)
Q Consensus       151 l~~rG~A~  158 (559)
                      ..-+-++.
T Consensus       252 ~~ik~ql~  259 (269)
T PRK10941        252 EMIRAQIH  259 (269)
T ss_pred             HHHHHHHH
Confidence            66555443

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.59  E-value=0.25  Score=59.76  Aligned_cols=62  Identities=13%  Similarity=0.056  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613          116 CSLNSMSCYLKTKQYDECIKVGSEVLAYD-AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  177 (559)
Q Consensus       116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ld-P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l  177 (559)
                      .|..+-.+|.+.|++++|++.|.+..+.+ +.+...|..+..+|...|++++|+..|++....
T Consensus       581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence            44445555555555565655555555544 234455555555555666666666665555543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.58  E-value=0.9  Score=46.54  Aligned_cols=113  Identities=16%  Similarity=0.059  Sum_probs=87.0

Q ss_pred             hHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCC----C-CCchhhhhHHHHHHHHHHHHHHcCCHHHHHH---HH
Q 008613           67 EFNAAKMLKKQGNELYSEG-RFSNALQKYLLAKKNLQG----I-HSSEGRTLLLACSLNSMSCYLKTKQYDECIK---VG  137 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g-~y~eAi~~Y~kAL~l~p~----~-~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~---~~  137 (559)
                      ...-+..+++.|..+++.+ +|++|+..+++++++...    . ...+..+++..++..++.+|+..+.++...+   ..
T Consensus        31 ~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l  110 (278)
T PF08631_consen   31 AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNAL  110 (278)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            4445889999999999999 999999999999999633    1 1235678999999999999999987754333   33


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613          138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  179 (559)
Q Consensus       138 ~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P  179 (559)
                      +.+-.-.|+.+..++..=.++...++.+++.+.+.+.+.--+
T Consensus       111 ~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  111 RLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            333344577777776666666668999999999999988644

It is also involved in sporulation [].

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.57  E-value=0.3  Score=52.95  Aligned_cols=116  Identities=14%  Similarity=0.023  Sum_probs=100.1

Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613           58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG  137 (559)
Q Consensus        58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~  137 (559)
                      .++..++..+.-....|...|.--..++++..|-..|.+||..+-.+..         +|...+.|-++.+....|-+.+
T Consensus        60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~it---------LWlkYae~Emknk~vNhARNv~  130 (677)
T KOG1915|consen   60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNIT---------LWLKYAEFEMKNKQVNHARNVW  130 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccch---------HHHHHHHHHHhhhhHhHHHHHH
Confidence            4444455555556777888888888999999999999999998766644         9999999999999999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613          138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  182 (559)
Q Consensus       138 ~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~  182 (559)
                      ++|+.+-|.--+.||..-..--.+|+..-|...|++=+...|+..
T Consensus       131 dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq  175 (677)
T KOG1915|consen  131 DRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ  175 (677)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH
Confidence            999999999999999988888899999999999999999999753

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.54  E-value=0.065  Score=63.42  Aligned_cols=117  Identities=12%  Similarity=0.100  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHcCCC
Q 008613           74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT----K---QYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        74 lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl----g---~y~eAi~~~~~AL~ldP~  146 (559)
                      +....++++..+.|+.|+..|++.-.-.|...+      --.+.++.|...+..    +   .|.+|+..|++.. -.|.
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  550 (932)
T PRK13184        478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKE------GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVG  550 (932)
T ss_pred             cccCcHHHHhhHHHHHHHHHHHHHhhcCCCccc------chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCC
Confidence            334567788899999999999999998887653      123666777776653    2   4677777776654 4577


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                      -+--|...+.+|..+++|+|-+++|.-|++..|.++.+-.....+..++.+
T Consensus       551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  601 (932)
T PRK13184        551 APLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHE  601 (932)
T ss_pred             CchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence            788899999999999999999999999999999999877766666666544

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.44  E-value=0.23  Score=45.28  Aligned_cols=90  Identities=12%  Similarity=0.011  Sum_probs=64.5

Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613           58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRF---SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  134 (559)
Q Consensus        58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y---~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi  134 (559)
                      ++...+........+..++.+.++.+..+-   .+.|..+...+.  ..++.     -.-.|.|.++..|+++++|+.++
T Consensus        19 e~~~rq~a~~~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~~~~~-----~rRe~lyYLAvg~yRlkeY~~s~   91 (149)
T KOG3364|consen   19 EEILRQAARSDVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK--SAHPE-----RRRECLYYLAVGHYRLKEYSKSL   91 (149)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh--hcCcc-----cchhhhhhhHHHHHHHhhHHHHH
Confidence            344444444344466777888888876654   457788888776  12221     12348889999999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHH
Q 008613          135 KVGSEVLAYDAKNVKALYRR  154 (559)
Q Consensus       135 ~~~~~AL~ldP~~~kal~~r  154 (559)
                      ++++..|+.+|+|..+.-..
T Consensus        92 ~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   92 RYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHhhCCCcHHHHHHH
Confidence            99999999999998775443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.40  E-value=0.021  Score=56.34  Aligned_cols=60  Identities=13%  Similarity=0.278  Sum_probs=55.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008613          124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  183 (559)
Q Consensus       124 ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~  183 (559)
                      ..+-++++.+.+.|.+++++-|++...|+|+|......|+++.|++.|++.++++|.+-.
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            446789999999999999999999999999999999999999999999999999998743

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.38  E-value=0.41  Score=57.69  Aligned_cols=105  Identities=13%  Similarity=0.038  Sum_probs=62.0

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 008613           85 GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL  164 (559)
Q Consensus        85 g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~  164 (559)
                      |.-+...+.|.+|.+++...          .+|..|.-+|.+..++++|.+.++.-++..-...+.|...+..++...+-
T Consensus      1511 G~eesl~kVFeRAcqycd~~----------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~ 1580 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYCDAY----------TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEA 1580 (1710)
T ss_pred             CcHHHHHHHHHHHHHhcchH----------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHH
Confidence            34444555566666653332          25566666666666666666666666666555566666666666666666


Q ss_pred             HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhhc
Q 008613          165 EEAVSDLSNAHEVSPD--DGTIADVLRDAKEILMKED  199 (559)
Q Consensus       165 eeAi~dlekAl~l~P~--~~~a~~~L~~a~~~l~~~~  199 (559)
                      ++|...+.+|++--|.  |.++......+..+.++.+
T Consensus      1581 ~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1581 EAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred             HHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence            6666666666666665  4455555555555554443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.32  E-value=0.2  Score=52.18  Aligned_cols=111  Identities=18%  Similarity=0.115  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCC------------------------CCchhhhhHHHHHHHHHHHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKK-NLQGI------------------------HSSEGRTLLLACSLNSMSCY  124 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~-l~p~~------------------------~~~e~~~l~~~~~~nlA~~y  124 (559)
                      .+......+..++..|+..+|+......+. .....                        .........+.+++.+|...
T Consensus       183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~  262 (352)
T PF02259_consen  183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL  262 (352)
T ss_pred             CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence            456677778888888999999988888877 22211                        02234566778888888888


Q ss_pred             HHc------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHhCCC
Q 008613          125 LKT------KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL-----------------EEAVSDLSNAHEVSPD  180 (559)
Q Consensus       125 lkl------g~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~-----------------eeAi~dlekAl~l~P~  180 (559)
                      ...      +.+++++..|.++++++|.+.++|+..|..+..+-+.                 ..|+..|-+++.+.+.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            888      8899999999999999999999999998888766332                 2377777777777666

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.29  E-value=0.032  Score=38.74  Aligned_cols=29  Identities=28%  Similarity=0.440  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613          150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVS  178 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~dlekAl~l~  178 (559)
                      +|.++|.+|..+|+|++|+..|+++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            58899999999999999999999976553

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.15  E-value=0.064  Score=55.06  Aligned_cols=75  Identities=17%  Similarity=0.118  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613          115 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR  189 (559)
Q Consensus       115 ~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~  189 (559)
                      .+-.+.|.-..+.|+.++|...|..|+.++|+++.++.+.|.....-.+.-+|-.+|-+||.++|.+.++.-+..
T Consensus       117 ~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~  191 (472)
T KOG3824|consen  117 ILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA  191 (472)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence            344566677778999999999999999999999999999999999999999999999999999999987665433

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.09  E-value=0.44  Score=57.50  Aligned_cols=118  Identities=12%  Similarity=-0.006  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--NV  148 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~--~~  148 (559)
                      -..+..+...|-+.++|++|.++|+.-++......         ..|...+..+++..+-++|.....+||+--|.  +.
T Consensus      1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~---------~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTR---------KVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchh---------hHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence            44566778899999999999999999999877443         48999999999999999999999999999998  78


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                      +.+..-++.-+..|+.+.+...|+..+.-+|.-.+.|..+-+...+.+.
T Consensus      1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD 1649 (1710)
T ss_pred             HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC
Confidence            8999999999999999999999999999999998999888776555433

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.95  E-value=2.8  Score=44.80  Aligned_cols=114  Identities=13%  Similarity=0.003  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008613           74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR  153 (559)
Q Consensus        74 lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~  153 (559)
                      +...=...+..|+|+.||++.+......--.+ ......+..++...+...+. -+...|..+..+++++.|+.+-+-..
T Consensus       191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~-~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~  268 (531)
T COG3898         191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEK-DVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVV  268 (531)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHH
Confidence            33344567889999999999876654322221 12234445555555555444 35889999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008613          154 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  190 (559)
Q Consensus       154 rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~  190 (559)
                      -+.+|+.-|+..++-..++.+-+.+|+ +.|+..+..
T Consensus       269 AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~  304 (531)
T COG3898         269 AARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVR  304 (531)
T ss_pred             HHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHH
Confidence            999999999999999999999999885 445444433

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.94  E-value=0.13  Score=43.91  Aligned_cols=64  Identities=17%  Similarity=0.158  Sum_probs=46.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613           80 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY  143 (559)
Q Consensus        80 ~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l  143 (559)
                      ..++.++|.+|++.+.+.++................++.++|.++...|++++|+..+++++++
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4567899999999999999876554332111234456777888888888888888888888766

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=94.84  E-value=0.39  Score=49.33  Aligned_cols=107  Identities=13%  Similarity=0.052  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-
Q 008613           71 AKMLKKQGNELYS-EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV-  148 (559)
Q Consensus        71 a~~lk~~Gn~~~k-~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~-  148 (559)
                      ...|...|...+. .++...|...|+.+++..+.+..         +|..-...+.++++.+.|...|++++..-|... 
T Consensus        35 ~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~---------~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~  105 (280)
T PF05843_consen   35 YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD---------FWLEYLDFLIKLNDINNARALFERAISSLPKEKQ  105 (280)
T ss_dssp             THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH---------HHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhH
Confidence            4556677777666 67777799999999999888865         666777888899999999999999998876654 


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008613          149 --KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD  186 (559)
Q Consensus       149 --kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~  186 (559)
                        ..|.....--...|+++...+.++++.++.|++..+..
T Consensus       106 ~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~  145 (280)
T PF05843_consen  106 SKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL  145 (280)
T ss_dssp             CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence              45555555557889999999999999999998665544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.76  E-value=0.038  Score=54.61  Aligned_cols=60  Identities=18%  Similarity=0.094  Sum_probs=55.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613           80 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  148 (559)
Q Consensus        80 ~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~  148 (559)
                      .+.+.++++.|.++|.+++.+.|....         -|++++....+.|+++.|.+.|+++++++|++-
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~---------gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAA---------GWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhh---------hhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            467789999999999999999888765         899999999999999999999999999999873

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.73  E-value=0.46  Score=51.54  Aligned_cols=100  Identities=15%  Similarity=0.098  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613           68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  147 (559)
Q Consensus        68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~  147 (559)
                      ..-++.|.-.+....++.+...|-..+-.||..+|.+.          ++...-.+-+++++++.|-..|++-|+..|.+
T Consensus       401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K----------lFk~YIelElqL~efDRcRkLYEkfle~~Pe~  470 (677)
T KOG1915|consen  401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK----------LFKGYIELELQLREFDRCRKLYEKFLEFSPEN  470 (677)
T ss_pred             chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh----------HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHh
Confidence            33577888888899999999999999999999988863          44444456678899999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613          148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEV  177 (559)
Q Consensus       148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l  177 (559)
                      ..+|...|..-..||+.+.|...|+-|+..
T Consensus       471 c~~W~kyaElE~~LgdtdRaRaifelAi~q  500 (677)
T KOG1915|consen  471 CYAWSKYAELETSLGDTDRARAIFELAISQ  500 (677)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence            999999999999999999999999988764

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.65  E-value=1  Score=45.30  Aligned_cols=107  Identities=11%  Similarity=0.057  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----C
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-----A  145 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld-----P  145 (559)
                      +..+...+++|-..++|++|..++.+|++.-..+..   .--.+..|-..+....++..|.+++.+|++|..+.     |
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs---lfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gsp  107 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS---LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSP  107 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence            445555666777788999999999999865444322   01123466667777788899999999999998763     4


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008613          146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  180 (559)
Q Consensus       146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~  180 (559)
                      +-+..-..++.-.....+.++|+..|++++.+.-.
T Consensus       108 dtAAmaleKAak~lenv~Pd~AlqlYqralavve~  142 (308)
T KOG1585|consen  108 DTAAMALEKAAKALENVKPDDALQLYQRALAVVEE  142 (308)
T ss_pred             chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence            44444455555556667889999999999887543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.55  E-value=0.19  Score=42.72  Aligned_cols=65  Identities=25%  Similarity=0.202  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHh
Q 008613          133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD--GTIADVLRDAKEILMK  197 (559)
Q Consensus       133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~--~~a~~~L~~a~~~l~~  197 (559)
                      .+..+++.+..+|++..+.|.++.++...|+|++|++.+-.++..++++  ..+...+-.+-..++.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            4677889999999999999999999999999999999999999998865  5677777777666654

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.49  E-value=2.3  Score=40.10  Aligned_cols=114  Identities=10%  Similarity=-0.085  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k  149 (559)
                      ....+.+...+....++.+++...+...-.+.|..+.         +-.--+..|...|+|.+|+..++.+.+-.|..+-
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e---------~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~   79 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPE---------LDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY   79 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchH---------HHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH
Confidence            3667788888899999999999999888888888876         6677889999999999999999999999999998


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                      +--.++.|+..+++.+-=.. -..+++..+ ++.+...++.+..+
T Consensus        80 ~kALlA~CL~~~~D~~Wr~~-A~evle~~~-d~~a~~Lv~~Ll~~  122 (160)
T PF09613_consen   80 AKALLALCLYALGDPSWRRY-ADEVLESGA-DPDARALVRALLAR  122 (160)
T ss_pred             HHHHHHHHHHHcCChHHHHH-HHHHHhcCC-ChHHHHHHHHHHHh
Confidence            88888999999999765433 333454443 55565555555443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.43  E-value=0.96  Score=45.42  Aligned_cols=107  Identities=12%  Similarity=0.063  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HcC
Q 008613           69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL----AYD  144 (559)
Q Consensus        69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL----~ld  144 (559)
                      ..+..-..++......-+.++|+.+|++++.+...+..   .......+...+.+|.++.+|.+|-..+.+-.    +.+
T Consensus       108 dtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr---~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~  184 (308)
T KOG1585|consen  108 DTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDR---DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD  184 (308)
T ss_pred             chHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch---HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh
Confidence            34556667777888899999999999999998776543   23334567788999999999999876665443    333


Q ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613          145 --AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS  178 (559)
Q Consensus       145 --P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~  178 (559)
                        +..-+++.-.-.+|+...+|..|..+|+....+.
T Consensus       185 ~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip  220 (308)
T KOG1585|consen  185 AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP  220 (308)
T ss_pred             hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence              3334455555566666779999999999887763

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.39  E-value=0.24  Score=42.10  Aligned_cols=73  Identities=15%  Similarity=0.084  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCCHHHH
Q 008613           90 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--VKALYRRGQAYKDIGRLEEA  167 (559)
Q Consensus        90 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~--~kal~~rG~A~~~lg~~eeA  167 (559)
                      .+..+.+++..+|.+..         +.+.+|.++...|+|++|++.+-.+++.++++  ..+.-.+=.++..+|.-+.-
T Consensus         7 ~~~al~~~~a~~P~D~~---------ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~pl   77 (90)
T PF14561_consen    7 DIAALEAALAANPDDLD---------ARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPL   77 (90)
T ss_dssp             HHHHHHHHHHHSTT-HH---------HHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HH
T ss_pred             cHHHHHHHHHcCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChH
Confidence            46778899999999865         89999999999999999999999999999877  33333333444444443333


Q ss_pred             HHHH
Q 008613          168 VSDL  171 (559)
Q Consensus       168 i~dl  171 (559)
                      +..|
T Consensus        78 v~~~   81 (90)
T PF14561_consen   78 VSEY   81 (90)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=94.24  E-value=0.35  Score=52.78  Aligned_cols=93  Identities=18%  Similarity=0.135  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-HHH
Q 008613           88 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR-LEE  166 (559)
Q Consensus        88 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~-~ee  166 (559)
                      ..-+..|++|+...+.+..         +|.+-.....+-+.|.+--..|.++|.+.|+++..|..-+.-.+..+. .+.
T Consensus        88 ~rIv~lyr~at~rf~~D~~---------lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~s  158 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVK---------LWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIES  158 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHH---------HHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHH
Confidence            3446779999999888765         888887776777779999999999999999999999999888887776 899


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHH
Q 008613          167 AVSDLSNAHEVSPDDGTIADVLR  189 (559)
Q Consensus       167 Ai~dlekAl~l~P~~~~a~~~L~  189 (559)
                      |...+.++|..+|+.+.+|...=
T Consensus       159 aRalflrgLR~npdsp~Lw~eyf  181 (568)
T KOG2396|consen  159 ARALFLRGLRFNPDSPKLWKEYF  181 (568)
T ss_pred             HHHHHHHHhhcCCCChHHHHHHH
Confidence            99999999999999998887543

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.22  E-value=0.057  Score=58.40  Aligned_cols=90  Identities=12%  Similarity=0.091  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hc----CCCCCc----hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKK-NL----QGIHSS----EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL  141 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~-l~----p~~~~~----e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL  141 (559)
                      .-.+.+.|-++|+.+.|.-++.+|.+||+ .+    ......    -...-...++||.|..|+..|++-.|.++|.+++
T Consensus       283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av  362 (696)
T KOG2471|consen  283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV  362 (696)
T ss_pred             heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence            33457788889999999999999999996 21    110000    0122345589999999999999999999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHH
Q 008613          142 AYDAKNVKALYRRGQAYKD  160 (559)
Q Consensus       142 ~ldP~~~kal~~rG~A~~~  160 (559)
                      .....+|..|+|++.|...
T Consensus       363 ~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  363 HVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHHhcCcHHHHHHHHHHHH
Confidence            9999999999999998754

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.21  E-value=0.65  Score=47.27  Aligned_cols=79  Identities=14%  Similarity=-0.028  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      ...+.+.=..+...++++.|..+-.+.+.++|.+|.         -+.-+|.+|.++|.+.-|+++++..++..|+.+.+
T Consensus       181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~---------eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a  251 (269)
T COG2912         181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPY---------EIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA  251 (269)
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChh---------hccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence            334444556788889999999999999999999975         56789999999999999999999999999999887


Q ss_pred             HHHHHHHH
Q 008613          151 LYRRGQAY  158 (559)
Q Consensus       151 l~~rG~A~  158 (559)
                      -.-+....
T Consensus       252 ~~ir~~l~  259 (269)
T COG2912         252 EMIRAQLL  259 (269)
T ss_pred             HHHHHHHH
Confidence            76665543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.19  E-value=1.3  Score=39.82  Aligned_cols=109  Identities=18%  Similarity=0.085  Sum_probs=72.1

Q ss_pred             HHHHHhhCCChHHHHHHHHHHHcc----CcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613           25 CAAEQLTHTPPEEVAEIGEKLANA----SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKN  100 (559)
Q Consensus        25 ~a~e~l~~~~pee~~~~~~~~~~~----~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l  100 (559)
                      ....++.....++.++-+.++...    .+++          .+++.--.+-.+-.+...+.+.|+|++++..-.++|.+
T Consensus        15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eE----------aFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y   84 (144)
T PF12968_consen   15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEE----------AFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY   84 (144)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS-------------HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccCChHh----------hcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            445566667777766666543332    2333          11122223444556778899999999999999999988


Q ss_pred             cCCCC--CchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613          101 LQGIH--SSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY  143 (559)
Q Consensus       101 ~p~~~--~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l  143 (559)
                      +....  ....-.+++.+.++++.++..+|+.++|+..|+.+.+.
T Consensus        85 FNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   85 FNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            76432  22345678889999999999999999999999988753

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.11  E-value=1.2  Score=46.48  Aligned_cols=95  Identities=11%  Similarity=-0.094  Sum_probs=67.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC---HHHHHHH
Q 008613           79 NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-DAKN---VKALYRR  154 (559)
Q Consensus        79 n~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l-dP~~---~kal~~r  154 (559)
                      -.+...|-|++|.+.-++++++++.+.-         +...++.++.-.+++.+++++-.+--.. +..+   ..-|..-
T Consensus       183 FgL~E~g~y~dAEk~A~ralqiN~~D~W---------a~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~  253 (491)
T KOG2610|consen  183 FGLEECGIYDDAEKQADRALQINRFDCW---------ASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT  253 (491)
T ss_pred             hhHHHhccchhHHHHHHhhccCCCcchH---------HHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH
Confidence            3456789999999999999999998832         5555667777789999999987655322 1111   2456667


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHH--hCCCCH
Q 008613          155 GQAYKDIGRLEEAVSDLSNAHE--VSPDDG  182 (559)
Q Consensus       155 G~A~~~lg~~eeAi~dlekAl~--l~P~~~  182 (559)
                      +..|..-+.|+.|+..|.+-+-  +..+|.
T Consensus       254 Al~~iE~aeye~aleIyD~ei~k~l~k~Da  283 (491)
T KOG2610|consen  254 ALFHIEGAEYEKALEIYDREIWKRLEKDDA  283 (491)
T ss_pred             HHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence            8888888999999998876543  334444

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.08  E-value=1.4  Score=45.72  Aligned_cols=124  Identities=16%  Similarity=0.081  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--C-C
Q 008613           69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--D-A  145 (559)
Q Consensus        69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l--d-P  145 (559)
                      ..+..+...+..+.+.|+|..|...+.++..+.+....     ....+.+..+..+...|+..+|+......++.  . .
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~-----~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~  218 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES-----LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKN  218 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC-----CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence            45677889999999999999999999998886532211     01236777888889999999999988888771  1 0


Q ss_pred             -------------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008613          146 -------------------------------KNVKALYRRGQAYKDI------GRLEEAVSDLSNAHEVSPDDGTIADVL  188 (559)
Q Consensus       146 -------------------------------~~~kal~~rG~A~~~l------g~~eeAi~dlekAl~l~P~~~~a~~~L  188 (559)
                                                     ..+++++.+|.-...+      +.+++++..|+.++.++|....++..+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~  298 (352)
T PF02259_consen  219 IDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW  298 (352)
T ss_pred             cccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence                                           1146788888888888      889999999999999999999999988


Q ss_pred             HHHHHHHHh
Q 008613          189 RDAKEILMK  197 (559)
Q Consensus       189 ~~a~~~l~~  197 (559)
                      +.....+-.
T Consensus       299 a~~~~~~~~  307 (352)
T PF02259_consen  299 ALFNDKLLE  307 (352)
T ss_pred             HHHHHHHHH
Confidence            888777643

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.06  E-value=0.33  Score=40.12  Aligned_cols=67  Identities=19%  Similarity=0.214  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY  143 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l  143 (559)
                      +....+.|..+|...+..+|+..++++|+..+..++      +-.++-.+..+|...|+|++.+.+...=+++
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~------rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDRED------RFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566778999999999999999999999998776543      4456777889999999999999987765544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.94  E-value=0.33  Score=49.12  Aligned_cols=116  Identities=11%  Similarity=0.005  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCC--CC
Q 008613           74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA----YDA--KN  147 (559)
Q Consensus        74 lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~----ldP--~~  147 (559)
                      .+...++++..|.|.-.++.|.+.++.+|...        ..+...++.+-++.|+.+.|..+++.+-+    ++-  .+
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~--------p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~  251 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQE--------PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGK  251 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCccc--------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchh
Confidence            34477889999999999999999999874432        34788999999999999999999995543    332  34


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                      .-++.+.+.+|...++|.+|+..|.+++..||.++.+...-..+.--+++
T Consensus       252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~  301 (366)
T KOG2796|consen  252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK  301 (366)
T ss_pred             HHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH
Confidence            56778888889999999999999999999999987665554444444433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.93  E-value=0.12  Score=36.16  Aligned_cols=29  Identities=21%  Similarity=0.320  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613          115 ACSLNSMSCYLKTKQYDECIKVGSEVLAY  143 (559)
Q Consensus       115 ~~~~nlA~~ylklg~y~eAi~~~~~AL~l  143 (559)
                      .++.|+|.+|...|+|++|+..+.+++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            46778888888888888888888888765

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.69  E-value=0.75  Score=49.15  Aligned_cols=107  Identities=10%  Similarity=0.117  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHcCC
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK---TKQYDECIKVGSE-VLAYDA  145 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk---lg~y~eAi~~~~~-AL~ldP  145 (559)
                      .++...+.=-.|-.-.+|+.=|.+.+.. ...|.+.-.  .  ...+.+..|.++.+   .|+.++|+..+.. +....+
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l-~~~p~~~~~--~--~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~  214 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETL-EALPTCDVA--N--QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN  214 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHh-hccCccchh--c--chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC
Confidence            3555566666788888888888777654 333433210  0  12255667777777   8999999999999 455567


Q ss_pred             CCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCC
Q 008613          146 KNVKALYRRGQAYKDI---------GRLEEAVSDLSNAHEVSPDD  181 (559)
Q Consensus       146 ~~~kal~~rG~A~~~l---------g~~eeAi~dlekAl~l~P~~  181 (559)
                      .++..|...|.+|..+         ...++|+.+|+++.+++|+.
T Consensus       215 ~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  215 PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            7899999999999654         24788999999999999764

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.43  E-value=1.2  Score=48.29  Aligned_cols=121  Identities=17%  Similarity=0.129  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCCCc---------------------------------------hhh
Q 008613           71 AKMLKKQGNELYSEGR-FSNALQKYLLAKKNLQGIHSS---------------------------------------EGR  110 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~-y~eAi~~Y~kAL~l~p~~~~~---------------------------------------e~~  110 (559)
                      +..+..-+..+++.|. -++|+.+++.+++..+.+..-                                       ..+
T Consensus       379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~  458 (549)
T PF07079_consen  379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS  458 (549)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence            5556666777777777 566777777777665554321                                       011


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHH
Q 008613          111 TLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD----GTIAD  186 (559)
Q Consensus       111 ~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~----~~a~~  186 (559)
                      +....-...=|..++..|+|.+|..++.=+.++.| ++.+|..+|.++...++|+||..++..   +-|++    ..+..
T Consensus       459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqK  534 (549)
T PF07079_consen  459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQK  534 (549)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHH
Confidence            11111222335667789999999999999999999 999999999999999999999998863   44433    33445


Q ss_pred             HHHHHHHHH
Q 008613          187 VLRDAKEIL  195 (559)
Q Consensus       187 ~L~~a~~~l  195 (559)
                      .+..+++-+
T Consensus       535 Al~lCqKh~  543 (549)
T PF07079_consen  535 ALALCQKHL  543 (549)
T ss_pred             HHHHHHHhh
Confidence            555555544

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.37  E-value=8  Score=41.46  Aligned_cols=103  Identities=15%  Similarity=0.038  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhcCC-CCCchhhhhHHHHHHHHHHHHHH---------cCCHHHHHHH
Q 008613           70 AAKMLKKQGNELYS---EGRFSNALQKYLLAKKNLQG-IHSSEGRTLLLACSLNSMSCYLK---------TKQYDECIKV  136 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k---~g~y~eAi~~Y~kAL~l~p~-~~~~e~~~l~~~~~~nlA~~ylk---------lg~y~eAi~~  136 (559)
                      ........|.++.+   .|+.++|+..+..++..... +++         .|.-+|.+|-.         ...+++||..
T Consensus       178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d---------~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~  248 (374)
T PF13281_consen  178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD---------TLGLLGRIYKDLFLESNFTDRESLDKAIEW  248 (374)
T ss_pred             chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH---------HHHHHHHHHHHHHHHcCccchHHHHHHHHH
Confidence            44555667888888   99999999999996654332 222         44444555433         2347888888


Q ss_pred             HHHHHHcCCCC---------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 008613          137 GSEVLAYDAKN---------------------------------------------VKALYRRGQAYKDIGRLEEAVSDL  171 (559)
Q Consensus       137 ~~~AL~ldP~~---------------------------------------------~kal~~rG~A~~~lg~~eeAi~dl  171 (559)
                      |.++.+++|+.                                             ...+-.+..+..-+++++.|+..+
T Consensus       249 Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~  328 (374)
T PF13281_consen  249 YRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAA  328 (374)
T ss_pred             HHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            88888877643                                             122334556677778999999999


Q ss_pred             HHHHHhCCCC
Q 008613          172 SNAHEVSPDD  181 (559)
Q Consensus       172 ekAl~l~P~~  181 (559)
                      ++++++.|..
T Consensus       329 e~~~~l~~~~  338 (374)
T PF13281_consen  329 EKAFKLKPPA  338 (374)
T ss_pred             HHHhhcCCcc
Confidence            9999988764

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.21  E-value=1.9  Score=48.64  Aligned_cols=104  Identities=18%  Similarity=0.080  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHcC-----CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC
Q 008613           73 MLKKQGNELYSEG-----RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK---QYDECIKVGSEVLAYD  144 (559)
Q Consensus        73 ~lk~~Gn~~~k~g-----~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg---~y~eAi~~~~~AL~ld  144 (559)
                      ....+|.+|++..     ++..|+.+|.++-.+...+           +.+++|.||....   ++..|.++|..|.+. 
T Consensus       290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~-----------a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-  357 (552)
T KOG1550|consen  290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPD-----------AQYLLGVLYETGTKERDYRRAFEYYSLAAKA-  357 (552)
T ss_pred             cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCch-----------HHHHHHHHHHcCCccccHHHHHHHHHHHHHc-
Confidence            3567888888843     7889999999999875544           8899999999876   678999999999854 


Q ss_pred             CCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613          145 AKNVKALYRRGQAYKDI----GRLEEAVSDLSNAHEVSPDDGTIADVLRDA  191 (559)
Q Consensus       145 P~~~kal~~rG~A~~~l----g~~eeAi~dlekAl~l~P~~~~a~~~L~~a  191 (559)
                       .+..++++++.+|..=    .+.+.|+.+|+++.+..  ++.+...++..
T Consensus       358 -G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~  405 (552)
T KOG1550|consen  358 -GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAF  405 (552)
T ss_pred             -CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHH
Confidence             6899999999999743    47899999999999886  33444444443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.17  E-value=0.72  Score=51.02  Aligned_cols=98  Identities=9%  Similarity=-0.103  Sum_probs=74.2

Q ss_pred             cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHH
Q 008613           84 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN----VKALYRRGQAYK  159 (559)
Q Consensus        84 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~----~kal~~rG~A~~  159 (559)
                      ......|.+.........|+..         ..++..|.++...|+.++|++.+++++......    .-+++.++.+|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~---------lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~  316 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSA---------LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM  316 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcH---------HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH
Confidence            3444556666666666655543         377889999999999999999999998644443    347999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008613          160 DIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  190 (559)
Q Consensus       160 ~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~  190 (559)
                      -+.+|++|..+|.+.++.+.-...++..+.-
T Consensus       317 ~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a  347 (468)
T PF10300_consen  317 FQHDWEEAAEYFLRLLKESKWSKAFYAYLAA  347 (468)
T ss_pred             HHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            9999999999999999876554444444433

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.84  E-value=2.2  Score=43.71  Aligned_cols=104  Identities=18%  Similarity=0.150  Sum_probs=77.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcC----C---CC-----
Q 008613           81 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYD----A---KN-----  147 (559)
Q Consensus        81 ~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg-~y~eAi~~~~~AL~ld----P---~~-----  147 (559)
                      ..++|+++.|..+|.|+-.+.+ ....+.....+..+||.|...++.+ +|++|+...++++++-    .   ..     
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e   81 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE   81 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence            4688999999999999988774 2233455678889999999999999 9999999999999872    1   11     


Q ss_pred             --HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhCCCCHHHH
Q 008613          148 --VKALYRRGQAYKDIGRLEE---AVSDLSNAHEVSPDDGTIA  185 (559)
Q Consensus       148 --~kal~~rG~A~~~lg~~ee---Ai~dlekAl~l~P~~~~a~  185 (559)
                        ...+..++.+|...+.++.   |+..++.+-.-.|+.+.+.
T Consensus        82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence              3678888999988887654   3444444444457766554

It is also involved in sporulation [].

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.72  E-value=3.9  Score=42.22  Aligned_cols=89  Identities=8%  Similarity=-0.022  Sum_probs=60.4

Q ss_pred             cHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH---------------------------------
Q 008613           50 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLL---------------------------------   96 (559)
Q Consensus        50 pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~k---------------------------------   96 (559)
                      .+++..+...+...++...+..+....++.+|+..|+++.|...|..                                 
T Consensus       147 ~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~  226 (304)
T COG3118         147 AEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQ  226 (304)
T ss_pred             ccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            34444444555555666666677777888888888888776555322                                 


Q ss_pred             -HHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613           97 -AKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  147 (559)
Q Consensus        97 -AL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~  147 (559)
                       .+.-+|.+         ..+.+.+|..|...|++++|++.+-..++.|-.+
T Consensus       227 ~~~aadPdd---------~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~  269 (304)
T COG3118         227 RRLAADPDD---------VEAALALADQLHLVGRNEAALEHLLALLRRDRGF  269 (304)
T ss_pred             HHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence             11222222         3477889999999999999999998888876654

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.55  E-value=0.7  Score=44.81  Aligned_cols=96  Identities=11%  Similarity=0.069  Sum_probs=73.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHH
Q 008613          112 LLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-GTIADV  187 (559)
Q Consensus       112 l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~-~~a~~~  187 (559)
                      +-......+|..+...+++++|+..+..++..--+.   .-+-.|++.++..+|++++|+..+.....  +.. ..+...
T Consensus        87 Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~el  164 (207)
T COG2976          87 YAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAEL  164 (207)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHH
Confidence            344456678899999999999999999999654432   35678999999999999999998875432  222 345566


Q ss_pred             HHHHHHHHHhhcCCCCCccchh
Q 008613          188 LRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       188 L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      .+++.-..++..+++..|++.+
T Consensus       165 rGDill~kg~k~~Ar~ay~kAl  186 (207)
T COG2976         165 RGDILLAKGDKQEARAAYEKAL  186 (207)
T ss_pred             hhhHHHHcCchHHHHHHHHHHH
Confidence            6788888888888888888776

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=92.07  E-value=2.1  Score=47.71  Aligned_cols=107  Identities=15%  Similarity=-0.011  Sum_probs=86.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCHHHHHHH-
Q 008613           77 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKV-GSEVLAYDAKNVKALYRR-  154 (559)
Q Consensus        77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~-~~~AL~ldP~~~kal~~r-  154 (559)
                      +...+...+....++.....++..+|....         ++.|++.+....|....++.. +..+..+.|++..++..+ 
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  143 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCP---------AVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLI  143 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccch---------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHH
Confidence            455566677788888889999998888765         899999888887776666554 455999999998877777 


Q ss_pred             -----HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613          155 -----GQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  192 (559)
Q Consensus       155 -----G~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~  192 (559)
                           +..+..+++..++..++++++.+.|.++.+...+-...
T Consensus       144 ~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r  186 (620)
T COG3914         144 RFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTAR  186 (620)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHH
Confidence                 99999999999999999999999999977666555553

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=92.02  E-value=0.37  Score=53.41  Aligned_cols=101  Identities=13%  Similarity=0.076  Sum_probs=85.8

Q ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008613           74 LKKQGNELY-SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  152 (559)
Q Consensus        74 lk~~Gn~~~-k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~  152 (559)
                      +...+-.|+ .+|+..+|+.+|..++.+.+.+..       ..++.-+|.++.+.|...+|--.+..|+.--|....-+|
T Consensus       215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~k-------di~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y  287 (886)
T KOG4507|consen  215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNK-------DIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYY  287 (886)
T ss_pred             HHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccc-------cchhhhHHHHHHHcccccchhheeehhccCCccccccce
Confidence            444444444 478999999999999999887643       457888999999999999998888899887777777799


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613          153 RRGQAYKDIGRLEEAVSDLSNAHEVSPDD  181 (559)
Q Consensus       153 ~rG~A~~~lg~~eeAi~dlekAl~l~P~~  181 (559)
                      .++.+|..++.|...+..|..+.+..|..
T Consensus       288 ~l~~i~aml~~~N~S~~~ydha~k~~p~f  316 (886)
T KOG4507|consen  288 TLGNIYAMLGEYNHSVLCYDHALQARPGF  316 (886)
T ss_pred             eHHHHHHHHhhhhhhhhhhhhhhccCcch
Confidence            99999999999999999999999998865

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.86  E-value=1.5  Score=45.07  Aligned_cols=69  Identities=16%  Similarity=0.161  Sum_probs=64.5

Q ss_pred             hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613          109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  177 (559)
Q Consensus       109 ~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l  177 (559)
                      ..++...++..++..+...++++.++...++.+.++|-+...|+++=.+|...|+...|+..|++.-.+
T Consensus       148 l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         148 LEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            456678899999999999999999999999999999999999999999999999999999999988774

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.65  E-value=1.3  Score=44.85  Aligned_cols=110  Identities=8%  Similarity=-0.084  Sum_probs=88.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008613           80 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDAKNVKALYRRGQAY  158 (559)
Q Consensus        80 ~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg-~y~eAi~~~~~AL~ldP~~~kal~~rG~A~  158 (559)
                      .+.+..+-..|+.+-..+|.++|.+-.         +|..|-.|+..++ +..+-+++.+++++-+|.|...|+.|-.+.
T Consensus        52 I~~~~E~S~RAl~LT~d~i~lNpAnYT---------VW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~iv  122 (318)
T KOG0530|consen   52 IIAKNEKSPRALQLTEDAIRLNPANYT---------VWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIV  122 (318)
T ss_pred             HHhccccCHHHHHHHHHHHHhCcccch---------HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHH
Confidence            345566678899999999999998855         6777777776665 578888999999999999999999999999


Q ss_pred             HHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613          159 KDIGRLE-EAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  198 (559)
Q Consensus       159 ~~lg~~e-eAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~  198 (559)
                      ..+|++. .-+...+..+..+..+--+|+...-+....+..
T Consensus       123 e~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~  163 (318)
T KOG0530|consen  123 ELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDY  163 (318)
T ss_pred             HHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhH
Confidence            9999888 888888999988887766776666555555443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=91.56  E-value=9.4  Score=43.63  Aligned_cols=139  Identities=14%  Similarity=0.093  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHhH-H---hHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc
Q 008613           53 IATMRARIDAQMN-Y---EFNAAKMLKKQGNELY-SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT  127 (559)
Q Consensus        53 ~~aa~~~l~~~~~-~---~~~~a~~lk~~Gn~~~-k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl  127 (559)
                      |+.+...++...+ +   -...+......|..++ ...++++|..+..|++.+....   ...+++..+.+-++.+|.+.
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~---~~~d~k~~~~~ll~~i~~~~  113 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERH---RLTDLKFRCQFLLARIYFKT  113 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHHHHHHhc
Confidence            3445566666552 2   2335888888999988 7899999999999999997762   34566666777889999988


Q ss_pred             CCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHH
Q 008613          128 KQYDECIKVGSEVLAYDAK----NVKALYRRGQAYK--DIGRLEEAVSDLSNAHEVS--PDDGTIADVLRDAKEIL  195 (559)
Q Consensus       128 g~y~eAi~~~~~AL~ldP~----~~kal~~rG~A~~--~lg~~eeAi~dlekAl~l~--P~~~~a~~~L~~a~~~l  195 (559)
                      +... |+..++++|+..-+    .+..++++-.+..  ..+++..|+..++....+.  ..++.+.-.+......+
T Consensus       114 ~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l  188 (608)
T PF10345_consen  114 NPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL  188 (608)
T ss_pred             CHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence            8777 99999999987554    4455555543322  2368999999999998876  45655544444443333

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.46  E-value=0.43  Score=33.13  Aligned_cols=31  Identities=39%  Similarity=0.498  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613          148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVS  178 (559)
Q Consensus       148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~  178 (559)
                      ..++.++|.+|...|+|++|+..+++++.+.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            3578999999999999999999999999863

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=91.15  E-value=9.1  Score=40.92  Aligned_cols=105  Identities=9%  Similarity=0.019  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-----CC-------C---------CchhhhhHHHHHHHHHHHHHHcCC
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ-----GI-------H---------SSEGRTLLLACSLNSMSCYLKTKQ  129 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p-----~~-------~---------~~e~~~l~~~~~~nlA~~ylklg~  129 (559)
                      ++.+...+.++..+|++..|.++.++||=...     ..       .         ..+.+.+ -.+++.......+.|.
T Consensus        40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~f-flal~r~i~~L~~RG~  118 (360)
T PF04910_consen   40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQF-FLALFRYIQSLGRRGC  118 (360)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHH-HHHHHHHHHHHHhcCc
Confidence            89999999999999999999999988873332     11       0         0123333 3455666788889999


Q ss_pred             HHHHHHHHHHHHHcCCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613          130 YDECIKVGSEVLAYDAK-NV-KALYRRGQAYKDIGRLEEAVSDLSNAHE  176 (559)
Q Consensus       130 y~eAi~~~~~AL~ldP~-~~-kal~~rG~A~~~lg~~eeAi~dlekAl~  176 (559)
                      |..|++.|.-.+.+||. ++ -+++.+-......++|+--+..++....
T Consensus       119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence            99999999999999998 65 4566666666777888888877776554

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.11  E-value=2.2  Score=45.74  Aligned_cols=99  Identities=16%  Similarity=0.161  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD------  144 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld------  144 (559)
                      -..+.+.|..|+.-|+++.|++.|.++-.++.....      .+..|.|+-.+-..+++|.....+..+|...-      
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh------vInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~  223 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH------VINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENL  223 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH------HHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhH
Confidence            455778999999999999999999997776544322      45678888888888999999999888887651      


Q ss_pred             -C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008613          145 -A-KNVKALYRRGQAYKDIGRLEEAVSDLSNAH  175 (559)
Q Consensus       145 -P-~~~kal~~rG~A~~~lg~~eeAi~dlekAl  175 (559)
                       + -.++..+.-|.+++.+++|..|+++|-.+.
T Consensus       224 ~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  224 AQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             HHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence             0 124678888999999999999999986553

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=91.02  E-value=2.4  Score=42.70  Aligned_cols=69  Identities=16%  Similarity=0.217  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL  141 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL  141 (559)
                      ........|..|+..|+|++|+++|+.+......+.-   ..+...++..+..|+.++|+.+..+..+-+++
T Consensus       177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW---~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGW---WSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            3455668999999999999999999999766554443   45677788899999999999999999887765

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.02  E-value=3  Score=39.35  Aligned_cols=84  Identities=13%  Similarity=0.014  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613          114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  193 (559)
Q Consensus       114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~  193 (559)
                      ...+..+..+-++.++.+++...+..+--+.|+.+.....-|..+...|+|.+|+..|+.+..-.|..+.....+..+..
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            34566777788888999999999999999999999999999999999999999999999998888888888888888877


Q ss_pred             HHHh
Q 008613          194 ILMK  197 (559)
Q Consensus       194 ~l~~  197 (559)
                      .+++
T Consensus        90 ~~~D   93 (160)
T PF09613_consen   90 ALGD   93 (160)
T ss_pred             HcCC
Confidence            6654

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=90.92  E-value=1  Score=46.18  Aligned_cols=68  Identities=15%  Similarity=0.124  Sum_probs=59.6

Q ss_pred             hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613          109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE  176 (559)
Q Consensus       109 ~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~  176 (559)
                      ...++..++...+..|++.|.|.+|+..+.++++++|-+...+..+=..|..+|+--++++.|++.-+
T Consensus       274 le~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         274 LEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            45666677777899999999999999999999999999999999999999999998888888876543

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=90.68  E-value=6.1  Score=40.17  Aligned_cols=107  Identities=19%  Similarity=0.071  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC-------CHHHHHHHHHH
Q 008613           71 AKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-------QYDECIKVGSE  139 (559)
Q Consensus        71 a~~lk~~Gn~~~k----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg-------~y~eAi~~~~~  139 (559)
                      +.....+|..|..    ..++.+|...|.+|........        ..+.++++.+|..-.       +...|+..|.+
T Consensus       109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a--------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~  180 (292)
T COG0790         109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA--------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRK  180 (292)
T ss_pred             HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH--------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHH
Confidence            4566778888877    5699999999999998633321        224778888887752       23379999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613          140 VLAYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLR  189 (559)
Q Consensus       140 AL~ldP~~~kal~~rG~A~~~----lg~~eeAi~dlekAl~l~P~~~~a~~~L~  189 (559)
                      +....  ++.+.+++|.+|..    -.++++|+.+|+++.+...  ......++
T Consensus       181 aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         181 AAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG  230 (292)
T ss_pred             HHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence            88775  89999999988854    3489999999999998765  55555555

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=90.61  E-value=1.1  Score=38.00  Aligned_cols=57  Identities=21%  Similarity=0.310  Sum_probs=46.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613          123 CYLKTKQYDECIKVGSEVLAYDAK---------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  179 (559)
Q Consensus       123 ~ylklg~y~eAi~~~~~AL~ldP~---------~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P  179 (559)
                      -.++.++|.+|++.+.+.+.....         ...++.+++..+...|++++|+..+++++.+..
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            345789999998888887765321         246789999999999999999999999999854

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=90.58  E-value=34  Score=40.30  Aligned_cols=109  Identities=18%  Similarity=0.126  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-
Q 008613           69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-  147 (559)
Q Consensus        69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~-  147 (559)
                      ..+.-....+-......+|++|-.+..++....+.-.......+.+....-+|.+....+++++|++.++.++..-|.+ 
T Consensus       413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~  492 (894)
T COG2909         413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA  492 (894)
T ss_pred             hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence            3455666788888999999999998888777665532233345555666667888888999999999999999987765 


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613          148 ----VKALYRRGQAYKDIGRLEEAVSDLSNAHEV  177 (559)
Q Consensus       148 ----~kal~~rG~A~~~lg~~eeAi~dlekAl~l  177 (559)
                          ..++...|.+..-.|++++|......+.+.
T Consensus       493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~  526 (894)
T COG2909         493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQM  526 (894)
T ss_pred             chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence                578999999999999999999999888877

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.45  E-value=17  Score=40.09  Aligned_cols=102  Identities=21%  Similarity=0.161  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613           68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  147 (559)
Q Consensus        68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~  147 (559)
                      ...+....-+|.....-+.|+.|...|..|.++...      .++.+.|-.|+|..|++.++-+.   .|.-.=.+.|.|
T Consensus       364 ~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------~dl~a~~nlnlAi~YL~~~~~ed---~y~~ld~i~p~n  434 (629)
T KOG2300|consen  364 AHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------IDLQAFCNLNLAISYLRIGDAED---LYKALDLIGPLN  434 (629)
T ss_pred             HhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------HHHHHHHHHhHHHHHHHhccHHH---HHHHHHhcCCCC
Confidence            345777888999999999999999999999987433      45678899999999999766443   333233345653


Q ss_pred             ----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613          148 ----------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVS  178 (559)
Q Consensus       148 ----------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~  178 (559)
                                ..++|..|.-.+..+++.||...+++.++..
T Consensus       435 t~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  435 TNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence                      3578889999999999999999999999986

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.26  E-value=0.43  Score=33.86  Aligned_cols=29  Identities=21%  Similarity=0.257  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613          149 KALYRRGQAYKDIGRLEEAVSDLSNAHEV  177 (559)
Q Consensus       149 kal~~rG~A~~~lg~~eeAi~dlekAl~l  177 (559)
                      .+|.++|.+-...++|++|+.||+++|++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45677777777777777777777777765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=90.21  E-value=6.2  Score=45.82  Aligned_cols=107  Identities=16%  Similarity=0.094  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hcCCCCCc----hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKK-------NLQGIHSS----EGRTLLLACSLNSMSCYLKTKQYDECIKVGSE  139 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~-------l~p~~~~~----e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~  139 (559)
                      -..+++.+..+-.+++...|+++|.|+-.       +..++|..    -.+.-...+|..-|+.+...|+.+.|+.+|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            34577888888888999999999987531       11222210    01111225777889999999999999999998


Q ss_pred             HHHc---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613          140 VLAY---------------------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  177 (559)
Q Consensus       140 AL~l---------------------dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l  177 (559)
                      |-..                     ...+..+.|.+|.-|.+.|++.+|+..|.+|-..
T Consensus       938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            8643                     3356678999999999999999999999887543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=90.13  E-value=2.5  Score=47.73  Aligned_cols=37  Identities=8%  Similarity=0.086  Sum_probs=18.9

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG  103 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~  103 (559)
                      .+..++...+.|..+-...-|.++.+.|.+.+.+++.
T Consensus       507 riaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~  543 (835)
T KOG2047|consen  507 RIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW  543 (835)
T ss_pred             hcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence            3334444555555555555555555555555555443

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.95  E-value=13  Score=40.95  Aligned_cols=127  Identities=12%  Similarity=0.033  Sum_probs=100.1

Q ss_pred             HHHccCcHHHHHHHHHHHHHhHHhHH---HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Q 008613           44 KLANASPEEIATMRARIDAQMNYEFN---AAKMLKKQGNEL-YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLN  119 (559)
Q Consensus        44 ~~~~~~pee~~aa~~~l~~~~~~~~~---~a~~lk~~Gn~~-~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~n  119 (559)
                      ......|..|+.+..++++.+++.+.   .+......|..+ +-.++++.|...+++|+.+....|.-  .+++-..+.-
T Consensus        16 ~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f--ydvKf~a~Sl   93 (629)
T KOG2300|consen   16 HFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF--YDVKFQAASL   93 (629)
T ss_pred             HHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH--HhhhhHHHHH
Confidence            34456788888888899888885333   466666777765 45788999999999999998887753  2556667888


Q ss_pred             HHHHHHHcC-CHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHH
Q 008613          120 SMSCYLKTK-QYDECIKVGSEVLAYDAKNV----KALYRRGQAYKDIGRLEEAVSDLS  172 (559)
Q Consensus       120 lA~~ylklg-~y~eAi~~~~~AL~ldP~~~----kal~~rG~A~~~lg~~eeAi~dle  172 (559)
                      ++.||.... .+..+....+++|++....+    +.++.++..+.--.+|.-|++.+.
T Consensus        94 La~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa  151 (629)
T KOG2300|consen   94 LAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA  151 (629)
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence            999999888 78999999999999976654    667788888888899998887753

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.52  E-value=13  Score=40.06  Aligned_cols=105  Identities=11%  Similarity=-0.021  Sum_probs=85.0

Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008613           82 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK--QYDECIKVGSEVLAYDAKNVKALYRRGQAYK  159 (559)
Q Consensus        82 ~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg--~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~  159 (559)
                      .+..-+++-+.+-..+|..+|....         +|+.|..++.+..  +|..-++.|.+++++||.|..+|..|-.++.
T Consensus        86 ek~~~ld~eL~~~~~~L~~npksY~---------aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~  156 (421)
T KOG0529|consen   86 EKQALLDEELKYVESALKVNPKSYG---------AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVE  156 (421)
T ss_pred             HHHHhhHHHHHHHHHHHHhCchhHH---------HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHH
Confidence            3334567778888899999998765         9999999998776  4789999999999999999998877766665


Q ss_pred             HcCC----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          160 DIGR----LEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       160 ~lg~----~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                      ....    ..+-+....+++.-++.|-.+|.....+...+
T Consensus       157 ~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l  196 (421)
T KOG0529|consen  157 QAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTL  196 (421)
T ss_pred             HHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence            4433    57788888999988888888888777776655

>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function

Probab=89.36  E-value=1.1  Score=37.57  Aligned_cols=56  Identities=11%  Similarity=0.345  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhcc-----CCHHHHHHHHHH
Q 008613          459 PAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSS-----LSLNDLDRMMLW  514 (559)
Q Consensus       459 p~~~~m~~~mmk~m~p~~~~~m~~~~g~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~  514 (559)
                      +=++++...=++++|++.+-.-|+|+|++++++||++..+-|+.     ..+++-.++.+=
T Consensus         2 ~i~qqiVn~Kln~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llke   62 (85)
T PF11116_consen    2 KIIQQIVNQKLNNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKE   62 (85)
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence            34778888889999999999999999999999999999998875     455666655553

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=88.86  E-value=14  Score=39.59  Aligned_cols=113  Identities=14%  Similarity=0.146  Sum_probs=81.9

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHH---HHHHHc
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG---SEVLAY  143 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~---~~AL~l  143 (559)
                      .+.-+-....-+..||+.|+..++-..+..+++..|.-              .++.+|....--+.++.-+   .++..+
T Consensus       259 ~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--------------~ia~lY~~ar~gdta~dRlkRa~~L~sl  324 (531)
T COG3898         259 APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--------------DIALLYVRARSGDTALDRLKRAKKLESL  324 (531)
T ss_pred             CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--------------HHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence            33444455556778999999999999999999876653              2344444444444444444   445567


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          144 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       144 dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                      .|+|....+.++.+-+.-|+|..|....+.+....|.. .+.-.+..+.+.
T Consensus       325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeA  374 (531)
T COG3898         325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEA  374 (531)
T ss_pred             CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhh
Confidence            89999999999999999999999999999999999875 345555555443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=87.56  E-value=6.7  Score=41.09  Aligned_cols=90  Identities=7%  Similarity=-0.075  Sum_probs=70.4

Q ss_pred             HHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008613           92 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK------------QYDECIKVGSEVLAYDAKNVKALYRRGQAYK  159 (559)
Q Consensus        92 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg------------~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~  159 (559)
                      ..|.+.++-+|.+.+         .|..+...--.+-            -.+..+..|++||+.+|++.+.+..+=.+..
T Consensus         6 ~el~~~v~~~P~di~---------~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~   76 (321)
T PF08424_consen    6 AELNRRVRENPHDIE---------AWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGE   76 (321)
T ss_pred             HHHHHHHHhCcccHH---------HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            457777887777754         5555544333332            2567788999999999999999988888888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008613          160 DIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  190 (559)
Q Consensus       160 ~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~  190 (559)
                      .....++..+-+++++..+|++..+|..+-.
T Consensus        77 ~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~  107 (321)
T PF08424_consen   77 KVWDSEKLAKKWEELLFKNPGSPELWREYLD  107 (321)
T ss_pred             HhCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            9999999999999999999999888875543

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.55  E-value=3.8  Score=33.65  Aligned_cols=30  Identities=20%  Similarity=0.192  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKN  100 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l  100 (559)
                      +..+...+..+-+.|+|.+||.+|.+++++
T Consensus         6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           6 ARKYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            455556666667777777777777666653

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.45  E-value=0.84  Score=32.40  Aligned_cols=28  Identities=11%  Similarity=0.043  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613          116 CSLNSMSCYLKTKQYDECIKVGSEVLAY  143 (559)
Q Consensus       116 ~~~nlA~~ylklg~y~eAi~~~~~AL~l  143 (559)
                      +|..+|.+.+...+|+.|+.+|.++|++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            7889999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.19  E-value=4  Score=44.40  Aligned_cols=119  Identities=12%  Similarity=0.182  Sum_probs=70.0

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC------chhhhhHHHHHHHHHHHHHHc--CCH-----HHH
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSMSCYLKT--KQY-----DEC  133 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~------~e~~~l~~~~~~nlA~~ylkl--g~y-----~eA  133 (559)
                      .+.........|-.++..|+|.+|+..|+.+|...|-..-      .+.+++...|.-.+-.+-+++  +..     ++.
T Consensus       200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~  279 (422)
T PF06957_consen  200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ  279 (422)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence            3344555666899999999999999999999988664321      134455555544433333322  221     122


Q ss_pred             HHHHHHH-----HHcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008613          134 IKVGSEV-----LAYDAKNVKALYRRGQAY-KDIGRLEEAVSDLSNAHEVSPDDGTIA  185 (559)
Q Consensus       134 i~~~~~A-----L~ldP~~~kal~~rG~A~-~~lg~~eeAi~dlekAl~l~P~~~~a~  185 (559)
                      .+.++-+     ++|.|.+...-+|.|... +++++|.-|....++.|++.|..+.+.
T Consensus       280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~  337 (422)
T PF06957_consen  280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAE  337 (422)
T ss_dssp             HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHH
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHH
Confidence            1222221     244565555555666655 588999999999999999999876443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.98  E-value=3.3  Score=46.65  Aligned_cols=71  Identities=18%  Similarity=0.104  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008613          114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI  184 (559)
Q Consensus       114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~------~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a  184 (559)
                      ..++.|-|.-+++.++|..+++.|...++.-|.      .+|....++.||+.+.+.+.|++.++.|-+.+|.++-.
T Consensus       354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~  430 (872)
T KOG4814|consen  354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLC  430 (872)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHH
Confidence            346667888899999999999999999987664      36888999999999999999999999999999987643

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=86.87  E-value=1.2  Score=46.18  Aligned_cols=87  Identities=13%  Similarity=0.031  Sum_probs=73.7

Q ss_pred             HHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHH
Q 008613           94 YLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR-RGQAYKDIGRLEEAVSDLS  172 (559)
Q Consensus        94 Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~-rG~A~~~lg~~eeAi~dle  172 (559)
                      |.++-...+.++.         +|...+....+.+-|.+-...|.+++++.|.|+..|.. -+.-|...++++.+...+.
T Consensus        96 ~~R~tnkff~D~k---------~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~  166 (435)
T COG5191          96 LYRSTNKFFNDPK---------IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFL  166 (435)
T ss_pred             eehhhhcCCCCcH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHH
Confidence            5556666677765         88888888888899999999999999999999988776 5566788899999999999


Q ss_pred             HHHHhCCCCHHHHHHHH
Q 008613          173 NAHEVSPDDGTIADVLR  189 (559)
Q Consensus       173 kAl~l~P~~~~a~~~L~  189 (559)
                      +++.++|+.+.+|...=
T Consensus       167 ~glR~N~~~p~iw~eyf  183 (435)
T COG5191         167 KGLRMNSRSPRIWIEYF  183 (435)
T ss_pred             hhhccCCCCchHHHHHH
Confidence            99999999998887543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=86.52  E-value=5.2  Score=39.15  Aligned_cols=71  Identities=14%  Similarity=0.043  Sum_probs=53.8

Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613           58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  134 (559)
Q Consensus        58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi  134 (559)
                      .-++......+..++....+|..|. ..+..+|+.+|.++|++.+.+.     .+...++..++.+|.++++|+.|-
T Consensus       128 ~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~-----~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  128 RFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDD-----NFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCC-----CCCHHHHHHHHHHHHHhcchhhhh
Confidence            3334444456667888888887776 5778999999999999977652     234568889999999999998874

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.48  E-value=25  Score=32.83  Aligned_cols=110  Identities=11%  Similarity=-0.033  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      ...+.+.........+++++.......=-+.|..+.         +-.--+.+|...|+|.+|+..++.+.+-.+..+-+
T Consensus        10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e---------~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~   80 (153)
T TIGR02561        10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKE---------LDMFDGWLLIARGNYDEAARILRELLSSAGAPPYG   80 (153)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccc---------cchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHH
Confidence            444555556666688999988888777777788776         55667889999999999999999999888888888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  191 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a  191 (559)
                      --.++.|+..+|+.+-=.-.. .++.-+ .++++...++.+
T Consensus        81 kAL~A~CL~al~Dp~Wr~~A~-~~le~~-~~~~a~~Lv~al  119 (153)
T TIGR02561        81 KALLALCLNAKGDAEWHVHAD-EVLARD-ADADAVALVRAL  119 (153)
T ss_pred             HHHHHHHHHhcCChHHHHHHH-HHHHhC-CCHhHHHHHHHH
Confidence            888899999999865533222 233333 344444444443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=86.45  E-value=28  Score=39.71  Aligned_cols=120  Identities=9%  Similarity=-0.037  Sum_probs=95.4

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC---c-h----hhhh--HHHHHHHHHHHHHHcCCHHHHHH
Q 008613           66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS---S-E----GRTL--LLACSLNSMSCYLKTKQYDECIK  135 (559)
Q Consensus        66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~---~-e----~~~l--~~~~~~nlA~~ylklg~y~eAi~  135 (559)
                      +....+..|.+-|..-++..+++.|+.+..+|..+ |..+.   . .    ...+  -..+|.-.+......|-++.+..
T Consensus       420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~  498 (835)
T KOG2047|consen  420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA  498 (835)
T ss_pred             chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence            45566889999999999999999999999999864 44322   0 0    0000  22467777788888899999999


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHH
Q 008613          136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP--DDGTIAD  186 (559)
Q Consensus       136 ~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P--~~~~a~~  186 (559)
                      .|+++|.|.---|....+.|.-+.....++++.+.|++.+.+.+  .-.++|.
T Consensus       499 vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~  551 (835)
T KOG2047|consen  499 VYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN  551 (835)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence            99999999888899999999999999999999999999999975  3345554

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=86.31  E-value=25  Score=35.97  Aligned_cols=89  Identities=11%  Similarity=-0.024  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 008613           87 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD-ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE  165 (559)
Q Consensus        87 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~-eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~e  165 (559)
                      ..+-+++.++.++-+|.+-.         +|..|-.+...+|++. .-++.+..+|..|..|..+|..|--++...+.|+
T Consensus        94 L~~El~~l~eI~e~npKNYQ---------vWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~  164 (318)
T KOG0530|consen   94 LNKELEYLDEIIEDNPKNYQ---------VWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYE  164 (318)
T ss_pred             HHHHHHHHHHHHHhCccchh---------HHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHH
Confidence            34456667777776666644         7777777777777777 7777888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhCCCCHHH
Q 008613          166 EAVSDLSNAHEVSPDDGTI  184 (559)
Q Consensus       166 eAi~dlekAl~l~P~~~~a  184 (559)
                      .-+......|+.|-.|..+
T Consensus       165 ~EL~y~~~Lle~Di~NNSA  183 (318)
T KOG0530|consen  165 DELAYADELLEEDIRNNSA  183 (318)
T ss_pred             HHHHHHHHHHHHhhhccch
Confidence            8887777777766544333

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=86.24  E-value=2  Score=46.88  Aligned_cols=89  Identities=17%  Similarity=0.081  Sum_probs=47.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008613           81 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD  160 (559)
Q Consensus        81 ~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~  160 (559)
                      .+..|+.-.|-.....+|+..|.+|.         ...-++.++..+|.|+.+..+..-+-.+--.-.++..-+-..+..
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p~---------~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~  369 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDPV---------LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHG  369 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCch---------hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhc
Confidence            34455555555556666665555554         333445555666666666655554444433334444444455556


Q ss_pred             cCCHHHHHHHHHHHHHhC
Q 008613          161 IGRLEEAVSDLSNAHEVS  178 (559)
Q Consensus       161 lg~~eeAi~dlekAl~l~  178 (559)
                      +++|++|....+..+.-.
T Consensus       370 l~r~~~a~s~a~~~l~~e  387 (831)
T PRK15180        370 LARWREALSTAEMMLSNE  387 (831)
T ss_pred             hhhHHHHHHHHHHHhccc
Confidence            666666665555554433

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=86.19  E-value=21  Score=38.58  Aligned_cols=118  Identities=11%  Similarity=-0.031  Sum_probs=84.7

Q ss_pred             HHHHHcCCHH-HHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008613           79 NELYSEGRFS-NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS-----CYLKTKQYDECIKVGSEVLAYDAKNVKALY  152 (559)
Q Consensus        79 n~~~k~g~y~-eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~-----~ylklg~y~eAi~~~~~AL~ldP~~~kal~  152 (559)
                      ....+.|.|+ +++.+=.+.+..+|....  ..++...++..+-.     -..+..-+++-+.+...+|+.+|+...+|+
T Consensus        36 ~~~r~~~~yd~e~l~lt~~ll~~npe~~t--~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~  113 (421)
T KOG0529|consen   36 QKKREAKEYDEEHLELTSELLEKNPEFYT--VWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWH  113 (421)
T ss_pred             HHHHhccccchHHHHHHHHHHhhCchhhh--hhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHH
Confidence            3444556664 477777777777776532  22222223333333     333444677778888999999999999999


Q ss_pred             HHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613          153 RRGQAYKDIGR--LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  198 (559)
Q Consensus       153 ~rG~A~~~lg~--~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~  198 (559)
                      .|..++.....  |..-+..+++++++||.+-..|...+.+-....+.
T Consensus       114 hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~  161 (421)
T KOG0529|consen  114 HRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS  161 (421)
T ss_pred             HHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence            99999997765  68899999999999999988888888777666443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=86.01  E-value=4.5  Score=39.96  Aligned_cols=83  Identities=17%  Similarity=0.021  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-H
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV-K  149 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~-k  149 (559)
                      +-.++.+++......=+..|++.|.+++....... ....  ...+.+-+|.++.++|++++|++.+.+++...-.+. .
T Consensus       125 AWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~-~~~~--~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~  201 (214)
T PF09986_consen  125 AWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPI-EGMD--EATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEP  201 (214)
T ss_pred             HHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCC-CCch--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcH
Confidence            44444444444444446778888888887644311 1112  234788899999999999999999999996533222 2


Q ss_pred             HHHHHHH
Q 008613          150 ALYRRGQ  156 (559)
Q Consensus       150 al~~rG~  156 (559)
                      .+..++.
T Consensus       202 ~l~~~AR  208 (214)
T PF09986_consen  202 KLKDMAR  208 (214)
T ss_pred             HHHHHHH
Confidence            4444443

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=85.96  E-value=13  Score=37.15  Aligned_cols=115  Identities=14%  Similarity=0.095  Sum_probs=71.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHhcCCCCCc---hhhhhHHHHHHHHHHHHHHcCC-HHHHH-HHHHHHHH-c-CCCCH--HHH
Q 008613           81 LYSEGRFSNALQKYLLAKKNLQGIHSS---EGRTLLLACSLNSMSCYLKTKQ-YDECI-KVGSEVLA-Y-DAKNV--KAL  151 (559)
Q Consensus        81 ~~k~g~y~eAi~~Y~kAL~l~p~~~~~---e~~~l~~~~~~nlA~~ylklg~-y~eAi-~~~~~AL~-l-dP~~~--kal  151 (559)
                      +|..|+|+.|++....||+..-..|+.   ..-.+.+.-.+.-+....+.|+ ++-.. ..+..+.. . -|+.+  |.|
T Consensus        93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~  172 (230)
T PHA02537         93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY  172 (230)
T ss_pred             eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence            678999999999999999987666642   2233344444455555556665 22222 11222211 1 14444  455


Q ss_pred             HHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613          152 YRRGQAYK---------DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  196 (559)
Q Consensus       152 ~~rG~A~~---------~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~  196 (559)
                      ...|.+++         ..++...|+..|++|+.++|+- .+...+..+..+++
T Consensus       173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~lr  225 (230)
T PHA02537        173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRLK  225 (230)
T ss_pred             HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHh
Confidence            55566663         4567889999999999999764 35555666666664

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=85.91  E-value=6.6  Score=39.40  Aligned_cols=62  Identities=11%  Similarity=-0.134  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008613           90 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD  160 (559)
Q Consensus        90 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~  160 (559)
                      |+.+|.+|+.+.|....         .|+.+|.++...+++=.|+-+|.+++-..-..+.+.-++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~---------p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGN---------PYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSH---------HHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCC---------cccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78899999999999876         899999999999999999999999997766678888888888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.90  E-value=12  Score=42.19  Aligned_cols=111  Identities=17%  Similarity=0.151  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHh-----cCCCCCchhhhhHHHHHHHHHHHHHHcC-----CHHHHHH
Q 008613           71 AKMLKKQGNELYS-----EGRFSNALQKYLLAKKN-----LQGIHSSEGRTLLLACSLNSMSCYLKTK-----QYDECIK  135 (559)
Q Consensus        71 a~~lk~~Gn~~~k-----~g~y~eAi~~Y~kAL~l-----~p~~~~~e~~~l~~~~~~nlA~~ylklg-----~y~eAi~  135 (559)
                      +......|.+++.     ..+.+.|+.+|..+..-     ...++.         +.+.+|.||.+..     ++..|+.
T Consensus       244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~---------a~~~lg~~Y~~g~~~~~~d~~~A~~  314 (552)
T KOG1550|consen  244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPP---------AQYGLGRLYLQGLGVEKIDYEKALK  314 (552)
T ss_pred             hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCc---------cccHHHHHHhcCCCCccccHHHHHH
Confidence            4445556666554     47899999999998771     011222         6788999999854     6788999


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          136 VGSEVLAYDAKNVKALYRRGQAYKDIG---RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       136 ~~~~AL~ldP~~~kal~~rG~A~~~lg---~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                      .|.++-.+  +++.+.+++|.+|..-.   ++..|+.+|..|...  .+..+...+..+...
T Consensus       315 ~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~  372 (552)
T KOG1550|consen  315 LYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL  372 (552)
T ss_pred             HHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence            99999866  57889999999998655   578999999988764  555666666665443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=85.62  E-value=15  Score=42.90  Aligned_cols=95  Identities=17%  Similarity=0.143  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH----------
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV----------  140 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~A----------  140 (559)
                      .+++-.+-..|...|.|++|++.-..--++   +        +-..|||.|.-+...++.+.|+++|+++          
T Consensus       826 ckR~DLlNKlyQs~g~w~eA~eiAE~~DRi---H--------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rm  894 (1416)
T KOG3617|consen  826 CKRYDLLNKLYQSQGMWSEAFEIAETKDRI---H--------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRM  894 (1416)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHhhccce---e--------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHH
Confidence            334434444566667777776643322111   1        2347889999888999999999999875          


Q ss_pred             HHcCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613          141 LAYDAK----------NVKALYRRGQAYKDIGRLEEAVSDLSNAHE  176 (559)
Q Consensus       141 L~ldP~----------~~kal~~rG~A~~~lg~~eeAi~dlekAl~  176 (559)
                      |.-+|.          +.+.|.+-|+-+...|+.+.|+..|+.|-.
T Consensus       895 L~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D  940 (1416)
T KOG3617|consen  895 LKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD  940 (1416)
T ss_pred             HHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence            233443          346778889999999999999999988754

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=84.58  E-value=9.1  Score=40.92  Aligned_cols=103  Identities=19%  Similarity=0.019  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG-IHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--  146 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~-~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~--  146 (559)
                      --..+......+.++|-|..|++..+-.+.++|. ||-        -+++-+=...++.++|+--|+.++........  
T Consensus       102 fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~--------g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~  173 (360)
T PF04910_consen  102 FFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL--------GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNW  173 (360)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc--------hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhh
Confidence            3455666777889999999999999999999999 663        25556666777889999999988877653221  


Q ss_pred             ---CHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCC
Q 008613          147 ---NVKALYRRGQAYKDIGRL---------------EEAVSDLSNAHEVSPD  180 (559)
Q Consensus       147 ---~~kal~~rG~A~~~lg~~---------------eeAi~dlekAl~l~P~  180 (559)
                         -|-.-|.++.|+..+++-               ++|...+.+|+...|.
T Consensus       174 ~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  174 LSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             hhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence               235678899999999998               8999999999998875

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=84.01  E-value=3.3  Score=41.60  Aligned_cols=62  Identities=11%  Similarity=-0.083  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                      |+.+|.+|+.+.|++...|..+|..+...+++-+|+-+|-|++...--.+.+..+|..+-.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999997654557788888877666

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=83.91  E-value=2  Score=30.57  Aligned_cols=31  Identities=26%  Similarity=0.645  Sum_probs=27.3

Q ss_pred             HHHhcCCCHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008613          451 QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQ  483 (559)
Q Consensus       451 ~m~~~m~~p~~~~m~~~mmk~m~p~~~~~m~~~  483 (559)
                      .+..+|+||.+++++..|+.|  |+.+..|-++
T Consensus         3 ~~~~~l~~P~~~~~l~~~~~n--P~~~~~~~~~   33 (41)
T smart00727        3 EMALRLQNPQVQSLLQDMQQN--PDMLAQMLQE   33 (41)
T ss_pred             HHHHHHcCHHHHHHHHHHHHC--HHHHHHHHHh
Confidence            577888899999999999999  9999888765

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=83.64  E-value=7.2  Score=42.73  Aligned_cols=53  Identities=13%  Similarity=0.150  Sum_probs=38.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613          127 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  179 (559)
Q Consensus       127 lg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P  179 (559)
                      .|+...|-+-...+|+..|..+.-...++.+...+|+|+.+..++..+-.+-.
T Consensus       302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~  354 (831)
T PRK15180        302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIG  354 (831)
T ss_pred             ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhc
Confidence            46666777777777777777777777778888888888888777766554433

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=83.59  E-value=7.4  Score=40.05  Aligned_cols=67  Identities=16%  Similarity=0.061  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613           68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY  143 (559)
Q Consensus        68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l  143 (559)
                      ......+..+...+...++++.++..+++.+.++|.+..         +|..+-..|++.|+...||..|.+.-++
T Consensus       150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~---------~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEP---------AYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH---------HHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            334777888999999999999999999999999998865         8999999999999999999999888654

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=83.50  E-value=1.4  Score=28.18  Aligned_cols=23  Identities=26%  Similarity=0.117  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 008613          150 ALYRRGQAYKDIGRLEEAVSDLS  172 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~dle  172 (559)
                      +++.+|.+|...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45555556666666666555543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=83.47  E-value=12  Score=34.93  Aligned_cols=82  Identities=9%  Similarity=-0.072  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                      .+..+..+.+...+++++.......--+-|+.+.....-|..+...|+|.+|+..|+....-.+..+-....+..+.+.+
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al   91 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK   91 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence            44455566666899999999998888899999999999999999999999999999999887777777777777777666


Q ss_pred             Hh
Q 008613          196 MK  197 (559)
Q Consensus       196 ~~  197 (559)
                      ++
T Consensus        92 ~D   93 (153)
T TIGR02561        92 GD   93 (153)
T ss_pred             CC
Confidence            54

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=83.31  E-value=13  Score=41.66  Aligned_cols=94  Identities=19%  Similarity=0.088  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008613           88 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEA  167 (559)
Q Consensus        88 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeA  167 (559)
                      .-++..|...+.+++.++.      ....++ ++..+..++....++-....++..+|++..++.+++.+....|....+
T Consensus        48 ~~~~~a~~~~~~~~~~~~~------llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~  120 (620)
T COG3914          48 ALAIYALLLGIAINDVNPE------LLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLA  120 (620)
T ss_pred             hHHHHHHHccCccCCCCHH------HHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHH
Confidence            3367777777777777654      222333 788888889998999999999999999999999999999888887776


Q ss_pred             HHHHHH-HHHhCCCCHHHHHHH
Q 008613          168 VSDLSN-AHEVSPDDGTIADVL  188 (559)
Q Consensus       168 i~dlek-Al~l~P~~~~a~~~L  188 (559)
                      +.++.. +....|++..+...+
T Consensus       121 ~~~~~~~a~~~~~~~~~~~~~~  142 (620)
T COG3914         121 LADISEIAEWLSPDNAEFLGHL  142 (620)
T ss_pred             HHHHHHHHHhcCcchHHHHhhH
Confidence            666655 889999987766666

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=83.18  E-value=26  Score=36.64  Aligned_cols=82  Identities=10%  Similarity=-0.124  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH---HHcCC
Q 008613           87 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY---KDIGR  163 (559)
Q Consensus        87 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~---~~lg~  163 (559)
                      .+.-+..|.+||+.+|.+..         ++..+-.++.+.-+-++..+.+++++..+|++...|...-...   ...-.
T Consensus        47 ~E~klsilerAL~~np~~~~---------L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~  117 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSER---------LLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFT  117 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCc
Confidence            35567889999999886643         5555556667778889999999999999999876554443333   23345


Q ss_pred             HHHHHHHHHHHHHh
Q 008613          164 LEEAVSDLSNAHEV  177 (559)
Q Consensus       164 ~eeAi~dlekAl~l  177 (559)
                      ++.....|.+++..
T Consensus       118 v~~~~~~y~~~l~~  131 (321)
T PF08424_consen  118 VSDVRDVYEKCLRA  131 (321)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77788888777764

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=83.14  E-value=4.1  Score=44.11  Aligned_cols=113  Identities=16%  Similarity=0.146  Sum_probs=68.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008613           77 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ  156 (559)
Q Consensus        77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~  156 (559)
                      +-..+.-.|+|..|++...- |++.....-.....-....+|..|-||+-+++|.+||+.+..+|-.--+.-..++.+..
T Consensus       128 LlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~  206 (404)
T PF10255_consen  128 LLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSY  206 (404)
T ss_pred             HHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence            44456678999999887543 22221110001122245589999999999999999999999998432222112222222


Q ss_pred             HHHH-cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Q 008613          157 AYKD-IGRLEEAVSDLSNAHEVSPD--DGTIADVLRD  190 (559)
Q Consensus       157 A~~~-lg~~eeAi~dlekAl~l~P~--~~~a~~~L~~  190 (559)
                      -|-. .+..|.....+--++.++|.  +..+...+++
T Consensus       207 q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lke  243 (404)
T PF10255_consen  207 QYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKE  243 (404)
T ss_pred             hhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence            2222 35567777777778888896  4445444443

>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised

Probab=82.99  E-value=2.8  Score=33.27  Aligned_cols=41  Identities=22%  Similarity=0.405  Sum_probs=30.4

Q ss_pred             HHHHHHHHh-c--CCHHHHHHHHHHhCCCCCHHHHHHHHHHhcc
Q 008613          462 KQMFSSMVK-N--MSPEMMANMSEQFGIKLSREDTEKFQQTMSS  502 (559)
Q Consensus       462 ~~m~~~mmk-~--m~p~~~~~m~~~~g~~~~~~~a~~~~~~~~~  502 (559)
                      |..+.+-+| |  ++++|+..|..|+|.|.|..+-.++.++|++
T Consensus        19 r~~~~k~l~~NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk~   62 (64)
T PF03672_consen   19 RKYMEKQLKENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMKN   62 (64)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Confidence            334444444 4  4569999999999999999988777777654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=82.82  E-value=3.2  Score=45.81  Aligned_cols=74  Identities=19%  Similarity=0.063  Sum_probs=65.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 008613          128 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI---GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  201 (559)
Q Consensus       128 g~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~l---g~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~  201 (559)
                      ..+..+|.+|.+++...|.....|.+|+.++...   |+.-.|+.|+..+++++|....++..|.++...+.+..++
T Consensus       388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea  464 (758)
T KOG1310|consen  388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA  464 (758)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence            4578899999999999999999999999999865   4566799999999999999999999999999888877653

>COG5346 Predicted membrane protein [Function unknown]

Probab=82.48  E-value=3.2  Score=36.97  Aligned_cols=59  Identities=20%  Similarity=0.239  Sum_probs=36.0

Q ss_pred             HHhccCCHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcC---chHHHHHHHHHHHHHHHHhcc
Q 008613          498 QTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGK---PGMILAICMLILAVILHRLGF  556 (559)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~l~~~~~  556 (559)
                      ++-.|+=|.+++|+|..|.+-|..-...+.----+..+   .+-+-.||.||.+|-|-|.+|
T Consensus        45 ~qYnsI~pnt~~rimaMAekEQahrH~~~~k~~~~q~r~~~~~~~tril~liFgi~LVvsi~  106 (136)
T COG5346          45 SQYNSIYPNTLQRIMAMAEKEQAHRHAIDLKNLKIQRRGQLYAKLTRILLLIFGIFLVVSIF  106 (136)
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678889999999999999998633332211112222   334455666666655555555

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.98  E-value=51  Score=31.85  Aligned_cols=101  Identities=13%  Similarity=0.027  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL-AYDAKNVK  149 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL-~ldP~~~k  149 (559)
                      .-.....+.....+|+...|+..|.++-...+ .|.    ..+..+.+.-+.++...|.|++...-.+.+- .-+|-...
T Consensus        94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~----~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~s  168 (221)
T COG4649          94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQ----IGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHS  168 (221)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-Ccc----hhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHH
Confidence            55566788889999999999999999765433 222    1223456666778888899998766554332 22344455


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613          150 ALYRRGQAYKDIGRLEEAVSDLSNAHE  176 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~dlekAl~  176 (559)
                      +.--+|.+-++.|+|..|..+|.....
T Consensus       169 ArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         169 AREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            666788899999999999999998766

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=81.90  E-value=16  Score=41.82  Aligned_cols=99  Identities=15%  Similarity=0.090  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-------C----------chhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 008613           74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIH-------S----------SEGRTLLLACSLNSMSCYLKTKQYDECIKV  136 (559)
Q Consensus        74 lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~-------~----------~e~~~l~~~~~~nlA~~ylklg~y~eAi~~  136 (559)
                      +.--|..+...+..++|.+++.++++......       .          .....+...+++..+.|.+-.++|..+...
T Consensus       304 y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~  383 (608)
T PF10345_consen  304 YFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQE  383 (608)
T ss_pred             HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            44456677888888899999999887665433       0          124566778888899999999999999998


Q ss_pred             HHHHHHcC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613          137 GSEVLAYD---AK------NVKALYRRGQAYKDIGRLEEAVSDLS  172 (559)
Q Consensus       137 ~~~AL~ld---P~------~~kal~~rG~A~~~lg~~eeAi~dle  172 (559)
                      ...+....   |.      .+..+|-.|..+...|+.+.|...|.
T Consensus       384 l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  384 LEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            88777653   22      47789999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=81.85  E-value=12  Score=37.59  Aligned_cols=83  Identities=14%  Similarity=0.171  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHHc
Q 008613           88 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--N----VKALYRRGQAYKDI  161 (559)
Q Consensus        88 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~--~----~kal~~rG~A~~~l  161 (559)
                      ...|+++.+|+........   ......+...+|.-|++.|+|++|+..++.++...-.  +    ...+..+-.|+..+
T Consensus       155 ~~iI~lL~~A~~~f~~~~~---~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~  231 (247)
T PF11817_consen  155 KLIIELLEKAYEQFKKYGQ---NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL  231 (247)
T ss_pred             HHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            3457777777776555433   4556667788899999999999999999988655322  1    45677788888888


Q ss_pred             CCHHHHHHHHHH
Q 008613          162 GRLEEAVSDLSN  173 (559)
Q Consensus       162 g~~eeAi~dlek  173 (559)
                      |+.+..+...-+
T Consensus       232 ~~~~~~l~~~le  243 (247)
T PF11817_consen  232 GDVEDYLTTSLE  243 (247)
T ss_pred             CCHHHHHHHHHH
Confidence            888777765433

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=81.69  E-value=18  Score=34.56  Aligned_cols=66  Identities=12%  Similarity=0.072  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613          113 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVS  178 (559)
Q Consensus       113 ~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---~kal~~rG~A~~~lg~~eeAi~dlekAl~l~  178 (559)
                      ...++..+|..|.+.|++++|++.|.++.+.....   ...+++.-.+....++|......+.++-.+-
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~  103 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI  103 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            34588899999999999999999999998875433   4678888899999999999999999987763

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=81.61  E-value=4.6  Score=28.22  Aligned_cols=29  Identities=21%  Similarity=0.236  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHH--HHHHHHcCC
Q 008613          117 SLNSMSCYLKTKQYDECIKV--GSEVLAYDA  145 (559)
Q Consensus       117 ~~nlA~~ylklg~y~eAi~~--~~~AL~ldP  145 (559)
                      ++.+|.++...|+|++|+..  |.-+..+++
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            34445555555555555555  224444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	559
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		6e-14
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		2e-11
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		4e-11
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		6e-10
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		1e-08
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		1e-08
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		6e-07
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		3e-06
4aif_A	144	Aip Tpr Domain In Complex With Human Hsp90 Peptide		4e-06
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		5e-06
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		7e-06
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		3e-05
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		4e-05
3ieg_A	359	Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A L		2e-04
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		4e-04

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 8/141 (5%)
Query: 57  RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKK--------NLQGIHSSE 108
           +AR D  +     AA   K  GN L+ E +   A+Q+Y +A           L G +   
Sbjct: 165 KARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDM 224
Query: 109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV 168
              +   C LN  +C +K K+YDE I   + VL  + KN KAL+RRG+A  ++G+++ A 
Sbjct: 225 ALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSAR 284
Query: 169 SDLSNAHEVSPDDGTIADVLR 189
            D   A + +PDD  I   LR
Sbjct: 285 DDFRKAQKYAPDDKAIRRELR 305

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 69  NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 128
           ++ + L+K+GNEL+  G +  AL  Y  A     G+ ++     +L    N  +C+LK +
Sbjct: 26  SSVEQLRKEGNELFKCGDYGGALAAYTQA----LGLDATPQDQAVL--HRNRAACHLKLE 79
Query: 129 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 188
            YD+     S+ +  D  +VKALYRR QA + +GRL++AV DL     + P +    + L
Sbjct: 80  DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
Query: 189 RD 190
           R+
Sbjct: 140 RN 141

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 8/134 (5%)
Query: 74  LKKQGNELYSEGRFSNALQKYLLAKKNLQG----IHSSEGRTL---LLACSLNSMSCYLK 126
           LK  GN  +    +  A++KY    + ++G       ++G  L    L+C LN  +C LK
Sbjct: 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK 285
Query: 127 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI-A 185
              +   +    E L  D  N KALYRR Q ++ +   ++A++DL  A E++P+D  I A
Sbjct: 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 345
Query: 186 DVLRDAKEILMKED 199
           ++L+  ++I  ++D
Sbjct: 346 ELLKVKQKIKAQKD 359

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
Query: 74  LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG---------RTLLLACSLNSMSCY 124
           +K++GNE + +   + A+ KY  A      IH+ E          + + ++C+LN  +CY
Sbjct: 41  IKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEISCNLNLATCY 98
Query: 125 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 184
            K K Y + I   S+VL  D  NVKALY+ G A    G LEEA  +L  A  ++P++  I
Sbjct: 99  NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 71  AKMLKKQGNELYSEGRFSNALQKY------LLAKKNLQGIHSSEGRTLLLACSLNSMSCY 124
           A ++K++G   +  G++  A+ +Y      L  +  L    S    + LLA  LN   CY
Sbjct: 268 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327
Query: 125 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
           LK ++Y + ++   + L  D+ N K LYRRG+A   +   E A  D     EV+P +
Sbjct: 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 71  AKMLKKQGNELYSEGRFSNALQKY------LLAKKNLQGIHSSEGRTLLLACSLNSMSCY 124
           A ++K++G   +  G++  A+ +Y      L  +  L    S    + LLA  LN   CY
Sbjct: 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327
Query: 125 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
           LK ++Y + ++   + L  D+ N K LYRRG+A   +   E A  D     EV+P +
Sbjct: 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 57  RARIDAQMNYE--FNAAKMLKKQGNELYSEGRFSNALQKY------LLAKKNLQGIHSSE 108
           +A+   +MN E     + ++K++G   + EG++  AL +Y      L  + +     + +
Sbjct: 131 KAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQK 190
Query: 109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV 168
            + L LA  LN   C+LK + +   I+  ++ L  D+ N K L+RRG+A+  +   E A 
Sbjct: 191 AQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELAR 250
Query: 169 SDLSNAHEVSPDD 181
           +D     ++ P++
Sbjct: 251 ADFQKVLQLYPNN 263

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 69  NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 128
           N+A+  K  GN  Y +G +  A++ Y   +K L+   ++       +   N  + Y K  
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYY---QKALELDPNNA------SAWYNLGNAYYKQG 57
Query: 129 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 188
            Y + I+   + L  D  N KA YRRG AY   G  ++A+ D   A E+ P++      L
Sbjct: 58  DYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNL 117
Query: 189 RDAKE 193
            +AK+
Sbjct: 118 GNAKQ 122

>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide Length = 144

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 70  AAKMLKKQGNELYSEGRFSNALQKY---LLAKKNLQ---------GIHSSEGRTLLLACS 117
           A  ++ ++GN LY EG    A  KY   +   KNLQ          I   +  T LL   
Sbjct: 7   AVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLL--- 63
Query: 118 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177
           LN   C L  ++Y E +   S +L     NVKA ++RG+A+  +   +EA +D +   E+
Sbjct: 64  LNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLEL 123
Query: 178 SP 179
            P
Sbjct: 124 DP 125

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 70  AAKMLKKQGNELYSEGRFSNALQKY---LLAKKNLQ---------GIHSSEGRTLLLACS 117
           A  ++ ++GN LY EG    A  KY   +   KNLQ          I   +  T LL   
Sbjct: 13  AVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLL--- 69
Query: 118 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177
           LN   C L  ++Y E +   S +L     NVKA ++RG+A+  +   +EA +D +   E+
Sbjct: 70  LNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLEL 129
Query: 178 SP 179
            P
Sbjct: 130 DP 131

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 73  MLKKQGNELYSEGRFSNALQKY------LLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK 126
           ++K++G   + EG++  AL +Y      L  + +     + + + L LA  LN   C+LK
Sbjct: 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK 208
Query: 127 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
            + +   I+  ++ L  D+ N K L RRG+A+  +   E A +D     ++ P++
Sbjct: 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 78  GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 137
             EL  +GR+++A  KY    K    I     R+    C      C+ K ++  E I+V 
Sbjct: 264 AEELIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICH-----CFSKDEKPVEAIRVC 318
Query: 138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195
           SEVL  +  NV AL  R +AY      +EA+ D   A E + +D  I + L  A+ +L
Sbjct: 319 SEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 78  GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 137
             EL  +GR+++A  KY    K    I     R+    C      C+ K ++  E I+V 
Sbjct: 264 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH-----CFSKDEKPVEAIRVC 318
Query: 138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195
           SEVL  +  NV AL  R +AY      +EA+ D   A E + +D  I + L  A+ +L
Sbjct: 319 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376

>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A Length = 359

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 78  GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 137
             EL  +GR+++A  KY    K    +     R+    C      C+ K ++  E I++ 
Sbjct: 241 AEELIRDGRYTDATSKYESVXKTEPSVAEYTVRSKERICH-----CFSKDEKPVEAIRIC 295
Query: 138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195
           SEVL  +  NV AL  R +AY      +EA+ D   A E + +D  I + L  A+ +L
Sbjct: 296 SEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 69  NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ-GIHSSEGRTLLLACSLNSMSCYLKT 127
           N+A+     GN  Y +G +  A++ Y   +K L+   +++E          N  + Y K 
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYY---QKALELDPNNAEAW-------YNLGNAYYKQ 56
Query: 128 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV 187
             YDE I+   + L  D  N +A Y  G AY   G  +EA+     A E+ P++      
Sbjct: 57  GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116
Query: 188 LRDAKE 193
           L +AK+
Sbjct: 117 LGNAKQ 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	559
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-34
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-33
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-32
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	9e-32
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-28
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-26
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	7e-23
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-19
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-19
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	8e-19
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-18
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	9e-18
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-17
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-17
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	1e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-08
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-15
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	6e-14
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	8e-14
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-06
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-08
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	4e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	5e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	6e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	9e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	8e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	6e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	5e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	5e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	6e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	8e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	7e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	7e-04

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  128 bits (323), Expect = 1e-34
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 9/146 (6%)

Query: 63  QMNYE--FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG-------RTLL 113
               E    +A  +K++GNE + +   + A+ KY  A          +        + + 
Sbjct: 28  DYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87

Query: 114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSN 173
           ++C+LN  +CY K K Y + I   S+VL  D  NVKALY+ G A    G LEEA  +L  
Sbjct: 88  ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147

Query: 174 AHEVSPDDGTIADVLRDAKEILMKED 199
           A  ++P++  I +        L +  
Sbjct: 148 AASLNPNNLDIRNSYELCVNKLKEAR 173

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  124 bits (314), Expect = 1e-33
 Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 9/139 (6%)

Query: 69  NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG---------RTLLLACSLN 119
            + + L+++GNEL+ +  +  A+  Y  A   L  +   E              +    N
Sbjct: 9   KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN 68

Query: 120 SMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 179
              CYL      E  +  SEVL  +  N KAL+RR +A     +L+EA  DL       P
Sbjct: 69  MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128

Query: 180 DDGTIADVLRDAKEILMKE 198
              ++             E
Sbjct: 129 AAASVVAREMKIVTERRAE 147

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  126 bits (317), Expect = 3e-32
 Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 10/184 (5%)

Query: 24  KCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYS 83
           K       + PP   A++  ++     +E    +AR D  +     AA   K  GN L+ 
Sbjct: 134 KEGNFSFPNVPPM--ADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFK 191

Query: 84  EGRFSNALQKYLLAKKNLQGIHSSE--------GRTLLLACSLNSMSCYLKTKQYDECIK 135
           E +   A+Q+Y +A   +      +           +   C LN  +C +K K+YDE I 
Sbjct: 192 EEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG 251

Query: 136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 195
             + VL  + KN KAL+RRG+A  ++G+++ A  D   A + +PDD  I   LR   E  
Sbjct: 252 HCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE 311

Query: 196 MKED 199
               
Sbjct: 312 KALY 315

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  124 bits (313), Expect = 9e-32
 Identities = 35/157 (22%), Positives = 72/157 (45%), Gaps = 8/157 (5%)

Query: 51  EEIATMRARIDAQMNYE--FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ------ 102
              +  +A+   +MN E     + ++K++G   + EG++  AL +Y      L+      
Sbjct: 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS 184

Query: 103 GIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG 162
              + + + L LA  LN   C+LK + +   I+  ++ L  D+ N K L RRG+A+  + 
Sbjct: 185 NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN 244

Query: 163 RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 199
             E A +D     ++ P++      L   ++ + ++ 
Sbjct: 245 DFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 281

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  116 bits (293), Expect = 1e-28
 Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 7/140 (5%)

Query: 63  QMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLA-------KKNLQGIHSSEGRTLLLA 115
            ++     ++ LK  GN  +    +  A++KY          +   +    ++ + + L+
Sbjct: 215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALS 274

Query: 116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH 175
           C LN  +C LK   +   +    E L  D  N KALYRR Q ++ +   ++A++DL  A 
Sbjct: 275 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 334

Query: 176 EVSPDDGTIADVLRDAKEIL 195
           E++P+D  I   L   K+ +
Sbjct: 335 EIAPEDKAIQAELLKVKQKI 354

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  112 bits (280), Expect = 1e-26
 Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 6/143 (4%)

Query: 63  QMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLAC 116
               +   A ++K++G   +  G++  A+ +Y      L+  +           + LLA 
Sbjct: 260 DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA 319

Query: 117 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 176
            LN   CYLK ++Y + ++   + L  D+ N K LYRRG+A   +   E A  D     E
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379

Query: 177 VSPDDGTIADVLRDAKEILMKED 199
           V+P +      +   ++   + +
Sbjct: 380 VNPQNKAARLQISMCQKKAKEHN 402

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 94.0 bits (234), Expect = 7e-23
 Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 6/120 (5%)

Query: 70  AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 129
           + + L+K+GNEL+  G +  AL  Y  A      +              N  +C+LK + 
Sbjct: 27  SVEQLRKEGNELFKCGDYGGALAAYTQA------LGLDATPQDQAVLHRNRAACHLKLED 80

Query: 130 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 189
           YD+     S+ +  D  +VKALYRR QA + +GRL++AV DL     + P +    + LR
Sbjct: 81  YDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 85.5 bits (212), Expect = 1e-19
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 9/129 (6%)

Query: 71  AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 130
           A+ LK Q N+ +    + NA++ Y  A      I  +    +      N    YL+T+ Y
Sbjct: 13  AEELKTQANDYFKAKDYENAIKFYSQA------IELNPSNAIYYG---NRSLAYLRTECY 63

Query: 131 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 190
              +   +  +  D K +K  YRR  +   +G+   A+ D     +V P D       ++
Sbjct: 64  GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123

Query: 191 AKEILMKED 199
             +I+ ++ 
Sbjct: 124 CNKIVKQKA 132

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 83.5 bits (207), Expect = 2e-19
 Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 11/128 (8%)

Query: 70  AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 129
           +A+ LK+QGN L+   ++  A   Y  A      I  +    +      N   CYLK +Q
Sbjct: 8   SAQELKEQGNRLFVGRKYPEAAACYGRA------ITRNPLVAVYYT---NRALCYLKMQQ 58

Query: 130 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 189
            ++ +      L  D ++VKA +  GQ   ++   +EA+++L  A+ ++ +     +   
Sbjct: 59  PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL--NFGD 116

Query: 190 DAKEILMK 197
           D    L  
Sbjct: 117 DIPSALRI 124

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 81.5 bits (202), Expect = 8e-19
 Identities = 23/136 (16%), Positives = 53/136 (38%), Gaps = 15/136 (11%)

Query: 57  RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLAC 116
            A I+ ++      A+  K +GNE + +G +  A++ Y       + +       +L + 
Sbjct: 5   LAYINPEL------AQEEKNKGNEYFKKGDYPTAMRHYN------EAVKRDPENAILYS- 51

Query: 117 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 176
             N  +C  K  ++   +      +  D+K +K   R+      +    +A     +A +
Sbjct: 52  --NRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQ 109

Query: 177 VSPDDGTIADVLRDAK 192
           V P +    + +R+  
Sbjct: 110 VDPSNEEAREGVRNCL 125

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 80.3 bits (199), Expect = 2e-18
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 9/123 (7%)

Query: 71  AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 130
              LK++GN+  S G   +ALQ Y  A      I       +L +   N  + Y K   Y
Sbjct: 4   VNELKEKGNKALSVGNIDDALQCYSEA------IKLDPHNHVLYS---NRSAAYAKKGDY 54

Query: 131 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 190
            +  + G + +       K   R+  A + + R EEA        +   ++  + + L++
Sbjct: 55  QKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114

Query: 191 AKE 193
            + 
Sbjct: 115 MEA 117

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 78.8 bits (195), Expect = 9e-18
 Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 9/129 (6%)

Query: 69  NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 128
             A+ LK +GNE      F  A+  Y  A      I  +    +      N  + Y K  
Sbjct: 10  AEAERLKTEGNEQMKVENFEAAVHFYGKA------IELNPANAVYFC---NRAAAYSKLG 60

Query: 129 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 188
            Y   ++     +  D    KA  R G A   + +  EAV+    A E+ PD+ T    L
Sbjct: 61  NYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120

Query: 189 RDAKEILMK 197
           + A+  L +
Sbjct: 121 KIAELKLRE 129

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 77.7 bits (192), Expect = 2e-17
 Identities = 19/134 (14%), Positives = 44/134 (32%), Gaps = 22/134 (16%)

Query: 71  AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM------SCY 124
           A+  + +G E +++  + NA++ Y                  +     ++       +  
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEM---------------IKRAPEDARGYSNRAAAL 48

Query: 125 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 184
            K   + E I   ++ +  D   V+A  R+  A   +     A+  L  A     +    
Sbjct: 49  AKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN- 107

Query: 185 ADVLRDAKEILMKE 198
               R+  ++  K 
Sbjct: 108 GSSAREIDQLYYKA 121

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 77.7 bits (192), Expect = 3e-17
 Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 11/133 (8%)

Query: 61  DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS 120
            + MN +   A M+K +GNE + +G +  A++ Y       + I  +     L +   N 
Sbjct: 8   HSHMNPD--LALMVKNKGNECFQKGDYPQAMKHYT------EAIKRNPKDAKLYS---NR 56

Query: 121 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
            +CY K  ++   +K   E +  +   +K   R+  A + +    +A+     A ++   
Sbjct: 57  AACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 116

Query: 181 DGTIADVLRDAKE 193
               AD  +    
Sbjct: 117 CKEAADGYQRCMM 129

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 79.6 bits (196), Expect = 1e-16
 Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 9/129 (6%)

Query: 70  AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 129
           +A+ LK+QGN L+   ++  A   Y  A      I  +    +      N   CYLK +Q
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRA------ITRNPLVAVYYT---NRALCYLKMQQ 53

Query: 130 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 189
            ++ +      L  D ++VKA +  GQ   ++   +EA+++L  A+ ++ +         
Sbjct: 54  PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 113

Query: 190 DAKEILMKE 198
            +   + K+
Sbjct: 114 PSALRIAKK 122

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 80.1 bits (198), Expect = 3e-16
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 5/126 (3%)

Query: 74  LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 133
           L +   EL  +GR+++A  KY    K              +        C+ K ++  E 
Sbjct: 260 LIESAEELIRDGRYTDATSKYESVMK-----TEPSIAEYTVRSKERICHCFSKDEKPVEA 314

Query: 134 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 193
           I+V SEVL  +  NV AL  R +AY      +EA+ D   A E + +D  I + L  A+ 
Sbjct: 315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQR 374

Query: 194 ILMKED 199
           +L +  
Sbjct: 375 LLKQSQ 380

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 17/116 (14%), Positives = 41/116 (35%), Gaps = 15/116 (12%)

Query: 69  NAAKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYL 125
              +   + G +L + G+ ++AL ++  A     +    +                + +L
Sbjct: 24  ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRA------------TVFL 71

Query: 126 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
              +    +   ++V+        A  +RG      G+L+EA  D     + +P +
Sbjct: 72  AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 127

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 6/110 (5%)

Query: 78  GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEG---RTLLLACSLNSMSCYLKTKQYD 131
           G+ L  +G+   A   +        +      ++    ++  +    +       +  Y 
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160

Query: 132 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
             I    ++L     + +    R + +   G   +A+SDL  A ++  D+
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN 210

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 21/139 (15%), Positives = 49/139 (35%), Gaps = 11/139 (7%)

Query: 58  ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ-GIHSSEGRTLLLAC 116
            +       + +  + L+ Q    +  G ++ A+         L+  +  +E R  L A 
Sbjct: 130 EKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI---LEVCVWDAELR-ELRAE 185

Query: 117 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 176
                 C++K  +  + I            N +A Y+    Y  +G  E ++S++    +
Sbjct: 186 ------CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239

Query: 177 VSPDDGTIADVLRDAKEIL 195
           +  D        +  K++ 
Sbjct: 240 LDQDHKRCFAHYKQVKKLN 258

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 20/106 (18%)

Query: 76  KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK 135
             G +L +E  +  ++      K    G                     L   Q  + + 
Sbjct: 8   SSGVDLGTENLYFQSMADV--EKHLELGK------------------KLLAAGQLADALS 47

Query: 136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
                +  D  N  A YRR   +  +G+ + A+ DL+   ++  D 
Sbjct: 48  QFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF 93

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 8/137 (5%)

Query: 61  DAQMNYEF-NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLN 119
               +Y+       L +   EL  +GR+++A  KY    K       S     + +    
Sbjct: 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK----TEPSVAEYTVRS--KE 276

Query: 120 SM-SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178
            +  C+ K ++  E I++ SEVL  +  NV AL  R +AY      +EA+ D   A E +
Sbjct: 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336

Query: 179 PDDGTIADVLRDAKEIL 195
            +D  I + L  A+ +L
Sbjct: 337 ENDQQIREGLEKAQRLL 353

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 63.8 bits (156), Expect = 3e-11
 Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 71  AKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKT 127
            +   + G +L + G+ ++AL ++  A     +    +                + +L  
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRA------------TVFLAM 50

Query: 128 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
            +    +   ++V+A       A  +RG      G+L+EA  D     + +P +
Sbjct: 51  GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 104

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 20/136 (14%), Positives = 50/136 (36%), Gaps = 10/136 (7%)

Query: 66  YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 125
            + +  + L+ Q  + +    ++ A+       +    +  +E R  L A       C++
Sbjct: 115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILE--VCVWDAELR-ELRAE------CFI 165

Query: 126 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA 185
           K  +  + I          + N +A Y+    Y  +G  E ++S++    ++  D     
Sbjct: 166 KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 225

Query: 186 DVLRDAKEIL-MKEDG 200
              +  K++  + E  
Sbjct: 226 AHYKQVKKLNKLIESA 241

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 72.3 bits (178), Expect = 1e-15
 Identities = 24/139 (17%), Positives = 56/139 (40%), Gaps = 19/139 (13%)

Query: 69  NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS-CYLKT 127
             A   K+ GN+ Y +  F  AL+ Y  AK+    +  +          + + +  Y + 
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKE----LDPTN------MTYITNQAAVYFEK 51

Query: 128 KQYDECIKVGSEVLAYDAKN-------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
             Y++C ++  + +    +N        KA  R G +Y    + ++A+   + +      
Sbjct: 52  GDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

Query: 181 DGTIADVLRDAKEILMKED 199
              +    + A++IL +++
Sbjct: 112 PDVLKK-CQQAEKILKEQE 129

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 69.0 bits (169), Expect = 6e-14
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 11/130 (8%)

Query: 71  AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 130
           +  LK +GN   +   +S A+  Y  A      +  +    + L+   N  + Y  + Q+
Sbjct: 11  SDKLKSEGNAAMARKEYSKAIDLYTQA------LSIAPANPIYLS---NRAAAYSASGQH 61

Query: 131 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA--DVL 188
           ++  +        D K  KA  R G A  D+   + A        E   + G+ A    L
Sbjct: 62  EKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121

Query: 189 RDAKEILMKE 198
              K  + + 
Sbjct: 122 ETTKRKIEEA 131

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 67.3 bits (165), Expect = 8e-14
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 19/132 (14%)

Query: 69  NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS-CYLKT 127
           +AA   K  GN  Y +  F  A   Y  A +    +  S           N+ +  Y + 
Sbjct: 6   DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE----LDPSN------ITFYNNKAAVYFEE 55

Query: 128 KQYDECIK-------VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
           K++ EC++       VG E  A      KA+ R G A++    L  AV     +     D
Sbjct: 56  KKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

Query: 181 DGTIADVLRDAK 192
              +   +++ +
Sbjct: 116 PELVKK-VKELE 126

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 9/130 (6%)

Query: 70  AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 129
            A+ LK Q N+ +    + NA++ Y  A      I  +    +      N    YL+T+ 
Sbjct: 5   RAEELKTQANDYFKAKDYENAIKFYSQA------IELNPSNAIYYG---NRSLAYLRTEC 55

Query: 130 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 189
           Y   +   +  +  D K +K  YRR  +   +G+   A+ D     +V P D       +
Sbjct: 56  YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 115

Query: 190 DAKEILMKED 199
           +  +I+ ++ 
Sbjct: 116 ECNKIVKQKA 125

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 71.0 bits (173), Expect = 6e-13
 Identities = 65/472 (13%), Positives = 125/472 (26%), Gaps = 118/472 (25%)

Query: 158 YKDIGR--LEEAVSDLSNAHEVSPDDGTIADVLR------DAKEILMKEDGHHGPR---G 206
           YKDI     +  V +         D   + D+ +      +   I+M +D   G      
Sbjct: 18  YKDILSVFEDAFVDNF--------DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 207 LLIEEITEEVGAVSSGSHRSSGTEY------LAREKADPSKSEH---SANGRGSSTKPEF 257
            L+ +  E V        R     Y      +  E+  PS           R  +    F
Sbjct: 70  TLLSKQEEMVQKFVEEVLR---INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 258 LPDLKDDPESIRSFQNFISNANPDSFAALSG----GK---AGEISPDMFKAVSIMINKM- 309
                   +     +  +    P     + G    GK   A ++    +K    M  K+ 
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS-YKVQCKMDFKIF 185

Query: 310 --------SPEELQRMIQ----------IASSFQGENPHANGDSIETNFNGFRPGSTPPN 351
                   SPE +  M+Q           + S    N      SI+              
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-------- 237

Query: 352 MRPDMLKTASDVMSKMSSEDLQKMFEMES----TLKNKVAGQASTAVDPKGISSDPGPR- 406
           ++    +    V+  + +      F +      T + K      +A     IS D     
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 407 --LSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPST-----ADLQQMRN----- 454
               E +          +         P     +  + +P         ++         
Sbjct: 298 LTPDEVKSLLL----KYLDCRPQD--LPR----EVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 455 -QMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMML 513
             +N   +  +  S +  + P     M ++  +             +S          ++
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILLS----------LI 395

Query: 514 WADRVQRGVQGV-----------KKTKNWLLGKPGMILAICMLILAVI-LHR 553
           W D ++  V  V           K+ K   +  P + L + + +     LHR
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 43/334 (12%), Positives = 97/334 (29%), Gaps = 107/334 (32%)

Query: 35  PEEVAEIGEKLANASPEE----------------IATMRA-RIDAQMNYE-F-------N 69
            +   ++ + L    P +                +    + ++  +M+++ F       N
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 70  AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 129
           + + + +   +L            Y +          S    L +      +   LK+K 
Sbjct: 194 SPETVLEMLQKLL-----------YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 130 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-------RLEEAVSDLSNAH--EVSPD 180
           Y+ C+ V   V   +AK   A         ++        R ++    LS A    +S D
Sbjct: 243 YENCLLVLLNV--QNAKAWNAF--------NLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 181 DGTIADVLRDAKEILMK-----------EDGHHGPRGLLIEEITEEVGAVSSGSHRSSGT 229
             ++     + K +L+K           E     P    +  I E    +  G       
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP--RRLSIIAES---IRDGLATWDNW 347

Query: 230 EYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRS-FQN---FISNANPDSFAA 285
           +++  +K              ++     L  L  +P   R  F     F  +A+      
Sbjct: 348 KHVNCDKL-------------TTIIESSLNVL--EPAEYRKMFDRLSVFPPSAH------ 386

Query: 286 LSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQ 319
                   I       +S++   +   ++  ++ 
Sbjct: 387 --------IPT---ILLSLIWFDVIKSDVMVVVN 409

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 63.0 bits (154), Expect = 3e-11
 Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 21/133 (15%)

Query: 69  NAAKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSM-SCY 124
           + A   K +GN+ Y   +F  A++ Y  A    K+                 LN+  +  
Sbjct: 3   SMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKD--------------ITYLNNRAAAE 48

Query: 125 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 184
            +  +Y+  I   ++ +    +         +++  IG     + DL    E      T 
Sbjct: 49  YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108

Query: 185 ---ADVLRDAKEI 194
              AD+L   +  
Sbjct: 109 HRTADILTKLRNA 121

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 15/116 (12%)

Query: 69  NAAKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYL 125
             A+  + +G E +++  + NA++ Y             +S+              +   
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRA------------AALA 184

Query: 126 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
           K   + E I   ++ +  D   V+A  R+  A   +     A+  L  A     + 
Sbjct: 185 KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV 240

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 15/107 (14%)

Query: 78  GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134
            + L         L+K                 EG+             Y     +   +
Sbjct: 112 ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKE------------YFTKSDWPNAV 159

Query: 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
           K  +E++    ++ +    R  A   +    EA++D + A E  P+ 
Sbjct: 160 KAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 33/121 (27%)

Query: 71  AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS-------- 122
            +  K+QGN L+ +G +  A+  Y             +        +    +        
Sbjct: 4   FEKQKEQGNSLFKQGLYREAVHCY------------DQ------LITAQPQNPVGYSNKA 45

Query: 123 -CYLKTKQYDECIKVGSEVLAYDAKNVKAL------YRRGQAYKDIGRLEEAVSDLSNAH 175
              +K  +Y + I++  + L Y +            YR   A   +G ++  V ++    
Sbjct: 46  MALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105

Query: 176 E 176
           E
Sbjct: 106 E 106

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 16/119 (13%)

Query: 65  NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSM 121
           +     A  LK +GN  ++   F+ A++ Y  A     N    +S+              
Sbjct: 19  SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNIS------------ 66

Query: 122 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
           +CY+ T   ++ I+  ++ L     + KAL RR  A + +G   +A+ DL +   ++ D
Sbjct: 67  ACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL-SVLSLNGD 124

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 12/114 (10%)

Query: 69  NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKT 127
           NAA  L   G   + +    +A       ++++  +H +         S   +       
Sbjct: 241 NAALALCYTGIFHFLKNNLLDAQVLL---QESIN-LHPT-------PNSYIFLALTLADK 289

Query: 128 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
           +   E  K   + +  + +     Y RGQ Y  +   + A  D   A  ++P++
Sbjct: 290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 9/126 (7%)

Query: 78  GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTL----LLACSLNSMSCYLKTKQY 130
              L   G F  A+++Y +A   ++  + IH   G  +    +LA   +     L  +++
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444

Query: 131 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI--ADVL 188
           +  IK+ ++    D ++ +A     Q    + +++EA+    ++  ++        A   
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTF 504

Query: 189 RDAKEI 194
            +A +I
Sbjct: 505 AEAAKI 510

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 24/175 (13%), Positives = 41/175 (23%), Gaps = 18/175 (10%)

Query: 37  EVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQ---- 92
            V  +      AS E +        A      N +K   +    L S    ++       
Sbjct: 117 SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176

Query: 93  -----------KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL 141
                       Y  A   L                + +      T  Y   +   +   
Sbjct: 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD 236

Query: 142 AYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT---IADVLRDAKE 193
                   AL   G  +     L +A   L  +  + P   +   +A  L D + 
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKEN 291

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 11/107 (10%), Positives = 24/107 (22%), Gaps = 15/107 (14%)

Query: 78  GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134
           G   +    + NA + +  A          +                    K  ++ E  
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA------------CLLYKQGKFTESE 364

Query: 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
              +E         +      +   D G  + A+     A  +    
Sbjct: 365 AFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 13/59 (22%), Positives = 21/59 (35%)

Query: 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
            +   K ++E IK     +  D             Y   G LE+ +   + A E+ PD 
Sbjct: 34  HFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH 92

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 59.8 bits (145), Expect = 5e-11
 Identities = 15/109 (13%), Positives = 36/109 (33%), Gaps = 11/109 (10%)

Query: 74  LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLL-LACSLNSMSCYLKTKQYDE 132
           +     + Y++GR   A   +    + L          ++ LA      + Y   +Q+ +
Sbjct: 39  IYSYAYDFYNKGRIEEAEVFF----RFLCIYDFYNVDYIMGLA------AIYQIKEQFQQ 88

Query: 133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
              + +   A    +   ++  GQ    +    +A        + S D+
Sbjct: 89  AADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 63.6 bits (155), Expect = 7e-11
 Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 18/108 (16%)

Query: 69  NAAKMLKKQGNELYSEGRFSNALQKY---LLAKKNLQGIHSSEGRTLLLACSLNSMS-CY 124
             A  LK +GN+ +   ++ +A++ Y   L  K++                  +++S CY
Sbjct: 4   KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED--------------PVFYSNLSACY 49

Query: 125 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLS 172
           +      + +++ ++ L       K L RR  A + +G+  +A+ DLS
Sbjct: 50  VSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLS 97

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 20/117 (17%), Positives = 33/117 (28%), Gaps = 18/117 (15%)

Query: 69  NAAKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSM-SCY 124
             A  L+  G   + +     A +    A      +               S   M    
Sbjct: 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN--------------SYIYMALIM 280

Query: 125 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
                  E      + L  D+ N    Y RGQ    +   ++A  D   A E+ P++
Sbjct: 281 ADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN 337

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 57.1 bits (138), Expect = 9e-09
 Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 78  GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134
              L  +  F  AL++Y LA   +  L GI+      +  A  L         + + E  
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT---VENFIEAT 435

Query: 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
            +  +    D ++ +A     Q       ++EA++    + +++   
Sbjct: 436 NLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 12/107 (11%), Positives = 30/107 (28%), Gaps = 15/107 (14%)

Query: 78  GNELYSEGRFSNALQKYLLAKK---NLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134
           G   +    +  A + +  AK+        +                    +  ++D+C 
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLA------------CLAYRENKFDDCE 358

Query: 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
            + SE      +  +      +   D    ++A+     A E+    
Sbjct: 359 TLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 15/133 (11%), Positives = 35/133 (26%), Gaps = 3/133 (2%)

Query: 52  EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS--SEG 109
              T  +   A+   +              +   +       Y  + +  + + +  S  
Sbjct: 138 ATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL 197

Query: 110 RTLLLACSLNSMSCYLK-TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV 168
                     +   + K  + ++E +   +E      K   +L   G           A 
Sbjct: 198 YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAH 257

Query: 169 SDLSNAHEVSPDD 181
            D+  A E+ P  
Sbjct: 258 EDIKKAIELFPRV 270

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
            + + K+YD+ IK  +  L      V         Y  +G L++ V   + A E+ PD 
Sbjct: 15  QFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKALELKPDY 72

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 23/122 (18%), Positives = 42/122 (34%)

Query: 78  GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 137
           G   +  G +  A + +L A + ++ I +            N      K K+Y E +   
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259

Query: 138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 197
            + L    +N       G  +  +G  E AV     A  +  DD     +L    E+ + 
Sbjct: 260 RQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIG 319

Query: 198 ED 199
           + 
Sbjct: 320 DS 321

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 11/107 (10%)

Query: 77  QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDECIK 135
            G+    E     A+  Y  A + ++G H            +  +   Y  T       +
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLP----------MLYIGLEYGLTNNSKLAER 180

Query: 136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182
             S+ L+   ++   ++  G      G  + A     +A E     G
Sbjct: 181 FFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 13/115 (11%), Positives = 33/115 (28%), Gaps = 10/115 (8%)

Query: 69  NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 128
               ++       Y    F    +   +  +       +    + +          ++  
Sbjct: 20  ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP--FHASCLPVHIGT-------LVELN 70

Query: 129 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL-EEAVSDLSNAHEVSPDDG 182
           + +E   +  +++     N  + +  G  Y  +G   E A   LS A  +    G
Sbjct: 71  KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG 125

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 10/93 (10%), Positives = 25/93 (26%), Gaps = 15/93 (16%)

Query: 78  GNELYSEGRFSNALQKYLLAKK---NLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134
           G+      +++ AL  +  A          +S+ G              +     ++  +
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGY------------IHSLMGNFENAV 290

Query: 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEA 167
                 L     +  ++   G   +      EA
Sbjct: 291 DYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 17/133 (12%), Positives = 44/133 (33%), Gaps = 21/133 (15%)

Query: 69  NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM------S 122
           +  + L   G   Y  G++ +A + +               + L +    ++       +
Sbjct: 16  DTLEQLYALGFNQYQAGKWDDAQKIF---------------QALCMLDHYDARYFLGLGA 60

Query: 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182
           C      Y++ ++  S     D    +  +   + +  +G L+ A S   +A  ++    
Sbjct: 61  CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120

Query: 183 TIADVLRDAKEIL 195
               +   A  +L
Sbjct: 121 AHEALAARAGAML 133

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 14/118 (11%), Positives = 40/118 (33%), Gaps = 7/118 (5%)

Query: 71  AKMLKKQGNELYSEGRFSNALQKYLLA------KKNLQGIHSSEGRTLLLACSLNSM-SC 123
              + ++ +     G+   A+  +         +  +    + +  + + +     +   
Sbjct: 4   VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63

Query: 124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
           Y K + YD+      E+L     NV  L    +     G+ ++A+       ++  D+
Sbjct: 64  YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 17/132 (12%)

Query: 69  NAAKMLKKQGNELYSEGRFSNALQKY---LLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 125
           N    L+         G+  +AL+ Y   L  + +    +   G              YL
Sbjct: 86  NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY-----------YL 134

Query: 126 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---G 182
             +Q  + ++   + L+   K   A YR G +     R E+A + L       P      
Sbjct: 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQK 194

Query: 183 TIADVLRDAKEI 194
           T+  +LR  KE+
Sbjct: 195 TLDKILRIEKEV 206

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 54.9 bits (131), Expect = 4e-09
 Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 14/124 (11%)

Query: 71  AKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKT 127
           A +           G +  A      A      +    + +       C           
Sbjct: 11  AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL 70

Query: 128 KQYDECIKVGSEVLAYDAKN-----------VKALYRRGQAYKDIGRLEEAVSDLSNAHE 176
           + +DE +    + L Y  +            + A+Y R  A   +GR  EA+ +     E
Sbjct: 71  RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130

Query: 177 VSPD 180
           +  +
Sbjct: 131 MIEE 134

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.2 bits (139), Expect = 6e-09
 Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 15/109 (13%)

Query: 76  KQGNELYSEGRFSNALQKY---LLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 132
           +  +  Y  G F  A +        + +  G+                 S + + ++ D 
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLS------------SIHFQCRRLDR 51

Query: 133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
                +  +  +    +A    G  YK+ G+L+EA+    +A  + PD 
Sbjct: 52  SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 15/107 (14%)

Query: 78  GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134
              L + G    A+Q Y+ A     +L  + S  G            +      + +E  
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG------------NLLKALGRLEEAK 155

Query: 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
               + +        A    G  +   G +  A+     A  + P+ 
Sbjct: 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.6 bits (122), Expect = 6e-07
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 13/115 (11%)

Query: 69  NAAKMLKKQGNELYSEGRFSNALQKYLLA-KKNLQGIHSSEGRTLLLACSLNSM-SCYLK 126
           +   +L    +  +   R   +     LA K+N             LA + +++ + Y +
Sbjct: 31  DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-----------LAEAYSNLGNVYKE 79

Query: 127 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
             Q  E I+     L      +        A    G +E AV    +A + +PD 
Sbjct: 80  RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 134

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.9 bits (115), Expect = 5e-06
 Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 15/107 (14%)

Query: 78  GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134
           G    ++G    A+  +  A     N    + + G  L             + + +D  +
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK------------EARIFDRAV 223

Query: 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
                 L+    +          Y + G ++ A+     A E+ P  
Sbjct: 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 19/124 (15%)

Query: 78  GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134
               Y +G    A+  Y  A   + +    + +    L             +     E  
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK------------EKGSVAEAE 291

Query: 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT----IADVLRD 190
              +  L     +  +L       ++ G +EEAV     A EV P+       +A VL+ 
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351

Query: 191 AKEI 194
             ++
Sbjct: 352 QGKL 355

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 21/107 (19%), Positives = 30/107 (28%), Gaps = 15/107 (14%)

Query: 78  GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134
           GN L     F  A+  YL A     N   +H +                Y +    D  I
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA------------CVYYEQGLIDLAI 257

Query: 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
                 +        A      A K+ G + EA    + A  + P  
Sbjct: 258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.6 bits (109), Expect = 3e-05
 Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 15/121 (12%)

Query: 78  GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDECIKV 136
            N L  +G  + A   Y      L+ +  +       A SLN++ +   +    +E +++
Sbjct: 278 ANALKEKGSVAEAEDCY---NTALR-LCPT------HADSLNNLANIKREQGNIEEAVRL 327

Query: 137 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT----IADVLRDAK 192
             + L    +   A        +  G+L+EA+     A  +SP        + + L++ +
Sbjct: 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

Query: 193 E 193
           +
Sbjct: 388 D 388

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 4/115 (3%)

Query: 78  GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDECIKV 136
           G   +++     A+  +  A   L  +  ++      A +  ++   Y K K YD  I  
Sbjct: 482 GVVAFNKSDMQTAINHFQNA---LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538

Query: 137 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 191
            ++ L     +          Y        A++ L  +  +SP++   +D+L+ A
Sbjct: 539 LNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.9 bits (114), Expect = 6e-06
 Identities = 15/140 (10%), Positives = 41/140 (29%), Gaps = 15/140 (10%)

Query: 45  LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG- 103
           L  A  E    ++         +    + L        S        + YL +   L+  
Sbjct: 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKS 304

Query: 104 --IHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI 161
             +   +  TL +              ++ + + + +++L  D  N+        +  + 
Sbjct: 305 SDLLLCKADTLFVRS------------RFIDVLAITTKILEIDPYNLDVYPLHLASLHES 352

Query: 162 GRLEEAVSDLSNAHEVSPDD 181
           G   +     ++  +  P+ 
Sbjct: 353 GEKNKLYLISNDLVDRHPEK 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 13/114 (11%), Positives = 41/114 (35%), Gaps = 9/114 (7%)

Query: 69  NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 128
            ++ +L  + + L+   RF + L       + +   +        L      ++   ++ 
Sbjct: 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILE-IDPYN--------LDVYPLHLASLHESG 353

Query: 129 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182
           + ++   + ++++    +        G  Y  + ++ EA    S +  + P  G
Sbjct: 354 EKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG 407

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 7/59 (11%), Positives = 19/59 (32%)

Query: 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
            +    ++D+ I   +                G  +  +G +  A   L +++ +   D
Sbjct: 416 SFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 23/135 (17%), Positives = 38/135 (28%), Gaps = 29/135 (21%)

Query: 63  QMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS 122
            +    N A  L          G ++ A    LL K++L             AC   +  
Sbjct: 112 DITGNPNDAFWL---AQVYCCTGDYARAKC--LLTKEDLYNRS--------SACRYLAAF 158

Query: 123 CYLKTKQYDECIKVGSEVLAY------------DAKNVK----ALYRRGQAYKDIGRLEE 166
           C +K   +   + +  E   +                +K      Y RGQ Y ++   + 
Sbjct: 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218

Query: 167 AVSDLSNAHEVSPDD 181
           A      A  V    
Sbjct: 219 AKECYKEALMVDAKC 233

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 14/109 (12%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 77  QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDECIK 135
             +    EG    A+  Y  A +  QG H               +   +++        +
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLP----------YLFLGMQHMQLGNILLANE 462

Query: 136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 184
                 A    +   L   G    +   ++ A++   NA  +     + 
Sbjct: 463 YLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 10/59 (16%), Positives = 21/59 (35%)

Query: 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
            YL   +  E  +  S+    D +   A      ++   G  ++A+S  + A  +    
Sbjct: 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 15/107 (14%)

Query: 78  GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134
           G  L  +G+ S A+Q+Y  A         ++   G            S +     +   I
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIG------------SYFYNKGNFPLAI 128

Query: 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
           +   + +     + K  Y  GQAY       +A S      E+ P+ 
Sbjct: 129 QYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 14/117 (11%), Positives = 32/117 (27%), Gaps = 18/117 (15%)

Query: 71  AKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKT 127
             +  +  + L+    ++ A++ +      K N   I++                CY + 
Sbjct: 3   DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYN------------RRAVCYYEL 50

Query: 128 KQYDECIKVGS---EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
            +YD   K        +             G+     G+   A+     A +     
Sbjct: 51  AKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR 107

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 17/156 (10%)

Query: 31  THTPPEEVAEIGEKLANASPEEIATMRAR--IDAQMNYEFNAAKMLKKQGNELYSEGRFS 88
           ++T   +   +   L     +E+   R    + ++   +   A++L ++G    S G  +
Sbjct: 1   SNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRA 60

Query: 89  NALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 145
            A   +  A   + ++  + +  G  L             +   +D   +    VL  D 
Sbjct: 61  LARNDFSQALAIRPDMPEVFNYLGIYLT------------QAGNFDAAYEAFDSVLELDP 108

Query: 146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
               A   RG A    GR + A  DL   ++  P+D
Sbjct: 109 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 6/110 (5%)

Query: 78  GNELYSEGRFSNALQKY---LLAKKNLQGIHSSEGRTLLLACSL---NSMSCYLKTKQYD 131
                +E   + AL      LL++   + + S   +  +    L   +    +    +Y 
Sbjct: 96  AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155

Query: 132 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
           EC  +    L  +  + +     G  Y      + A ++L  A E+ PDD
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 14/130 (10%), Positives = 34/130 (26%), Gaps = 21/130 (16%)

Query: 60  IDAQMNYEFNA------AKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGR 110
           +    +Y F A       +   ++G  +      + A   +          +    S G 
Sbjct: 4   LQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGL 63

Query: 111 TLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD 170
           T              + ++    I   +     D K++        ++ +      A++ 
Sbjct: 64  TQA------------ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALAS 111

Query: 171 LSNAHEVSPD 180
           L       P 
Sbjct: 112 LRAWLLSQPQ 121

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 16/100 (16%), Positives = 26/100 (26%), Gaps = 15/100 (15%)

Query: 85  GRFSNALQKYLLAKKN---LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL 141
           G        Y     N          EG ++L            K     E       V 
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSML------------KLANLAEAALAFEAVC 48

Query: 142 AYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
               +  +A    G    +  +   A+  L++A  + P D
Sbjct: 49  QAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 88

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 13/107 (12%), Positives = 31/107 (28%), Gaps = 15/107 (14%)

Query: 78  GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134
            +     G  +                    +  GR                 +++ E  
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGR------------VRWTQQRHAEAA 77

Query: 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
            +  +      ++       G A +D G+ E A +  + AH++ P++
Sbjct: 78  VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 16/125 (12%), Positives = 32/125 (25%), Gaps = 16/125 (12%)

Query: 78  GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDECIKV 136
           G  LY + R+  A Q+ L A ++      S            ++    L+ K+  +  + 
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSR--------VFENLGLVSLQMKKPAQAKEY 163

Query: 137 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-------GTIADVLR 189
             + L  +                      A        +    +         +A V  
Sbjct: 164 FEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFE 223

Query: 190 DAKEI 194
           D    
Sbjct: 224 DRDTA 228

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182
            +LK       + +  E++  D   V   Y  G+ Y+ + R ++A+   +   EV+ ++G
Sbjct: 16  EHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75

Query: 183 TI--ADVLRDAKEILMKEDGHH 202
           T      L+DAK      + HH
Sbjct: 76  TQKDLSELQDAKLKAEGLEHHH 97

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 12/109 (11%)

Query: 77  QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKV 136
           +G     +  +  AL  +   +     I  + G              Y   K   E  K 
Sbjct: 12  EGVLAADKKDWKGALDAFSAVQDPHSRICFNIG------------CMYTILKNMTEAEKA 59

Query: 137 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA 185
            +  +  D     A ++RG  Y    + + A+ DL  A      +  I 
Sbjct: 60  FTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID 108

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 17/121 (14%), Positives = 35/121 (28%), Gaps = 9/121 (7%)

Query: 61  DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS 120
             Q  +E  A +    +  E  ++   S + + Y    +N                +   
Sbjct: 21  KMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPG---------AFEE 71

Query: 121 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
               LK       I      +  D  + +A    G    +    + A+  L    E+ P+
Sbjct: 72  GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN 131

Query: 181 D 181
           +
Sbjct: 132 N 132

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 20/143 (13%), Positives = 37/143 (25%), Gaps = 15/143 (10%)

Query: 41  IGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKY---LLA 97
           I E     +   ++             F       ++G +   EG     +      +L 
Sbjct: 35  ISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ 94

Query: 98  KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA 157
                      G T              + +     I      L     N+KAL     +
Sbjct: 95  DPGDAEAWQFLGITQA------------ENENEQAAIVALQRCLELQPNNLKALMALAVS 142

Query: 158 YKDIGRLEEAVSDLSNAHEVSPD 180
           Y +    ++A   L N  + +P 
Sbjct: 143 YTNTSHQQDACEALKNWIKQNPK 165

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 49.7 bits (118), Expect = 9e-07
 Identities = 28/181 (15%), Positives = 56/181 (30%), Gaps = 7/181 (3%)

Query: 7   LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMR---ARIDAQ 63
           L  I   +   ++   +              VAE+  +++ +      T     A I   
Sbjct: 54  LDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113

Query: 64  MNYEFNAAKMLKKQGNELYSEGRFSNAL---QKYLLAKKNLQGIHSSEGRTLLLACSLNS 120
                +AA     QG+ L         L    +  LA+K L+ +   +    L   +   
Sbjct: 114 DQ-NPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAW 172

Query: 121 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
           +S     ++  +   +  E+    +  +  L  +   +   GR E A   L  A +    
Sbjct: 173 VSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232

Query: 181 D 181
            
Sbjct: 233 H 233

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 7/59 (11%), Positives = 19/59 (32%)

Query: 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
                +     + V  +      + V A+       + +  ++  +  L  AH ++P  
Sbjct: 387 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 445

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 11/116 (9%), Positives = 26/116 (22%), Gaps = 15/116 (12%)

Query: 69  NAAKMLKKQGNELYSEGRFSNALQKYLLAKK---NLQGIHSSEGRTLLLACSLNSMSCYL 125
                +        +       L     A           +S                  
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHD------------GGKQ 151

Query: 126 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
             +     + V  +      + V A+   G   + +  ++  +  L  AH ++P  
Sbjct: 152 ALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 207

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 8/59 (13%), Positives = 20/59 (33%)

Query: 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
                +     + V  +      + V A+   G   + +  ++  +  L  AH ++P  
Sbjct: 217 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 275

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 7/54 (12%), Positives = 20/54 (37%)

Query: 128 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
           +     + V  +      + V A+       + +  ++  +  L  AH ++P+ 
Sbjct: 86  ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 139

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 7/59 (11%), Positives = 20/59 (33%)

Query: 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
                +     + V  +      + V A+       + +  ++  +  L  AH ++P+ 
Sbjct: 319 GKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 377

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 8/59 (13%), Positives = 20/59 (33%)

Query: 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
                +     + V  +      + V A+   G   + +  ++  +  L  AH ++P  
Sbjct: 285 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 343

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 8/59 (13%), Positives = 21/59 (35%)

Query: 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
                +     + V  +      + V A+   G   + +  ++  +  L  AH ++P+ 
Sbjct: 353 GKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ 411

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 8/59 (13%), Positives = 20/59 (33%)

Query: 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
                +     + V  +      + V A+   G   + +  ++  +  L  AH ++P  
Sbjct: 183 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 241

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 8/63 (12%), Positives = 18/63 (28%)

Query: 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182
                +     + V  +      + V A+   G     +  +   +S    A     +D 
Sbjct: 421 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDH 480

Query: 183 TIA 185
            +A
Sbjct: 481 LVA 483

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 7/59 (11%), Positives = 19/59 (32%)

Query: 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
                +     + V  +      + V A+       + +  ++  +  L  AH ++P  
Sbjct: 251 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.9 bits (96), Expect = 9e-04
 Identities = 17/120 (14%), Positives = 37/120 (30%), Gaps = 18/120 (15%)

Query: 62  AQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM 121
              +++++ A+ L  +     +       LQ   L    L  I    G T + A      
Sbjct: 4   HHHHHQWSGARAL--EALLTVAGELRGPPLQ---LDTGQLLKIAKRGGVTAVEA------ 52

Query: 122 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
                   +   +      L    + V A+       + +  ++  +  L  AH ++P  
Sbjct: 53  -----VHAWRNALT--GAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 105

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 9/122 (7%)

Query: 74  LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 133
           L       Y  G + +A   +    + L  +   + R  L   +     C     QYD  
Sbjct: 24  LYSLAFNQYQSGXYEDAHXVF----QALCVLDHYDSRFFLGLGA-----CRQAMGQYDLA 74

Query: 134 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 193
           I   S     D    +  +   +     G L EA S L  A E+  +     ++      
Sbjct: 75  IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS 134

Query: 194 IL 195
           +L
Sbjct: 135 ML 136

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 13/122 (10%), Positives = 33/122 (27%), Gaps = 15/122 (12%)

Query: 65  NYEFNA------AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSL 118
           +Y F A       +   ++G  +      + A   +    +  +     E    L     
Sbjct: 5   DYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSL----- 57

Query: 119 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178
                  + ++    I   +     D K++        ++ +      A++ L       
Sbjct: 58  --GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115

Query: 179 PD 180
           P 
Sbjct: 116 PQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 11/59 (18%), Positives = 20/59 (33%)

Query: 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
             LK     E       V   + +  +A    G    +  +   A+  L++A  + P D
Sbjct: 26  SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 84

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 44.4 bits (106), Expect = 5e-06
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
                  Y E I +  + +  D +  K    +G+A  ++ R EEAV   +    V  D+
Sbjct: 15  LQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE 73

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 14/110 (12%), Positives = 32/110 (29%), Gaps = 17/110 (15%)

Query: 77  QGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 133
           +G   Y  G ++ ++  +  A             +G+ L               ++Y+E 
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALY------------NLERYEEA 59

Query: 134 IKVGSEVLAY--DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
           +   + V+    D  N      +  A + I   E          ++    
Sbjct: 60  VDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 20/155 (12%), Positives = 37/155 (23%), Gaps = 15/155 (9%)

Query: 65  NYEFNAAKMLKKQGNELYSEGRFSNALQKY---LLAKKNLQGIHSSEGRTLLLACSLNSM 121
                      ++G     EG   NA+  +   +             G T          
Sbjct: 58  ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-------- 109

Query: 122 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
               + +Q    I      L     N  AL     ++ +     +A   L +    +P  
Sbjct: 110 ----ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY 165

Query: 182 GTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEV 216
             +     +                LL + +  EV
Sbjct: 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEV 200

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 16/132 (12%), Positives = 38/132 (28%), Gaps = 6/132 (4%)

Query: 51  EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIH-SSEG 109
              + + + +D     +    +M K+          + +            +G     E 
Sbjct: 5   RAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSAT-----YDKGYQFEEEN 59

Query: 110 RTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS 169
                          L+       + +    +  D K+++A    G    +  +   A+S
Sbjct: 60  PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS 119

Query: 170 DLSNAHEVSPDD 181
            L    E+ PD+
Sbjct: 120 ALRRCLELKPDN 131

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.1 bits (114), Expect = 7e-06
 Identities = 8/63 (12%), Positives = 20/63 (31%)

Query: 119 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178
           ++       +     + V  +        V A+       + +  ++  +  L  AH + 
Sbjct: 197 SNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLP 256

Query: 179 PDD 181
           PD 
Sbjct: 257 PDQ 259

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.1 bits (114), Expect = 8e-06
 Identities = 9/54 (16%), Positives = 20/54 (37%)

Query: 128 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
           +     + V  +        V A+   G   + +  ++  +  L  AH ++PD 
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQ 327

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 8/63 (12%), Positives = 22/63 (34%)

Query: 119 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 178
           +++      +     + V  +        V A+       + +  ++  +  L  AH ++
Sbjct: 604 SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 663

Query: 179 PDD 181
           PD 
Sbjct: 664 PDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 8/58 (13%), Positives = 19/58 (32%)

Query: 124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
               +     + V  +        V A+       + +  ++  +  L  AH ++PD 
Sbjct: 304 KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 361

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.8 bits (108), Expect = 4e-05
 Identities = 8/58 (13%), Positives = 19/58 (32%)

Query: 124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
               +     + V  +        V A+       + +  ++  +  L  AH ++PD 
Sbjct: 236 KQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ 293

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 9/59 (15%), Positives = 20/59 (33%)

Query: 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
                +     + V  +        V A+   G   + +  ++  +  L  AH ++PD 
Sbjct: 337 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 7/58 (12%), Positives = 19/58 (32%)

Query: 124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
               +     + V  +        V A+   G   + +  ++  +  L  AH ++ + 
Sbjct: 643 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQ 700

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 12/113 (10%), Positives = 28/113 (24%), Gaps = 10/113 (8%)

Query: 69  NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 128
           +    +   G    +       L     A           G T     ++ S       +
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLCQAH----------GLTPDQVVAIASNGGKQALE 409

Query: 129 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
                + V  +        V A+       + +  ++  +  L   H ++P  
Sbjct: 410 TVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQ 462

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 7/54 (12%), Positives = 18/54 (33%)

Query: 128 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
           +     + V  +        V A+       + +  ++  +  L  AH ++P  
Sbjct: 579 ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ 632

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.6 bits (97), Expect = 6e-04
 Identities = 9/59 (15%), Positives = 19/59 (32%)

Query: 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
                      + V  +        V A+   G   + +  ++  +  L  AH ++PD 
Sbjct: 506 GKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 564

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 7/54 (12%), Positives = 18/54 (33%)

Query: 128 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
           +     + V  +        V A+   G   + +  ++  +  L  AH ++   
Sbjct: 545 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQ 598

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 8/103 (7%)

Query: 85  GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDECIKVGSEVLAY 143
           G  + A+  Y  A   +      +      A     + S +    +Y +   V +  +  
Sbjct: 4   GLEAQAVPYYEKA---IASGLQGKDL----AECYLGLGSTFRTLGEYRKAEAVLANGVKQ 56

Query: 144 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD 186
              +            ++GR E+ V  L      + DD TI  
Sbjct: 57  FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 15/107 (14%)

Query: 78  GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134
            N L S      AL  Y  A     +    +   G              Y+  + Y E  
Sbjct: 64  ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV------------YVVKEMYKEAK 111

Query: 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
            +  + L    +N    Y  G     + + + A+  L  A E++ +D
Sbjct: 112 DMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 22/107 (20%), Positives = 31/107 (28%), Gaps = 15/107 (14%)

Query: 78  GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134
           G  L    +   AL     A    +N        G             C       DE +
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG------------MCLANEGMLDEAL 179

Query: 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
              + V   D  +  A Y  G  Y      E+A+  L  A ++ PD 
Sbjct: 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 6/58 (10%), Positives = 20/58 (34%)

Query: 124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
             +   Y++  +  ++ +  + ++             +  LE A++    A E+    
Sbjct: 33  GSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA 90

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 10/59 (16%), Positives = 19/59 (32%)

Query: 124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182
           Y + +Q+D  +      L +D     A    G+  +  G    A     +    +   G
Sbjct: 29  YAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG 87

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 139 EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
            +LA    N+   +  G+ Y +  + + A+  L  A +  P 
Sbjct: 10  AMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT 51

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 13/106 (12%), Positives = 25/106 (23%), Gaps = 10/106 (9%)

Query: 78  GNELYSE-GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDECIK 135
           G  L     R + ++  +  A  +                +  +   C  K  Q+     
Sbjct: 83  GWFLCGRLNRPAESMAYFDKALADPTYPTPYI--------ANLNKGICSAKQGQFGLAEA 134

Query: 136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
                LA   +   A     +     G+L +A              
Sbjct: 135 YLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL 180

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 13/59 (22%), Positives = 24/59 (40%)

Query: 124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 182
           Y++ + Y +      + L  D KN  A   R + Y+ +   ++A      A  + PD  
Sbjct: 18  YMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA 76

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 9/103 (8%)

Query: 78  GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 137
            + L  +G+   AL  Y  A + +    +            N  +   + +     ++  
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIR-ISPTFA--------DAYSNMGNTLKEMQDVQGALQCY 100

Query: 138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
           +  +  +     A       +KD G + EA++    A ++ PD
Sbjct: 101 TRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 13/121 (10%)

Query: 78  GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 137
            N    +G    A++ Y  A +      +            N  S   +  +  E +   
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAA---------AHSNLASVLQQQGKLQEALMHY 66

Query: 138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT----IADVLRDAKE 193
            E +        A    G   K++  ++ A+   + A +++P        +A + +D+  
Sbjct: 67  KEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN 126

Query: 194 I 194
           I
Sbjct: 127 I 127

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 23/154 (14%), Positives = 41/154 (26%), Gaps = 24/154 (15%)

Query: 61  DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQ---KYLLAKKNLQGIHSSEGRTLLLACS 117
           +        A+  L        +      A++        K  L          L     
Sbjct: 173 EFTSGLA-IASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL-------ALKL----- 219

Query: 118 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177
                   + ++  E  K+  E L         L    + Y+     ++A+  L  A E 
Sbjct: 220 ---HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276

Query: 178 SPDDGT----IADVLRDAKEILMKEDGHHGPRGL 207
            P++      I    R AK   +     +G  G 
Sbjct: 277 IPNNAYLHCQIGCCYR-AKVFQVMNLRENGMYGK 309

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 10/123 (8%)

Query: 69  NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 128
             A M        + +G+   AL+    A++ +Q  H+ +     L    N    Y    
Sbjct: 49  FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG 108

Query: 129 QYDECIKVGSEVL--------AYDAKNVKALYRRGQAYKDIG--RLEEAVSDLSNAHEVS 178
           +  +      +V          Y  ++ +     G      G  + E A      A E  
Sbjct: 109 RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168

Query: 179 PDD 181
           P +
Sbjct: 169 PKN 171

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 43.6 bits (104), Expect = 4e-05
 Identities = 21/107 (19%), Positives = 32/107 (29%), Gaps = 15/107 (14%)

Query: 78  GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134
           G      GR+S A+               +    G   +            KT   D   
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYV------------KTGAVDRGT 62

Query: 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
           ++    LA    NVK     G  Y  + + + AV  L    E +P +
Sbjct: 63  ELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 42.8 bits (102), Expect = 7e-05
 Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 15/107 (14%)

Query: 78  GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134
           G      G      +    +     +   + +  G T +            + ++YD  +
Sbjct: 49  GIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV------------QVQKYDLAV 96

Query: 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
            +  +V   +  N    +R G A  ++GR +EA+     A  + P++
Sbjct: 97  PLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 17/107 (15%), Positives = 30/107 (28%), Gaps = 15/107 (14%)

Query: 78  GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134
           G       ++  A+   +           +    G  L                ++DE I
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD------------NLGRFDEAI 130

Query: 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
                 L       K       +Y+ +GR EEA+     A+E+    
Sbjct: 131 DSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 13/106 (12%), Positives = 30/106 (28%), Gaps = 4/106 (3%)

Query: 78  GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134
                  G  + AL+             G +       + A    +          ++ +
Sbjct: 46  ARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV-ALYRQAEDRERGKGYLEQAL 104

Query: 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
            V  +    + +      +RG  Y  +G  ++A + L  A  +   
Sbjct: 105 SVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT 150

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 9/58 (15%), Positives = 22/58 (37%)

Query: 124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
                +YD  + +    L  + ++ +ALY   +    +G +  A+ +       +P  
Sbjct: 15  LYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY 72

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 13/113 (11%), Positives = 31/113 (27%), Gaps = 10/113 (8%)

Query: 63  QMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM- 121
              Y     + L            +  AL     A +    +         +A SL ++ 
Sbjct: 174 HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALE----LAMDIQNDRFIAISLLNIA 229

Query: 122 SCYLKTKQYDECIKVGSEVLAYDAKN-----VKALYRRGQAYKDIGRLEEAVS 169
           + Y ++      ++   +      +       K L+         G+ ++A  
Sbjct: 230 NSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ 282

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 13/118 (11%)

Query: 59  RIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSL 118
           +  +  +   +    L  +G  L + G     +  +  A +       +       +   
Sbjct: 36  QQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTL------SAIY 89

Query: 119 NSM-SCYLKTKQYDECIKVGSEVLA-----YDAKNV-KALYRRGQAYKDIGRLEEAVS 169
           + + + Y     Y++ ++     L       D     K+    G   K +GR +EA  
Sbjct: 90  SQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAI 147

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 20/164 (12%), Positives = 49/164 (29%), Gaps = 17/164 (10%)

Query: 46  ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKY----LLAKKNL 101
             AS +        +  ++      ++     G     +  +SN+L  Y     L  +N 
Sbjct: 19  QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA 78

Query: 102 QGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI 161
           + ++++    L                   +   +  + LA D+  + AL          
Sbjct: 79  E-LYAALATVLYYQA---------SQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQ 128

Query: 162 GRLEEAVSDLSNAHEVSPDDGTIADVLR---DAKEILMKEDGHH 202
               +A+       +++        ++     AK +  + D  H
Sbjct: 129 ANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSDLEH 172

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 21/176 (11%), Positives = 47/176 (26%), Gaps = 20/176 (11%)

Query: 23  LKCAAEQLTHTPPEEVAEIGEKLANA-----SPEEIATM---RARIDAQMNYEFNAAKML 74
           L+ A     +      A+  E+            E        + +  +      AA  L
Sbjct: 60  LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMAL 119

Query: 75  KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDEC 133
            +   +L      S A+  Y  A    +     E R    A  +       ++ +++DE 
Sbjct: 120 DR-AGKLMEPLDLSKAVHLYQQAAAVFEN----EERLRQAAELIGKASRLLVRQQKFDEA 174

Query: 134 IKVGSEVLAYDAKN------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 183
                +  +   +        K    +            A   +  ++ +    G+
Sbjct: 175 AASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGS 230

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 39.3 bits (93), Expect = 6e-04
 Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 15/106 (14%)

Query: 78  GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 134
           GN  Y +G +  A++ Y  A            + G                K   YDE I
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY------------KQGDYDEAI 55

Query: 135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
           +   + L  D ++ +A Y  G AY   G  +EA+     A E+ P 
Sbjct: 56  EYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 38.9 bits (92), Expect = 8e-04
 Identities = 19/58 (32%), Positives = 27/58 (46%)

Query: 124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
           Y K   YDE I+   + L  D ++ +A Y  G AY   G  +EA+     A E+ P  
Sbjct: 11  YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 16/119 (13%), Positives = 42/119 (35%), Gaps = 16/119 (13%)

Query: 66  YEFNAAKMLKKQGNELYSEGRFSNALQKY---LLAKKNLQGIHSSEGRTLLLACSLNSMS 122
           +E ++ +   ++  ++  +      LQ+    L + +        +G+ L          
Sbjct: 65  FETHSVEDAGRKQQDV--QEEMEKTLQQMEEVLGSAQVEAQALMLKGKAL---------- 112

Query: 123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
             +      E   + S+ +  + + V+A  + G+ Y   G +  A +  S A     + 
Sbjct: 113 -NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNK 170

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 129 QYDECIKVGSEVLAYDAKNV-KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
             +  ++   E L  +     +A Y  G AY+ +G  ++A+++  +A E++PD 
Sbjct: 15  DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 41.1 bits (97), Expect = 7e-04
 Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 13/106 (12%)

Query: 71  AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQ 129
              L  +G  L   G     +  +  A +       +       +   + + + Y     
Sbjct: 5   CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTL------SAIYSQLGNAYFYLHD 58

Query: 130 YDECIKVGSEVLA-----YDAKNV-KALYRRGQAYKDIGRLEEAVS 169
           Y + ++     L       D     KA    G   K +G  +EA+ 
Sbjct: 59  YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIV 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	559
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.83
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.78
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.77
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.72
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.72
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.72
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.7
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.68
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.68
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.66
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.65
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.65
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.64
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.64
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.64
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.63
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.63
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.62
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.58
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.58
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.58
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.58
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.58
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.58
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.57
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.57
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.56
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.56
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.56
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.55
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.55
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.55
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.54
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.54
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.54
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.53
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.53
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.5
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.5
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.49
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.49
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.48
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.46
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.45
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.45
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.45
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.44
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.44
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.44
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.44
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.44
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.44
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.43
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.43
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.43
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.43
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.42
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.42
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.42
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.42
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.41
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.41
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.4
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.4
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.4
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.4
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.4
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.4
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.4
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.39
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.39
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.39
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.39
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.39
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.39
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.38
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.38
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.38
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.38
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.38
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.35
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.35
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.34
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.33
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.33
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.33
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.33
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.33
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.32
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.3
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.29
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.29
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.28
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.27
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.26
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.25
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.24
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.24
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.24
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.23
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.23
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.22
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.22
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.21
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.21
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.2
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.2
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.19
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.19
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.18
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.18
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.17
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.17
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.16
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.15
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.14
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.14
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.14
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.13
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.12
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.11
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.1
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.09
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.09
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.09
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.09
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.07
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.06
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.06
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.05
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.05
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.04
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.03
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.03
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.02
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.02
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.01
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.01
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.01
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.01
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.0
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.0
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.0
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.99
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.99
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.98
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.98
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.97
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.97
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.97
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.96
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.96
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.96
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.95
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.95
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.95
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.94
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.92
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.91
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.9
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.9
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.9
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.89
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.87
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.86
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.82
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.82
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.81
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.79
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.78
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.77
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.77
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.77
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.77
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.76
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.74
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.73
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.71
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.65
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.6
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.59
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.58
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.57
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.54
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.52
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.52
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.47
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.43
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.4
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.4
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.36
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.33
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.27
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.25
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.24
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.19
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.18
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.17
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.16
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.03
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.99
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.95
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.94
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.79
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.79
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.79
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.75
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.7
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.66
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.65
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.6
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.54
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.43
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.19
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.9
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.9
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.85
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.73
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.55
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.45
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.42
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.25
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.88
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.81
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	93.25
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	92.39
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.05
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	91.37
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	91.14
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.05
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	90.9
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.12
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	90.09
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	89.73
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	89.66
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	88.04
2lnm_A	62	Protein TIC 40, chloroplastic; translocon, import,	87.81
2llw_A	71	Heat shock protein STI1; DP domain, alpha helix, c	87.65
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	87.54
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	87.51
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	86.75
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	84.29
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	84.08
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	83.97
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	83.67
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	82.84
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	82.23
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	80.15

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.83  E-value=1e-19  Score=161.68  Aligned_cols=115  Identities=19%  Similarity=0.295  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613           68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  147 (559)
Q Consensus        68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~  147 (559)
                      +..++.++++|+.+++.|+|++|+..|+++|+++|.++.         +|+++|.||.++|+|++|+.+|+++|+++|++
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   80 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI---------LYSNRAACLTKLMEFQRALDDCDTCIRLDSKF   80 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence            334999999999999999999999999999999998865         99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613          148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  191 (559)
Q Consensus       148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a  191 (559)
                      +.+|+++|.+|..+|++++|+.+|+++++++|++..++..|+.+
T Consensus        81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999888765

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.78  E-value=7.1e-19  Score=163.50  Aligned_cols=130  Identities=15%  Similarity=0.204  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch---hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Q 008613           68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE---GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-  143 (559)
Q Consensus        68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e---~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l-  143 (559)
                      +..+..++++|+.+++.|+|++|+..|++||+++|.++..+   .......+|+|+|.|+.++|+|++|+.+|+++|++ 
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~   87 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            44588999999999999999999999999999999965422   12234559999999999999999999999999999 


Q ss_pred             ------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          144 ------DAKNVKAL----YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       144 ------dP~~~kal----~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                            +|+++++|    +++|.+|..+|+|++|+.+|+++++++|++..+...+..+++.+..
T Consensus        88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~  151 (159)
T 2hr2_A           88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAID  151 (159)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHH
T ss_pred             hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence                  99999999    9999999999999999999999999999998887777777776654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.77  E-value=3.4e-18  Score=156.50  Aligned_cols=134  Identities=26%  Similarity=0.351  Sum_probs=117.9

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--------CCCCc-hhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ--------GIHSS-EGRTLLLACSLNSMSCYLKTKQYDECIKVG  137 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p--------~~~~~-e~~~l~~~~~~nlA~~ylklg~y~eAi~~~  137 (559)
                      .+..+..++.+|+.+++.|+|.+|+..|.++|.+.+        .++.. ........+|+|+|.||+++|+|++|+.+|
T Consensus         7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~   86 (162)
T 3rkv_A            7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS   86 (162)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            455689999999999999999999999999999832        22100 124456679999999999999999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHhhcC
Q 008613          138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG-TIADVLRDAKEILMKEDG  200 (559)
Q Consensus       138 ~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~-~a~~~L~~a~~~l~~~~~  200 (559)
                      +++|+++|+++++|+++|.+|..+|+|++|+.+|++++.++|+++ .+...|..+...+++...
T Consensus        87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~  150 (162)
T 3rkv_A           87 SEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKA  150 (162)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998 789999999988877654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.72  E-value=6.7e-17  Score=141.10  Aligned_cols=117  Identities=18%  Similarity=0.213  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k  149 (559)
                      .+..++.+|..+++.|+|++|+..|.+++.++|.++.         +|+++|.||.++|+|++|+.+|+++++++|+++.
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~   73 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR---------GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR   73 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Confidence            4788999999999999999999999999999998855         9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHH
Q 008613          150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVS------PDDGTIADVLRDAKEIL  195 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~dlekAl~l~------P~~~~a~~~L~~a~~~l  195 (559)
                      +|+++|.+|..+|++++|+.+|++++.++      |++..++..+..+...+
T Consensus        74 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           74 AYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999      99999999998887654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.72  E-value=5.7e-17  Score=147.81  Aligned_cols=135  Identities=5%  Similarity=-0.036  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCH
Q 008613           51 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  130 (559)
Q Consensus        51 ee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y  130 (559)
                      .++..+...++......+..+..++.+|.+|++.|+|++|+.+|.++|+++|.++.         +|+++|.||.++|+|
T Consensus        11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~---------a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A           11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK---------AHRFLGLLYELEENT   81 (150)
T ss_dssp             HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCH
T ss_pred             ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCch
Confidence            34455555666666666777889999999999999999999999999999999865         999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          131 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD-LSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       131 ~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~d-lekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                      ++|+..|+++++++|+++.+|+++|.+|..+|++++|+.. ++++++++|+++.++..+..+...
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~  146 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC  146 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988876 599999999999998877776544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.72  E-value=7.1e-17  Score=143.16  Aligned_cols=114  Identities=21%  Similarity=0.276  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613           68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  147 (559)
Q Consensus        68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~  147 (559)
                      .+.+..++++|+.+++.|+|++|+.+|++||+++|.++.         +|+|+|.||+++|+|++|+.+|+++|+++|++
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~---------~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNIT---------FYNNKAAVYFEEKKFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence            345888999999999999999999999999999998854         99999999999999999999999999999876


Q ss_pred             -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613          148 -------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  191 (559)
Q Consensus       148 -------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a  191 (559)
                             .++|+++|.+|..+++|++|+.+|++++.++|+ +++...|..+
T Consensus        76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l  125 (127)
T 4gcn_A           76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL  125 (127)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence                   468999999999999999999999999999885 5555555544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.70  E-value=1.8e-16  Score=146.11  Aligned_cols=107  Identities=11%  Similarity=0.085  Sum_probs=102.2

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      .+..+..++.+|.++++.|+|++|+..|++++.++|.++.         +|+++|.||..+|+|++|+..|+++++++|+
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~---------~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD---------YIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            4444999999999999999999999999999999999866         9999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613          147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  182 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~  182 (559)
                      ++.+|+++|.+|..+|++++|+.+|+++++++|+.+
T Consensus       103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999999999999875

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.68  E-value=4e-16  Score=142.91  Aligned_cols=121  Identities=20%  Similarity=0.197  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613           69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  148 (559)
Q Consensus        69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~  148 (559)
                      ..+..++.+|.+++..|+|++|+.+|.+++.++|.++.         +|+++|.||+.+|+|++|+.+|+++++++|+++
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~   79 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPI---------YLSNRAAAYSASGQHEKAAEDAELATVVDPKYS   79 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            45889999999999999999999999999999998755         999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHhh
Q 008613          149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT--IADVLRDAKEILMKE  198 (559)
Q Consensus       149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~--a~~~L~~a~~~l~~~  198 (559)
                      .+|+++|.+|..+|++++|+.+|++++.++|++..  +...+..++.++++.
T Consensus        80 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  131 (164)
T 3sz7_A           80 KAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA  131 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999877  556666666666543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.68  E-value=4.7e-16  Score=141.69  Aligned_cols=123  Identities=17%  Similarity=0.120  Sum_probs=111.6

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      .+..+..+..+|..++..|+|++|+..|.+++.++|.++.         +|+++|.||..+|+|++|+..|++++.++|+
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   87 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR---------FFLGLGACRQAMGQYDLAIHSYSYGAVMDIX   87 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            3444888999999999999999999999999999998865         8999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613          147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  198 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~  198 (559)
                      ++.+++++|.+|..+|++++|+.+|+++++++|+++........+...+...
T Consensus        88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l  139 (148)
T 2vgx_A           88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAI  139 (148)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999877666666666666543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.66  E-value=7.2e-16  Score=138.32  Aligned_cols=121  Identities=14%  Similarity=0.132  Sum_probs=110.6

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      .+.....++.+|..++..|+|++|+..|.+++.++|.++.         +|+++|.||..+|+|++|+..|++++.++|+
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR---------YFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            3444888999999999999999999999999999998865         8999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613          147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  196 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~  196 (559)
                      ++.+++.+|.+|..+|++++|+.+|++++.++|+++........+...+.
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  134 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE  134 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988776666666665554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.65  E-value=2.6e-15  Score=144.75  Aligned_cols=188  Identities=13%  Similarity=0.043  Sum_probs=141.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhCCChHHHHHHHHHH-HccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHc----
Q 008613           10 IATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE----   84 (559)
Q Consensus        10 ~A~e~mk~m~pedl~~a~e~l~~~~pee~~~~~~~~-~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~----   84 (559)
                      .+...++....++....++..-..+|+......... ......++..+...++..+...+..+..+..+|.++...    
T Consensus        11 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~   90 (217)
T 2pl2_A           11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQA   90 (217)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhh
Confidence            344444555566655555655555555443322211 111122344566666666677777789999999999999    


Q ss_pred             -------CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008613           85 -------GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA  157 (559)
Q Consensus        85 -------g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A  157 (559)
                             |+|++|+..|.++++++|.++.         +|+++|.+|..+|++++|+..|+++++++ +++.+++.+|.+
T Consensus        91 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~  160 (217)
T 2pl2_A           91 EDRERGKGYLEQALSVLKDAERVNPRYAP---------LHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL  160 (217)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred             hhhcccccCHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence                   9999999999999999998865         89999999999999999999999999999 999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccc
Q 008613          158 YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL  207 (559)
Q Consensus       158 ~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~  207 (559)
                      |..+|++++|+..|++++.++|++..++..++.+...+++.+++...+++
T Consensus       161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            99999999999999999999999999999999998888877766555443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.65  E-value=4.3e-15  Score=140.23  Aligned_cols=135  Identities=30%  Similarity=0.440  Sum_probs=121.5

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch-------hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE-------GRTLLLACSLNSMSCYLKTKQYDECIKVGSE  139 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e-------~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~  139 (559)
                      .+..+..++.+|+.++..|+|++|+.+|.+++.+.|.++...       ...+...+|+++|.||+.+|+|++|+.+|++
T Consensus        34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  113 (198)
T 2fbn_A           34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK  113 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            556688999999999999999999999999999988876321       1233357999999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 008613          140 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  201 (559)
Q Consensus       140 AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~  201 (559)
                      +++++|+++.+++++|.+|..+|++++|+.+|++++.++|++..++..+..+...+++..+.
T Consensus       114 al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~  175 (198)
T 2fbn_A          114 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKK  175 (198)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998776553

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.64  E-value=2.9e-15  Score=144.38  Aligned_cols=156  Identities=12%  Similarity=0.104  Sum_probs=141.1

Q ss_pred             HHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC
Q 008613           26 AAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIH  105 (559)
Q Consensus        26 a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~  105 (559)
                      ....+...+.++......++....|+.                  +..+..+|.+++..|+|++|+..|.++++++|.++
T Consensus        12 g~~~~~~g~~~~A~~~~~~al~~~p~~------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~   73 (217)
T 2pl2_A           12 GVQLYALGRYDAALTLFERALKENPQD------------------PEALYWLARTQLKLGLVNPALENGKTLVARTPRYL   73 (217)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTSSSC------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence            344556677778777777777777777                  89999999999999999999999999999999986


Q ss_pred             CchhhhhHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613          106 SSEGRTLLLACSLNSMSCYLKT-----------KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA  174 (559)
Q Consensus       106 ~~e~~~l~~~~~~nlA~~ylkl-----------g~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekA  174 (559)
                      .         +|+++|.+|...           |++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++
T Consensus        74 ~---------a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  144 (217)
T 2pl2_A           74 G---------GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQA  144 (217)
T ss_dssp             H---------HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             H---------HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            5         999999999999           99999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          175 HEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       175 l~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      ++++ +++.++..++.+...+++.+++...+++++
T Consensus       145 l~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al  178 (217)
T 2pl2_A          145 LALE-DTPEIRSALAELYLSMGRLDEALAQYAKAL  178 (217)
T ss_dssp             HHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             Hhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999 999999999999999988877666666665

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.64  E-value=2.8e-16  Score=179.06  Aligned_cols=149  Identities=14%  Similarity=0.088  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHH
Q 008613           52 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  131 (559)
Q Consensus        52 e~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~  131 (559)
                      ++..+...+++.++..+..+..+.++|.+|++.|+|++|+..|++||+++|.++.         +|+|+|.+|.++|+|+
T Consensus        24 ~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~---------a~~nLg~~l~~~g~~~   94 (723)
T 4gyw_A           24 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD---------AYSNMGNTLKEMQDVQ   94 (723)
T ss_dssp             CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHH
Confidence            4556667777777777777888888888888888888888888888888887754         8888888888888888


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          132 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       132 eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      +|++.|+++|+++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..|+.+...+++..++...+++++
T Consensus        95 ~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal  172 (723)
T 4gyw_A           95 GALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLV  172 (723)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888888888877776666666555

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.64  E-value=1.8e-15  Score=156.40  Aligned_cols=148  Identities=22%  Similarity=0.352  Sum_probs=129.3

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC------chhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613           65 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGS  138 (559)
Q Consensus        65 ~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~------~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~  138 (559)
                      ...+..+..++.+|+++++.|+|++|+.+|.+++.+.|.+..      .+...+...+|+|+|.||+++|+|++|+.+|+
T Consensus       141 ~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~  220 (336)
T 1p5q_A          141 EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN  220 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            346667999999999999999999999999999999998742      12344556799999999999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC-CCCccchhhhh
Q 008613          139 EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH-HGPRGLLIEEI  212 (559)
Q Consensus       139 ~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~-~~~~~~~i~e~  212 (559)
                      ++|+++|+++++|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+...+++...+ ...+++.+...
T Consensus       221 ~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  295 (336)
T 1p5q_A          221 KALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL  295 (336)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999988887654 33445554433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.63  E-value=1.8e-15  Score=172.53  Aligned_cols=132  Identities=14%  Similarity=0.107  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613           69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  148 (559)
Q Consensus        69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~  148 (559)
                      ..++.+.++|++|.+.|+|++|+.+|++||+++|.++.         +|+|+|.+|.++|+|++|+..|+++|+++|+++
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~---------a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~   77 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA---------AHSNLASVLQQQGKLQEALMHYKEAIRISPTFA   77 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            34888889999999999999999999999999888754         889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      .+|+++|.+|..+|++++|+.+|+++++++|++..++..|+.+...+++.+++...+++++
T Consensus        78 ~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al  138 (723)
T 4gyw_A           78 DAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL  138 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988888887776655555555

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.63  E-value=3.7e-15  Score=160.72  Aligned_cols=136  Identities=24%  Similarity=0.397  Sum_probs=119.4

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC------chhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613           65 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGS  138 (559)
Q Consensus        65 ~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~------~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~  138 (559)
                      ...+..+..++.+|+.+++.|+|.+|+.+|.+||.++|.++.      .+...+...+|+|+|.||+++++|++|+.+|+
T Consensus       262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~  341 (457)
T 1kt0_A          262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD  341 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            346677999999999999999999999999999999998742      12344557799999999999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613          139 EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  200 (559)
Q Consensus       139 ~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~  200 (559)
                      ++|+++|+++++|+++|.+|..+++|++|+.+|+++++++|++..++..++.+...+++...
T Consensus       342 ~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~  403 (457)
T 1kt0_A          342 KALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE  403 (457)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888877653

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.62  E-value=5.7e-15  Score=129.59  Aligned_cols=120  Identities=27%  Similarity=0.354  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k  149 (559)
                      .+..++..|..++..|+|++|+..|.+++.+.|.++.         +|+++|.||..+|+|++|+.+|.++++++|+++.
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~   78 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV---------YYTNRALCYLKMQQPEQALADCRRALELDGQSVK   78 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHH
Confidence            3778999999999999999999999999999988754         9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHhh
Q 008613          150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD-----DGTIADVLRDAKEILMKE  198 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~-----~~~a~~~L~~a~~~l~~~  198 (559)
                      +++++|.+|..+|++++|+..|++++.++|+     +..+...+..+.......
T Consensus        79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~  132 (137)
T 3q49_B           79 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS  132 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998     788888888887776543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.58  E-value=3.9e-14  Score=119.22  Aligned_cols=115  Identities=23%  Similarity=0.275  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k  149 (559)
                      .+..+...|..++..|+|++|+..|.+++...|.++.         +++++|.||...|+|++|+..+.++++++|+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~   73 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV---------LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK   73 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH---------HHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH
Confidence            3678899999999999999999999999999888754         8999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613          150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  193 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~  193 (559)
                      +++.+|.+|..+|++++|+..|++++.++|++..++..+..+..
T Consensus        74 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           74 GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999888877753

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.58  E-value=6.3e-14  Score=134.11  Aligned_cols=157  Identities=11%  Similarity=0.055  Sum_probs=115.4

Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 008613           23 LKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ  102 (559)
Q Consensus        23 l~~a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p  102 (559)
                      +.+....+...+.++......++....|+........  ...............+|.++++.|+|++|+..|.++++++|
T Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~--~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   85 (208)
T 3urz_A            8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWT--NVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP   85 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHH--HSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHh--hhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence            4455556666777777666666666666652211110  00000111233344599999999999999999999999999


Q ss_pred             CCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----------------------
Q 008613          103 GIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD----------------------  160 (559)
Q Consensus       103 ~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~----------------------  160 (559)
                      .++.         +|+++|.||...|+|++|+..|+++++++|+++.+|+++|.+|..                      
T Consensus        86 ~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (208)
T 3urz_A           86 NNVD---------CLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM  156 (208)
T ss_dssp             TCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH
T ss_pred             CCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch
Confidence            9865         999999999999999999999999999999999988888877643                      


Q ss_pred             -------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613          161 -------------IGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  191 (559)
Q Consensus       161 -------------lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a  191 (559)
                                   +|+|++|+.+|+++++++|++. +...+..+
T Consensus       157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i  199 (208)
T 3urz_A          157 QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKI  199 (208)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHHH
Confidence                         3467888999999999888743 44444444

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.58  E-value=7e-14  Score=119.64  Aligned_cols=122  Identities=25%  Similarity=0.246  Sum_probs=114.2

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      .+..+..+..+|..++..|+|++|+..|.+++.+.|.++.         +++++|.||...|+|++|+..+.++++++|+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   78 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV---------YFCNRAAAYSKLGNYAGAVQDCERAICIDPA   78 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence            4455889999999999999999999999999999887644         8999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                      ++.+++.+|.+|..+|++++|+..|++++.++|++..++..++.+...+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           79 YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999998887754

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.58  E-value=4.8e-15  Score=137.23  Aligned_cols=130  Identities=16%  Similarity=0.134  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      +..+.++|++++..|+|++|+..|+++|+++|.++.         +|+++|.||.++|++++|+..+.+++..+|+++.+
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   75 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVE---------TLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA   75 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHH
Confidence            456667777777777777777777777777776644         67777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      ++.+|.++...+++++|+..+++++.++|++..++..++.+...+++.+++...+++++
T Consensus        76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l  134 (184)
T 3vtx_A           76 YYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTI  134 (184)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            77777777777777777777777777777777777777777666665555444444433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.58  E-value=1.5e-14  Score=152.00  Aligned_cols=133  Identities=27%  Similarity=0.482  Sum_probs=118.2

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC-------chhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE  139 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~-------~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~  139 (559)
                      ....+..++.+|+.+++.|+|++|+.+|+++|++.+..+.       .........+|+|+|.||+++++|++|+.+|++
T Consensus       219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  298 (370)
T 1ihg_A          219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE  298 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            4556888999999999999999999999999996544210       013445677999999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 008613          140 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  199 (559)
Q Consensus       140 AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~  199 (559)
                      +|+++|+++++|+++|.+|..+|+|++|+.+|+++++++|++..++..+..++..+++.+
T Consensus       299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~  358 (370)
T 1ihg_A          299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK  358 (370)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988887654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.58  E-value=2.2e-14  Score=137.36  Aligned_cols=117  Identities=13%  Similarity=0.066  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHH----------------HHHHHHHcCCHHHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLN----------------SMSCYLKTKQYDECI  134 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~n----------------lA~~ylklg~y~eAi  134 (559)
                      ++.+..+|..++..|+|++|+.+|.+++.++|.++.         +|++                +|.||.+.|+|++|+
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~   74 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE---------MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAY   74 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH---------HHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH---------HHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHH
Confidence            567888999999999999999999999999887654         6666                999999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613          135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  196 (559)
Q Consensus       135 ~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~  196 (559)
                      ..|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+....+
T Consensus        75 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           75 LFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999998876554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.57  E-value=3.2e-14  Score=131.58  Aligned_cols=141  Identities=13%  Similarity=0.055  Sum_probs=122.2

Q ss_pred             HHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008613           60 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE  139 (559)
Q Consensus        60 l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~  139 (559)
                      ++..++..+..+..+..+|.+++..|+|++|+..|.+++...|..+.         ++.+++.++...++++.|+..+.+
T Consensus        28 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~a~~~~~~   98 (184)
T 3vtx_A           28 YKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE---------AYYILGSANFMIDEKQAAIDALQR   98 (184)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH---------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence            33333333444888999999999999999999999999999888754         888999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          140 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       140 AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      +++++|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.+...+++.+++...+++++
T Consensus        99 a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  168 (184)
T 3vtx_A           99 AIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKAL  168 (184)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998888877777777666

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.57  E-value=1.8e-14  Score=152.33  Aligned_cols=130  Identities=7%  Similarity=-0.053  Sum_probs=117.5

Q ss_pred             HHHHHHHhHHhHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 008613           57 RARIDAQMNYEFNAAKMLKKQGNELYSEGR-FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK  135 (559)
Q Consensus        57 ~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~-y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~  135 (559)
                      ...+...+...+.....|..+|.++...|+ |++|+..|.++|.++|.+..         +|+++|.||..+|+|++|+.
T Consensus       117 l~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~---------a~~~~g~~~~~~g~~~eAl~  187 (382)
T 2h6f_A          117 FKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ---------VWHHRRVLVEWLRDPSQELE  187 (382)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCCTTHHH
T ss_pred             HHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHccCHHHHHH
Confidence            333334444444449999999999999997 99999999999999999865         99999999999999999999


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       136 ~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                      +|+++|+++|++..+|++||.+|..+|++++|+.+|+++++++|++..++..++.+...+
T Consensus       188 ~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l  247 (382)
T 2h6f_A          188 FIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT  247 (382)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999998874

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.56  E-value=3.2e-14  Score=122.91  Aligned_cols=117  Identities=21%  Similarity=0.284  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k  149 (559)
                      .+..++.+|..++..|+|++|+.+|.+++.+.|.+..         +++++|.||...|+|++|+..|+++++++|+++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~   85 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK---------LYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK   85 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHH---------HHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH
Confidence            4788999999999999999999999999999887744         8999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                      +++.+|.+|..+|++++|+..|++++.++|++..++..++.+....
T Consensus        86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           86 GYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998888887655

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.56  E-value=3.2e-15  Score=154.82  Aligned_cols=143  Identities=30%  Similarity=0.431  Sum_probs=98.3

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC--------chhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS--------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGS  138 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~--------~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~  138 (559)
                      .+..+..++.+|+.+++.|+|.+|+.+|.+++.+.|.+..        .....+...+|+|+|.||+++++|++|+.+|+
T Consensus       175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~  254 (338)
T 2if4_A          175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN  254 (338)
T ss_dssp             HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5667889999999999999999999999999999876531        01122233599999999999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh-cCCCCCccchh
Q 008613          139 EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE-DGHHGPRGLLI  209 (559)
Q Consensus       139 ~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~-~~~~~~~~~~i  209 (559)
                      ++|+++|+++++|+++|.+|..+|+|++|+.+|++++.++|++..++..|..+....... +.+...+.+.+
T Consensus       255 ~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l  326 (338)
T 2if4_A          255 IVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIF  326 (338)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999998885554433 33344444444

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.56  E-value=9.7e-15  Score=154.37  Aligned_cols=136  Identities=8%  Similarity=-0.086  Sum_probs=127.4

Q ss_pred             HHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc
Q 008613           65 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-YDECIKVGSEVLAY  143 (559)
Q Consensus        65 ~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~-y~eAi~~~~~AL~l  143 (559)
                      .+.+..+..+...|.++...|+|++|+..|.++|.++|.+..         +|+++|.||..+|+ |++|+.+|+++|++
T Consensus        91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~---------a~~~~g~~l~~~g~d~~eAl~~~~~al~l  161 (382)
T 2h6f_A           91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT---------VWHFRRVLLKSLQKDLHEEMNYITAIIEE  161 (382)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHH---------HHHHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence            345667899999999999999999999999999999999865         99999999999997 99999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          144 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       144 dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      +|+++.+|++||.+|..+|++++|+.+|++++.++|++..++..++.+...+++..++...++++|
T Consensus       162 ~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al  227 (382)
T 2h6f_A          162 QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL  227 (382)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998887776677666

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.55  E-value=2.3e-15  Score=137.15  Aligned_cols=115  Identities=15%  Similarity=0.085  Sum_probs=104.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008613           77 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ  156 (559)
Q Consensus        77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~  156 (559)
                      +|..+..+|++++||..|.+++...|..+.         .++++|.||++.|+|++|+.+|+++|+++|+++.+|+.+|.
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~---------~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~   73 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSI---------KGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGL   73 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHT---------THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            678888999999999999999988777654         88999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613          157 AYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  200 (559)
Q Consensus       157 A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~  200 (559)
                      +|..+|++++|+.+|+++++++|+++.++..++.+....++..+
T Consensus        74 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  117 (150)
T 4ga2_A           74 LYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDG  117 (150)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred             HHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence            99999999999999999999999999999999999888876544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=7e-14  Score=123.28  Aligned_cols=117  Identities=32%  Similarity=0.492  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k  149 (559)
                      .+..++..|..++..|+|++|+.+|.+++.+.|.+      .....+|+++|.||...++|++|+..|+++++++|+++.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~  100 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK  100 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH
Confidence            37888999999999999999999999999987764      123569999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613          150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  192 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~  192 (559)
                      +++++|.+|..+|++++|+..|++++.++|++..++..+..+.
T Consensus       101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888777664

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.55  E-value=2.3e-14  Score=125.87  Aligned_cols=103  Identities=8%  Similarity=-0.033  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008613           72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL  151 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal  151 (559)
                      ..+..+|..+++.|+|++|+..|.+++.++|.++.         +|+++|.||...|++++|+..|+++++++|+++.++
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   88 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE---------AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH   88 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            34678999999999999999999999999999865         999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008613          152 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  183 (559)
Q Consensus       152 ~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~  183 (559)
                      +.+|.+|..+|++++|+..|+++++++|++..
T Consensus        89 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           89 AALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            99999999999999999999999999998753

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.54  E-value=1e-13  Score=120.14  Aligned_cols=117  Identities=12%  Similarity=0.084  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---H
Q 008613           72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---V  148 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---~  148 (559)
                      +.++.+|.+++..|+|++|+..|.+++...|.++.      ...+++++|.||...|+|++|+..|.++++++|++   +
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~   76 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY------TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAA   76 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccH
Confidence            45678999999999999999999999999888763      34589999999999999999999999999999999   8


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                      .+++.+|.+|..+|++++|+..|++++..+|+++.+...+..+...
T Consensus        77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998877666555443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.54  E-value=1.4e-13  Score=117.92  Aligned_cols=119  Identities=21%  Similarity=0.305  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--  147 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~--  147 (559)
                      .+..+..+|..++..|+|++|+.+|.+++.+.|.++.         +++++|.||...|+|++|+..|.+++.++|++  
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~   73 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT---------YITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE   73 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH---------HHHHHHHHHHHhccHHHHHHHHHHHHhhccccch
Confidence            4778999999999999999999999999999887744         89999999999999999999999999999887  


Q ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613          148 -----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  198 (559)
Q Consensus       148 -----~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~  198 (559)
                           +.+++++|.+|..+|++++|+..|++++.++| ++.++..+..+...+++.
T Consensus        74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence                 99999999999999999999999999999999 688888998888887654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.54  E-value=9.2e-14  Score=133.22  Aligned_cols=141  Identities=15%  Similarity=0.153  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHH
Q 008613           52 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  131 (559)
Q Consensus        52 e~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~  131 (559)
                      ++..+...++..+...+..+..+..+|.+++..|+|++|+..|.+++.+.|.++.  .......+|+++|.++..+|+|+
T Consensus        57 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~g~~~~~~~~~~  134 (228)
T 4i17_A           57 KYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNAT--IEKLYAIYYLKEGQKFQQAGNIE  134 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH--HHHHHHHHHHHHhHHHHHhccHH
Confidence            3445666667777777778999999999999999999999999999999998752  23334468999999999999999


Q ss_pred             HHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHhCCCCH
Q 008613          132 ECIKVGSEVLAYDAK--NVKALYRRGQAYKDIGRL---------------------------EEAVSDLSNAHEVSPDDG  182 (559)
Q Consensus       132 eAi~~~~~AL~ldP~--~~kal~~rG~A~~~lg~~---------------------------eeAi~dlekAl~l~P~~~  182 (559)
                      +|+..|+++++++|+  ++.+|+.+|.+|...|+.                           ++|+..|+++++++|++.
T Consensus       135 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~  214 (228)
T 4i17_A          135 KAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRT  214 (228)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCH
Confidence            999999999999999  999999999999999998                           999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 008613          183 TIADVLRDAKEI  194 (559)
Q Consensus       183 ~a~~~L~~a~~~  194 (559)
                      .+...+..++..
T Consensus       215 ~~~~~l~~i~~~  226 (228)
T 4i17_A          215 EIKQMQDQVKAM  226 (228)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            999888877643

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.53  E-value=3.3e-13  Score=121.28  Aligned_cols=116  Identities=22%  Similarity=0.336  Sum_probs=108.4

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      ....+..+..+|..++..|+|++|+..|.+++.+.|.++.         +++++|.||...|+|++|+..|.++++++|+
T Consensus         9 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   79 (166)
T 1a17_A            9 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI---------YYGNRSLAYLRTECYGYALGDATRAIELDKK   79 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            3456889999999999999999999999999999888754         8999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613          147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  191 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a  191 (559)
                      ++.+++.+|.+|..+|++++|+..|++++.++|++..++..+..+
T Consensus        80 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A           80 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999888666665

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.53  E-value=1.9e-13  Score=130.98  Aligned_cols=118  Identities=15%  Similarity=0.115  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV--  148 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~--  148 (559)
                      ...+...|.+++..|+|++|+..|.+++.+.|.++.         +|+++|.||..+|+|++|+..|+++++++|+++  
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  112 (228)
T 4i17_A           42 SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN---------AYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI  112 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH---------HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence            567777999999999999999999999999887644         899999999999999999999999999999998  


Q ss_pred             -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHh
Q 008613          149 -----KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAKEILMK  197 (559)
Q Consensus       149 -----kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~--~~~a~~~L~~a~~~l~~  197 (559)
                           .+|+.+|.++..+|++++|+..|+++++++|+  +..++..++.+....++
T Consensus       113 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~  168 (228)
T 4i17_A          113 EKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA  168 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH
Confidence                 67999999999999999999999999999999  88999999988776654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.50  E-value=7.9e-13  Score=134.48  Aligned_cols=146  Identities=14%  Similarity=0.109  Sum_probs=125.3

Q ss_pred             HHHHHHhHHhHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 008613           58 ARIDAQMNYEFN--AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK  135 (559)
Q Consensus        58 ~~l~~~~~~~~~--~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~  135 (559)
                      ..+...+...+.  .+..+..+|.+++..|+|++|+..|.+++.+.|.++.         +|+++|.+|...|+|++|+.
T Consensus       202 ~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~l~~~~~~~g~~~~A~~  272 (368)
T 1fch_A          202 ELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL---------LWNKLGATLANGNQSEEAVA  272 (368)
T ss_dssp             HHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH---------HHHHHHHHHHHcCCHHHHHH
Confidence            333444444444  5788899999999999999999999999999888754         89999999999999999999


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHHHhhcCCCCC
Q 008613          136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-----------GTIADVLRDAKEILMKEDGHHGP  204 (559)
Q Consensus       136 ~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~-----------~~a~~~L~~a~~~l~~~~~~~~~  204 (559)
                      .|+++++++|+++.+++.+|.+|..+|++++|+..|++++.++|++           ..++..++.+...+++.+.+..-
T Consensus       273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  352 (368)
T 1fch_A          273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  352 (368)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence            9999999999999999999999999999999999999999999988           88999999999999887765544


Q ss_pred             ccchhhhh
Q 008613          205 RGLLIEEI  212 (559)
Q Consensus       205 ~~~~i~e~  212 (559)
                      +.+.++.+
T Consensus       353 ~~~~l~~~  360 (368)
T 1fch_A          353 DARDLSTL  360 (368)
T ss_dssp             HTTCHHHH
T ss_pred             HHHHHHHH
Confidence            44444433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.50  E-value=8.4e-13  Score=111.89  Aligned_cols=116  Identities=28%  Similarity=0.393  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      +..+...|.+++..|+|++|+..|.+++...|.+..         ++++++.+|...|+|++|+..+.++++++|+++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~   79 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA   79 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHH
Confidence            677889999999999999999999999999887643         89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                      ++.+|.+|...|++++|+..|++++.++|++..++..++.+....
T Consensus        80 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           80 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999998888876543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.49  E-value=4e-13  Score=138.86  Aligned_cols=119  Identities=18%  Similarity=0.135  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      ...+..+|.++...|+|++|+..|.+++.+.|.++         .++++++.+|.+.|++++|+..|+++++++|+++.+
T Consensus       203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  273 (388)
T 1w3b_A          203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA---------VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA  273 (388)
T ss_dssp             HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence            33344444444444444444444444444444332         255566666666666666666666666666666666


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  198 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~  198 (559)
                      |+.+|.+|...|++++|+..|+++++++|++..++..++.+....++.
T Consensus       274 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  321 (388)
T 1w3b_A          274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI  321 (388)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Confidence            666666666666666666666666666666666555555555444433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.49  E-value=3.2e-12  Score=122.54  Aligned_cols=152  Identities=16%  Similarity=0.158  Sum_probs=125.4

Q ss_pred             hCCChHHHHHHHHHHHccCcH--------HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q 008613           31 THTPPEEVAEIGEKLANASPE--------EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ  102 (559)
Q Consensus        31 ~~~~pee~~~~~~~~~~~~pe--------e~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p  102 (559)
                      ...+.++......++....+.        ++..+...+.......+..+..+...|.+++..|+|++|+..|.+++.+.|
T Consensus        91 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~  170 (258)
T 3uq3_A           91 KLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP  170 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence            344555555555554444332        122333444444456677888999999999999999999999999999988


Q ss_pred             CCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Q 008613          103 GIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS----  178 (559)
Q Consensus       103 ~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~----  178 (559)
                      .++.         +|+++|.||...|+|++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|+++++++    
T Consensus       171 ~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  241 (258)
T 3uq3_A          171 EDAR---------GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN  241 (258)
T ss_dssp             TCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc
Confidence            8754         899999999999999999999999999999999999999999999999999999999999999    


Q ss_pred             --CCCHHHHHHHHHH
Q 008613          179 --PDDGTIADVLRDA  191 (559)
Q Consensus       179 --P~~~~a~~~L~~a  191 (559)
                        |++..++..|..+
T Consensus       242 ~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          242 NGSSAREIDQLYYKA  256 (258)
T ss_dssp             TTTTHHHHHHHHHHT
T ss_pred             CCCchHHHHHHHHHh
Confidence              9988888877654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.48  E-value=5.8e-13  Score=130.72  Aligned_cols=150  Identities=13%  Similarity=0.031  Sum_probs=124.7

Q ss_pred             HHHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 008613           25 CAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGI  104 (559)
Q Consensus        25 ~a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~  104 (559)
                      .....+...+.++......++....|..               ...+..++.+|.+++..|+|++|+..|.+++.+.|.+
T Consensus        21 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~   85 (261)
T 3qky_A           21 RAMEFYNQGKYDRAIEYFKAVFTYGRTH---------------EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID   85 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHGGGCSCS---------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCCC---------------cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence            3444455566666666666555554433               1227789999999999999999999999999999887


Q ss_pred             CCchhhhhHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCHHHH-----------------HHHHHHHH
Q 008613          105 HSSEGRTLLLACSLNSMSCYLK--------TKQYDECIKVGSEVLAYDAKNVKAL-----------------YRRGQAYK  159 (559)
Q Consensus       105 ~~~e~~~l~~~~~~nlA~~ylk--------lg~y~eAi~~~~~AL~ldP~~~kal-----------------~~rG~A~~  159 (559)
                      +.      ...+++++|.||..        .|+|++|+..|+++++++|++..++                 +.+|.+|.
T Consensus        86 ~~------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~  159 (261)
T 3qky_A           86 PR------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYE  159 (261)
T ss_dssp             TT------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ch------hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            64      45689999999999        9999999999999999999986555                 89999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHH
Q 008613          160 DIGRLEEAVSDLSNAHEVSPD---DGTIADVLRDAKEIL  195 (559)
Q Consensus       160 ~lg~~eeAi~dlekAl~l~P~---~~~a~~~L~~a~~~l  195 (559)
                      ..|+|++|+..|++++..+|+   ...++..++.+...+
T Consensus       160 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  198 (261)
T 3qky_A          160 RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY  198 (261)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence            999999999999999999998   456888888888877

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.46  E-value=6.4e-13  Score=135.93  Aligned_cols=203  Identities=12%  Similarity=-0.049  Sum_probs=142.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhCCChHHHHHHHHHH-HccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcC
Q 008613            7 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG   85 (559)
Q Consensus         7 ~l~~A~e~mk~m~pedl~~a~e~l~~~~pee~~~~~~~~-~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g   85 (559)
                      .+..+...++....++....++.+-...|+......... ......++..+...++..+...+..+..+..+|.++...|
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  147 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS  147 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence            345555555555555555555544433333322211100 0001122334445555555555555777777888888888


Q ss_pred             CHHHHHHHHHHHHHhcCCCCCch-----------------------------------hhhh--HHHHHHHHHHHHHHcC
Q 008613           86 RFSNALQKYLLAKKNLQGIHSSE-----------------------------------GRTL--LLACSLNSMSCYLKTK  128 (559)
Q Consensus        86 ~y~eAi~~Y~kAL~l~p~~~~~e-----------------------------------~~~l--~~~~~~nlA~~ylklg  128 (559)
                      +|++|+..|.+++.+.|.+....                                   ....  ...+++++|.+|...|
T Consensus       148 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g  227 (365)
T 4eqf_A          148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG  227 (365)
T ss_dssp             CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence            88888888887777766432110                                   0000  3558999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccch
Q 008613          129 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL  208 (559)
Q Consensus       129 ~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~  208 (559)
                      +|++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++.++|++..++..++.+...+++..++...++++
T Consensus       228 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  307 (365)
T 4eqf_A          228 EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTA  307 (365)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998777666666655


Q ss_pred             h
Q 008613          209 I  209 (559)
Q Consensus       209 i  209 (559)
                      +
T Consensus       308 l  308 (365)
T 4eqf_A          308 L  308 (365)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.45  E-value=4.9e-13  Score=123.16  Aligned_cols=117  Identities=12%  Similarity=0.073  Sum_probs=105.2

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHc
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC-YLKTKQY--DECIKVGSEVLAY  143 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~-ylklg~y--~eAi~~~~~AL~l  143 (559)
                      .+..+..+..+|.+++..|+|++|+.+|.+++.+.|.++.         +++++|.+ |...|+|  ++|+..|.+++++
T Consensus        40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~la~~l~~~~~~~~~~~A~~~~~~al~~  110 (177)
T 2e2e_A           40 NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE---------LYAALATVLYYQASQHMTAQTRAMIDKALAL  110 (177)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHH---------HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence            3334788999999999999999999999999999998754         89999999 8899999  9999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613          144 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  192 (559)
Q Consensus       144 dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~  192 (559)
                      +|+++.+++.+|.+|...|++++|+..|++++.++|++......+..+.
T Consensus       111 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~  159 (177)
T 2e2e_A          111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN  159 (177)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence            9999999999999999999999999999999999998865554444443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.45  E-value=1.1e-12  Score=134.18  Aligned_cols=135  Identities=16%  Similarity=0.156  Sum_probs=117.2

Q ss_pred             HHHHHHHHhHHhHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHH
Q 008613           56 MRARIDAQMNYEFN--AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC  133 (559)
Q Consensus        56 a~~~l~~~~~~~~~--~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eA  133 (559)
                      +...++..+...+.  .+..+..+|.+++..|+|++|+..|.+++.+.|.++.         +|+++|.+|...|+|++|
T Consensus       196 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~g~~~~A  266 (365)
T 4eqf_A          196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS---------LWNRLGATLANGDRSEEA  266 (365)
T ss_dssp             HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHH
Confidence            33444444444444  5778999999999999999999999999999888754         899999999999999999


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHHhhc
Q 008613          134 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------------GTIADVLRDAKEILMKED  199 (559)
Q Consensus       134 i~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~------------~~a~~~L~~a~~~l~~~~  199 (559)
                      +..|+++++++|+++.+++.+|.+|..+|++++|+..|++++.++|++            ..++..|+.+...+++.+
T Consensus       267 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  344 (365)
T 4eqf_A          267 VEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE  344 (365)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence            999999999999999999999999999999999999999999999873            567888888887776543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.45  E-value=8.9e-13  Score=119.46  Aligned_cols=130  Identities=14%  Similarity=0.175  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      ...+...|.+++..|+|++|+..|.+++.+.|.++.         +++++|.+|...|++++|+..+.++++++|+++.+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  112 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK---------VATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV  112 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHH
Confidence            778889999999999999999999999999887644         89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      ++.+|.+|...|++++|+..|++++.++|++..++..++.+....++...+...+++.+
T Consensus       113 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  171 (186)
T 3as5_A          113 RFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN  171 (186)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888776665544444443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.44  E-value=5.5e-12  Score=123.67  Aligned_cols=195  Identities=13%  Similarity=0.058  Sum_probs=145.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhCCChHH---HHHHHHH-HHccCcHHHHHHHHHHHHHhHHhH---HHHHHHHHHHH
Q 008613            7 LMRIATENMKNMRPEDLKCAAEQLTHTPPEE---VAEIGEK-LANASPEEIATMRARIDAQMNYEF---NAAKMLKKQGN   79 (559)
Q Consensus         7 ~l~~A~e~mk~m~pedl~~a~e~l~~~~pee---~~~~~~~-~~~~~pee~~aa~~~l~~~~~~~~---~~a~~lk~~Gn   79 (559)
                      .+..|...++.-..++....++.+....|+.   ....... .......++..+...++..+...+   .....++.+|.
T Consensus        18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~   97 (261)
T 3qky_A           18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAM   97 (261)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence            3667777788888888877777776665543   2222221 111122345556666666665433   45788999999


Q ss_pred             HHHH--------cCCHHHHHHHHHHHHHhcCCCCCch--------hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008613           80 ELYS--------EGRFSNALQKYLLAKKNLQGIHSSE--------GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY  143 (559)
Q Consensus        80 ~~~k--------~g~y~eAi~~Y~kAL~l~p~~~~~e--------~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l  143 (559)
                      +++.        .|+|++|+..|.+++...|.++...        ........++++|.||.+.|+|++|+..|+++++.
T Consensus        98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  177 (261)
T 3qky_A           98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDA  177 (261)
T ss_dssp             HHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            9999        9999999999999999999876511        01111222389999999999999999999999999


Q ss_pred             CCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHhhcCC
Q 008613          144 DAK---NVKALYRRGQAYKDI----------GRLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEILMKEDGH  201 (559)
Q Consensus       144 dP~---~~kal~~rG~A~~~l----------g~~eeAi~dlekAl~l~P~~~---~a~~~L~~a~~~l~~~~~~  201 (559)
                      +|+   .+.+++++|.+|..+          |++++|+..|+++++.+|+++   .+...+..+...+++.++.
T Consensus       178 ~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~  251 (261)
T 3qky_A          178 YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD  251 (261)
T ss_dssp             CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence            998   568999999999988          999999999999999999985   4556666777777666543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.44  E-value=3.5e-13  Score=139.25  Aligned_cols=145  Identities=15%  Similarity=0.064  Sum_probs=122.4

Q ss_pred             HHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 008613           56 MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK  135 (559)
Q Consensus        56 a~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~  135 (559)
                      +...+...+...+..+..+..+|.++++.|+|++|+..|.+++.+.|.+..         +|++++.+|.+.|++++|+.
T Consensus        52 a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~g~~~~A~~  122 (388)
T 1w3b_A           52 SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID---------GYINLAAALVAAGDMEGAVQ  122 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHSCSSHHHH
T ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHH---------HHHHHHHHHHHcCCHHHHHH
Confidence            334444444455666888999999999999999999999999999888754         89999999999999999999


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       136 ~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      .|.++++++|++..++..+|.++..+|++++|+..|++++.++|++..++..++.+....++...+...+++.+
T Consensus       123 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  196 (388)
T 1w3b_A          123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV  196 (388)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888777666555444444443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.44  E-value=1.7e-12  Score=124.45  Aligned_cols=157  Identities=11%  Similarity=0.073  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHhHHhHHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc-----------------h
Q 008613           53 IATMRARIDAQMNYEFNA-------AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS-----------------E  108 (559)
Q Consensus        53 ~~aa~~~l~~~~~~~~~~-------a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~-----------------e  108 (559)
                      +..+...+...+...+..       +..+..+|.+++..|+|++|+..|.+++.+.|.....                 .
T Consensus        54 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~  133 (258)
T 3uq3_A           54 YETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAY  133 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHH
Confidence            344555555555544443       7899999999999999999999999999976541000                 0


Q ss_pred             hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008613          109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL  188 (559)
Q Consensus       109 ~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L  188 (559)
                      .......+++++|.+|...|+|++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|++++.++|++..++..+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  213 (258)
T 3uq3_A          134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK  213 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            12234568999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCccchh
Q 008613          189 RDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       189 ~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      +.+...+++.+.+...+++++
T Consensus       214 ~~~~~~~g~~~~A~~~~~~a~  234 (258)
T 3uq3_A          214 ATAQIAVKEYASALETLDAAR  234 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHH
Confidence            999999887776666666555

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.44  E-value=2.1e-13  Score=126.50  Aligned_cols=104  Identities=19%  Similarity=0.117  Sum_probs=94.4

Q ss_pred             HcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHH
Q 008613           83 SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY----------DECIKVGSEVLAYDAKNVKALY  152 (559)
Q Consensus        83 k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y----------~eAi~~~~~AL~ldP~~~kal~  152 (559)
                      +.++|++|+..|.++++++|.++.         +|+|+|.|+..++++          ++||..|++||+++|++..+|+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~ae---------a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~   84 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDAD---------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW   84 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHH
Confidence            446799999999999999999876         999999999999875          5999999999999999999999


Q ss_pred             HHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          153 RRGQAYKDIG-----------RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       153 ~rG~A~~~lg-----------~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                      ++|.+|..+|           +|++|+.+|++|++++|++...+..+..+.+..
T Consensus        85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~  138 (158)
T 1zu2_A           85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP  138 (158)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCH
Confidence            9999999885           899999999999999999998888877765544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.44  E-value=2.1e-13  Score=154.16  Aligned_cols=127  Identities=14%  Similarity=-0.010  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k  149 (559)
                      .+..+..+|.+++..|+|++|+..|+++++++|.+..         +|+++|.+|..+|+|++|+.+|+++++++|+++.
T Consensus       432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~  502 (681)
T 2pzi_A          432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR---------LVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA  502 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH
T ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            3555666666666666666666666666666665543         6666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCcc
Q 008613          150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG  206 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~  206 (559)
                      +|+++|.+|..+|+|++ +.+|+++++++|++..++..++.+...+++.+++...++
T Consensus       503 ~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~  558 (681)
T 2pzi_A          503 PKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD  558 (681)
T ss_dssp             HHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            66666666666666666 666666666666666666666666665555544333333

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.44  E-value=6.1e-13  Score=133.73  Aligned_cols=102  Identities=26%  Similarity=0.375  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      +..++.+|+.++..|+|++|+..|.+++.+.|.++.         +|+++|.||.++|+|++|+.+|+++++++|+++.+
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~   74 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV---------YYTNRALCYLKMQQPEQALADCRRALELDGQSVKA   74 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Confidence            678899999999999999999999999999998754         99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  181 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~  181 (559)
                      ++++|.+|..+|++++|+.+|++++.++|++
T Consensus        75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           75 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999976

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.43  E-value=1.5e-12  Score=129.42  Aligned_cols=149  Identities=13%  Similarity=0.100  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHH
Q 008613           54 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC  133 (559)
Q Consensus        54 ~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eA  133 (559)
                      ..+...++..+...+..+..+...|.+++..|+|++|+..|.+++.+.|.++.         +++++|.+|...|++++|
T Consensus       155 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~A  225 (327)
T 3cv0_A          155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ---------LWNKLGATLANGNRPQEA  225 (327)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHcCCHHHH
Confidence            34444455555555556788999999999999999999999999999888754         899999999999999999


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHHhhcCC
Q 008613          134 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD------------DGTIADVLRDAKEILMKEDGH  201 (559)
Q Consensus       134 i~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~------------~~~a~~~L~~a~~~l~~~~~~  201 (559)
                      +..|+++++++|+++.+++.+|.+|..+|++++|+..|++++.++|+            +..++..++.+...+++.+.+
T Consensus       226 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  305 (327)
T 3cv0_A          226 LDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV  305 (327)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence            99999999999999999999999999999999999999999999999            788999999999888877665


Q ss_pred             CCCccchhhh
Q 008613          202 HGPRGLLIEE  211 (559)
Q Consensus       202 ~~~~~~~i~e  211 (559)
                      ...+++.++.
T Consensus       306 ~~~~~~~l~~  315 (327)
T 3cv0_A          306 ELTYAQNVEP  315 (327)
T ss_dssp             HHHTTCCSHH
T ss_pred             HHHHHHHHHh
Confidence            5545444433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.43  E-value=4.4e-13  Score=151.65  Aligned_cols=132  Identities=14%  Similarity=0.021  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH
Q 008613           53 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  132 (559)
Q Consensus        53 ~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e  132 (559)
                      +..+...++..++..+..+..+..+|.+++..|+|++|+..|+++++++|.++.         +|+++|.||.++|+|++
T Consensus       449 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~---------~~~~lg~~~~~~g~~~~  519 (681)
T 2pzi_A          449 VAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA---------PKLALAATAELAGNTDE  519 (681)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH---------HHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHcCChHH
Confidence            344556666666667777899999999999999999999999999999999876         99999999999999999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                       +.+|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+...
T Consensus       520 -~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          520 -HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             -TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             -HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence             9999999999999999999999999999999999999999999999999999888887644

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.43  E-value=4e-13  Score=145.26  Aligned_cols=162  Identities=14%  Similarity=0.029  Sum_probs=132.4

Q ss_pred             hCCCh-HHHHHHHHHHHccCcHHHH----------------HHHHHHHHHhHHhHHHHHHHHHHHHHHHHc---------
Q 008613           31 THTPP-EEVAEIGEKLANASPEEIA----------------TMRARIDAQMNYEFNAAKMLKKQGNELYSE---------   84 (559)
Q Consensus        31 ~~~~p-ee~~~~~~~~~~~~pee~~----------------aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~---------   84 (559)
                      ...+. ++......++....|....                .+...++..+...+. ...+..+|.+++..         
T Consensus       114 ~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~  192 (474)
T 4abn_A          114 VTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHS  192 (474)
T ss_dssp             SSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHH
T ss_pred             hccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhh
Confidence            34455 6666666666666655322                223344444444444 57788889999888         


Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCC---CCHHHHHH
Q 008613           85 GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT--------KQYDECIKVGSEVLAYDA---KNVKALYR  153 (559)
Q Consensus        85 g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl--------g~y~eAi~~~~~AL~ldP---~~~kal~~  153 (559)
                      |+|++|+..|.+++++.|.++.         +|+++|.+|..+        |+|++|+..|+++++++|   +++.+|++
T Consensus       193 g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  263 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQMDVLDGR---------SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN  263 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHH
Confidence            9999999999999999888754         999999999999        999999999999999999   99999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCC
Q 008613          154 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHH  202 (559)
Q Consensus       154 rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~  202 (559)
                      +|.+|..+|+|++|+.+|+++++++|++..++..++.+...+++..++.
T Consensus       264 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi  312 (474)
T 4abn_A          264 RATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL  312 (474)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988888765543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.43  E-value=1.6e-11  Score=123.03  Aligned_cols=122  Identities=28%  Similarity=0.399  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008613           73 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  152 (559)
Q Consensus        73 ~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~  152 (559)
                      .....|..+++.|+|++|+..|.+++...|.++     .....++.++|.||.+.|+|++|+..|+++++++|+++.+++
T Consensus       236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  310 (359)
T 3ieg_A          236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVA-----EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALK  310 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch-----HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHH
Confidence            345679999999999999999999999988763     234457889999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 008613          153 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  199 (559)
Q Consensus       153 ~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~  199 (559)
                      .+|.+|..+|++++|+.+|+++++++|++..++..|..++..+++.+
T Consensus       311 ~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  357 (359)
T 3ieg_A          311 DRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ  357 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999998887654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.42  E-value=2.7e-12  Score=122.41  Aligned_cols=148  Identities=14%  Similarity=0.071  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH
Q 008613           53 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  132 (559)
Q Consensus        53 ~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e  132 (559)
                      +..+...++..+...+.....+...|.+++..|+|++|+..|.+++++.|.++.         +++++|.+|...|++++
T Consensus        73 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~  143 (243)
T 2q7f_A           73 LERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGD---------LFYMLGTVLVKLEQPKL  143 (243)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHH---------HHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhccHHH
Confidence            334445555555555556788899999999999999999999999999887654         88999999999999999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      |+..+.++++++|+++.+++.+|.+|...|++++|+..|++++.++|++..++..++.+....++...+...+++.+
T Consensus       144 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  220 (243)
T 2q7f_A          144 ALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAI  220 (243)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998888776665544444444

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.42  E-value=5.7e-12  Score=125.35  Aligned_cols=140  Identities=16%  Similarity=0.155  Sum_probs=118.3

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613           55 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  134 (559)
Q Consensus        55 aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi  134 (559)
                      .+...+...+...+..+..+...|.+++..|+|++|+..|.+++.+.+.............+++++|.+|...|+|++|+
T Consensus       177 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  256 (330)
T 3hym_B          177 LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL  256 (330)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence            34444555555555568889999999999999999999999999998543322111222348999999999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       135 ~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                      ..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.+...
T Consensus       257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  316 (330)
T 3hym_B          257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEM  316 (330)
T ss_dssp             HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988887643

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.42  E-value=3.3e-13  Score=145.97  Aligned_cols=149  Identities=10%  Similarity=0.082  Sum_probs=133.6

Q ss_pred             HHH-HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc--
Q 008613           51 EEI-ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT--  127 (559)
Q Consensus        51 ee~-~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl--  127 (559)
                      .++ ..+...++..++..+..+..+..+|.+|+..|+|++|+.+|.+++++.|. +.         +|+++|.+|..+  
T Consensus       116 g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~---------~~~~lg~~~~~~~~  185 (474)
T 4abn_A          116 PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KV---------SLQNLSMVLRQLQT  185 (474)
T ss_dssp             SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HH---------HHHHHHHHHTTCCC
T ss_pred             cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HH---------HHHHHHHHHHHhcc
Confidence            344 56777777777777888999999999999999999999999999999776 23         899999999999  


Q ss_pred             -------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHH
Q 008613          128 -------KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI--------GRLEEAVSDLSNAHEVSP---DDGTIADVLR  189 (559)
Q Consensus       128 -------g~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~l--------g~~eeAi~dlekAl~l~P---~~~~a~~~L~  189 (559)
                             |+|++|+..|+++++++|+++.+|+++|.+|..+        |++++|+..|++++.++|   ++..++..++
T Consensus       186 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg  265 (474)
T 4abn_A          186 DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRA  265 (474)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHH
T ss_pred             CChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHH
Confidence                   9999999999999999999999999999999999        999999999999999999   9999999999


Q ss_pred             HHHHHHHhhcCCCCCccchh
Q 008613          190 DAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       190 ~a~~~l~~~~~~~~~~~~~i  209 (559)
                      .+...+++..++...+++++
T Consensus       266 ~~~~~~g~~~~A~~~~~~al  285 (474)
T 4abn_A          266 TLHKYEESYGEALEGFSQAA  285 (474)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHH
Confidence            99999887776655555554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.42  E-value=2.2e-13  Score=117.82  Aligned_cols=106  Identities=18%  Similarity=0.076  Sum_probs=88.7

Q ss_pred             HcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 008613           83 SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG  162 (559)
Q Consensus        83 k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg  162 (559)
                      ..|+|++|+.+|.+++++.+.+|.      ...+++++|.||..+|+|++|+..|+++++++|+++.+++++|.+|..+|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g   75 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKD------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLG   75 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCcc------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Confidence            368999999999999998422221      34599999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          163 RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       163 ~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                      ++++|+..|++++.++|+++.+......+...
T Consensus        76 ~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~  107 (117)
T 3k9i_A           76 RYEQGVELLLKIIAETSDDETIQSYKQAILFY  107 (117)
T ss_dssp             CHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            99999999999999999998876655444433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.41  E-value=8.1e-13  Score=124.62  Aligned_cols=128  Identities=16%  Similarity=0.090  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k  149 (559)
                      .+..++.+|..++..|+|++|+..|.+++.  + .         ..+|+++|.||...|+|++|+..|.++++++|+++.
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~--~-~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~   72 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQD--P-H---------SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV   72 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS--C-C---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC--C-C---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence            466788999999999999999999999952  2 2         348999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG----------------TIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~----------------~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      +|+++|.+|..+|++++|+.+|++++.+.|++.                .++..++.+...+++...+...+++++
T Consensus        73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  148 (213)
T 1hh8_A           73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT  148 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            999999999999999999999999999988876                889999999888877666554444444

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.41  E-value=3.9e-12  Score=123.63  Aligned_cols=114  Identities=20%  Similarity=0.065  Sum_probs=105.2

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      .+..+..+..+|.+++..|+|++|+..|.+++.+.|.++.         +|+++|.+|...|+|++|+..|.++++++|+
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~  109 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE---------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPT  109 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH---------HHHHHHHHHHHccCHHHHHHHHHHHHhcCcc
Confidence            3456889999999999999999999999999999888754         8999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613          147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR  189 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~  189 (559)
                      ++.+++.+|.+|..+|++++|+..|++++.++|++......+.
T Consensus       110 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  152 (275)
T 1xnf_A          110 YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY  152 (275)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            9999999999999999999999999999999999975544443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.40  E-value=6.5e-12  Score=119.74  Aligned_cols=131  Identities=15%  Similarity=0.130  Sum_probs=113.1

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613           55 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  134 (559)
Q Consensus        55 aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi  134 (559)
                      .+...+...++..+.....+...|.+++..|+|++|+..|.+++.+.|.++.         +++++|.+|.+.|+|++|+
T Consensus       109 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~  179 (243)
T 2q7f_A          109 EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE---------ARFQFGMCLANEGMLDEAL  179 (243)
T ss_dssp             HHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCCHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHcCCHHHHH
Confidence            3344444444444445778999999999999999999999999999887754         8999999999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       135 ~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                      ..+.++++++|+++.+++.+|.+|..+|++++|+..|++++.++|++..++..+..+...
T Consensus       180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~  239 (243)
T 2q7f_A          180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH  239 (243)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999988877766543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.40  E-value=3.2e-13  Score=146.59  Aligned_cols=129  Identities=20%  Similarity=0.254  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613           69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  148 (559)
Q Consensus        69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~  148 (559)
                      ..+..++.+|+.+++.|+|++|+.+|++++++.|.+..         +|+++|.||.++|+|++|+.+|+++++++|+++
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~   74 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI---------YYGNRSLAYLRTECYGYALGDATRAIELDKKYI   74 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence            34677888999999999999999999999999888754         999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHHHhhcCCCCCcc
Q 008613          149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA--KEILMKEDGHHGPRG  206 (559)
Q Consensus       149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a--~~~l~~~~~~~~~~~  206 (559)
                      .+|+++|.+|..+|++++|+..|+++++++|++..++..++.+  ....++.+++...++
T Consensus        75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           75 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999999999999999999888  555566666554444

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.40  E-value=7.4e-13  Score=145.49  Aligned_cols=134  Identities=12%  Similarity=0.026  Sum_probs=115.7

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      .+..+..+..+|.+++..|+|++|+..|++++++.|.++.         +|+++|.+|..+|+|++|+..|+++++++|+
T Consensus        19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   89 (568)
T 2vsy_A           19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE---------AVARLGRVRWTQQRHAEAAVLLQQASDAAPE   89 (568)
T ss_dssp             --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            3334788999999999999999999999999999888754         8999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---HhhcCCCCCccchh
Q 008613          147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL---MKEDGHHGPRGLLI  209 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l---~~~~~~~~~~~~~i  209 (559)
                      ++.+++++|.+|..+|++++|+..|+++++++|++..++..++.+...+   ++.+++...+++.+
T Consensus        90 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A           90 HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV  155 (568)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999888887   66555444444443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.40  E-value=4.6e-12  Score=118.84  Aligned_cols=121  Identities=12%  Similarity=-0.058  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--cCCCC
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-KQYDECIKVGSEVLA--YDAKN  147 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl-g~y~eAi~~~~~AL~--ldP~~  147 (559)
                      ...+...|.+++..|+|++|+..|.+++.+.|.+..         ++++++.+|... |++++|+..++++++  .+|.+
T Consensus        42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  112 (225)
T 2vq2_A           42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE---------INNNYGWFLCGRLNRPAESMAYFDKALADPTYPTP  112 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCH
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcch
Confidence            455566666666666666666666666666555432         566666666666 666666666666666  44555


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613          148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  200 (559)
Q Consensus       148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~  200 (559)
                      ..+++.+|.+|...|++++|+..|++++.++|++..++..++.+....++...
T Consensus       113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  165 (225)
T 2vq2_A          113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD  165 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence            66666666666666666666666666666666666666666666555554443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.40  E-value=1.8e-12  Score=128.96  Aligned_cols=145  Identities=8%  Similarity=-0.111  Sum_probs=126.8

Q ss_pred             HHHHHHHHhHHhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613           56 MRARIDAQMNYEFNAAKMLKKQGNELYSEG-RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  134 (559)
Q Consensus        56 a~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g-~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi  134 (559)
                      +...++..+...+..+..+...|.+++..| +|++|+.+|.+++.+.|.++.         +|+++|.+|...|+|++|+
T Consensus        75 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~  145 (330)
T 3hym_B           75 LFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP---------AWIAYGHSFAVESEHDQAM  145 (330)
T ss_dssp             HHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTH---------HHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHccCHHHHH
Confidence            344444445555556788999999999999 999999999999999988765         8999999999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       135 ~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      ..|.++++++|++..+++.+|.+|...|++++|+..|++++.++|++..++..++.+....++...+...+++.+
T Consensus       146 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  220 (330)
T 3hym_B          146 AAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL  220 (330)
T ss_dssp             HHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999888877665544444444

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.40  E-value=4.8e-14  Score=129.74  Aligned_cols=110  Identities=12%  Similarity=-0.018  Sum_probs=100.4

Q ss_pred             HHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613           92 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL  171 (559)
Q Consensus        92 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dl  171 (559)
                      ..|.+++.++|.++.         +++++|.+|++.|+|++|+..|+++++++|+++.+|+.+|.+|..+|+|++|+.+|
T Consensus        23 ~~l~~al~l~p~~~~---------~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~   93 (151)
T 3gyz_A           23 ATLKDINAIPDDMMD---------DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLY   93 (151)
T ss_dssp             CCTGGGCCSCHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHhCCCHHHHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHH
Confidence            446777777666644         89999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchhh
Q 008613          172 SNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIE  210 (559)
Q Consensus       172 ekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i~  210 (559)
                      ++++.++|+++.++..++.+...+++..++...+++++.
T Consensus        94 ~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A           94 AVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             HHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998887777777764

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.40  E-value=5.4e-12  Score=121.70  Aligned_cols=147  Identities=12%  Similarity=-0.002  Sum_probs=119.2

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613           55 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  134 (559)
Q Consensus        55 aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi  134 (559)
                      .+...+...++..+.....+...|.+++..|+|++|+.+|.+++. .+..+.      ...+++++|.+|...|++++|+
T Consensus        89 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~------~~~~~~~la~~~~~~g~~~~A~  161 (252)
T 2ho1_A           89 LADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPE------RSRVFENLGLVSLQMKKPAQAK  161 (252)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTT------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccCcc------cHHHHHHHHHHHHHcCCHHHHH
Confidence            344444444444555577888999999999999999999999998 222222      3458899999999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccch
Q 008613          135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL  208 (559)
Q Consensus       135 ~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~  208 (559)
                      ..+.++++++|.++.+++.+|.+|..+|++++|+..|++++.++|++..++..+..+....++.+.+...+++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~  235 (252)
T 2ho1_A          162 EYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL  235 (252)
T ss_dssp             HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888888887776655544333333

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.39  E-value=1.6e-12  Score=130.98  Aligned_cols=155  Identities=12%  Similarity=0.010  Sum_probs=128.3

Q ss_pred             HHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC
Q 008613           27 AEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS  106 (559)
Q Consensus        27 ~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~  106 (559)
                      ...+...+.++......++....|++                  +..+..+|.++...|++++|+..|.+++...|..  
T Consensus       125 ~~~~~~g~~~~A~~~~~~al~~~P~~------------------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~--  184 (287)
T 3qou_A          125 MQLMQESNYTDALPLLXDAWQLSNQN------------------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT--  184 (287)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTTSC------------------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH--
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcc------------------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch--
Confidence            33445555555555555555555555                  8899999999999999999999999999987743  


Q ss_pred             chhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHH
Q 008613          107 SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD--GTI  184 (559)
Q Consensus       107 ~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~--~~a  184 (559)
                             ...+.+.+..+...+++++|+..+++++.++|+++.+++.+|.+|...|++++|+..|++++.++|++  ..+
T Consensus       185 -------~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a  257 (287)
T 3qou_A          185 -------RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT  257 (287)
T ss_dssp             -------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred             -------HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence                   23666777888899999999999999999999999999999999999999999999999999999998  889


Q ss_pred             HHHHHHHHHHHHhhcCCCCCccch
Q 008613          185 ADVLRDAKEILMKEDGHHGPRGLL  208 (559)
Q Consensus       185 ~~~L~~a~~~l~~~~~~~~~~~~~  208 (559)
                      +..+..+...+++...+...+++.
T Consensus       258 ~~~l~~~~~~~g~~~~a~~~~r~a  281 (287)
T 3qou_A          258 RXTFQEILAALGTGDALASXYRRQ  281 (287)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHH
Confidence            999999999887665544444443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.39  E-value=4e-12  Score=122.67  Aligned_cols=158  Identities=10%  Similarity=-0.015  Sum_probs=124.5

Q ss_pred             HHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc
Q 008613           28 EQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS  107 (559)
Q Consensus        28 e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~  107 (559)
                      ..+...+.++......++....|..               ......+..+|.++++.|+|++|+..|.++++..|.++. 
T Consensus        13 ~~~~~g~~~~A~~~~~~~~~~~p~~---------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~-   76 (225)
T 2yhc_A           13 QKLQDGNWRQAITQLEALDNRYPFG---------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-   76 (225)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTS---------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-
Confidence            3444455555555555444443332               123578889999999999999999999999999998764 


Q ss_pred             hhhhhHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHcCCCCHHHH-----------------H
Q 008613          108 EGRTLLLACSLNSMSCYLK------------------TKQYDECIKVGSEVLAYDAKNVKAL-----------------Y  152 (559)
Q Consensus       108 e~~~l~~~~~~nlA~~ylk------------------lg~y~eAi~~~~~AL~ldP~~~kal-----------------~  152 (559)
                           ...+++++|.||..                  .|++++|+..|+++++.+|+++.++                 +
T Consensus        77 -----~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~  151 (225)
T 2yhc_A           77 -----IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEY  151 (225)
T ss_dssp             -----HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence                 34578889999886                  5799999999999999999987544                 6


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHhhcCCCCCcc
Q 008613          153 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEILMKEDGHHGPRG  206 (559)
Q Consensus       153 ~rG~A~~~lg~~eeAi~dlekAl~l~P~~~---~a~~~L~~a~~~l~~~~~~~~~~~  206 (559)
                      .+|.+|...|+|++|+..|+++++.+|+++   .++..++.+...+++...+...++
T Consensus       152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~  208 (225)
T 2yhc_A          152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAK  208 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            789999999999999999999999999986   578888888888877665444443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.39  E-value=8.8e-12  Score=126.68  Aligned_cols=156  Identities=10%  Similarity=-0.054  Sum_probs=131.2

Q ss_pred             HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchh------------------------
Q 008613           54 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG------------------------  109 (559)
Q Consensus        54 ~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~------------------------  109 (559)
                      ..+...+...+...+..+..+..+|.++...|+|++|+..|.+++.+.|.+.....                        
T Consensus       115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (368)
T 1fch_A          115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD  194 (368)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence            34455555555556666888999999999999999999999999998876543110                        


Q ss_pred             ----------------hhh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613          110 ----------------RTL--LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL  171 (559)
Q Consensus       110 ----------------~~l--~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dl  171 (559)
                                      ...  ...+++++|.+|...|+|++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|
T Consensus       195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  274 (368)
T 1fch_A          195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY  274 (368)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                            001  35688999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          172 SNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       172 ekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      ++++.++|++..++..++.+...+++...+...+++++
T Consensus       275 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  312 (368)
T 1fch_A          275 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL  312 (368)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999999999999999999999988777665555555

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.39  E-value=1.4e-11  Score=115.46  Aligned_cols=139  Identities=12%  Similarity=0.018  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH
Q 008613           54 ATMRARIDAQMNYEFNAAKMLKKQGNELYSE-GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  132 (559)
Q Consensus        54 ~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~-g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e  132 (559)
                      ..+...++..+...+.....+...|.+++.. |+|++|+..|.+++. .+..+.      ...+++++|.+|...|++++
T Consensus        59 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~------~~~~~~~l~~~~~~~~~~~~  131 (225)
T 2vq2_A           59 DKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPT------PYIANLNKGICSAKQGQFGL  131 (225)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSC------HHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcc------hHHHHHHHHHHHHHcCCHHH
Confidence            3444555555555555678899999999999 999999999999999 444443      34589999999999999999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHhhc
Q 008613          133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP-DDGTIADVLRDAKEILMKED  199 (559)
Q Consensus       133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P-~~~~a~~~L~~a~~~l~~~~  199 (559)
                      |+..+.++++++|+++.+++.+|.+|...|++++|+..|++++.++| ++..++..+..+....+..+
T Consensus       132 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (225)
T 2vq2_A          132 AEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQ  199 (225)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHH
Confidence            99999999999999999999999999999999999999999999999 99888877777766655443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.39  E-value=9.5e-13  Score=109.79  Aligned_cols=102  Identities=15%  Similarity=0.125  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--NV  148 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~--~~  148 (559)
                      +..+..+|.+++..|+|++|+.+|.+++.+.|.+..         +++++|.+|..+|+|++|+..++++++++|+  +.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   76 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESK---------YWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK   76 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH
Confidence            456778999999999999999999999999888754         8999999999999999999999999999999  99


Q ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 008613          149 KALYRRGQAYKDI-GRLEEAVSDLSNAHEVSPDD  181 (559)
Q Consensus       149 kal~~rG~A~~~l-g~~eeAi~dlekAl~l~P~~  181 (559)
                      .+++.+|.+|..+ |++++|+..|++++..+|.+
T Consensus        77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           77 DVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            9999999999999 99999999999999999975

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.39  E-value=2.7e-13  Score=119.97  Aligned_cols=97  Identities=11%  Similarity=0.034  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613          113 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  192 (559)
Q Consensus       113 ~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~  192 (559)
                      .+..|.++|.+|++.|+|++|+..|+++|+++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+.
T Consensus        12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~   91 (126)
T 4gco_A           12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            45589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCccchh
Q 008613          193 EILMKEDGHHGPRGLLI  209 (559)
Q Consensus       193 ~~l~~~~~~~~~~~~~i  209 (559)
                      ..+++.+++...+++++
T Consensus        92 ~~~~~~~~A~~~~~~al  108 (126)
T 4gco_A           92 VAMREWSKAQRAYEDAL  108 (126)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHH
Confidence            99998888777777766

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.38  E-value=2.3e-12  Score=125.49  Aligned_cols=193  Identities=15%  Similarity=0.031  Sum_probs=136.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhCCChHHHHHHHHH-HHccCcHHHHHHHHHHHHHhHHh---HHHHHHHHHHHHHHHH
Q 008613            8 MRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYE---FNAAKMLKKQGNELYS   83 (559)
Q Consensus         8 l~~A~e~mk~m~pedl~~a~e~l~~~~pee~~~~~~~-~~~~~pee~~aa~~~l~~~~~~~---~~~a~~lk~~Gn~~~k   83 (559)
                      ++.|...++....++....++.+-...|+........ .......++..+...++..+...   ...+..+..+|.+++.
T Consensus         7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~   86 (272)
T 3u4t_A            7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK   86 (272)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence            4555555566665555555554443443322111110 01111122333444444443311   1125568899999999


Q ss_pred             cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008613           84 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR  163 (559)
Q Consensus        84 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~  163 (559)
                      .|+|++|+..|.+++.+.|.++.         +|+++|.||...|+|++|+..|+++++++|+++.+++.+|..++..++
T Consensus        87 ~~~~~~A~~~~~~a~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~  157 (272)
T 3u4t_A           87 KGQDSLAIQQYQAAVDRDTTRLD---------MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKE  157 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCTH---------HHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTC
T ss_pred             cccHHHHHHHHHHHHhcCcccHH---------HHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999998865         899999999999999999999999999999999999999955555569


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh---hcCCCCCccchh
Q 008613          164 LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK---EDGHHGPRGLLI  209 (559)
Q Consensus       164 ~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~---~~~~~~~~~~~i  209 (559)
                      +++|+..|+++++++|++..++..++.+...+++   ...+...+++++
T Consensus       158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  206 (272)
T 3u4t_A          158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI  206 (272)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence            9999999999999999999999999999888866   333333444444

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.38  E-value=2.6e-12  Score=109.72  Aligned_cols=120  Identities=25%  Similarity=0.307  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008613           72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL  151 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal  151 (559)
                      ..+...|..++..|+|++|+..|.+++...|.+..         ++++++.+|...|++++|+..+.+++.++|.+..++
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   72 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW   72 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchh---------HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHH
Confidence            45677899999999999999999999998776543         788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613          152 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  200 (559)
Q Consensus       152 ~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~  200 (559)
                      +.+|.++...|++++|+..|++++.+.|++..++..++.+....++...
T Consensus        73 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  121 (136)
T 2fo7_A           73 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE  121 (136)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHH
Confidence            9999999999999999999999999999988888888877766554443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.38  E-value=6.9e-12  Score=126.16  Aligned_cols=139  Identities=11%  Similarity=-0.107  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC
Q 008613           68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-KQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl-g~y~eAi~~~~~AL~ldP~  146 (559)
                      ...+..+.+.|.+|...|+|++|+.+|.+++.+.+....   ......+|.++|.+|... |+|++|+.+|++++++.|.
T Consensus        74 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~  150 (292)
T 1qqe_A           74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ---FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ  150 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Confidence            345889999999999999999999999999999876543   223456899999999995 9999999999999999886


Q ss_pred             C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          147 N------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT-------IADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       147 ~------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~-------a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      +      ..++.++|.+|..+|+|++|+..|++++.++|++..       ++..++.+...+++...+...+++.+
T Consensus       151 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  226 (292)
T 1qqe_A          151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ  226 (292)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred             CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5      578999999999999999999999999999987643       45667777777766655544444444

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.38  E-value=2.6e-12  Score=125.11  Aligned_cols=144  Identities=12%  Similarity=0.020  Sum_probs=123.5

Q ss_pred             HHHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 008613           25 CAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGI  104 (559)
Q Consensus        25 ~a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~  104 (559)
                      .+...+...+.++......++....|..                  +..+..+|.+++..|+|++|+..|.+++. .+.+
T Consensus         9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~   69 (272)
T 3u4t_A            9 YADFLFKNNNYAEAIEVFNKLEAKKYNS------------------PYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNA   69 (272)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHTTCCC------------------STTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCT
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCc------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCc
Confidence            3444556666777776666666666665                  77889999999999999999999999999 4544


Q ss_pred             CCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008613          105 HSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI  184 (559)
Q Consensus       105 ~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a  184 (559)
                      +.     +...+|+++|.||...|+|++|+..|.++++++|+++.+++.+|.+|..+|++++|+..|++++.++|++..+
T Consensus        70 ~~-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  144 (272)
T 3u4t_A           70 TK-----AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV  144 (272)
T ss_dssp             TT-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHH
T ss_pred             hh-----HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHH
Confidence            33     2456799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH-HHH
Q 008613          185 ADVLR-DAK  192 (559)
Q Consensus       185 ~~~L~-~a~  192 (559)
                      +..++ .+.
T Consensus       145 ~~~l~~~~~  153 (272)
T 3u4t_A          145 FYELGQAYY  153 (272)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            99888 443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.38  E-value=4.6e-12  Score=122.18  Aligned_cols=136  Identities=10%  Similarity=-0.026  Sum_probs=119.0

Q ss_pred             HHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008613           62 AQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL  141 (559)
Q Consensus        62 ~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL  141 (559)
                      ..+...+..+..+...|.+++..|+|++|+..|.+++.+.|.+..         ++++++.+|...|+|++|+..|.+++
T Consensus        62 ~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~la~~~~~~g~~~~A~~~~~~~~  132 (252)
T 2ho1_A           62 KALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR---------VLNNYGGFLYEQKRYEEAYQRLLEAS  132 (252)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH---------HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            333333444788999999999999999999999999999887644         89999999999999999999999999


Q ss_pred             H--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCcc
Q 008613          142 A--YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG  206 (559)
Q Consensus       142 ~--ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~  206 (559)
                      +  .+|.++.+++.+|.+|...|++++|+..|++++.++|++..++..++.+....++...+...++
T Consensus       133 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  199 (252)
T 2ho1_A          133 QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYD  199 (252)
T ss_dssp             TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9  8899999999999999999999999999999999999999999999998888776555433333

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.35  E-value=6.1e-11  Score=124.06  Aligned_cols=123  Identities=29%  Similarity=0.403  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008613           72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL  151 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal  151 (559)
                      ..+...|..++..|+|++|+..|.+++.+.|.++     .....+|++++.+|.+.|++++|+..|+++++++|+++.+|
T Consensus       258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~  332 (450)
T 2y4t_A          258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIA-----EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL  332 (450)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH-----HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence            3445669999999999999999999999988753     23456899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 008613          152 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  199 (559)
Q Consensus       152 ~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~  199 (559)
                      +.+|.+|..+|++++|+.+|+++++++|++..++..++.+...+++..
T Consensus       333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  380 (450)
T 2y4t_A          333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ  380 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999999999999999999999988876654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.35  E-value=1.5e-12  Score=120.73  Aligned_cols=156  Identities=15%  Similarity=0.088  Sum_probs=119.1

Q ss_pred             HHHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 008613           25 CAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGI  104 (559)
Q Consensus        25 ~a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~  104 (559)
                      .+...+...+.++......++....|+                  .+..+..+|.+++..|+|++|+..|.+++.+.| +
T Consensus        12 ~a~~~~~~g~~~~A~~~~~~al~~~P~------------------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~   72 (176)
T 2r5s_A           12 QVSELLQQGEHAQALNVIQTLSDELQS------------------RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-D   72 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSCHHHHT------------------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCC------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C
Confidence            344445555566555555544444444                  489999999999999999999999999999988 5


Q ss_pred             CCchhhhhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 008613          105 HSSEGRTLLLACSLNSMSCY-LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD--  181 (559)
Q Consensus       105 ~~~e~~~l~~~~~~nlA~~y-lklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~--  181 (559)
                      +.         .+..++.+. ...+...+|+..++++++++|+++.+++.+|.+|...|++++|+..|+++++++|++  
T Consensus        73 ~~---------~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  143 (176)
T 2r5s_A           73 NS---------YKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD  143 (176)
T ss_dssp             HH---------HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT
T ss_pred             hH---------HHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh
Confidence            42         233334332 233345568999999999999999999999999999999999999999999999975  


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccch
Q 008613          182 GTIADVLRDAKEILMKEDGHHGPRGLL  208 (559)
Q Consensus       182 ~~a~~~L~~a~~~l~~~~~~~~~~~~~  208 (559)
                      ..++..++.+...+++..++...+++.
T Consensus       144 ~~a~~~l~~~~~~~g~~~~A~~~y~~a  170 (176)
T 2r5s_A          144 GEVKKTFMDILSALGQGNAIASKYRRQ  170 (176)
T ss_dssp             THHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            568999999988887665544444443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.34  E-value=4.5e-12  Score=122.30  Aligned_cols=110  Identities=13%  Similarity=0.141  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK-  149 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k-  149 (559)
                      +..++.+|..++..|+|++|+..|.+++...|..+.      ...+++++|.||++.|+|++|+..|+++++++|+++. 
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~   77 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI   77 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH
Confidence            567889999999999999999999999999887653      3458999999999999999999999999999999864 


Q ss_pred             --HHHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008613          150 --ALYRRGQAYKD------------------IGRLEEAVSDLSNAHEVSPDDGTIAD  186 (559)
Q Consensus       150 --al~~rG~A~~~------------------lg~~eeAi~dlekAl~l~P~~~~a~~  186 (559)
                        +++.+|.+|..                  .|++++|+..|+++++.+|+++.++.
T Consensus        78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~  134 (225)
T 2yhc_A           78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD  134 (225)
T ss_dssp             HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence              89999999986                  57899999999999999999875543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.33  E-value=4.3e-11  Score=118.80  Aligned_cols=202  Identities=11%  Similarity=-0.003  Sum_probs=149.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhCCChHHHHHHHHHH-HccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCC
Q 008613            8 MRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR   86 (559)
Q Consensus         8 l~~A~e~mk~m~pedl~~a~e~l~~~~pee~~~~~~~~-~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~   86 (559)
                      +..+...++....++....++.+....|+......... ......++..+...+...+...+.....+...|.++...|+
T Consensus        25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~  104 (327)
T 3cv0_A           25 MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN  104 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC
Confidence            56666666666666665555554444443322211110 01112233445555555555566667889999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCchh----------------------------------------hhhHHHHHHHHHHHHHH
Q 008613           87 FSNALQKYLLAKKNLQGIHSSEG----------------------------------------RTLLLACSLNSMSCYLK  126 (559)
Q Consensus        87 y~eAi~~Y~kAL~l~p~~~~~e~----------------------------------------~~l~~~~~~nlA~~ylk  126 (559)
                      |++|+..|.+++...|.+.....                                        ......+++++|.+|..
T Consensus       105 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  184 (327)
T 3cv0_A          105 ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL  184 (327)
T ss_dssp             HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            99999999999988776542110                                        01124678899999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCcc
Q 008613          127 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG  206 (559)
Q Consensus       127 lg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~  206 (559)
                      .|++++|+..+.++++++|+++.+++.+|.+|...|++++|+..|++++.++|++..++..++.+...+++.+.+...++
T Consensus       185 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  264 (327)
T 3cv0_A          185 SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV  264 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999888877666555555


Q ss_pred             chh
Q 008613          207 LLI  209 (559)
Q Consensus       207 ~~i  209 (559)
                      +.+
T Consensus       265 ~a~  267 (327)
T 3cv0_A          265 RAI  267 (327)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.33  E-value=1.6e-11  Score=115.72  Aligned_cols=103  Identities=17%  Similarity=0.148  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV--  148 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~--  148 (559)
                      +..+..+|.+++..|+|++|+..|.+++.++|.++.         +|+++|.||..+|+|++|+.+|++++++.|++.  
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~  107 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV---------AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI  107 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEE
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH---------HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHH
Confidence            568899999999999999999999999999888754         899999999999999999999999999888766  


Q ss_pred             --------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613          149 --------------KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  182 (559)
Q Consensus       149 --------------kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~  182 (559)
                                    .+++++|.+|..+|++++|+.+|++++.++|++.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A          108 DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             ECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             HHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence                          9999999999999999999999999999999763

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.33  E-value=1.4e-11  Score=123.59  Aligned_cols=202  Identities=10%  Similarity=0.063  Sum_probs=143.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhCCChHHHHHHHHH-HHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCC
Q 008613            8 MRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR   86 (559)
Q Consensus         8 l~~A~e~mk~m~pedl~~a~e~l~~~~pee~~~~~~~-~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~   86 (559)
                      +..+...++....++....++.+-...|+........ .......++..+...++..+...+.....+...|.+++..|+
T Consensus         7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   86 (359)
T 3ieg_A            7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGK   86 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCC
Confidence            3444455555555555554444433344332221111 001111233445556666666566667889999999999999


Q ss_pred             HHHHHHHHHHHHHhcC---CCCCch---hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008613           87 FSNALQKYLLAKKNLQ---GIHSSE---GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD  160 (559)
Q Consensus        87 y~eAi~~Y~kAL~l~p---~~~~~e---~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~  160 (559)
                      |++|+..|.+++.+.|   .++...   ..-.....+..+|.+|...|+|++|+..++++++++|+++.+++.+|.+|..
T Consensus        87 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (359)
T 3ieg_A           87 LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIK  166 (359)
T ss_dssp             HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            9999999999999877   443200   0000112234458999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          161 IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       161 lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      +|++++|+..|++++.++|++..++..++.+....++...+...+++.+
T Consensus       167 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  215 (359)
T 3ieg_A          167 EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL  215 (359)
T ss_dssp             TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888877665544444444

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.33  E-value=5.4e-13  Score=112.23  Aligned_cols=93  Identities=22%  Similarity=0.289  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---  147 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---  147 (559)
                      +..+..+|.+++..|+|++|+..|.+++.+.|.++.         +|+++|.||..+|+|++|+.+|+++++++|++   
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   74 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPV---------GYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV   74 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHH
Confidence            456666777777777777777777777777666543         67777777777777777777777777777776   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613          148 ---VKALYRRGQAYKDIGRLEEAVSDLS  172 (559)
Q Consensus       148 ---~kal~~rG~A~~~lg~~eeAi~dle  172 (559)
                         ..+++++|.++..+|++++|+..++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           75 AIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence               6777777777777776666665554

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.33  E-value=2.7e-11  Score=109.55  Aligned_cols=122  Identities=13%  Similarity=0.125  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH
Q 008613           53 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  132 (559)
Q Consensus        53 ~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e  132 (559)
                      +..+...++..+...+.....+...|..++..|+|++|+..|.+++.+.|.++.         +++++|.+|...|++++
T Consensus        58 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~  128 (186)
T 3as5_A           58 VDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFN---------VRFRLGVALDNLGRFDE  128 (186)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHH---------HHHHHHHHHHHcCcHHH
Confidence            444555555555555556788999999999999999999999999999887644         89999999999999999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008613          133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  183 (559)
Q Consensus       133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~  183 (559)
                      |+..+.++++++|+++.+++.+|.++...|++++|+..|++++.++|++..
T Consensus       129 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  179 (186)
T 3as5_A          129 AIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV  179 (186)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred             HHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence            999999999999999999999999999999999999999999999987643

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.32  E-value=4.6e-11  Score=101.86  Aligned_cols=102  Identities=27%  Similarity=0.406  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      ...+...|.+++..|++++|+..|.+++.+.|..+.         ++++++.+|...|++++|+..+.++++++|.+..+
T Consensus        35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  105 (136)
T 2fo7_A           35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA  105 (136)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence            667888999999999999999999999999877643         88999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  181 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~  181 (559)
                      ++.+|.+|...|++++|+..|++++.++|++
T Consensus       106 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          106 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            9999999999999999999999999999863

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.30  E-value=9.7e-13  Score=119.57  Aligned_cols=110  Identities=7%  Similarity=-0.036  Sum_probs=99.3

Q ss_pred             HHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008613           91 LQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD  170 (559)
Q Consensus        91 i~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~d  170 (559)
                      -..|.+++.+.|.+..         +++++|.+++..|+|++|+..|++++.++|+++.+|+.+|.+|..+|+|++|+.+
T Consensus         7 ~~~~~~al~~~p~~~~---------~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~   77 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLE---------QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHS   77 (148)
T ss_dssp             CCSHHHHTTCCHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhhHHHHHcCCHhhHH---------HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHH
Confidence            3458888888776543         8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          171 LSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       171 lekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      |++++.++|+++.++..++.+...+++...+...+++++
T Consensus        78 ~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  116 (148)
T 2vgx_A           78 YSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQ  116 (148)
T ss_dssp             HHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999999999999988877666666655

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.29  E-value=1.5e-10  Score=117.06  Aligned_cols=118  Identities=12%  Similarity=0.025  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHcC
Q 008613           69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY----LKTKQYDECIKVGSEVLAYD  144 (559)
Q Consensus        69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~y----lklg~y~eAi~~~~~AL~ld  144 (559)
                      .....+..+|.++.+.|++++|+..|.+++++.|.+           .+.+++.++    ...|+|++|+..|+++++.+
T Consensus       128 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-----------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~  196 (291)
T 3mkr_A          128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA-----------TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC  196 (291)
T ss_dssp             CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc-----------HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC
Confidence            346778889999999999999999999999997765           333444333    33489999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          145 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       145 P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                      |+++.+|+.+|.+|..+|++++|+..|++++.++|+++.++..++.+...+++
T Consensus       197 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~  249 (291)
T 3mkr_A          197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK  249 (291)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999988777654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.29  E-value=1.3e-10  Score=112.87  Aligned_cols=86  Identities=12%  Similarity=0.024  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHH
Q 008613           54 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC  133 (559)
Q Consensus        54 ~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eA  133 (559)
                      ..+...++..+...+..+..+..+|.+++..|+|++|+.+|.+++.+.|.++.         +++++|.||...|+|++|
T Consensus        60 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~la~~~~~~g~~~~A  130 (275)
T 1xnf_A           60 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY---------AHLNRGIALYYGGRDKLA  130 (275)
T ss_dssp             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH---------HHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccH---------HHHHHHHHHHHhccHHHH
Confidence            34444444444444445788899999999999999999999999999888765         899999999999999999


Q ss_pred             HHHHHHHHHcCCCCH
Q 008613          134 IKVGSEVLAYDAKNV  148 (559)
Q Consensus       134 i~~~~~AL~ldP~~~  148 (559)
                      +..|.++++++|++.
T Consensus       131 ~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A          131 QDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHhCCCCh
Confidence            999999999988875

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.28  E-value=9.2e-11  Score=118.55  Aligned_cols=100  Identities=12%  Similarity=0.092  Sum_probs=91.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008613           79 NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY  158 (559)
Q Consensus        79 n~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~  158 (559)
                      +.+...|+|++|+..|.++++..|.++.         +|+++|.||.++|+|++|+..++++++++|+++.+++++|.++
T Consensus       174 ~l~~~~~~~~eA~~~~~~~l~~~p~~~~---------~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~  244 (291)
T 3mkr_A          174 SLAAGGEKLQDAYYIFQEMADKCSPTLL---------LLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLS  244 (291)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHSCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhCchHHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4445569999999999999999888754         9999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHH-HHHHHHHHHHhCCCCHHHHHH
Q 008613          159 KDIGRLEE-AVSDLSNAHEVSPDDGTIADV  187 (559)
Q Consensus       159 ~~lg~~ee-Ai~dlekAl~l~P~~~~a~~~  187 (559)
                      ..+|++++ +...++++++++|+++.+...
T Consensus       245 ~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~  274 (291)
T 3mkr_A          245 QHLGKPPEVTNRYLSQLKDAHRSHPFIKEY  274 (291)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            99999987 568889999999999987653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.27  E-value=7.1e-11  Score=123.58  Aligned_cols=131  Identities=13%  Similarity=0.011  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV-  148 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~-  148 (559)
                      .+..+..+|.+++..|+|++|+..|.+++++.|.++.         +++++|.+|.++|++++|+..|+++++++|++. 
T Consensus        59 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  129 (450)
T 2y4t_A           59 NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA---------ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENE  129 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh
Confidence            3777777888888888888888888888887776643         777788888888888888888888888887776 


Q ss_pred             --HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          149 --KALYRR------------GQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       149 --kal~~r------------G~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                        .++..+            |.++...|++++|+..|++++.++|++..++..++.+....++...+...+.+.+
T Consensus       130 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  204 (450)
T 2y4t_A          130 EKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS  204 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence              554443            6667778888888888888888888877777777777777766655444444433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.26  E-value=2.1e-11  Score=104.44  Aligned_cols=101  Identities=12%  Similarity=0.079  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008613           88 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEA  167 (559)
Q Consensus        88 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeA  167 (559)
                      .+|+..|.+++...|.++.         +|+++|.+|...|+|++|+..|.++++++|+++.+|+.+|.+|..+|++++|
T Consensus         2 ~~a~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A   72 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNML---------LRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA   72 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            3689999999999988754         9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCC--CHHHHHHHHHHHHHHHh
Q 008613          168 VSDLSNAHEVSPD--DGTIADVLRDAKEILMK  197 (559)
Q Consensus       168 i~dlekAl~l~P~--~~~a~~~L~~a~~~l~~  197 (559)
                      +..|++++.++|+  +......+..+...+++
T Consensus        73 ~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           73 RQAWESGLAAAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence            9999999999884  45556666666555543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.25  E-value=3.9e-12  Score=117.08  Aligned_cols=123  Identities=10%  Similarity=-0.001  Sum_probs=105.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008613           78 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA  157 (559)
Q Consensus        78 Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A  157 (559)
                      +..++..|+|++|+..|.+++...|.++.         +|+++|.+|...|+|++|+..|.++++++|+++.+++.+|.+
T Consensus        17 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   87 (177)
T 2e2e_A           17 LHQFASQQNPEAQLQALQDKIRANPQNSE---------QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATV   87 (177)
T ss_dssp             TCCCC-----CCCCHHHHHHHHHCCSCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             hhhhhhccCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            44567789999999999999999988754         899999999999999999999999999999999999999999


Q ss_pred             -HHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          158 -YKDIGRL--EEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       158 -~~~lg~~--eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                       |...|++  ++|+..|++++.++|++..++..++.+....++...+...+.+++
T Consensus        88 l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  142 (177)
T 2e2e_A           88 LYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM  142 (177)
T ss_dssp             HHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence             8899999  999999999999999999999999999888877665544444444

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.24  E-value=1.2e-10  Score=116.98  Aligned_cols=112  Identities=17%  Similarity=0.155  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613           70 AAKMLKKQGNELYSE-GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  148 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~-g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~  148 (559)
                      .+..+...|.+|... |+|++|+.+|.+|+++.|....   ......++.++|.+|.++|+|++|+..|++++++.|++.
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  192 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS---VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence            467889999999997 9999999999999999886543   223356899999999999999999999999999998864


Q ss_pred             H-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008613          149 K-------ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI  184 (559)
Q Consensus       149 k-------al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a  184 (559)
                      .       +|+++|.+|..+|++++|+.+|++++.++|++...
T Consensus       193 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          193 LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            3       68999999999999999999999999999987654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.24  E-value=6.7e-11  Score=126.52  Aligned_cols=146  Identities=8%  Similarity=-0.013  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHH
Q 008613           54 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC  133 (559)
Q Consensus        54 ~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eA  133 (559)
                      ..+...++..+...+. ...+..+|.+++..|+|++|+..|.+++.+.|.++.         +|+++|.+|...|+|++|
T Consensus       260 ~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~A  329 (537)
T 3fp2_A          260 LDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP---------TYYHRGQMYFILQDYKNA  329 (537)
T ss_dssp             HHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH---------HHHHHHHHHHhcCCHHHH
Confidence            3444555555555555 778889999999999999999999999999888754         899999999999999999


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          134 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       134 i~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      +..|+++++++|+++.+++.+|.+|...|++++|+..|++++.++|++..++..++.+....++...+...+++++
T Consensus       330 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  405 (537)
T 3fp2_A          330 KEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK  405 (537)
T ss_dssp             HHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999888877766555555554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.24  E-value=3.1e-11  Score=116.80  Aligned_cols=141  Identities=16%  Similarity=0.072  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 008613           68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY----  143 (559)
Q Consensus        68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l----  143 (559)
                      +..+..+..+|.+++..|+|++|+.+|.+++.+...... ........+++++|.||...|+|++|+..|.+++++    
T Consensus        40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  118 (283)
T 3edt_B           40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV  118 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            556889999999999999999999999999998522100 001235679999999999999999999999999998    


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          144 ----DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV--------SPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       144 ----dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l--------~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                          +|....+++.+|.+|..+|++++|+..|++++.+        +|....++..++.+....++...+...++.++
T Consensus       119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  196 (283)
T 3edt_B          119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL  196 (283)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                5778899999999999999999999999999999        66667788889999888887776655555555

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.23  E-value=1e-10  Score=128.37  Aligned_cols=120  Identities=7%  Similarity=-0.045  Sum_probs=107.0

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613           55 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  134 (559)
Q Consensus        55 aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi  134 (559)
                      .+...++..++..+..+..+..+|.+|+..|+|++|+.+|.+++++.|.++.         +|+++|.||.++|+|++|+
T Consensus        41 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~g~~~~A~  111 (568)
T 2vsy_A           41 AGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPG---------IALWLGHALEDAGQAEAAA  111 (568)
T ss_dssp             HHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHcCCHHHHH
Confidence            3444444444444455889999999999999999999999999999988754         8999999999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHH
Q 008613          135 KVGSEVLAYDAKNVKALYRRGQAYKDI---GRLEEAVSDLSNAHEVSPDDGT  183 (559)
Q Consensus       135 ~~~~~AL~ldP~~~kal~~rG~A~~~l---g~~eeAi~dlekAl~l~P~~~~  183 (559)
                      ..|+++++++|++..+++.+|.+|..+   |++++|+..|+++++++|++..
T Consensus       112 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  163 (568)
T 2vsy_A          112 AAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE  163 (568)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccC
Confidence            999999999999999999999999999   9999999999999999998643

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.23  E-value=2.2e-10  Score=124.62  Aligned_cols=172  Identities=9%  Similarity=-0.023  Sum_probs=138.4

Q ss_pred             HhhCCChHHHHHHHHHHHccCcHHH----------------HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 008613           29 QLTHTPPEEVAEIGEKLANASPEEI----------------ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQ   92 (559)
Q Consensus        29 ~l~~~~pee~~~~~~~~~~~~pee~----------------~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~   92 (559)
                      ..+..+.++......++....|++.                ..+...++......+..+..+..+|..|++.|++++|+.
T Consensus       315 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  394 (597)
T 2xpi_A          315 LFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARR  394 (597)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHH
Confidence            3456677777777766665554321                122222222223334457788899999999999999999


Q ss_pred             HHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613           93 KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLS  172 (559)
Q Consensus        93 ~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dle  172 (559)
                      .|.+++++.|.+..         +|++++.+|.+.|++++|+..|+++++++|++..+|+.+|.+|...|++++|+..|+
T Consensus       395 ~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  465 (597)
T 2xpi_A          395 YFSKSSTMDPQFGP---------AWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ  465 (597)
T ss_dssp             HHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999887754         899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          173 NAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       173 kAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      +++.++|+++.++..+..+....++.+++...+++.+
T Consensus       466 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  502 (597)
T 2xpi_A          466 SSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNAL  502 (597)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            9999999999999999999888877666554444443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.22  E-value=9e-11  Score=98.42  Aligned_cols=94  Identities=10%  Similarity=0.056  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 008613          114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADV  187 (559)
Q Consensus       114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~------~~a~~~  187 (559)
                      ...|+++|.+|+..|+|++|+..|+++++++|+++.+++++|.+|..+|+|++|+.+|++++.++|++      ..++..
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999998      888888


Q ss_pred             HHHHHHHHHhhcCCCCCccc
Q 008613          188 LRDAKEILMKEDGHHGPRGL  207 (559)
Q Consensus       188 L~~a~~~l~~~~~~~~~~~~  207 (559)
                      ++.+...++....+...+++
T Consensus        84 ~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHhHhhhHhHHHH
Confidence            99998888866665554443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.22  E-value=1.4e-10  Score=126.18  Aligned_cols=132  Identities=11%  Similarity=-0.035  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----
Q 008613           69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-----  143 (559)
Q Consensus        69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l-----  143 (559)
                      .....+..+|..|.+.|++++|+..|.+++++.|.++.         +|++++.+|.+.|++++|+..|++++++     
T Consensus       439 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  509 (597)
T 2xpi_A          439 GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL---------LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ  509 (597)
T ss_dssp             TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc
Confidence            34556677777777777777777777777777766543         6777777777777777777777777777     


Q ss_pred             -CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          144 -DAKN-VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       144 -dP~~-~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                       +|++ ..+|+.+|.+|...|++++|+..|+++++++|++..++..++.+....++.+++...+++.+
T Consensus       510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  577 (597)
T 2xpi_A          510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL  577 (597)
T ss_dssp             CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence             5554 67777777777777777777777777777777777777777777777666555444444443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.21  E-value=6.1e-12  Score=112.50  Aligned_cols=109  Identities=10%  Similarity=0.025  Sum_probs=94.5

Q ss_pred             HHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613           92 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL  171 (559)
Q Consensus        92 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dl  171 (559)
                      ..|.+++.+.|.+.         ..++++|.+++..|+|++|+..|++++.++|+++.+|+.+|.+|..+|+|++|+.+|
T Consensus         5 ~~l~~al~~~p~~~---------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   75 (142)
T 2xcb_A            5 GTLAMLRGLSEDTL---------EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSY   75 (142)
T ss_dssp             ----CCTTCCHHHH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhHHHHHcCCHHHH---------HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            35666666655543         489999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          172 SNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       172 ekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      ++++.++|+++.++..++.+...+++...+...+++++
T Consensus        76 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (142)
T 2xcb_A           76 SYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR  113 (142)
T ss_dssp             HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999988777666666555

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.21  E-value=2.7e-10  Score=102.05  Aligned_cols=100  Identities=9%  Similarity=0.026  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613           69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  148 (559)
Q Consensus        69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~  148 (559)
                      ..+..+...|.+++..|+|++|+..|.+++.+.|.++.         +|+++|.||..+|+|++|+..|.++++++|++.
T Consensus        45 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~  115 (166)
T 1a17_A           45 SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK---------GYYRRAASNMALGKFRAALRDYETVVKVKPHDK  115 (166)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence            33788999999999999999999999999999888754         899999999999999999999999999999999


Q ss_pred             HHHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 008613          149 KALYRR--GQAYKDIGRLEEAVSDLSNAHEV  177 (559)
Q Consensus       149 kal~~r--G~A~~~lg~~eeAi~dlekAl~l  177 (559)
                      .++..+  +..+...|++++|+..++++..+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          116 DAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            888554  44488899999999999887654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.20  E-value=7.6e-11  Score=107.48  Aligned_cols=85  Identities=21%  Similarity=0.167  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613          113 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  192 (559)
Q Consensus       113 ~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~  192 (559)
                      ....|+++|.+|+..|+|++|+..|+++++++|+++.+|+++|.+|..+|+|++|+.+|++++.++|++..++..++.+.
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            46689999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHh
Q 008613          193 EILMK  197 (559)
Q Consensus       193 ~~l~~  197 (559)
                      ..+++
T Consensus        90 ~~~g~   94 (164)
T 3sz7_A           90 FDMAD   94 (164)
T ss_dssp             HHTTC
T ss_pred             HHccC
Confidence            77643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.20  E-value=1.4e-10  Score=122.50  Aligned_cols=131  Identities=17%  Similarity=0.026  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-----  144 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld-----  144 (559)
                      .+..+..+|.+++..|+|++|+++|.+|+++.+.........-...+|.|+|.+|..+|+|++|+.+|++++++.     
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            366788899999999999999999999999865433222223346689999999999999999999999999873     


Q ss_pred             ---CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613          145 ---AKNVKALYRRGQAYKDIG--RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  200 (559)
Q Consensus       145 ---P~~~kal~~rG~A~~~lg--~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~  200 (559)
                         +..+.++..+|.++..++  +|++|+.+|+++++++|+++.++..++.+...+.....
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~  190 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP  190 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCC
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchH
Confidence               456889999999988765  69999999999999999999999999988877766544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.19  E-value=1.9e-10  Score=111.13  Aligned_cols=109  Identities=12%  Similarity=-0.012  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 008613           68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY----  143 (559)
Q Consensus        68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l----  143 (559)
                      +..+..+..+|.+++..|+|++|+.+|.+++.+...... ........+++++|.+|..+|+|++|+..|++++++    
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  160 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG-KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR  160 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            667889999999999999999999999999998522100 001235669999999999999999999999999999    


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613          144 ----DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  177 (559)
Q Consensus       144 ----dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l  177 (559)
                          +|....+++.+|.+|...|++++|+..|++++.+
T Consensus       161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          161 LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                7888899999999999999999999999999987

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.19  E-value=1.2e-10  Score=117.88  Aligned_cols=136  Identities=10%  Similarity=-0.028  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613           68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  147 (559)
Q Consensus        68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~  147 (559)
                      ...+..+.+.|.+|...|+|++|+.+|.+++.+.+....   ......+|.++|.+|.. |+|++|+.+|++++++.|..
T Consensus        73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~  148 (307)
T 2ifu_A           73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT---PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE  148 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC
Confidence            345788899999999999999999999999998765433   22345688999999998 99999999999999987754


Q ss_pred             ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHhhcCCCCCccc
Q 008613          148 ------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG------TIADVLRDAKEILMKEDGHHGPRGL  207 (559)
Q Consensus       148 ------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~------~a~~~L~~a~~~l~~~~~~~~~~~~  207 (559)
                            ..+++++|.+|..+|+|++|+..|++++.+.|++.      .++..++.+...+++...+...+++
T Consensus       149 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~  220 (307)
T 2ifu_A          149 ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE  220 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                  67899999999999999999999999999876442      2444445555554544444333333

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.18  E-value=3.9e-11  Score=105.90  Aligned_cols=95  Identities=12%  Similarity=0.019  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HH
Q 008613          113 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT-------IA  185 (559)
Q Consensus       113 ~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~-------a~  185 (559)
                      .+.++.++|.+|++.|+|++|+.+|+++|+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..       ++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999987643       45


Q ss_pred             HHHHHHHHHHHhhcCCCCCccc
Q 008613          186 DVLRDAKEILMKEDGHHGPRGL  207 (559)
Q Consensus       186 ~~L~~a~~~l~~~~~~~~~~~~  207 (559)
                      ..++.+...+++...+...+++
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~k  108 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHR  108 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHH
Confidence            5555555555544444333333

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.18  E-value=7.1e-11  Score=126.32  Aligned_cols=119  Identities=9%  Similarity=0.010  Sum_probs=107.6

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613           55 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  134 (559)
Q Consensus        55 aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi  134 (559)
                      .+...+...+...+..+..+...|.+++..|+|++|+..|.+++.+.|.++.         +|+++|.+|...|+|++|+
T Consensus       294 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~la~~~~~~g~~~~A~  364 (537)
T 3fp2_A          294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY---------PYIQLACLLYKQGKFTESE  364 (537)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSH---------HHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHH
Confidence            3445555555555666888999999999999999999999999999998865         8999999999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613          135 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  182 (559)
Q Consensus       135 ~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~  182 (559)
                      ..|+++++++|+++.+++.+|.+|...|++++|+..|++++.++|++.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~  412 (537)
T 3fp2_A          365 AFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE  412 (537)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence            999999999999999999999999999999999999999999988654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.17  E-value=9e-11  Score=101.83  Aligned_cols=96  Identities=13%  Similarity=0.076  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613          114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  193 (559)
Q Consensus       114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~  193 (559)
                      +..|+++|.++++.|+|++|+..|+++++++|+++.+|+++|.+|..+|+|++|+.+|++++.++|++..++..++.+..
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCccchh
Q 008613          194 ILMKEDGHHGPRGLLI  209 (559)
Q Consensus       194 ~l~~~~~~~~~~~~~i  209 (559)
                      .+++..++...+++++
T Consensus        84 ~~~~~~~A~~~~~~al   99 (126)
T 3upv_A           84 AVKEYASALETLDAAR   99 (126)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHH
Confidence            9988777666666555

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.17  E-value=4.6e-11  Score=120.16  Aligned_cols=132  Identities=11%  Similarity=0.017  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613           69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  148 (559)
Q Consensus        69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~  148 (559)
                      .....+..+|..++..|++++|+..|++++.++|.++.         +++++|.+|...|++++|+..+++++.++|++.
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~  185 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGE---------IGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR  185 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHH---------HHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchh---------HHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH
Confidence            34778899999999999999999999999999999865         999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      ..++..+..+...+++++|+..|++++.++|++..++..++.+....++.+++...+..++
T Consensus       186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l  246 (287)
T 3qou_A          186 YQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHL  246 (287)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            8888889999999999999999999999999999999999999999888777666666555

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.17  E-value=1e-10  Score=123.85  Aligned_cols=117  Identities=12%  Similarity=0.105  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCC
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK---TKQYDECIKVGSEVLAYDAKN  147 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk---lg~y~eAi~~~~~AL~ldP~~  147 (559)
                      ...+...|.+++..|+|++|+..|.+++.+.|.++..   .....+|+++|.+|..   .|++++|+..|+++++++|++
T Consensus       372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  448 (514)
T 2gw1_A          372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI---YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS  448 (514)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC---SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH---HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc
Confidence            4445555555555555555555555555555444320   0011245555555555   555555555555555555555


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008613          148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  190 (559)
Q Consensus       148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~  190 (559)
                      +.+++.+|.+|...|++++|+..|++++.++|+++.++..+..
T Consensus       449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  491 (514)
T 2gw1_A          449 EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF  491 (514)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            5555555555555555555555555555555555555544433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.17  E-value=5.3e-11  Score=110.45  Aligned_cols=101  Identities=16%  Similarity=0.121  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 008613          114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-------NVK-----ALYRRGQAYKDIGRLEEAVSDLSNAHEV----  177 (559)
Q Consensus       114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~-------~~k-----al~~rG~A~~~lg~~eeAi~dlekAl~l----  177 (559)
                      +..+.++|.++++.|+|++|+..|+++|+++|+       +..     +|+++|.++..+|+|++|+.+|+++|++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            457889999999999999999999999999999       544     9999999999999999999999999999    


Q ss_pred             ---CCCCHHHH----HHHHHHHHHHHhhcCCCCCccchhhhhchh
Q 008613          178 ---SPDDGTIA----DVLRDAKEILMKEDGHHGPRGLLIEEITEE  215 (559)
Q Consensus       178 ---~P~~~~a~----~~L~~a~~~l~~~~~~~~~~~~~i~e~~e~  215 (559)
                         +|++..+|    .+++.+...+++.+++...+++++ ++.++
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl-el~p~  134 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV-EMIEE  134 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH-hcCCC
Confidence               99999999    999999999999999888888887 44443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.16  E-value=5.6e-10  Score=118.23  Aligned_cols=149  Identities=15%  Similarity=0.072  Sum_probs=121.6

Q ss_pred             hhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchh
Q 008613           30 LTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG  109 (559)
Q Consensus        30 l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~  109 (559)
                      ....+.++......++....|..                  ...+...|.+++..|+|++|+..|.+++.+.|.++.   
T Consensus       315 ~~~~~~~~A~~~~~~~~~~~~~~------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---  373 (514)
T 2gw1_A          315 FILQNYDQAGKDFDKAKELDPEN------------------IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE---  373 (514)
T ss_dssp             HHTTCTTHHHHHHHHHHHTCSSC------------------SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSH---
T ss_pred             HHhCCHHHHHHHHHHHHHhChhh------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHH---
Confidence            45667888888888888888877                  668888999999999999999999999999988765   


Q ss_pred             hhhHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH
Q 008613          110 RTLLLACSLNSMSCYLK-------TKQYDECIKVGSEVLAYDAK---NVKALYRRGQAYKD---IGRLEEAVSDLSNAHE  176 (559)
Q Consensus       110 ~~l~~~~~~nlA~~ylk-------lg~y~eAi~~~~~AL~ldP~---~~kal~~rG~A~~~---lg~~eeAi~dlekAl~  176 (559)
                            +++++|.+|..       ...|++++...    ..++.   ...+++.+|.+|..   .|++++|+..|++++.
T Consensus       374 ------~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~  443 (514)
T 2gw1_A          374 ------VPNFFAEILTDKNDFDKALKQYDLAIELE----NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK  443 (514)
T ss_dssp             ------HHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHCCCHHHHHHHHHHHHHhh----hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence                  66777776653       45566666543    33444   36699999999999   9999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          177 VSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       177 l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      ++|++..++..++.+....++...+...+++++
T Consensus       444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  476 (514)
T 2gw1_A          444 LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA  476 (514)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999999999999999888888776655555554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.15  E-value=1.4e-10  Score=102.09  Aligned_cols=130  Identities=15%  Similarity=0.140  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-
Q 008613           69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-  147 (559)
Q Consensus        69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~-  147 (559)
                      ..+..+..+|..++..|+|++|+.+|.+++.+.+....   ......+++++|.+|...|+|++|+..+.+++++.+.. 
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~   83 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK   83 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            34778889999999999999999999999998765433   34456689999999999999999999999999886553 


Q ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhhcCC
Q 008613          148 -----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKEDGH  201 (559)
Q Consensus       148 -----~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~------~~a~~~L~~a~~~l~~~~~~  201 (559)
                           ..+++++|.++...|++++|+..|++++.+.+..      ..++..++.+....++...+
T Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  148 (164)
T 3ro3_A           84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA  148 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence                 6789999999999999999999999999874321      34556666666666555443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.14  E-value=7.6e-10  Score=111.75  Aligned_cols=147  Identities=5%  Similarity=-0.158  Sum_probs=118.6

Q ss_pred             HHHHHHHHHhH-HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHH
Q 008613           55 TMRARIDAQMN-YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC  133 (559)
Q Consensus        55 aa~~~l~~~~~-~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eA  133 (559)
                      .+.+.+++.+. ..+.....|...|..+...|++++|+..|++++++.|.++.        .+|.+++.++.+.|++++|
T Consensus        82 ~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------~~~~~~~~~~~~~~~~~~A  153 (308)
T 2ond_A           82 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------LVYIQYMKFARRAEGIKSG  153 (308)
T ss_dssp             HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--------HHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--------HHHHHHHHHHHHhcCHHHH
Confidence            34455555555 35556788999999999999999999999999998877642        2789999999999999999


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          134 IKVGSEVLAYDAKNVKALYRRGQAYKD-IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       134 i~~~~~AL~ldP~~~kal~~rG~A~~~-lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      +..|+++++++|.+..+|...+..... .|++++|+..|+++++++|+++.++..+..+...+++..++..-+++++
T Consensus       154 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al  230 (308)
T 2ond_A          154 RMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL  230 (308)
T ss_dssp             HHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999999999998888766655433 7999999999999999999999999888888777666555444444444

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.14  E-value=2.7e-10  Score=117.51  Aligned_cols=98  Identities=13%  Similarity=-0.056  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k  149 (559)
                      .+..+.++|.+|++.|+|++|+.+|.++|+++|.++.         +|+++|.||..+|+|++|+.+|+++++++|++..
T Consensus       195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~  265 (336)
T 1p5q_A          195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK---------GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA  265 (336)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence            3788999999999999999999999999999988754         9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 008613          150 ALYRRGQAYKDIGRLEEA-VSDLSNAHE  176 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeA-i~dlekAl~  176 (559)
                      +++.++.++..++++++| ...|++.+.
T Consensus       266 a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          266 AKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999 556776664

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.14  E-value=1.7e-11  Score=113.54  Aligned_cols=129  Identities=16%  Similarity=0.118  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      .+.+..+|..++..|+|++|+..|++++.++|.++.         +++++|.+|...|++++|+..|+++++++| ++..
T Consensus         6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~   75 (176)
T 2r5s_A            6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD---------VKLAKADCLLETKQFELAQELLATIPLEYQ-DNSY   75 (176)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH---------HHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH---------HHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHH
Confidence            445778999999999999999999999999999865         999999999999999999999999999999 8877


Q ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          151 LYRRGQAYK-DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       151 l~~rG~A~~-~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      +..++.+.. ..++..+|+..|++++.++|++..++..++.+....++.+++...+++++
T Consensus        76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  135 (176)
T 2r5s_A           76 KSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNIL  135 (176)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            766665533 33344568999999999999999999999999998887776555555544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.13  E-value=3.4e-10  Score=117.20  Aligned_cols=141  Identities=16%  Similarity=0.129  Sum_probs=119.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      ....+..+...|.+++..|+|++|+.+|.+|+.+.+....  .......+++++|.||..+|+|++|+..|.+++++.+.
T Consensus       139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  216 (383)
T 3ulq_A          139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA--YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA  216 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST--THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            4457889999999999999999999999999999887754  13345679999999999999999999999999988654


Q ss_pred             C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          147 N------VKALYRRGQAYKDIGRLEEAVSDLSNAHE-----VS-PDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       147 ~------~kal~~rG~A~~~lg~~eeAi~dlekAl~-----l~-P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      .      ..+++++|.+|..+|++++|+..|++++.     .+ |....++..++.+...+++...+...+++++
T Consensus       217 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  291 (383)
T 3ulq_A          217 EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM  291 (383)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3      36999999999999999999999999999     45 7778888999999888877766555555544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.13  E-value=1.1e-09  Score=107.76  Aligned_cols=109  Identities=13%  Similarity=0.037  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 008613           68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY----  143 (559)
Q Consensus        68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l----  143 (559)
                      ...+..+...|.+++..|+|++|+.+|.+++.+...... ........+++++|.+|...|+|++|+..+++++++    
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG-KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            666888999999999999999999999999998521100 001235668999999999999999999999999998    


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613          144 ----DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  177 (559)
Q Consensus       144 ----dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l  177 (559)
                          +|....+++.+|.+|..+|++++|+..|++++.+
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                7788899999999999999999999999999985

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.12  E-value=2.1e-10  Score=100.36  Aligned_cols=94  Identities=13%  Similarity=0.059  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                      .++++|.++++.|+|++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.+...+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCccchh
Q 008613          196 MKEDGHHGPRGLLI  209 (559)
Q Consensus       196 ~~~~~~~~~~~~~i  209 (559)
                      ++..++...+++++
T Consensus        99 g~~~~A~~~~~~al  112 (121)
T 1hxi_A           99 HNANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            88776655555554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.11  E-value=6.2e-10  Score=89.91  Aligned_cols=77  Identities=31%  Similarity=0.459  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613          116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  192 (559)
Q Consensus       116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~  192 (559)
                      +++++|.+|...++|++|+..|.++++++|+++.+++.+|.+|...|++++|+..|++++.++|++..++..++.+.
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            44445555555555555555555555555555555555555555555555555555555555555554444444443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.10  E-value=6.5e-10  Score=111.33  Aligned_cols=136  Identities=13%  Similarity=0.002  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-------  143 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l-------  143 (559)
                      ...+...|..++..++|++|+.+|.+++.+.+...+   ......++.++|.+|..+|+|++|+.+|.+++++       
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~---~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~  191 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID---VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN  191 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC---TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc
Confidence            445567899999999999999999999997665443   1234568999999999999999999999999953       


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhh-cCCCCCccchh
Q 008613          144 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKE-DGHHGPRGLLI  209 (559)
Q Consensus       144 dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~------~~a~~~L~~a~~~l~~~-~~~~~~~~~~i  209 (559)
                      .+....+|+++|.+|..+|+|++|+..+++++.+.+..      ..++..++.+...+++. +.+...+++++
T Consensus       192 ~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            23345799999999999999999999999999987543      67888899998888743 55444444444

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.09  E-value=5.7e-09  Score=107.90  Aligned_cols=110  Identities=14%  Similarity=0.118  Sum_probs=99.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA----  142 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~----  142 (559)
                      ....+..+..+|.++...|+|++|+.+|.+++.+.+...+   ......+++++|.||..+|+|++|+.++.++++    
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  256 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE  256 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence            5556788999999999999999999999999999876643   455677999999999999999999999999999    


Q ss_pred             -cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613          143 -YD-AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  179 (559)
Q Consensus       143 -ld-P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P  179 (559)
                       .+ |..+.+++++|.+|..+|++++|+..|++++.+.+
T Consensus       257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence             46 88899999999999999999999999999999854

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.09  E-value=1.3e-09  Score=88.08  Aligned_cols=82  Identities=24%  Similarity=0.199  Sum_probs=57.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008613           79 NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY  158 (559)
Q Consensus        79 n~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~  158 (559)
                      ..++..+..-.....|.+|+.......  ........+++++|.||...|+|++|+..|+++++++|+++.+++.+|.++
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKAL--ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            344444443334444666665533211  111224568889999999999999999999999999999999999999998


Q ss_pred             HHcC
Q 008613          159 KDIG  162 (559)
Q Consensus       159 ~~lg  162 (559)
                      ..+|
T Consensus        88 ~~~g   91 (91)
T 1na3_A           88 QKQG   91 (91)
T ss_dssp             HHHC
T ss_pred             HhcC
Confidence            7764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.09  E-value=1.4e-09  Score=92.51  Aligned_cols=86  Identities=12%  Similarity=-0.046  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k  149 (559)
                      .+..+...|.+++..|+|++|+..|.+++.+.|.++.         +++++|.+|...|++++|+..+.++++++|++..
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  115 (131)
T 2vyi_A           45 NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK---------AYGRMGLALSSLNKHVEAVAYYKKALELDPDNET  115 (131)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHH---------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchH
Confidence            3778899999999999999999999999999888754         8999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCH
Q 008613          150 ALYRRGQAYKDIGRL  164 (559)
Q Consensus       150 al~~rG~A~~~lg~~  164 (559)
                      +++.++.++..+|++
T Consensus       116 ~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A          116 YKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999999875

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.09  E-value=3.7e-10  Score=111.17  Aligned_cols=142  Identities=15%  Similarity=0.070  Sum_probs=117.7

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD--  144 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld--  144 (559)
                      ....+..+..+|.+++..|+|++|+.+|.+++.+...... ........+++++|.+|...|+|++|+..|.+++++.  
T Consensus        65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  143 (311)
T 3nf1_A           65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  143 (311)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            4556888999999999999999999999999998522100 0012356799999999999999999999999999884  


Q ss_pred             ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          145 ------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV--------SPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       145 ------P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l--------~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                            |....+++.+|.+|...|++++|+..|++++.+        +|....++..++.+....++..++...+++++
T Consensus       144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  222 (311)
T 3nf1_A          144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL  222 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                  667889999999999999999999999999998        66667788888888888887776655555555

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.08  E-value=7.1e-10  Score=102.83  Aligned_cols=131  Identities=13%  Similarity=-0.018  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC-
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY---DA-  145 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l---dP-  145 (559)
                      .+..+...|.+++..|+|++|+.+|.+++.+......   ......+++++|.+|...|+|++|+..+.+++++   .+ 
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  101 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE  101 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc
Confidence            3677888899999999999999999999987665433   3445668889999999999999999999998887   33 


Q ss_pred             ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HHHHHHHHHHHHHHhhcCCCC
Q 008613          146 ---KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP--DDG----TIADVLRDAKEILMKEDGHHG  203 (559)
Q Consensus       146 ---~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P--~~~----~a~~~L~~a~~~l~~~~~~~~  203 (559)
                         ....+++++|.+|..+|++++|+..|++++.+.+  .+.    .++..++.+....++...+..
T Consensus       102 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  168 (203)
T 3gw4_A          102 DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQ  168 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence               2356788899999999999999999999887643  222    234566666666655544333

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.07  E-value=8.8e-10  Score=112.77  Aligned_cols=140  Identities=14%  Similarity=0.104  Sum_probs=117.2

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      ....+..+...|.+++..|+|++|+.+|.+++.+.+....   ......+++++|.+|...|+|++|+..|.+++++.+.
T Consensus       183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  259 (406)
T 3sf4_A          183 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ  259 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            3445678899999999999999999999999999877654   3455679999999999999999999999999998877


Q ss_pred             C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          147 N------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       147 ~------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~------~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      .      ..+++.+|.+|...|++++|+..|++++.+.+..      ..++..++.+...+++...+...+++++
T Consensus       260 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  334 (406)
T 3sf4_A          260 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  334 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            6      7899999999999999999999999999986543      5577778888887777666555555444

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.06  E-value=1.6e-09  Score=92.96  Aligned_cols=107  Identities=11%  Similarity=0.030  Sum_probs=91.8

Q ss_pred             hhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchh
Q 008613           30 LTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG  109 (559)
Q Consensus        30 l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~  109 (559)
                      +...+.++......++....|..                  ...+..+|.+++..|+|++|+..|.+++.+.|.++.   
T Consensus        27 ~~~~~~~~A~~~~~~al~~~~~~------------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---   85 (133)
T 2lni_A           27 FQKGDYPQAMKHYTEAIKRNPKD------------------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK---   85 (133)
T ss_dssp             HHTTCSHHHHHHHHHHHTTCTTC------------------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH---
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCc------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH---
Confidence            34455555555555555555555                  788999999999999999999999999999888754   


Q ss_pred             hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008613          110 RTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR  163 (559)
Q Consensus       110 ~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~  163 (559)
                            +++++|.||..+|+|++|+..|.++++++|++..+++.++.++...|+
T Consensus        86 ------~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           86 ------GYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             ------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             ------HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence                  899999999999999999999999999999999999999999988764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.06  E-value=2.5e-09  Score=107.04  Aligned_cols=129  Identities=13%  Similarity=0.013  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCC
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL---AYDAK  146 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL---~ldP~  146 (559)
                      ....+...|..+...|+|++|+.+|.+++.+.+....   ......+|+++|.+|..+|+|++|+.+|.+++   +..|+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~  190 (293)
T 2qfc_A          114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID---VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD  190 (293)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC---TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc
Confidence            3455667899999999999999999999988665433   12245689999999999999999999999999   44665


Q ss_pred             CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHhhcCC
Q 008613          147 NV----KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD------DGTIADVLRDAKEILMKEDGH  201 (559)
Q Consensus       147 ~~----kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~------~~~a~~~L~~a~~~l~~~~~~  201 (559)
                      +.    .+++++|.+|..+|+|++|+..|++++.+.++      ...++..++.+...+++.+.+
T Consensus       191 ~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          191 NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            43    79999999999999999999999999998643      156778888888887765554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.06  E-value=2.6e-10  Score=94.51  Aligned_cols=67  Identities=19%  Similarity=0.412  Sum_probs=31.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008613          119 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVK-ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA  185 (559)
Q Consensus       119 nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k-al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~  185 (559)
                      ++|.+|+..|+|++|+..|+++++++|+++. +++.+|.+|..+|++++|+.+|++++.++|++..++
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            3444444444444444444444444444444 444444444444444444444444444444444433

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.05  E-value=2.2e-09  Score=108.41  Aligned_cols=139  Identities=6%  Similarity=-0.054  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHhHHhHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH-cCCHH
Q 008613           54 ATMRARIDAQMNYEFNAAK-MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-TKQYD  131 (559)
Q Consensus        54 ~aa~~~l~~~~~~~~~~a~-~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk-lg~y~  131 (559)
                      ..+...++..+...+..+. .|...|..+.+.|++++|+..|.+++++.|....         +|...+.+... .|+++
T Consensus       116 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~---------~~~~~a~~~~~~~~~~~  186 (308)
T 2ond_A          116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH---------VYVTAALMEYYCSKDKS  186 (308)
T ss_dssp             HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH---------HHHHHHHHHHHTSCCHH
T ss_pred             HHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHHcCCHH
Confidence            3444444444443433344 8999999999999999999999999999887643         56666655443 79999


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHHHhhcCC
Q 008613          132 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV---SPD-DGTIADVLRDAKEILMKEDGH  201 (559)
Q Consensus       132 eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l---~P~-~~~a~~~L~~a~~~l~~~~~~  201 (559)
                      +|+..|+++++++|+++.+|..++..+..+|++++|+..|++++..   .|+ ...++..+.......++...+
T Consensus       187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a  260 (308)
T 2ond_A          187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI  260 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999999999999999999999999996   554 678888888777776654443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.05  E-value=6.7e-09  Score=103.87  Aligned_cols=107  Identities=12%  Similarity=0.190  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--  147 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~--  147 (559)
                      .+..+...|.+|+..|+|++|+.+|.+++.+....+.  .......+|+|+|.+|.++|+|++|+.++.+++++.+..  
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~  231 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS  231 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc
Confidence            3567999999999999999999999999987654422  245567799999999999999999999999999987654  


Q ss_pred             ----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q 008613          148 ----VKALYRRGQAYKDIG-RLEEAVSDLSNAHEVS  178 (559)
Q Consensus       148 ----~kal~~rG~A~~~lg-~~eeAi~dlekAl~l~  178 (559)
                          +.+|+++|.+|..+| .+++|+..|++|+.+.
T Consensus       232 ~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence                889999999999999 5799999999999864

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.04  E-value=2.1e-09  Score=100.91  Aligned_cols=137  Identities=4%  Similarity=-0.134  Sum_probs=97.6

Q ss_pred             HhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch
Q 008613           29 QLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE  108 (559)
Q Consensus        29 ~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e  108 (559)
                      .+...+.++......++....|.........+..  ....-.+..+..+|.+++..|+|++|+.+|.+++.+.|.++.  
T Consensus        48 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--  123 (198)
T 2fbn_A           48 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD--KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVK--  123 (198)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhcccccchhhHHH--HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHH--
Confidence            3455666666666666665544331000000000  001112578899999999999999999999999999888754  


Q ss_pred             hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 008613          109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV-SDLSNAHE  176 (559)
Q Consensus       109 ~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi-~dlekAl~  176 (559)
                             +++++|.||..+|+|++|+.+|.++++++|++..++..++.++..+++++++. ..|.+.+.
T Consensus       124 -------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          124 -------ALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             -------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             -------HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                   89999999999999999999999999999999999999999999999988877 44444443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.04  E-value=7e-10  Score=114.71  Aligned_cols=125  Identities=16%  Similarity=0.116  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 008613           68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY----  143 (559)
Q Consensus        68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l----  143 (559)
                      ...+..+..+|..++..|+|++|+.+|.+++++.|.++     .....+|+++|.+|...|+|++|+..|++++++    
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  119 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL-----RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM  119 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh-----hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            45588888999999999999999999999999977763     234568999999999999999999999999998    


Q ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHh
Q 008613          144 --DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV------SPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       144 --dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l------~P~~~~a~~~L~~a~~~l~~  197 (559)
                        +|....+++.+|.+|..+|++++|+..|++++.+      .|....++..++.+...+++
T Consensus       120 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence              6778899999999999999999999999999998      44556688888888888877

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.04  E-value=1.4e-09  Score=120.51  Aligned_cols=124  Identities=7%  Similarity=-0.094  Sum_probs=113.9

Q ss_pred             hHHhHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC--CHH
Q 008613           64 MNYEFNAAKMLKKQGNELYSEGR----------FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK--QYD  131 (559)
Q Consensus        64 ~~~~~~~a~~lk~~Gn~~~k~g~----------y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg--~y~  131 (559)
                      +...++....|..++.++...++          |+++++.|.+++..+|.+..         +|++|+.++.+++  +|+
T Consensus        56 l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~---------aW~hR~w~l~~l~~~~~~  126 (567)
T 1dce_A           56 LGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---------TWHHRCWLLSRLPEPNWA  126 (567)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHTCSSCCHH
T ss_pred             HHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcccccHH
Confidence            33344448889999999998888          99999999999999999865         9999999999999  779


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613          132 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  196 (559)
Q Consensus       132 eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg-~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~  196 (559)
                      +++.+|+++++++|+|..+|+.|+.++..++ .+++++++++++++++|.+..+|...+.+...+.
T Consensus       127 ~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~  192 (567)
T 1dce_A          127 RELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH  192 (567)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999 9999999999999999999999999999988763

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.03  E-value=2e-10  Score=124.44  Aligned_cols=106  Identities=8%  Similarity=0.019  Sum_probs=92.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      .+..+..+..+|.+|++.|+|++|+..|++++++.|.++.         +|+++|.+|..+|+|++|+..|+++++++|+
T Consensus        36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---------~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~  106 (477)
T 1wao_1           36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK---------GYYRRAASNMALGKFRAALRDYETVVKVKPH  106 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3334899999999999999999999999999999888754         8999999999999999999999999999999


Q ss_pred             CHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCC
Q 008613          147 NVKALYRRGQA--YKDIGRLEEAVSDLS-----------NAHEVSPDD  181 (559)
Q Consensus       147 ~~kal~~rG~A--~~~lg~~eeAi~dle-----------kAl~l~P~~  181 (559)
                      +..+++.++.+  +...|++++|+..++           +++.++|++
T Consensus       107 ~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          107 DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            99999999999  889999999999999           888887764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.03  E-value=1.5e-09  Score=98.52  Aligned_cols=89  Identities=7%  Similarity=-0.053  Sum_probs=78.1

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      .+..+..+.++|.++++.|+|++|+..|.++|.++|.++.         +|+++|.||..+|+|++|+.+|.++++++|+
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~---------a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  129 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEK---------ALFRRAKARIAAWKLDEAEEDLKLLLRNHPA  129 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchH---------HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence            4555788999999999999999999999999999988754         9999999999999999999999999999999


Q ss_pred             CH-HHHHHHHHHHHHcCCH
Q 008613          147 NV-KALYRRGQAYKDIGRL  164 (559)
Q Consensus       147 ~~-kal~~rG~A~~~lg~~  164 (559)
                      +. .+...++.+...++++
T Consensus       130 ~~~~~~~~l~~~~~~~~~~  148 (162)
T 3rkv_A          130 AASVVAREMKIVTERRAEK  148 (162)
T ss_dssp             GHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHH
Confidence            98 5566666666655444

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.02  E-value=1.5e-09  Score=112.50  Aligned_cols=141  Identities=13%  Similarity=0.001  Sum_probs=118.5

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA-  145 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP-  145 (559)
                      .+..+..+...|.+++..|+|.+|+.+|.+|+.+.+.....  ....+.+++++|.||..+|+|++|+..|.+++++.+ 
T Consensus       137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~  214 (378)
T 3q15_A          137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD  214 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            45578899999999999999999999999999998876432  224567999999999999999999999999998743 


Q ss_pred             -----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          146 -----KNVKALYRRGQAYKDIGRLEEAVSDLSNAHE-----VSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       146 -----~~~kal~~rG~A~~~lg~~eeAi~dlekAl~-----l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                           ....+++++|.+|..+|++++|+..|++++.     .+|....+...++.+...+++.+.+...+++++
T Consensus       215 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  288 (378)
T 3q15_A          215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL  288 (378)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                 2357899999999999999999999999999     677778888899999888877666544444444

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.02  E-value=3.9e-09  Score=109.27  Aligned_cols=111  Identities=11%  Similarity=0.056  Sum_probs=99.9

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA----  142 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~----  142 (559)
                      ....+..+...|.++...|+|++|+++|.+++.+.+....   ......+++++|.||..+|+|++|+.++.++++    
T Consensus       178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~  254 (378)
T 3q15_A          178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE  254 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence            3456888999999999999999999999999998765543   345677999999999999999999999999999    


Q ss_pred             -cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008613          143 -YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  180 (559)
Q Consensus       143 -ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~  180 (559)
                       .+|..+.+++.+|.+|..+|++++|+..|++++.+.+.
T Consensus       255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence             78888999999999999999999999999999999654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.01  E-value=1.1e-09  Score=95.56  Aligned_cols=96  Identities=11%  Similarity=0.024  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613          114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  193 (559)
Q Consensus       114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~  193 (559)
                      ...|+++|.+|+..|+|++|+..|.+++.++|+++.+|+.+|.+|..+|+|++|+.+|++++.++|++..++..++.+..
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   88 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCccchh
Q 008613          194 ILMKEDGHHGPRGLLI  209 (559)
Q Consensus       194 ~l~~~~~~~~~~~~~i  209 (559)
                      .+++...+...+.+++
T Consensus        89 ~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           89 EMESYDEAIANLQRAY  104 (137)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHH
Confidence            9887776655555555

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.01  E-value=4e-09  Score=108.08  Aligned_cols=136  Identities=10%  Similarity=-0.131  Sum_probs=115.5

Q ss_pred             hHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCCCchhhhh
Q 008613           35 PEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG--RFSNALQKYLLAKKNLQGIHSSEGRTL  112 (559)
Q Consensus        35 pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g--~y~eAi~~Y~kAL~l~p~~~~~e~~~l  112 (559)
                      .++....+.++..+.|+.                  ...|..+|.++...+  +|.+++.++.++|..+|.+..      
T Consensus        49 s~~aL~~t~~~L~~nP~~------------------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~------  104 (306)
T 3dra_A           49 SERALHITELGINELASH------------------YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ------  104 (306)
T ss_dssp             SHHHHHHHHHHHHHCTTC------------------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH------
T ss_pred             CHHHHHHHHHHHHHCcHH------------------HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH------
Confidence            345666667777777777                  889999999999999  999999999999999999876      


Q ss_pred             HHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHH
Q 008613          113 LLACSLNSMSCY----LKT---KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE--EAVSDLSNAHEVSPDDGT  183 (559)
Q Consensus       113 ~~~~~~nlA~~y----lkl---g~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~e--eAi~dlekAl~l~P~~~~  183 (559)
                         +|+.|+.++    ..+   +++++++..|+++++++|+|..+|+.|+.++..+++++  +++..++++++++|.|-.
T Consensus       105 ---aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s  181 (306)
T 3dra_A          105 ---IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS  181 (306)
T ss_dssp             ---HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH
T ss_pred             ---HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH
Confidence               888888888    666   78889999999999999999999999999998888888  888888888888888888


Q ss_pred             HHHHHHHHHHHHHh
Q 008613          184 IADVLRDAKEILMK  197 (559)
Q Consensus       184 a~~~L~~a~~~l~~  197 (559)
                      +|...+.+...+++
T Consensus       182 AW~~R~~ll~~l~~  195 (306)
T 3dra_A          182 AWSHRFFLLFSKKH  195 (306)
T ss_dssp             HHHHHHHHHHSSGG
T ss_pred             HHHHHHHHHHhccc
Confidence            88877777666543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.01  E-value=1.4e-09  Score=91.63  Aligned_cols=81  Identities=20%  Similarity=0.247  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 008613          115 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAK  192 (559)
Q Consensus       115 ~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~--~~~a~~~L~~a~  192 (559)
                      .+|+++|.+|+..|+|++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++.+.|.  +......+..+.
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l   87 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAK   87 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Confidence            489999999999999999999999999999999999999999999999999999999999999874  444555555554


Q ss_pred             HHH
Q 008613          193 EIL  195 (559)
Q Consensus       193 ~~l  195 (559)
                      ...
T Consensus        88 ~~~   90 (100)
T 3ma5_A           88 LKA   90 (100)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            444

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.01  E-value=6.5e-09  Score=91.25  Aligned_cols=108  Identities=19%  Similarity=0.237  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK---  146 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~---  146 (559)
                      .+..+...|.+++..|+|++|+.+|.+++.+.+....   ......+++++|.+|...|+|++|+..+.+++++.+.   
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  124 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD  124 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc
Confidence            4578889999999999999999999999998776543   3445678999999999999999999999999987432   


Q ss_pred             ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 008613          147 ---NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  180 (559)
Q Consensus       147 ---~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~  180 (559)
                         ...+++.+|.+|..+|++++|+..|++++.+...
T Consensus       125 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence               3678999999999999999999999999987543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.00  E-value=7.8e-10  Score=114.36  Aligned_cols=140  Identities=16%  Similarity=0.107  Sum_probs=112.2

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCC-----------------
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-----------------  129 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~-----------------  129 (559)
                      ....+..+..+|.+|+..|+|++|+.+|.+++.+.+....   ......+++++|.+|...|+                 
T Consensus       122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~  198 (411)
T 4a1s_A          122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD---RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA  198 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence            4667888999999999999999999999999998654332   34456799999999999999                 


Q ss_pred             HHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHHh
Q 008613          130 YDECIKVGSEVLAYD------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT------IADVLRDAKEILMK  197 (559)
Q Consensus       130 y~eAi~~~~~AL~ld------P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~------a~~~L~~a~~~l~~  197 (559)
                      |++|+..|.+++++.      +....+++.+|.+|...|++++|+..|++++.+.+....      ++..++.+....++
T Consensus       199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  278 (411)
T 4a1s_A          199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ  278 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence            999999999999874      344679999999999999999999999999998775322      66667777666665


Q ss_pred             hcCCCCCccchh
Q 008613          198 EDGHHGPRGLLI  209 (559)
Q Consensus       198 ~~~~~~~~~~~i  209 (559)
                      ...+...++..+
T Consensus       279 ~~~A~~~~~~al  290 (411)
T 4a1s_A          279 FEDAAEHYKRTL  290 (411)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            554444444333

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.00  E-value=5.2e-10  Score=115.53  Aligned_cols=143  Identities=7%  Similarity=-0.031  Sum_probs=75.6

Q ss_pred             hhCCChHHHHHHHHHHHccCcHHHHH-HHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch
Q 008613           30 LTHTPPEEVAEIGEKLANASPEEIAT-MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE  108 (559)
Q Consensus        30 l~~~~pee~~~~~~~~~~~~pee~~a-a~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e  108 (559)
                      +...+.++....+.++....|..... .........  ..-....+.++|.+|++.|+|++|+.+|.++|.++|.+..  
T Consensus       190 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~--~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~--  265 (338)
T 2if4_A          190 FKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMA--LAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPK--  265 (338)
T ss_dssp             CSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHH--HHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHH--
T ss_pred             HhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--
Confidence            34556677776677666666665210 000000000  0011347889999999999999999999999999888754  


Q ss_pred             hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHH
Q 008613          109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY-KDIGRLEEAVSDLSNAHEVSPDDGT  183 (559)
Q Consensus       109 ~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~-~~lg~~eeAi~dlekAl~l~P~~~~  183 (559)
                             +|+++|.||..+|+|++|+.+|.++++++|++..++..++.++ ...++++++...|++++.+.|+++.
T Consensus       266 -------a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          266 -------ALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             -------HHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred             -------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence                   9999999999999999999999999999999999999999994 4567788899999999999998754

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.00  E-value=3.8e-10  Score=93.70  Aligned_cols=88  Identities=20%  Similarity=0.157  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 008613          116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAKE  193 (559)
Q Consensus       116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~--~~~a~~~L~~a~~  193 (559)
                      +++++|.+|...|+|++|+..|+++++++|++..+++.+|.+|..+|++++|+..|+++++++|+  +..++..++.+..
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~   87 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR   87 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999  9999999988887


Q ss_pred             HH-HhhcCCCC
Q 008613          194 IL-MKEDGHHG  203 (559)
Q Consensus       194 ~l-~~~~~~~~  203 (559)
                      .+ ++.+.+..
T Consensus        88 ~~~~~~~~A~~   98 (112)
T 2kck_A           88 YIEGKEVEAEI   98 (112)
T ss_dssp             TCSSCSHHHHH
T ss_pred             HHhCCHHHHHH
Confidence            77 65554333

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.00  E-value=2e-09  Score=106.11  Aligned_cols=139  Identities=14%  Similarity=0.098  Sum_probs=114.1

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      ....+..+...|.+++..|+|++|+.+|.+++.+.+....   ......+++++|.+|...|++++|+..+.+++++.+.
T Consensus       179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  255 (338)
T 3ro2_A          179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ  255 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence            3445678899999999999999999999999998776443   3445669999999999999999999999999998776


Q ss_pred             C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhhcCCCCCccch
Q 008613          147 N------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKEDGHHGPRGLL  208 (559)
Q Consensus       147 ~------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~------~~a~~~L~~a~~~l~~~~~~~~~~~~~  208 (559)
                      .      ..+++.+|.+|...|++++|+..|++++.+.+..      ..++..++.+....++.+.+...+++.
T Consensus       256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  329 (338)
T 3ro2_A          256 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  329 (338)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            6      7899999999999999999999999999986542      346667777777776665544444433

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.99  E-value=1.2e-09  Score=111.70  Aligned_cols=140  Identities=16%  Similarity=0.095  Sum_probs=115.1

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCC-----------------
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-----------------  129 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~-----------------  129 (559)
                      ....+..+...|.+++..|+|++|+.+|.+++.+.+....   ......+++++|.+|...|+                 
T Consensus        83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a  159 (406)
T 3sf4_A           83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND---KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV  159 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc---ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence            4556888999999999999999999999999999776543   34556799999999999999                 


Q ss_pred             ---HHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH
Q 008613          130 ---YDECIKVGSEVLAY------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT------IADVLRDAKEI  194 (559)
Q Consensus       130 ---y~eAi~~~~~AL~l------dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~------a~~~L~~a~~~  194 (559)
                         |++|+..|.+++++      .|....+++.+|.+|..+|++++|+..|++++.+.+....      ++..++.+...
T Consensus       160 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  239 (406)
T 3sf4_A          160 RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF  239 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence               99999999999987      4455789999999999999999999999999998765432      67777777777


Q ss_pred             HHhhcCCCCCccchh
Q 008613          195 LMKEDGHHGPRGLLI  209 (559)
Q Consensus       195 l~~~~~~~~~~~~~i  209 (559)
                      .++...+...+.+++
T Consensus       240 ~g~~~~A~~~~~~al  254 (406)
T 3sf4_A          240 LGEFETASEYYKKTL  254 (406)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHH
Confidence            766655444444443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.99  E-value=1.9e-09  Score=106.29  Aligned_cols=139  Identities=16%  Similarity=0.092  Sum_probs=112.9

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCC-----------------
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-----------------  129 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~-----------------  129 (559)
                      ....+..+...|.+++..|+|++|+..|.+++.+.+....   ......+++++|.+|...|+                 
T Consensus        79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a  155 (338)
T 3ro2_A           79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND---KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV  155 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence            4556888999999999999999999999999999876644   34456799999999999999                 


Q ss_pred             ---HHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHH
Q 008613          130 ---YDECIKVGSEVLAY------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG------TIADVLRDAKEI  194 (559)
Q Consensus       130 ---y~eAi~~~~~AL~l------dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~------~a~~~L~~a~~~  194 (559)
                         |++|+..+.+++.+      .+....+++.+|.+|...|++++|+..|++++.+.+...      .++..++.+...
T Consensus       156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  235 (338)
T 3ro2_A          156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF  235 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence               99999999999887      344567999999999999999999999999999865432      266777777777


Q ss_pred             HHhhcCCCCCccch
Q 008613          195 LMKEDGHHGPRGLL  208 (559)
Q Consensus       195 l~~~~~~~~~~~~~  208 (559)
                      .++...+...++..
T Consensus       236 ~g~~~~A~~~~~~a  249 (338)
T 3ro2_A          236 LGEFETASEYYKKT  249 (338)
T ss_dssp             HTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH
Confidence            76655544434433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.98  E-value=1.1e-09  Score=109.69  Aligned_cols=140  Identities=15%  Similarity=0.057  Sum_probs=109.0

Q ss_pred             HhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch
Q 008613           29 QLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE  108 (559)
Q Consensus        29 ~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e  108 (559)
                      .....+.++......++....|..                  +..+..+|.+|++.|+|++|+..|.+++++.|.+..  
T Consensus        14 ~~~~g~~~~A~~~~~~al~~~p~~------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--   73 (281)
T 2c2l_A           14 LFVGRKYPEAAACYGRAITRNPLV------------------AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK--   73 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSCC------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH--
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCcc------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH--
Confidence            344556666666666666666655                  888999999999999999999999999999888754  


Q ss_pred             hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-------HHHHHHHH----------------------HHH
Q 008613          109 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV-------KALYRRGQ----------------------AYK  159 (559)
Q Consensus       109 ~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~-------kal~~rG~----------------------A~~  159 (559)
                             +++++|.+|..+|+|++|+.+|.++++++|++.       ...++++.                      ..+
T Consensus        74 -------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l  146 (281)
T 2c2l_A           74 -------AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL  146 (281)
T ss_dssp             -------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence                   899999999999999999999999999998652       11111110                      112


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          160 DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       160 ~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                      ..|++++|+..|+++++++|++..+...+..+....
T Consensus       147 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  182 (281)
T 2c2l_A          147 IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKH  182 (281)
T ss_dssp             HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHH
Confidence            367899999999999999999887777766554443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.98  E-value=2.5e-09  Score=108.16  Aligned_cols=109  Identities=12%  Similarity=0.021  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-
Q 008613           69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-  147 (559)
Q Consensus        69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~-  147 (559)
                      ..+..+.+.|.+|.. |+|++|+.+|.+++.+.+....   ......++.++|.+|.++|+|++|+.+|++++++.|++ 
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  189 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER---LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME  189 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence            357888999999999 9999999999999999876533   23456799999999999999999999999999987654 


Q ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613          148 -----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  182 (559)
Q Consensus       148 -----~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~  182 (559)
                           ..+++.+|.+|..+|++++|+..|++++ ++|+..
T Consensus       190 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          190 NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence                 3588999999999999999999999999 999764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.97  E-value=1.6e-09  Score=116.53  Aligned_cols=92  Identities=10%  Similarity=-0.047  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k  149 (559)
                      .+..+.++|.+|++.|+|++|+..|.++|.++|.++.         +|+++|.||+.+++|++|+.+|+++++++|++..
T Consensus       316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~  386 (457)
T 1kt0_A          316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK---------GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA  386 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence            3788999999999999999999999999999988754         9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHH
Q 008613          150 ALYRRGQAYKDIGRLEEAVSD  170 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~d  170 (559)
                      +++.++.++..++++++|...
T Consensus       387 a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          387 ARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988754

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.97  E-value=2.7e-09  Score=107.95  Aligned_cols=112  Identities=14%  Similarity=0.058  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC-C
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD--AK-N  147 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld--P~-~  147 (559)
                      . .++..|..+++.++|++|+.+|++++...  ++     .+...+++++|.++..+|++++|+..|++++...  |. .
T Consensus       136 ~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~-----~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~  207 (282)
T 4f3v_A          136 L-VAWMKAVVYGAAERWTDVIDQVKSAGKWP--DK-----FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACA  207 (282)
T ss_dssp             H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTH
T ss_pred             H-HHHHHHHHHHHcCCHHHHHHHHHHhhccC--Cc-----ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcccc
Confidence            6 78889999999999999999999776532  11     1224589999999999999999999999999654  65 6


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613          148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  191 (559)
Q Consensus       148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a  191 (559)
                      +.+++++|.++..+|+.++|+..|++++.++|+ ..++..|...
T Consensus       208 ~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~  250 (282)
T 4f3v_A          208 RAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDP  250 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCC
Confidence            789999999999999999999999999999999 8777666443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.97  E-value=8.1e-10  Score=102.31  Aligned_cols=85  Identities=14%  Similarity=0.104  Sum_probs=72.2

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHH
Q 008613           55 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRF----------SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY  124 (559)
Q Consensus        55 aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y----------~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~y  124 (559)
                      .+...++..++..+..++.|.+.|.++...++|          ++||..|++||+++|..+.         +|+++|.+|
T Consensus        20 eA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~---------A~~~LG~ay   90 (158)
T 1zu2_A           20 QIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE---------AVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH---------HHHHHHHHH
Confidence            344444555555555599999999999998875          5999999999999999865         999999999


Q ss_pred             HHcC-----------CHHHHHHHHHHHHHcCCCCH
Q 008613          125 LKTK-----------QYDECIKVGSEVLAYDAKNV  148 (559)
Q Consensus       125 lklg-----------~y~eAi~~~~~AL~ldP~~~  148 (559)
                      ..+|           +|++|+.+|++||+++|++.
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            9885           89999999999999999984

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.96  E-value=1.1e-08  Score=104.84  Aligned_cols=171  Identities=9%  Similarity=-0.098  Sum_probs=141.2

Q ss_pred             CCHHHHHHHHHHhhCCChHHHHHHHH--H-HHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHH----HHc---CCH
Q 008613           18 MRPEDLKCAAEQLTHTPPEEVAEIGE--K-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNEL----YSE---GRF   87 (559)
Q Consensus        18 m~pedl~~a~e~l~~~~pee~~~~~~--~-~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~----~k~---g~y   87 (559)
                      -..++.....+.+-...|+..-.-..  . +..+....+....+.+...+...++....|..++.++    ...   +++
T Consensus        47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~  126 (306)
T 3dra_A           47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP  126 (306)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred             CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence            34455666666666667776544222  1 2222212455666777777777888888999999988    666   899


Q ss_pred             HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--
Q 008613           88 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD--ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR--  163 (559)
Q Consensus        88 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~--eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~--  163 (559)
                      .+++.+|.+++..+|.+..         +|++|+.++.+++.|+  ++++.|+++|+++|.|..+|+.|+.++..+++  
T Consensus       127 ~~EL~~~~~~l~~~pkny~---------aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~  197 (306)
T 3dra_A          127 YREFDILEAMLSSDPKNHH---------VWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA  197 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC
T ss_pred             HHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc
Confidence            9999999999999999865         9999999999999999  99999999999999999999999999999998  


Q ss_pred             ----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          164 ----LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       164 ----~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                          +++++..+++++.++|+|..+|..++.+...+++
T Consensus       198 ~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          198 TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred             hhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence                9999999999999999999999999999888764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.96  E-value=1.6e-09  Score=93.34  Aligned_cols=84  Identities=8%  Similarity=0.062  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      .+..+..+..+|.+++..|+|++|+..|.+++++.|.++.         +++++|.||..+|+|++|+..|.++++++|+
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~   93 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA---------LRVFYAMVLYNLGRYEQGVELLLKIIAETSD   93 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            3555889999999999999999999999999999998865         9999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHH
Q 008613          147 NVKALYRRGQAYK  159 (559)
Q Consensus       147 ~~kal~~rG~A~~  159 (559)
                      ++........+..
T Consensus        94 ~~~~~~~~~ai~~  106 (117)
T 3k9i_A           94 DETIQSYKQAILF  106 (117)
T ss_dssp             CHHHHHTHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            9876544433333

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.96  E-value=3.5e-09  Score=103.96  Aligned_cols=124  Identities=15%  Similarity=0.145  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHhHHhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH---
Q 008613           54 ATMRARIDAQMNYEFNAAKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK---  126 (559)
Q Consensus        54 ~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk---  126 (559)
                      ..+...++...+  ...+..+..+|.+++.    .+++++|+.+|.+++++.  +         ..+++++|.+|..   
T Consensus        23 ~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---------~~a~~~lg~~~~~g~~   89 (273)
T 1ouv_A           23 TQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y---------SNGCHLLGNLYYSGQG   89 (273)
T ss_dssp             HHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C---------HHHHHHHHHHHhCCCC
Confidence            334444444433  3345667777777777    777777777777777763  2         2377777777777   


Q ss_pred             -cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          127 -TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       127 -lg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~----lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                       .+++++|+..|++++++  +++.+++.+|.+|..    .+++++|+.+|++++++.  +..++..++.+...
T Consensus        90 ~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  158 (273)
T 1ouv_A           90 VSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDA  158 (273)
T ss_dssp             SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence             77777777777777776  377777777777777    777777777777777764  45566666666554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.95  E-value=4.3e-09  Score=87.03  Aligned_cols=79  Identities=6%  Similarity=-0.018  Sum_probs=61.7

Q ss_pred             HHHHHHhcCCCCCchhhhhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613           94 YLLAKKNLQGIHSSEGRTLLLA-CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLS  172 (559)
Q Consensus        94 Y~kAL~l~p~~~~~e~~~l~~~-~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dle  172 (559)
                      |.+|+.......  ........ +|+++|.||..+|+|++|+..|+++++++|++..++++        +.+.+++..|+
T Consensus        16 ~~~A~~~~~~al--~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~   85 (99)
T 2kc7_A           16 IENALQALEEFL--QTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYN   85 (99)
T ss_dssp             HHHHHHHHHHHH--HHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH--HHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHH
Confidence            666666543211  11122345 89999999999999999999999999999999998865        67888999999


Q ss_pred             HHHHhCCCCH
Q 008613          173 NAHEVSPDDG  182 (559)
Q Consensus       173 kAl~l~P~~~  182 (559)
                      +++.++|++.
T Consensus        86 ~~~~~~p~~~   95 (99)
T 2kc7_A           86 KDMYNQLEHH   95 (99)
T ss_dssp             CTTHHHHCCS
T ss_pred             HHhccCcccc
Confidence            9888888753

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.95  E-value=1.8e-08  Score=84.75  Aligned_cols=83  Identities=27%  Similarity=0.339  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      ...+...|.+++..|+|++|+..|.+++.+.|.++.         ++++++.+|...|++++|+..+.++++++|+++.+
T Consensus        43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  113 (125)
T 1na0_A           43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA  113 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Confidence            677889999999999999999999999999887644         88999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 008613          151 LYRRGQAYKDIG  162 (559)
Q Consensus       151 l~~rG~A~~~lg  162 (559)
                      +..++.++...|
T Consensus       114 ~~~l~~~~~~~g  125 (125)
T 1na0_A          114 KQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcc
Confidence            999999987654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.95  E-value=1.5e-08  Score=84.58  Aligned_cols=103  Identities=9%  Similarity=0.026  Sum_probs=86.7

Q ss_pred             hhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchh
Q 008613           30 LTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG  109 (559)
Q Consensus        30 l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~  109 (559)
                      +...+.++......++....|.+                  +..+...|.+++..|+|++|+..|.+++.+.|.++.   
T Consensus        15 ~~~~~~~~A~~~~~~~~~~~~~~------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---   73 (118)
T 1elw_A           15 LSVGNIDDALQCYSEAIKLDPHN------------------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK---   73 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTC------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---
T ss_pred             HHcccHHHHHHHHHHHHHHCCCc------------------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH---
Confidence            34455555555555555555544                  778999999999999999999999999999888754   


Q ss_pred             hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008613          110 RTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK  159 (559)
Q Consensus       110 ~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~  159 (559)
                            +++++|.+|..+|++++|+..+.++++++|+++.++..++.+..
T Consensus        74 ------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           74 ------GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             ------HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence                  89999999999999999999999999999999999999887753

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.94  E-value=1.5e-08  Score=99.35  Aligned_cols=125  Identities=14%  Similarity=0.096  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH--
Q 008613           53 IATMRARIDAQMNYEFNAAKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK--  126 (559)
Q Consensus        53 ~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk--  126 (559)
                      +..+...+....+..  .+..+..+|.+++.    .+++++|+..|.++++..  +         ..+++++|.+|..  
T Consensus        58 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---------~~a~~~lg~~~~~~~  124 (273)
T 1ouv_A           58 LKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y---------AEGCASLGGIYHDGK  124 (273)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C---------ccHHHHHHHHHHcCC
Confidence            344444444444332  57889999999999    999999999999999873  3         2489999999999  


Q ss_pred             --cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          127 --TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       127 --lg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~----lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                        .+++++|+..|+++++++  ++.+++++|.+|..    .+++++|+.+|++++++  ++..++..++.+...
T Consensus       125 ~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~  194 (273)
T 1ouv_A          125 VVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHH  194 (273)
T ss_dssp             SSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             CcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence              999999999999999986  78999999999999    99999999999999987  467788888888766

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.92  E-value=7.9e-09  Score=108.30  Aligned_cols=96  Identities=9%  Similarity=0.003  Sum_probs=88.8

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613           66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA  145 (559)
Q Consensus        66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP  145 (559)
                      .....+..+.++|.+|++.|+|++|+.+|.++|++.|.++.         +|+++|.||..+|+|++|+.+|+++++++|
T Consensus       268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P  338 (370)
T 1ihg_A          268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK---------ALYRRAQGWQGLKEYDQALADLKKAQEIAP  338 (370)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            45566889999999999999999999999999999887754         999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHH
Q 008613          146 KNVKALYRRGQAYKDIGRLEEAVSD  170 (559)
Q Consensus       146 ~~~kal~~rG~A~~~lg~~eeAi~d  170 (559)
                      ++..++..++.++..+++++++.+.
T Consensus       339 ~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          339 EDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999887654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.91  E-value=1.8e-08  Score=106.25  Aligned_cols=135  Identities=12%  Similarity=0.023  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH--
Q 008613           52 EIATMRARIDAQMNYEFNAAKMLKKQGNELYS---EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK--  126 (559)
Q Consensus        52 e~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k---~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk--  126 (559)
                      ++..+...++..+...+..+..+...|.+++.   .+++.+|++.|.++++++|.++.         ++.+++.++..  
T Consensus       153 ~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~---------~~~~l~~~~~~~~  223 (472)
T 4g1t_A          153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY---------LKVLLALKLHKMR  223 (472)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH---------HHHHHHHHHHHCC
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH---------HHHHHHHHHHHHH
Confidence            34455566666666666667777777777543   56778888889999988887754         67777766554  


Q ss_pred             --cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          127 --TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       127 --lg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                        .+++++|+..+++++.++|+++.+++++|.+|...|++++|+..|+++++++|++..++..++.+....
T Consensus       224 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~  294 (472)
T 4g1t_A          224 EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK  294 (472)
T ss_dssp             ------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence              467899999999999999999999999999999999999999999999999999999999998876544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.90  E-value=4.6e-09  Score=116.41  Aligned_cols=134  Identities=9%  Similarity=-0.048  Sum_probs=120.1

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC-CHH
Q 008613           55 TMRARIDAQMNYEFNAAKMLKKQGNELYSEG--RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYD  131 (559)
Q Consensus        55 aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g--~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg-~y~  131 (559)
                      .+....+..+...++...+|..++.++.+.+  +|++++++|.++++++|.+..         +|++|+.++.+++ .++
T Consensus        91 ~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~---------aW~~R~~~l~~l~~~~~  161 (567)
T 1dce_A           91 AELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH---------CWDYRRFVAAQAAVAPA  161 (567)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTCCCHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccccc---------HHHHHHHHHHHcCCChH
Confidence            3445555556667777889999999999999  779999999999999998855         9999999999999 999


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          132 ECIKVGSEVLAYDAKNVKALYRRGQAYKDI--------------GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       132 eAi~~~~~AL~ldP~~~kal~~rG~A~~~l--------------g~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                      +++++++++|+++|.+..+|+.|+.++..+              +.+++|++++.+|+.++|+|..+|..++.+....++
T Consensus       162 ~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence            999999999999999999999999999986              668999999999999999999999999988777655

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.90  E-value=6.3e-08  Score=89.50  Aligned_cols=112  Identities=14%  Similarity=0.105  Sum_probs=94.2

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613           66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA  145 (559)
Q Consensus        66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP  145 (559)
                      .....+..+...|.+++..|+|++|+.+|.+++.+....++.  ......+++++|.+|..+|+|++|+..+.+++++.+
T Consensus        61 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  138 (203)
T 3gw4_A           61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED--PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ  138 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            455668889999999999999999999999999986544321  223567899999999999999999999999997643


Q ss_pred             C--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613          146 K--N----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  179 (559)
Q Consensus       146 ~--~----~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P  179 (559)
                      .  +    ..++..+|.+|...|++++|+..|++++.+..
T Consensus       139 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          139 QADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            2  2    35679999999999999999999999998854

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.90  E-value=5.3e-08  Score=100.75  Aligned_cols=134  Identities=10%  Similarity=-0.021  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhcCCCC
Q 008613           36 EEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR----------FSNALQKYLLAKKNLQGIH  105 (559)
Q Consensus        36 ee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~----------y~eAi~~Y~kAL~l~p~~~  105 (559)
                      ++....+.++....|+.                  ...|..++.++...++          |.+++.++.++|..+|.+.
T Consensus        47 ~eaL~~t~~~L~~nP~~------------------ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny  108 (331)
T 3dss_A           47 ESVLELTSQILGANPDF------------------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY  108 (331)
T ss_dssp             HHHHHHHHHHHTTCTTC------------------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHCchh------------------HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH
Confidence            34556666677777776                  5566666666555444          7899999999999999986


Q ss_pred             CchhhhhHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCH
Q 008613          106 SSEGRTLLLACSLNSMSCYLKTKQ--YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR-LEEAVSDLSNAHEVSPDDG  182 (559)
Q Consensus       106 ~~e~~~l~~~~~~nlA~~ylklg~--y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~-~eeAi~dlekAl~l~P~~~  182 (559)
                      .         +|++|+.|+..+++  |++++..|+++++++|.|..+|+.|+.++..++. +++++.++.+++.++|.|.
T Consensus       109 ~---------aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~  179 (331)
T 3dss_A          109 G---------TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY  179 (331)
T ss_dssp             H---------HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCH
T ss_pred             H---------HHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCH
Confidence            5         99999999999994  9999999999999999999999999999999999 6999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 008613          183 TIADVLRDAKEILM  196 (559)
Q Consensus       183 ~a~~~L~~a~~~l~  196 (559)
                      .+|..+..+...+.
T Consensus       180 SAW~~R~~ll~~l~  193 (331)
T 3dss_A          180 SSWHYRSCLLPQLH  193 (331)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988873

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.89  E-value=4.5e-09  Score=90.50  Aligned_cols=94  Identities=17%  Similarity=0.099  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 008613          116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV---KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---GTIADVLR  189 (559)
Q Consensus       116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~---kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~---~~a~~~L~  189 (559)
                      .++++|.+++..|+|++|+..|.++++.+|+++   .+++.+|.+|...|+|++|+..|++++.++|++   +.++..++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            578999999999999999999999999999998   899999999999999999999999999999999   88899999


Q ss_pred             HHHHHHHhhcCCCCCccchh
Q 008613          190 DAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       190 ~a~~~l~~~~~~~~~~~~~i  209 (559)
                      .+...+++...+...++.++
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~  103 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVA  103 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHH
Confidence            99888877766555555554

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.87  E-value=3.1e-08  Score=99.02  Aligned_cols=139  Identities=15%  Similarity=0.090  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613           68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  147 (559)
Q Consensus        68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~  147 (559)
                      +.....+..++..++..|+|++|++.|.+++...+....   .......++.+|.+|...|+|++|+..+.+++++.+..
T Consensus        72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  148 (293)
T 2qfc_A           72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE---FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG  148 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH---HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh---HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence            445677888999999999999999999999998665321   23345567889999999999999999999999876544


Q ss_pred             ------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          148 ------VKALYRRGQAYKDIGRLEEAVSDLSNAH---EVSPDDG----TIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       148 ------~kal~~rG~A~~~lg~~eeAi~dlekAl---~l~P~~~----~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                            ..+|+.+|.+|..+|+|++|+..|++++   ...|++.    .++..++.+...+++.+.+...+.+++
T Consensus       149 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal  223 (293)
T 2qfc_A          149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence                  6799999999999999999999999999   4566653    577888888888877776666666555

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.86  E-value=1.4e-08  Score=110.62  Aligned_cols=130  Identities=12%  Similarity=0.088  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-----D  144 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l-----d  144 (559)
                      .+..+.+.+..+..+|+|++|+..|.++|++....-. +.+...+..+.|+|.+|..+|+|++|+.+|.++|++     .
T Consensus       308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg-~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG  386 (490)
T 3n71_A          308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFA-DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH  386 (490)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBC-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence            3555666777888999999999999999998655332 234457789999999999999999999999999975     4


Q ss_pred             CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHHHhhcC
Q 008613          145 AKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEV-----SPDDGTIA---DVLRDAKEILMKEDG  200 (559)
Q Consensus       145 P~~---~kal~~rG~A~~~lg~~eeAi~dlekAl~l-----~P~~~~a~---~~L~~a~~~l~~~~~  200 (559)
                      |++   ...|+++|.+|..+|+|++|+..|++|+.+     -|+++.+.   ..|..++..++.++.
T Consensus       387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~  453 (490)
T 3n71_A          387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ  453 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            555   578999999999999999999999999986     46776544   455556655555544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=7.1e-08  Score=84.26  Aligned_cols=108  Identities=8%  Similarity=-0.060  Sum_probs=88.4

Q ss_pred             HHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc
Q 008613           28 EQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS  107 (559)
Q Consensus        28 e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~  107 (559)
                      ..+...+.++......++....|+.               ......+...|.+++..|+|++|+..|.+++.+.|.++. 
T Consensus        37 ~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-  100 (148)
T 2dba_A           37 ELFKCGDYGGALAAYTQALGLDATP---------------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK-  100 (148)
T ss_dssp             HHHTTTCHHHHHHHHHHHHTSCCCH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH-
T ss_pred             HHHHhCCHHHHHHHHHHHHHHcccc---------------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH-
Confidence            3445556666666666655555543               113678889999999999999999999999999888754 


Q ss_pred             hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008613          108 EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK  159 (559)
Q Consensus       108 e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~  159 (559)
                              +|+++|.||..+|+|++|+..|.++++++|++..++..++.+..
T Consensus       101 --------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          101 --------ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             --------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             --------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence                    89999999999999999999999999999999999888877654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.82  E-value=5.9e-08  Score=99.44  Aligned_cols=126  Identities=12%  Similarity=0.014  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD------  144 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld------  144 (559)
                      +..+...|..++..|+|++|+..|.+++.+.+....   ......+++++|.+|...|+|++|+..|++++++.      
T Consensus        53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~  129 (373)
T 1hz4_A           53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV---WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE  129 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence            456677788888888888888888888877665443   22334567778888888888888888888887764      


Q ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHhhc
Q 008613          145 --AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-----GTIADVLRDAKEILMKED  199 (559)
Q Consensus       145 --P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~-----~~a~~~L~~a~~~l~~~~  199 (559)
                        |....+++.+|.+|...|++++|+..|++++.+.+..     ..++..++.+....++..
T Consensus       130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~  191 (373)
T 1hz4_A          130 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLD  191 (373)
T ss_dssp             TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHH
T ss_pred             cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHH
Confidence              3345667778888888888888888888888777642     234555555555554443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.81  E-value=3.9e-08  Score=94.06  Aligned_cols=112  Identities=11%  Similarity=0.002  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 008613           70 AAKMLKKQGNELYSEG----RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVL  141 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g----~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk----lg~y~eAi~~~~~AL  141 (559)
                      .+..+..+|.+|.. +    ++++|+.+|.++++.  .++         .+++++|.+|..    .+++++|+..|++++
T Consensus        49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g~~---------~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  116 (212)
T 3rjv_A           49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--GSK---------SGEIVLARVLVNRQAGATDVAHAITLLQDAA  116 (212)
T ss_dssp             CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--TCH---------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--CCH---------HHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Confidence            36778889999888 6    899999999999763  443         389999999988    889999999999999


Q ss_pred             HcCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          142 AYDA--KNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       142 ~ldP--~~~kal~~rG~A~~~----lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                      ++.|  +++.+++++|.+|..    .+++++|+.+|++++++ |.++.+...|+.+...
T Consensus       117 ~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A          117 RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred             HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence            9888  469999999999999    88999999999999998 6677788888877654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.79  E-value=1.4e-07  Score=97.57  Aligned_cols=168  Identities=12%  Similarity=0.020  Sum_probs=135.0

Q ss_pred             CCHHHHHHHHHHhhCCChHHHHHHHHH---HHc----cCcHH----HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCC
Q 008613           18 MRPEDLKCAAEQLTHTPPEEVAEIGEK---LAN----ASPEE----IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR   86 (559)
Q Consensus        18 m~pedl~~a~e~l~~~~pee~~~~~~~---~~~----~~pee----~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~   86 (559)
                      -..++.-.+.+.+-...|+.+..-..+   +..    ..+++    +.....-+...+...++....|..++.++...++
T Consensus        44 e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~  123 (331)
T 3dss_A           44 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE  123 (331)
T ss_dssp             CCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSS
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCc
Confidence            334555666677777788765442221   111    12222    3445566666677788889999999999999884


Q ss_pred             --HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--
Q 008613           87 --FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-YDECIKVGSEVLAYDAKNVKALYRRGQAYKDI--  161 (559)
Q Consensus        87 --y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~-y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~l--  161 (559)
                        |.+++.+|.++++.+|.+..         +|++++.+...++. +++++++++++|+++|.|..+|+.|+.++..+  
T Consensus       124 ~~~~~EL~~~~k~l~~dprNy~---------AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~  194 (331)
T 3dss_A          124 PNWARELELCARFLEADERNFH---------CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP  194 (331)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSC
T ss_pred             ccHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhh
Confidence              99999999999999998865         99999999999999 69999999999999999999999999999998  


Q ss_pred             ------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          162 ------------GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       162 ------------g~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                                  +.+++++.++.+++.++|+|..+|..+..+...
T Consensus       195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~  239 (331)
T 3dss_A          195 QPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA  239 (331)
T ss_dssp             CC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence                        569999999999999999999999877666543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.78  E-value=3.3e-08  Score=102.94  Aligned_cols=136  Identities=11%  Similarity=-0.049  Sum_probs=120.6

Q ss_pred             hHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCCCchhhhhH
Q 008613           35 PEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG-RFSNALQKYLLAKKNLQGIHSSEGRTLL  113 (559)
Q Consensus        35 pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g-~y~eAi~~Y~kAL~l~p~~~~~e~~~l~  113 (559)
                      .++......++....|+.                  ...|..++.++...+ .+++++..+.++|..+|.+..       
T Consensus        70 se~AL~lt~~~L~~nP~~------------------ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~-------  124 (349)
T 3q7a_A           70 SERALELTEIIVRMNPAH------------------YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQ-------  124 (349)
T ss_dssp             SHHHHHHHHHHHHHCTTC------------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH-------
T ss_pred             CHHHHHHHHHHHHhCchh------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH-------
Confidence            344555556666666666                  888999999999999 599999999999999999865       


Q ss_pred             HHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHH
Q 008613          114 LACSLNSMSCYLKT-K-QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE--------EAVSDLSNAHEVSPDDGT  183 (559)
Q Consensus       114 ~~~~~nlA~~ylkl-g-~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~e--------eAi~dlekAl~l~P~~~~  183 (559)
                        +|+.|+.|+..+ + ++++++..|.++|+++|+|..+|+.|+.++..+++++        +++..++++++++|.|..
T Consensus       125 --aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~S  202 (349)
T 3q7a_A          125 --VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNS  202 (349)
T ss_dssp             --HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             --HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHH
Confidence              999999999998 8 9999999999999999999999999999999999988        999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 008613          184 IADVLRDAKEILMK  197 (559)
Q Consensus       184 a~~~L~~a~~~l~~  197 (559)
                      +|...+.+...+.+
T Consensus       203 AW~~R~~lL~~l~~  216 (349)
T 3q7a_A          203 AWGWRWYLRVSRPG  216 (349)
T ss_dssp             HHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHhccc
Confidence            99999988776643

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.77  E-value=4e-08  Score=90.16  Aligned_cols=103  Identities=12%  Similarity=0.142  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHc
Q 008613           87 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK---QYDECIKVGSEVLAYD-A-KNVKALYRRGQAYKDI  161 (559)
Q Consensus        87 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg---~y~eAi~~~~~AL~ld-P-~~~kal~~rG~A~~~l  161 (559)
                      ...+.+.|.+.+...+..         ..+.++.|.|+.+.+   +++++|..++.+++.+ | ++..++|++|.+|+.+
T Consensus        14 l~~~~~~y~~e~~~~~~~---------~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl   84 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVS---------KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL   84 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCC---------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHccCCCc---------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHc
Confidence            456777888888765644         348999999999988   7779999999999999 7 6799999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613          162 GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  198 (559)
Q Consensus       162 g~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~  198 (559)
                      ++|++|+.+++++|+++|+|..+......+.+++.+.
T Consensus        85 ~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~kd  121 (152)
T 1pc2_A           85 KEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD  121 (152)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998888653

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.77  E-value=1.9e-08  Score=84.51  Aligned_cols=81  Identities=12%  Similarity=-0.004  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--N  147 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~--~  147 (559)
                      .+..+..+|.+++..|+|++|+..|.++++++|.++.         +|+++|.||..+|+|++|+..|++++++.|.  +
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~   76 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG---------TYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT   76 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence            3778999999999999999999999999999999876         9999999999999999999999999998764  3


Q ss_pred             HHHHHHHHHHHH
Q 008613          148 VKALYRRGQAYK  159 (559)
Q Consensus       148 ~kal~~rG~A~~  159 (559)
                      ..+...+...+.
T Consensus        77 ~~~~~~l~~~l~   88 (100)
T 3ma5_A           77 QKDLSELQDAKL   88 (100)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH
Confidence            444444444433

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.77  E-value=5.9e-08  Score=105.25  Aligned_cols=146  Identities=5%  Similarity=-0.143  Sum_probs=117.5

Q ss_pred             HHHHHHHHhH-HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHH
Q 008613           56 MRARIDAQMN-YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  134 (559)
Q Consensus        56 a~~~l~~~~~-~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi  134 (559)
                      +.+.+...+. ..+.....+...|..+.+.|++++|+..|.+++.+.|.++        ..+|.+++.++.+.|++++|+
T Consensus       305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--------~~~~~~~~~~~~~~~~~~~A~  376 (530)
T 2ooe_A          305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--------TLVYIQYMKFARRAEGIKSGR  376 (530)
T ss_dssp             HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc--------hHHHHHHHHHHHHhcCHHHHH
Confidence            4444455444 3455688899999999999999999999999999877653        138999999999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          135 KVGSEVLAYDAKNVKALYRRGQA-YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       135 ~~~~~AL~ldP~~~kal~~rG~A-~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      ..|.++++..|.....+...+.. +...|++++|+..|+++++++|+++.++..+..+...+++..++..-+++++
T Consensus       377 ~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al  452 (530)
T 2ooe_A          377 MIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL  452 (530)
T ss_dssp             HHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHH
Confidence            99999999999888888776665 4469999999999999999999999999888887766655444433344333

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.77  E-value=2e-08  Score=85.58  Aligned_cols=84  Identities=8%  Similarity=-0.086  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--N  147 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~--~  147 (559)
                      .+..+..+|.+++..|+|++|+..|.+++.+.|.++.         +|+++|.||..+|++++|+..|+++++++|.  +
T Consensus        18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~   88 (115)
T 2kat_A           18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV---------AWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD   88 (115)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccc
Confidence            3788999999999999999999999999999888754         8999999999999999999999999999884  4


Q ss_pred             HHHHHHHHHHHHHcC
Q 008613          148 VKALYRRGQAYKDIG  162 (559)
Q Consensus       148 ~kal~~rG~A~~~lg  162 (559)
                      ..++..+...+..++
T Consensus        89 ~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           89 QQVVKELQVFLRRLA  103 (115)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc
Confidence            455444444444433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.76  E-value=1.4e-08  Score=86.34  Aligned_cols=96  Identities=13%  Similarity=0.035  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 008613          114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-------GTIAD  186 (559)
Q Consensus       114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~-------~~a~~  186 (559)
                      ..+|+++|.+|...|+|++|+..|.++++++|+++.+++.+|.+|...|++++|+..|++++.++|++       ..++.
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999998877       78888


Q ss_pred             HHHHHHHHHHhhcCCCCCccchh
Q 008613          187 VLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       187 ~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      .++.+...+++...+...+.+++
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~  106 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSL  106 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHH
Confidence            88888888776665544444444

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.74  E-value=3.7e-08  Score=102.60  Aligned_cols=170  Identities=9%  Similarity=-0.041  Sum_probs=137.9

Q ss_pred             CCHHHHHHHHHHhhCCChHHHHHHHHH---HHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHc-C-CHHHHHH
Q 008613           18 MRPEDLKCAAEQLTHTPPEEVAEIGEK---LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE-G-RFSNALQ   92 (559)
Q Consensus        18 m~pedl~~a~e~l~~~~pee~~~~~~~---~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~-g-~y~eAi~   92 (559)
                      -..++...+.+.+-...|+....-..+   +..+. ..+.....-+...+...++....|..++.++... + ++.+++.
T Consensus        68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~-~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~  146 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLN-KSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE  146 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence            344455556666666677655432221   22221 1244556666677777888899999999999987 7 9999999


Q ss_pred             HHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-
Q 008613           93 KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD--------ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR-  163 (559)
Q Consensus        93 ~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~--------eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~-  163 (559)
                      +|.++|..+|.+..         +|++|+.++.+++.++        +++++++++|+++|.|..+|+.|+.++..+++ 
T Consensus       147 ~~~k~L~~dpkNy~---------AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~  217 (349)
T 3q7a_A          147 YIHGSLLPDPKNYH---------TWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGA  217 (349)
T ss_dssp             HHHHHTSSCTTCHH---------HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTC
T ss_pred             HHHHHHHhCCCCHH---------HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc
Confidence            99999999998865         9999999999999988        99999999999999999999999999999997 


Q ss_pred             ------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          164 ------LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       164 ------~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                            ++++++.+++++.++|+|..+|..+..+....++
T Consensus       218 ~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          218 ETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence                  8999999999999999999999998888776643

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.73  E-value=1.6e-07  Score=89.67  Aligned_cols=113  Identities=9%  Similarity=-0.045  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 008613           70 AAKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVL  141 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk----lg~y~eAi~~~~~AL  141 (559)
                      .+..+..+|.+|+.    .+++.+|+.+|.++++..+.+       -...+++++|.+|..    .+++++|+.+|++++
T Consensus        84 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~-------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  156 (212)
T 3rjv_A           84 SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD-------AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS  156 (212)
T ss_dssp             CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH-------HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc-------chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            46778899999998    999999999999999875521       013489999999999    889999999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008613          142 AYDAKNVKALYRRGQAYKDI-G-----RLEEAVSDLSNAHEVSPDDGTIADVLRDAK  192 (559)
Q Consensus       142 ~ldP~~~kal~~rG~A~~~l-g-----~~eeAi~dlekAl~l~P~~~~a~~~L~~a~  192 (559)
                      ++ |.++.+++++|.+|..- +     ++++|+.+|+++++.  .+..+...|..+.
T Consensus       157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~--g~~~A~~~l~~l~  210 (212)
T 3rjv_A          157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE--GFDTGCEEFDRIS  210 (212)
T ss_dssp             HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred             Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHhh
Confidence            98 77888999999999865 3     899999999999987  4566666666553

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.71  E-value=2.2e-07  Score=99.67  Aligned_cols=116  Identities=12%  Similarity=0.217  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCC-
Q 008613           74 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-----DAKN-  147 (559)
Q Consensus        74 lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l-----dP~~-  147 (559)
                      ...........|+|++|+..|.++|++....-. +.+...+..+.|+|.+|..+|+|++|+.+|.++|++     .|++ 
T Consensus       301 ~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg-~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp  379 (433)
T 3qww_A          301 VIEEFRRAKHYKSPSELLEICELSQEKMSSVFE-DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL  379 (433)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBC-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred             HHHHHHHhhhccCHHHHHHHHHHHHHHhhCccC-hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            334444455678999999999999997654321 224457789999999999999999999999999975     4454 


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHH
Q 008613          148 --VKALYRRGQAYKDIGRLEEAVSDLSNAHEV-----SPDDGTIADVLRD  190 (559)
Q Consensus       148 --~kal~~rG~A~~~lg~~eeAi~dlekAl~l-----~P~~~~a~~~L~~  190 (559)
                        +..|+++|.+|..+|+|++|+..|++|+++     -|+++.+......
T Consensus       380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~  429 (433)
T 3qww_A          380 NVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQE  429 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence              568999999999999999999999999986     4788876654443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.65  E-value=2.3e-07  Score=99.37  Aligned_cols=119  Identities=13%  Similarity=0.109  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC
Q 008613           72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-----DAK  146 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l-----dP~  146 (559)
                      +.+...-..+..+|+|++|+..|.++|.+....- .+.+......+.|++.+|..+|+|++|+.+|.++|.+     .|+
T Consensus       288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~l-g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~  366 (429)
T 3qwp_A          288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERL-PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS  366 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCC-CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcC-CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence            3444556667889999999999999998754332 1234557789999999999999999999999999975     345


Q ss_pred             C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Q 008613          147 N---VKALYRRGQAYKDIGRLEEAVSDLSNAHEV-----SPDDGTIADVLRDA  191 (559)
Q Consensus       147 ~---~kal~~rG~A~~~lg~~eeAi~dlekAl~l-----~P~~~~a~~~L~~a  191 (559)
                      +   ...|+++|.+|..+|+|++|+..|++|+++     -|+++.+...+..+
T Consensus       367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l  419 (429)
T 3qwp_A          367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLL  419 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            5   568999999999999999999999999986     47787666554433

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.60  E-value=2e-07  Score=101.08  Aligned_cols=135  Identities=6%  Similarity=-0.093  Sum_probs=104.4

Q ss_pred             HHHHHHHHHhHHhHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHH-HHHHcCCHHH
Q 008613           55 TMRARIDAQMNYEFNA-AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS-CYLKTKQYDE  132 (559)
Q Consensus        55 aa~~~l~~~~~~~~~~-a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~-~ylklg~y~e  132 (559)
                      .+...++..+...+.. ...|...|..+.+.|++++|+..|.+|++..|....         ++...+. +|...|++++
T Consensus       339 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~---------~~~~~a~~~~~~~~~~~~  409 (530)
T 2ooe_A          339 KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH---------VYVTAALMEYYCSKDKSV  409 (530)
T ss_dssp             HHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH---------HHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH---------HHHHHHHHHHHHcCChhH
Confidence            3444444444433332 358889999999999999999999999998666432         4444443 3557999999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHhh
Q 008613          133 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT----IADVLRDAKEILMKE  198 (559)
Q Consensus       133 Ai~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~----a~~~L~~a~~~l~~~  198 (559)
                      |+..|+++++++|+++.+|...+..+..+|++++|...|++++...|.++.    +|..........++.
T Consensus       410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~  479 (530)
T 2ooe_A          410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL  479 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            999999999999999999999999999999999999999999998776543    776655555554433

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.59  E-value=3e-07  Score=100.06  Aligned_cols=112  Identities=7%  Similarity=-0.043  Sum_probs=93.8

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 008613           66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--  143 (559)
Q Consensus        66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l--  143 (559)
                      ..+..+..+.++|..|...|+|++|+.+|.++|.+....-. +.+...+..++|+|.+|..+|+|++|+..|.+|+++  
T Consensus       346 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG-~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~  424 (490)
T 3n71_A          346 TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH-HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL  424 (490)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            35677999999999999999999999999999987532111 123447789999999999999999999999999975  


Q ss_pred             ---CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613          144 ---DAKNV---KALYRRGQAYKDIGRLEEAVSDLSNAHEVS  178 (559)
Q Consensus       144 ---dP~~~---kal~~rG~A~~~lg~~eeAi~dlekAl~l~  178 (559)
                         .|+++   +.+..++.++..++.|++|...|+++.+..
T Consensus       425 ~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          425 VTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               56664   567899999999999999999999886543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.58  E-value=4.1e-07  Score=77.42  Aligned_cols=83  Identities=12%  Similarity=0.032  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      +..++.+|..++..++|..|+..|.+|++..+....  .......++.++|.||.++|++++|+..++++++++|++..+
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~--~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI--STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC--CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC--CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            456788999999999999999999999998654321  011245688899999999999999999999999999988888


Q ss_pred             HHHHH
Q 008613          151 LYRRG  155 (559)
Q Consensus       151 l~~rG  155 (559)
                      +.+++
T Consensus        83 ~~n~~   87 (104)
T 2v5f_A           83 NGNLK   87 (104)
T ss_dssp             HHHHH
T ss_pred             HhhHH
Confidence            77775

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.57  E-value=6.2e-07  Score=80.13  Aligned_cols=98  Identities=11%  Similarity=-0.016  Sum_probs=85.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008613           77 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVLAYDAKNVKALY  152 (559)
Q Consensus        77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk----lg~y~eAi~~~~~AL~ldP~~~kal~  152 (559)
                      +|..|...+.+++|+.+|.++.+.  .++         .+++++|.+|..    .+++++|+.+|+++.+.  .++.+++
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~---------~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~   97 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSG---------NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCL   97 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCH---------HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCH---------HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHH
Confidence            899999999999999999999986  333         389999999999    89999999999999987  7899999


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613          153 RRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLR  189 (559)
Q Consensus       153 ~rG~A~~~----lg~~eeAi~dlekAl~l~P~~~~a~~~L~  189 (559)
                      ++|.+|..    .+++++|+.+|+++.+.  .++.+...|+
T Consensus        98 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~  136 (138)
T 1klx_A           98 ILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN  136 (138)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred             HHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence            99999999    99999999999999987  4555554443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.54  E-value=7.2e-07  Score=75.87  Aligned_cols=84  Identities=15%  Similarity=0.057  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008613          114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYD-------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD  186 (559)
Q Consensus       114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld-------P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~  186 (559)
                      ...++.+|..+++.++|..|+..|.+|++..       +..+.++..+|.+|..+|++++|+..++++++++|+++.+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            3467899999999999999999999999863       346789999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHh
Q 008613          187 VLRDAKEILMK  197 (559)
Q Consensus       187 ~L~~a~~~l~~  197 (559)
                      ++..++..+..
T Consensus        85 n~~~~~~~~~~   95 (104)
T 2v5f_A           85 NLKYFEYIMAK   95 (104)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHh
Confidence            88877666543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.52  E-value=4.3e-07  Score=76.31  Aligned_cols=68  Identities=13%  Similarity=-0.019  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613          115 ACSLNSMSCYLKTKQ---YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  182 (559)
Q Consensus       115 ~~~~nlA~~ylklg~---y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~  182 (559)
                      .+++.+|.+++..++   .++|...+.++|+++|+++++++.+|.+++..|+|++|+..|++++..+|.++
T Consensus         7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            388899999976665   79999999999999999999999999999999999999999999999999853

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.52  E-value=6.8e-08  Score=97.67  Aligned_cols=130  Identities=15%  Similarity=0.074  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-H
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-N-V  148 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~-~-~  148 (559)
                      -+.....+..+...|+|++|++.|..++...|.+         . +++.+|.+|++.++|++|+..|++++...+. . .
T Consensus       102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~---------~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~  171 (282)
T 4f3v_A          102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEH---------L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAG  171 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH---------H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch---------H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHH
Confidence            3445568899999999999999999887654332         3 7899999999999999999999988876422 2 4


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHHhhcCCCCCccchhh
Q 008613          149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVS--PD-DGTIADVLRDAKEILMKEDGHHGPRGLLIE  210 (559)
Q Consensus       149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~--P~-~~~a~~~L~~a~~~l~~~~~~~~~~~~~i~  210 (559)
                      .+++.+|.++..+|++++|+.+|++++...  |. ..+++..++.+...+++..++...+++++.
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a  236 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT  236 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            589999999999999999999999998654  55 567889999999999988877766666653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.47  E-value=5e-07  Score=92.44  Aligned_cols=132  Identities=9%  Similarity=-0.017  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---  147 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---  147 (559)
                      +..+...|..++..|+|++|+.+|.+++...|...    ......+++++|.+|...|+|++|+..+.+++.+.|..   
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   89 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGW----FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW   89 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence            56677889999999999999999999999876432    22345688999999999999999999999999986643   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHhhcCCCCCcc
Q 008613          148 ---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP--------DDGTIADVLRDAKEILMKEDGHHGPRG  206 (559)
Q Consensus       148 ---~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P--------~~~~a~~~L~~a~~~l~~~~~~~~~~~  206 (559)
                         ..+++.+|.+|...|++++|+..|++++.+.+        ....++..++.+....++...+...++
T Consensus        90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  159 (373)
T 1hz4_A           90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR  159 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence               34588999999999999999999999999752        234456667777776665554433333

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.43  E-value=3.5e-06  Score=87.54  Aligned_cols=105  Identities=10%  Similarity=0.076  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC
Q 008613           72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY------DA  145 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l------dP  145 (559)
                      ..+...|.++...|++++|+.+|.+++...+....   ..+...++.++|.+|...|+|++|+..+.+++..      .+
T Consensus        96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~  172 (434)
T 4b4t_Q           96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR---VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP  172 (434)
T ss_dssp             HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC---CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc---cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence            34455677777778888888888888776554332   2346778999999999999999999999999876      33


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613          146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  179 (559)
Q Consensus       146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P  179 (559)
                      ..+.++..++.+|..+|+|++|...|++++.+.+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            4478999999999999999999999999998754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.40  E-value=5e-06  Score=89.08  Aligned_cols=110  Identities=15%  Similarity=0.005  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 008613           70 AAKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVL  141 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk----lg~y~eAi~~~~~AL  141 (559)
                      .+..+..+|..|+.    .+++++|+.+|.++++.  .++         .+++++|.+|..    .+++++|+..|++++
T Consensus        74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~---------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~  142 (490)
T 2xm6_A           74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP---------QAQQNLGVMYHEGNGVKVDKAESVKWFRLAA  142 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH---------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH---------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            35677778888888    88888888888888764  222         377788888887    778888888888887


Q ss_pred             HcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          142 AYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       142 ~ldP~~~kal~~rG~A~~~----lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                      +.  +++.+++.+|.+|..    .+++++|+.+|+++++.  +++.++..|+.+...
T Consensus       143 ~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~  195 (490)
T 2xm6_A          143 EQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSR  195 (490)
T ss_dssp             HT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Confidence            54  577888888888877    77888888888888765  566777777766554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.40  E-value=6.2e-06  Score=88.33  Aligned_cols=108  Identities=14%  Similarity=0.057  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHc
Q 008613           71 AKMLKKQGNELYSEG---RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVLAY  143 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g---~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk----lg~y~eAi~~~~~AL~l  143 (559)
                      +..+..+|..|+..|   ++++|+.+|+++++.  .++         .+++++|.+|..    .+++++|+..|+++++.
T Consensus       328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~---------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~  396 (490)
T 2xm6_A          328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEK---------AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ  396 (490)
T ss_dssp             HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCH---------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCH---------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence            566788999998866   899999999999986  332         389999999999    89999999999999976


Q ss_pred             CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Q 008613          144 DAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPD---DGTIADVLRDA  191 (559)
Q Consensus       144 dP~~~kal~~rG~A~~~----lg~~eeAi~dlekAl~l~P~---~~~a~~~L~~a  191 (559)
                        .++.+++++|.+|..    .+++++|+.+|++++++.|+   ++.+...|+.+
T Consensus       397 --~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~  449 (490)
T 2xm6_A          397 --GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL  449 (490)
T ss_dssp             --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred             --CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence              479999999999998    89999999999999999854   66666666554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.36  E-value=5.6e-06  Score=88.50  Aligned_cols=120  Identities=13%  Similarity=0.037  Sum_probs=72.6

Q ss_pred             HHHHHHHHhHHhHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHH-H--HHcC
Q 008613           56 MRARIDAQMNYEFNAAKMLKKQGNELYSE----GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC-Y--LKTK  128 (559)
Q Consensus        56 a~~~l~~~~~~~~~~a~~lk~~Gn~~~k~----g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~-y--lklg  128 (559)
                      +...+..........+..+..+|.+|..-    +++++|+.+|.++.   +.++.         +++++|.+ |  ...+
T Consensus       198 A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~---------a~~~Lg~~~~~~~~~~  265 (452)
T 3e4b_A          198 LLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA---------SWVSLAQLLYDFPELG  265 (452)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH---------HHHHHHHHHHHSGGGC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH---------HHHHHHHHHHhCCCCC
Confidence            33333333333333344456666666544    56677777777665   45443         66677776 3  3566


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613          129 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-----RLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  193 (559)
Q Consensus       129 ~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg-----~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~  193 (559)
                      ++++|+.+|+++++.  +++.+++++|.+|. .|     ++++|+.+|++++   ++++.+...|+.+..
T Consensus       266 d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~  329 (452)
T 3e4b_A          266 DVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYR  329 (452)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence            777777777777643  36777777777776 44     6777777777766   666666666665543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.33  E-value=1.2e-06  Score=80.25  Aligned_cols=99  Identities=8%  Similarity=-0.020  Sum_probs=76.7

Q ss_pred             cHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhc-CCCCCchhhhhHHHHHHHHHHHHH
Q 008613           50 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG---RFSNALQKYLLAKKNL-QGIHSSEGRTLLLACSLNSMSCYL  125 (559)
Q Consensus        50 pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g---~y~eAi~~Y~kAL~l~-p~~~~~e~~~l~~~~~~nlA~~yl  125 (559)
                      ++++..+..+.+..++......+..++.|.++.+.+   ++.++|..+.+.++.. |..        ...|+|++|..|+
T Consensus        11 ~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~--------~rd~lY~LAv~~~   82 (152)
T 1pc2_A           11 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE--------QRDYVFYLAVGNY   82 (152)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH--------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc--------hHHHHHHHHHHHH
Confidence            444444444444444433345788999999999988   7779999999999976 311        3459999999999


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008613          126 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQ  156 (559)
Q Consensus       126 klg~y~eAi~~~~~AL~ldP~~~kal~~rG~  156 (559)
                      ++++|++|+++|+++|+++|+|..+...+-.
T Consensus        83 kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~  113 (152)
T 1pc2_A           83 RLKEYEKALKYVRGLLQTEPQNNQAKELERL  113 (152)
T ss_dssp             HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            9999999999999999999999887655443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.27  E-value=2.5e-05  Score=93.10  Aligned_cols=103  Identities=14%  Similarity=0.159  Sum_probs=74.4

Q ss_pred             HHHHHHhHH--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 008613           58 ARIDAQMNY--EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK  135 (559)
Q Consensus        58 ~~l~~~~~~--~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~  135 (559)
                      ..+++..++  .+.....|...|..+.+.|+|.+||+.|.++     ++++         .|.+++.|+.++|+|++|++
T Consensus      1090 ~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~s---------ay~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A         1090 GNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPS---------SYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChH---------HHHHHHHHHHHcCCHHHHHH
Confidence            344444443  2456788899999999999999999999876     3433         78888888888888888888


Q ss_pred             HHHHHHHcCCC---------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613          136 VGSEVLAYDAK---------------------------NVKALYRRGQAYKDIGRLEEAVSDLSNA  174 (559)
Q Consensus       136 ~~~~AL~ldP~---------------------------~~kal~~rG~A~~~lg~~eeAi~dlekA  174 (559)
                      +|..+++..++                           +...|++.|..+...|+|++|+..|.++
T Consensus      1156 yL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A         1156 YLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred             HHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence            88777655533                           2234566777777777777777777665

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.25  E-value=6.2e-06  Score=73.13  Aligned_cols=102  Identities=13%  Similarity=0.147  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcC-C-CCHHHHHHHHHHHHHc
Q 008613           87 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE---CIKVGSEVLAYD-A-KNVKALYRRGQAYKDI  161 (559)
Q Consensus        87 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~e---Ai~~~~~AL~ld-P-~~~kal~~rG~A~~~l  161 (559)
                      ...+.+.|.+.+...+..         ..+.+++|.|+.+..+..+   +|..++.+++.+ | ....++|.+|.+|+++
T Consensus        17 l~~~~~~y~~e~~~~~~s---------~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ykl   87 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGSVS---------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL   87 (126)
T ss_dssp             HHHHHHHHHHHHHHSCCC---------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccCCCc---------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Confidence            455667788777754433         3488999999999887776   999999999887 6 5779999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          162 GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       162 g~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                      |+|++|+..++.+|+++|+|..+......+.+++.+
T Consensus        88 g~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k  123 (126)
T 1nzn_A           88 KEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  123 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999988888887754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.24  E-value=8.3e-06  Score=84.67  Aligned_cols=133  Identities=5%  Similarity=-0.075  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA-----  145 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP-----  145 (559)
                      ...+..+|..|+..|+|++|+++|.+++.+.+....   ......++.+++.++...+++++|+..|.+++.+.+     
T Consensus        55 ~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  131 (434)
T 4b4t_Q           55 ETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK---SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV  131 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH---HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence            556888999999999999999999999998877643   222345677889999999999999999999997633     


Q ss_pred             -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHHhhcCCCCCcc
Q 008613          146 -KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP------DDGTIADVLRDAKEILMKEDGHHGPRG  206 (559)
Q Consensus       146 -~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P------~~~~a~~~L~~a~~~l~~~~~~~~~~~  206 (559)
                       ...+++.++|.+|...|+|++|+..+++++....      ....++..++.+...+++..++...+.
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  199 (434)
T 4b4t_Q          132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLT  199 (434)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence             3478999999999999999999999999988632      224566666777777666555443333

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.19  E-value=1.4e-05  Score=81.73  Aligned_cols=106  Identities=8%  Similarity=-0.035  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 008613           70 AAKMLKKQGNELYSEG--RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY----  143 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g--~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l----  143 (559)
                      ........+.+.+..|  +|.+|+..|.++....|...       ...+++|   |++++|+|++|...++.++++    
T Consensus       175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~-------~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~  244 (310)
T 3mv2_B          175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWK-------TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSV  244 (310)
T ss_dssp             HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH-------HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc-------cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccc
Confidence            3445555665566666  99999999999887655410       0124555   999999999999999988876    


Q ss_pred             ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008613          144 ------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV  187 (559)
Q Consensus       144 ------dP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~  187 (559)
                            +|+++.++.++..+...+|+  +|.+.++++..++|+++-+...
T Consensus       245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~  292 (310)
T 3mv2_B          245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH  292 (310)
T ss_dssp             TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred             cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence                  58999999999999999998  9999999999999999876653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.18  E-value=6.2e-05  Score=89.75  Aligned_cols=173  Identities=17%  Similarity=0.123  Sum_probs=110.3

Q ss_pred             hcCCHHHHHHHHHHh-hCCChHHHHHHHHHHHccCcH---HHHHHHH-HHHHHhHHhHHHHHHHH---------HHHHHH
Q 008613           16 KNMRPEDLKCAAEQL-THTPPEEVAEIGEKLANASPE---EIATMRA-RIDAQMNYEFNAAKMLK---------KQGNEL   81 (559)
Q Consensus        16 k~m~pedl~~a~e~l-~~~~pee~~~~~~~~~~~~pe---e~~aa~~-~l~~~~~~~~~~a~~lk---------~~Gn~~   81 (559)
                      ....||++-.+.+.. ....|.+...+.+++.- .+.   +...+.+ -+...++........+.         +.|..+
T Consensus       981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl-~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Ia 1059 (1630)
T 1xi4_A          981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVL-DNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIA 1059 (1630)
T ss_pred             cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHc-CCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHH
Confidence            556677766555443 45567777777777662 233   1111111 11112222222333333         358899


Q ss_pred             HHcCCHHHHHHHHHHHHHhcCCCC-------C-ch-----hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613           82 YSEGRFSNALQKYLLAKKNLQGIH-------S-SE-----GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  148 (559)
Q Consensus        82 ~k~g~y~eAi~~Y~kAL~l~p~~~-------~-~e-----~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~  148 (559)
                      ...|.|++|+..|+++........       . .+     .+-....+|+++|.++...|+|++||..|.++     +++
T Consensus      1060 i~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~ 1134 (1630)
T 1xi4_A         1060 ISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDP 1134 (1630)
T ss_pred             HhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CCh
Confidence            999999999999887642211100       0 00     01113468999999999999999999999776     899


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                      .+|++.+.++..+|+|++|++.|..+.+..++. .+...++.+..++
T Consensus      1135 say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl 1180 (1630)
T 1xi4_A         1135 SSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKT 1180 (1630)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhh
Confidence            999999999999999999999999999888442 2233344444333

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.17  E-value=7e-06  Score=87.76  Aligned_cols=108  Identities=8%  Similarity=-0.007  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcC
Q 008613           72 KMLKKQGNELYSEG---RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT----KQYDECIKVGSEVLAYD  144 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g---~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl----g~y~eAi~~~~~AL~ld  144 (559)
                      ..+..+|.+|...|   ++.+|+..|.++++..+...         ..++++|.+|...    +++++|+..|++++   
T Consensus       177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a---------~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---  244 (452)
T 3e4b_A          177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA---------QRVDSVARVLGDATLGTPDEKTAQALLEKIA---  244 (452)
T ss_dssp             THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH---------HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---
T ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH---------HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---
Confidence            46788999999999   99999999999999877663         2669999999877    79999999999998   


Q ss_pred             CCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613          145 AKNVKALYRRGQA-Y--KDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  193 (559)
Q Consensus       145 P~~~kal~~rG~A-~--~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~  193 (559)
                      |+++.+++++|.+ |  ...+++++|+.+|+++++.  +++.+...|+.+..
T Consensus       245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY  294 (452)
T ss_dssp             GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            9999999999999 4  5789999999999999865  58889999998876

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.16  E-value=3.9e-06  Score=74.89  Aligned_cols=93  Identities=14%  Similarity=0.002  Sum_probs=82.7

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----
Q 008613           85 GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD----  160 (559)
Q Consensus        85 g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~----  160 (559)
                      +++++|+..|.++.+..  ++.         +.  +|.+|...+.+++|+..|+++.+.  .++.+++++|.+|..    
T Consensus         9 ~d~~~A~~~~~~aa~~g--~~~---------a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~   73 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN--EMF---------GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYV   73 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTT---------HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSS
T ss_pred             cCHHHHHHHHHHHHcCC--CHh---------hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCC
Confidence            56899999999999875  332         44  999999999999999999999987  789999999999999    


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          161 IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       161 lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                      .+++++|+.+|+++.+.  .++.+...|+.+...
T Consensus        74 ~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           74 KKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            89999999999999987  778888899888766

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.03  E-value=3.8e-05  Score=80.19  Aligned_cols=68  Identities=16%  Similarity=0.102  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 008613          115 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  183 (559)
Q Consensus       115 ~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~  183 (559)
                      .+|.-++.++...|++++|+..+++++.++| ++-+|..+|.++...|++++|++.|++|+.++|..+.
T Consensus       278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          278 IIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            4777788888888999999999999999997 4788899999999999999999999999999998753

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.99  E-value=1.2e-05  Score=85.95  Aligned_cols=105  Identities=16%  Similarity=0.132  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------
Q 008613           72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA------  145 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP------  145 (559)
                      ..+...|+.++..|+|++|+.+|.++        .         -|.+++.|+.++|+|++|++.|.++.  +|      
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~---------n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v  183 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------S---------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEV  183 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------T---------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------h---------hHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHH
Confidence            48888999999999999999999876        1         47789999999999999999999882  33      


Q ss_pred             ---------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          146 ---------------------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       146 ---------------------~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                                           .++.-+..+...|...|+|++|+..|++++.+++.+..++..|+.+..+.
T Consensus       184 ~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          184 CFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             HHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence                                 12222333446788999999999999999999999999999888775444

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.95  E-value=2.5e-05  Score=65.40  Aligned_cols=68  Identities=13%  Similarity=-0.015  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613           71 AKMLKKQGNELYSEGR---FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  147 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~---y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~  147 (559)
                      +..+...|.+++..++   .++|..+|.++|.++|.++.         +++.+|..+++.|+|++||..++++++.+|..
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r---------A~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA---------ALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            7788889999986666   79999999999999999965         89999999999999999999999999999984

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.94  E-value=1.7e-05  Score=79.98  Aligned_cols=87  Identities=10%  Similarity=-0.055  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH
Q 008613           87 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-----KQYDECIKVGSEVLAYDAKN-VKALYRRGQAYKD  160 (559)
Q Consensus        87 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl-----g~y~eAi~~~~~AL~ldP~~-~kal~~rG~A~~~  160 (559)
                      ..+|...+.+||+++|...       ...+|.-+|..|.+.     |+.++|..+|++||+++|+. ...++..|..|+.
T Consensus       179 l~~A~a~lerAleLDP~~~-------~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~  251 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQ-------EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI  251 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHH-------HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHhCCCcc-------cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence            4778899999999988842       245999999999995     99999999999999999975 9999999999988


Q ss_pred             c-CCHHHHHHHHHHHHHhCCC
Q 008613          161 I-GRLEEAVSDLSNAHEVSPD  180 (559)
Q Consensus       161 l-g~~eeAi~dlekAl~l~P~  180 (559)
                      . +++++|...+++++..+|+
T Consensus       252 ~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          252 PLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             TTTCHHHHHHHHHHHHHCCGG
T ss_pred             hcCCHHHHHHHHHHHHcCCCC
Confidence            5 9999999999999998876

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.79  E-value=0.00012  Score=78.18  Aligned_cols=93  Identities=8%  Similarity=-0.032  Sum_probs=72.7

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY---  143 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l---  143 (559)
                      .+..+..+.++|..|...|+|++|+.+|.++|.+....-. +.+...+..++|+|.+|..+|+|++|+..|.+|+++   
T Consensus       325 h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg-~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~  403 (429)
T 3qwp_A          325 NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP-GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV  403 (429)
T ss_dssp             SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC-SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            5667899999999999999999999999999977532110 123447889999999999999999999999999975   


Q ss_pred             --CCCCHH---HHHHHHHHHHH
Q 008613          144 --DAKNVK---ALYRRGQAYKD  160 (559)
Q Consensus       144 --dP~~~k---al~~rG~A~~~  160 (559)
                        .|+++.   .+.+++.++..
T Consensus       404 ~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          404 THGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             HTCTTSHHHHHHHHHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHHHHH
Confidence              566653   44555555543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.79  E-value=0.00015  Score=64.57  Aligned_cols=85  Identities=12%  Similarity=0.139  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613          114 LACSLNSMSCYLKTKQ---YDECIKVGSEVLAYDAK-NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR  189 (559)
Q Consensus       114 ~~~~~nlA~~ylklg~---y~eAi~~~~~AL~ldP~-~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~  189 (559)
                      ..+.++.|.|+.+..+   ..++|..++..++.+|. ...++|.+|.++.++|+|++|..+++.+|+++|+|..+.....
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~  119 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  119 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            4578899999998875   45799999999999995 5789999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhh
Q 008613          190 DAKEILMKE  198 (559)
Q Consensus       190 ~a~~~l~~~  198 (559)
                      .+.+++.+.
T Consensus       120 ~Ie~ki~kd  128 (134)
T 3o48_A          120 MVEDKIQKE  128 (134)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            888888653

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.79  E-value=0.00023  Score=72.69  Aligned_cols=136  Identities=9%  Similarity=-0.108  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHhHHh--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHH--HHHcC
Q 008613           53 IATMRARIDAQMNYE--FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC--YLKTK  128 (559)
Q Consensus        53 ~~aa~~~l~~~~~~~--~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~--ylklg  128 (559)
                      +..+..-++..+...  ....+.+...+.++++.|+++.|.+.+.+..+..|+....     ...++.+++.+  .+..|
T Consensus       116 ~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~-----~d~~l~~Laea~v~l~~g  190 (310)
T 3mv2_B          116 LDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSG-----DNEMILNLAESYIKFATN  190 (310)
T ss_dssp             HHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHH-----HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccccc-----chHHHHHHHHHHHHHHhC
Confidence            334444444433333  2567778888999999999999999999998886620000     01144555544  55556


Q ss_pred             --CHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHH
Q 008613          129 --QYDECIKVGSEVLAYDAK--NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV----------SPDDGTIADVLRDAKEI  194 (559)
Q Consensus       129 --~y~eAi~~~~~AL~ldP~--~~kal~~rG~A~~~lg~~eeAi~dlekAl~l----------~P~~~~a~~~L~~a~~~  194 (559)
                        ++.+|+..|++++...|+  ....+++   ++..+|+|++|..+++..+++          +|+++.+..++..+...
T Consensus       191 ~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~  267 (310)
T 3mv2_B          191 KETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALM  267 (310)
T ss_dssp             CSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHH
Confidence              999999999999988887  3445555   899999999999999988877          48898888766656555


Q ss_pred             HH
Q 008613          195 LM  196 (559)
Q Consensus       195 l~  196 (559)
                      ++
T Consensus       268 lg  269 (310)
T 3mv2_B          268 QG  269 (310)
T ss_dssp             TT
T ss_pred             hC
Confidence            54

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.75  E-value=0.00012  Score=78.25  Aligned_cols=84  Identities=10%  Similarity=-0.089  Sum_probs=68.5

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 008613           66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--  143 (559)
Q Consensus        66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~l--  143 (559)
                      ..+..+..+.++|.+|...|+|++|+.+|.++|.+....-. +.+...+..|+|+|.+|..+|+|++|+..|.+|+++  
T Consensus       335 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG-~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~  413 (433)
T 3qww_A          335 SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYP-VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME  413 (433)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC-SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            45677999999999999999999999999999977532110 123347789999999999999999999999999975  


Q ss_pred             ---CCCCHHH
Q 008613          144 ---DAKNVKA  150 (559)
Q Consensus       144 ---dP~~~ka  150 (559)
                         .|+++..
T Consensus       414 ~~lG~~Hp~~  423 (433)
T 3qww_A          414 VAHGKDHPYI  423 (433)
T ss_dssp             HHTCTTCHHH
T ss_pred             HHcCCCChHH
Confidence               5666543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.70  E-value=0.00041  Score=64.13  Aligned_cols=119  Identities=12%  Similarity=0.087  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC-
Q 008613           72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD---AKN-  147 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld---P~~-  147 (559)
                      -.+++....++..+.|+.|+-++..++.+...+++.-.......+++.+|.+++..++|..|+..|++||.+.   +++ 
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3467788899999999999999999888765554322244566688999999999999999999999997541   111 


Q ss_pred             ---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613          148 ---------------------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  191 (559)
Q Consensus       148 ---------------------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a  191 (559)
                                           .+..|+.+.||..++++++|+..++..-.. -..+.+.-.|+.+
T Consensus       101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakL  164 (167)
T 3ffl_A          101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANL  164 (167)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHH
T ss_pred             CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHH
Confidence                                 268899999999999999999998754221 1345555555543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.66  E-value=0.00044  Score=62.30  Aligned_cols=85  Identities=12%  Similarity=0.139  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613          114 LACSLNSMSCYLKTKQ---YDECIKVGSEVLAYDAK-NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR  189 (559)
Q Consensus       114 ~~~~~nlA~~ylklg~---y~eAi~~~~~AL~ldP~-~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~  189 (559)
                      ..+.++.|.|+.+..+   ..++|..++..++.+|. ...++|.+|.+++++|+|++|..+++.+|+++|+|..+.....
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  118 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            4488899999998875   45799999999998885 5789999999999999999999999999999999999999888


Q ss_pred             HHHHHHHhh
Q 008613          190 DAKEILMKE  198 (559)
Q Consensus       190 ~a~~~l~~~  198 (559)
                      .+.+++.+.
T Consensus       119 ~Ie~~i~kd  127 (144)
T 1y8m_A          119 MVEDKIQKE  127 (144)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            888888654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.65  E-value=9.8e-05  Score=77.08  Aligned_cols=128  Identities=6%  Similarity=-0.103  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCH-------HHHHH-HHH--
Q 008613           72 KMLKKQGNELYSEG---RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY-------DECIK-VGS--  138 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g---~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y-------~eAi~-~~~--  138 (559)
                      -.++.+|..++.++   .+.+|+.+|.+|++++|.++.         +|..++.||.-...+       ..++. .+.  
T Consensus       197 ydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~---------A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~  267 (372)
T 3ly7_A          197 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY---------ARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI  267 (372)
T ss_dssp             HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence            33444556555543   358999999999999999854         677777777532211       11222 111  


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          139 EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       139 ~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      .++.++|..+.+|..++.++...|++++|+..+++|+.++|+ ...+..++.+....++.+.+...+.+++
T Consensus       268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Al  337 (372)
T 3ly7_A          268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAF  337 (372)
T ss_dssp             HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            233678999999999999999999999999999999999975 5667788888888777665554444444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.60  E-value=0.00026  Score=62.62  Aligned_cols=101  Identities=8%  Similarity=-0.041  Sum_probs=75.9

Q ss_pred             cHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH
Q 008613           50 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN---ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK  126 (559)
Q Consensus        50 pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~e---Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk  126 (559)
                      ++++..+..+.+..+.......+..++.+.++.+..+..+   +|..+...+...  .|     ...-.|+|.+|..|++
T Consensus        14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p-----~~~Rd~lY~LAvg~yk   86 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SK-----EEQRDYVFYLAVGNYR   86 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CH-----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--Cc-----chHHHHHHHHHHHHHH
Confidence            4444444444444444333457888899999999888877   899998877743  11     1244599999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008613          127 TKQYDECIKVGSEVLAYDAKNVKALYRRGQA  157 (559)
Q Consensus       127 lg~y~eAi~~~~~AL~ldP~~~kal~~rG~A  157 (559)
                      +|+|.+|+++++.+|+++|+|..+...+..+
T Consensus        87 lg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           87 LKEYEKALKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999998886655444

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.54  E-value=0.00086  Score=59.68  Aligned_cols=101  Identities=8%  Similarity=-0.001  Sum_probs=74.9

Q ss_pred             CcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHH
Q 008613           49 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRF---SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL  125 (559)
Q Consensus        49 ~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y---~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~yl  125 (559)
                      +++++..+.++.+.+. .....++..++.+.++.+..+.   .++|..+...++..|..        .-.|+|.+|..|+
T Consensus        19 ~~eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~--------~Rd~LYyLAvg~y   89 (134)
T 3o48_A           19 YPQQLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------RRECLYYLTIGCY   89 (134)
T ss_dssp             CHHHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--------HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch--------hHHHHHHHHHHHH
Confidence            3444444444454443 2223367788888888887765   46899999988865432        3459999999999


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008613          126 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY  158 (559)
Q Consensus       126 klg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~  158 (559)
                      ++|+|++|.++++.+|+++|+|..+...+..+-
T Consensus        90 klgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie  122 (134)
T 3o48_A           90 KLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE  122 (134)
T ss_dssp             HHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            999999999999999999999988766555443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.43  E-value=0.0014  Score=58.97  Aligned_cols=99  Identities=8%  Similarity=0.032  Sum_probs=73.2

Q ss_pred             cHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH
Q 008613           50 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS---NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK  126 (559)
Q Consensus        50 pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~---eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk  126 (559)
                      |+++..+..+.+.+.. .....+..++.+.++.+..+..   ++|..+...+...|..        .-.|+|.+|..|++
T Consensus        19 ~eeL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~--------~RdcLYyLAvg~yk   89 (144)
T 1y8m_A           19 PQQLEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------RRECLYYLTIGCYK   89 (144)
T ss_dssp             HHHHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST--------HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc--------hhHHHHHHHHHHHH
Confidence            4444444444443311 1234777888889999888765   6899999988865543        34599999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008613          127 TKQYDECIKVGSEVLAYDAKNVKALYRRGQA  157 (559)
Q Consensus       127 lg~y~eAi~~~~~AL~ldP~~~kal~~rG~A  157 (559)
                      +|+|.+|.++++.+|+++|+|..+...+..+
T Consensus        90 l~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I  120 (144)
T 1y8m_A           90 LGEYSMAKRYVDTLFEHERNNKQVGALKSMV  120 (144)
T ss_dssp             TTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            9999999999999999999998876554443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.19  E-value=0.0061  Score=63.91  Aligned_cols=107  Identities=12%  Similarity=0.001  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc-------------hhhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS-------------EGRTLLLACSLNSMSCYLKTKQYDECIKV  136 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~-------------e~~~l~~~~~~nlA~~ylklg~y~eAi~~  136 (559)
                      ..+.+...|......|+..+|+..|.+|+.+.....-.             ...+.+..++..++.+++..|++.+++..
T Consensus       114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~  193 (388)
T 2ff4_A          114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE  193 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            34566677777788899999999999999987543211             23455667778889999999999999999


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613          137 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE  176 (559)
Q Consensus       137 ~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~  176 (559)
                      +.+++..+|-+..+|..+-.+|...|+..+|+..|+++..
T Consensus       194 l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          194 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988755

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.90  E-value=0.00055  Score=73.19  Aligned_cols=125  Identities=10%  Similarity=0.088  Sum_probs=95.1

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHH-----------------------HHHHHHH
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLAC-----------------------SLNSMSC  123 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~-----------------------~~nlA~~  123 (559)
                      ....+..+..++.++++.|+|++|++.|.++..  +   .  .......+                       +..+..+
T Consensus       144 ~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~--~---~--~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~  216 (449)
T 1b89_A          144 LYNNVSNFGRLASTLVHLGEYQAAVDGARKANS--T---R--TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINY  216 (449)
T ss_dssp             HHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTC--H---H--HHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCC--c---h--hHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHH
Confidence            333567788999999999999999999999932  1   0  00001111                       2235578


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHH
Q 008613          124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK--DIGRLEEAVSDLSNAHEVSP-----DDGTIADVLRDAKEILM  196 (559)
Q Consensus       124 ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~--~lg~~eeAi~dlekAl~l~P-----~~~~a~~~L~~a~~~l~  196 (559)
                      |.+.|+|++|+..+++++.+++.+...+..+|.+|.  ..++..++++.|...+.+.|     .+...|..+..+.....
T Consensus       217 Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~  296 (449)
T 1b89_A          217 YQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYE  296 (449)
T ss_dssp             HHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999998885  55678889998887777776     66677887777776654


Q ss_pred             hh
Q 008613          197 KE  198 (559)
Q Consensus       197 ~~  198 (559)
                      +.
T Consensus       297 e~  298 (449)
T 1b89_A          297 EY  298 (449)
T ss_dssp             CH
T ss_pred             hH
Confidence            43

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.90  E-value=0.012  Score=53.52  Aligned_cols=112  Identities=11%  Similarity=-0.087  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008613           71 AKMLKKQGNELYSEGRF------SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD  144 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y------~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld  144 (559)
                      .+.|...-..+-+.|+.      ++-++.|.+|+...|... ....+-++.+|.+.|.. ...++.++|.+.|..++.+.
T Consensus        13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh
Confidence            55666666666666877      888999999999988764 44556677888888855 67899999999999999998


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008613          145 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI  184 (559)
Q Consensus       145 P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a  184 (559)
                      ...++.|...|.--...|+...|.+.+.+++.+.|...+.
T Consensus        91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A           91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence            8889999999998999999999999999999999987553

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.85  E-value=0.013  Score=66.09  Aligned_cols=119  Identities=8%  Similarity=-0.078  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDAKNV  148 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg-~y~eAi~~~~~AL~ldP~~~  148 (559)
                      ....|....+...+.+..+.|...|.+|++..|....        .+|...+....+.+ +++.|...|+.+|+..|+++
T Consensus       433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~--------~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~  504 (679)
T 4e6h_A          433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP--------DIYLENAYIEYHISKDTKTACKVLELGLKYFATDG  504 (679)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT--------HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh--------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCch
Confidence            3456777888888889999999999999987332221        25666666666665 59999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHH
Q 008613          149 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD---DGTIADVLRDAKEILM  196 (559)
Q Consensus       149 kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~---~~~a~~~L~~a~~~l~  196 (559)
                      ..+...+......|+.+.|...|++++...|+   ...++......+...+
T Consensus       505 ~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G  555 (679)
T 4e6h_A          505 EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVG  555 (679)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Confidence            99888888888899999999999999999884   4456665555544443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.73  E-value=0.0071  Score=55.85  Aligned_cols=88  Identities=16%  Similarity=0.261  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchh----------------hhhHHHHHHHHHHHHHHcCCHHHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG----------------RTLLLACSLNSMSCYLKTKQYDEC  133 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~----------------~~l~~~~~~nlA~~ylklg~y~eA  133 (559)
                      .++.+...|+.+|.+++|..|+..|.+||.+....+....                ..--..+.|.++.||.+++++++|
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            4778889999999999999999999999987664321110                001235889999999999999999


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHH
Q 008613          134 IKVGSEVLAYDAKNVKALYRRGQAY  158 (559)
Q Consensus       134 i~~~~~AL~ldP~~~kal~~rG~A~  158 (559)
                      |...+.+- ..-..++....+|..|
T Consensus       142 i~~Le~Ip-~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          142 IAILDGIP-SRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred             HHHHhcCC-chhcCHHHHHHHHHHh
Confidence            99765431 2335677777777765

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.55  E-value=0.007  Score=61.04  Aligned_cols=115  Identities=7%  Similarity=-0.022  Sum_probs=90.6

Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHH------ccCcH------HHHHHHHHHHHHhHHhHH--HHHHHHHHHHHHHHc----
Q 008613           23 LKCAAEQLTHTPPEEVAEIGEKLA------NASPE------EIATMRARIDAQMNYEFN--AAKMLKKQGNELYSE----   84 (559)
Q Consensus        23 l~~a~e~l~~~~pee~~~~~~~~~------~~~pe------e~~aa~~~l~~~~~~~~~--~a~~lk~~Gn~~~k~----   84 (559)
                      ..+..+.+.+.+++++..+.|...      .....      .+..+...+++.+...+.  ....+.-+|..|...    
T Consensus       137 ~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~  216 (301)
T 3u64_A          137 EQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESF  216 (301)
T ss_dssp             HHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTT
T ss_pred             hhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCcc
Confidence            455667788889999999988522      22212      334555666777766555  566899999999995    


Q ss_pred             -CCHHHHHHHHHHHHHhcCCC-CCchhhhhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCC
Q 008613           85 -GRFSNALQKYLLAKKNLQGI-HSSEGRTLLLACSLNSMSCYLK-TKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        85 -g~y~eAi~~Y~kAL~l~p~~-~~~e~~~l~~~~~~nlA~~ylk-lg~y~eAi~~~~~AL~ldP~  146 (559)
                       |+.++|..+|++||+++|+. ..         .++..|..|+. .++++++.+.+++|+..+|.
T Consensus       217 gGd~ekA~~~ferAL~LnP~~~id---------~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          217 GGGMEKAHTAFEHLTRYCSAHDPD---------HHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             TCCHHHHHHHHHHHHHHCCTTCSH---------HHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCch---------HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence             99999999999999999975 55         78888888887 49999999999999999887

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.45  E-value=0.0085  Score=67.53  Aligned_cols=149  Identities=9%  Similarity=-0.033  Sum_probs=105.9

Q ss_pred             HHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--------CCCCc-----hhhhhHHHHHHHHHHHHHH
Q 008613           60 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ--------GIHSS-----EGRTLLLACSLNSMSCYLK  126 (559)
Q Consensus        60 l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p--------~~~~~-----e~~~l~~~~~~nlA~~ylk  126 (559)
                      +...+...+.....+...+......|++++|...|.+++...+        ..|..     ....-...+|...+.+..+
T Consensus       367 l~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR  446 (679)
T 4e6h_A          367 LKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKR  446 (679)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHH
Confidence            3333444555566678889999999999999999999998642        11110     0011234578888888889


Q ss_pred             cCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCC
Q 008613          127 TKQYDECIKVGSEVLAY-DAKNVKALYRRGQAYKDIGR-LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP  204 (559)
Q Consensus       127 lg~y~eAi~~~~~AL~l-dP~~~kal~~rG~A~~~lg~-~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~  204 (559)
                      .+..+.|...|.+|++. .+...+.|...+......++ ++.|...|+++++..|+++..+..+......+++...++.-
T Consensus       447 ~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~l  526 (679)
T 4e6h_A          447 IQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSL  526 (679)
T ss_dssp             HHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence            99999999999999988 44556777766766666654 89999999999999999999886666655555444333333


Q ss_pred             ccch
Q 008613          205 RGLL  208 (559)
Q Consensus       205 ~~~~  208 (559)
                      ++++
T Consensus       527 fera  530 (679)
T 4e6h_A          527 FESS  530 (679)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.42  E-value=0.7  Score=48.42  Aligned_cols=100  Identities=13%  Similarity=0.049  Sum_probs=82.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC----H
Q 008613           76 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD---AKN----V  148 (559)
Q Consensus        76 ~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld---P~~----~  148 (559)
                      .+|..|+..|+|.+|+..|.+.++.+....+   ..+...+|.....+|..++++.++...++++....   +.+    +
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd---~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a  180 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDD---KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG  180 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC---THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence            6899999999999999999999988766433   56777889999999999999999999999987643   122    3


Q ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC
Q 008613          149 KALYRRGQAYK-DIGRLEEAVSDLSNAHEVS  178 (559)
Q Consensus       149 kal~~rG~A~~-~lg~~eeAi~dlekAl~l~  178 (559)
                      .....-|..|. ..++|..|..+|-.++.-.
T Consensus       181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          181 ALDLQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence            45666788889 8999999999999987543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.25  E-value=0.41  Score=51.47  Aligned_cols=121  Identities=11%  Similarity=-0.048  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch-----h--------------------------hhhHHHH
Q 008613           68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE-----G--------------------------RTLLLAC  116 (559)
Q Consensus        68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e-----~--------------------------~~l~~~~  116 (559)
                      +.....|...+..+...|+.++|...|.+|+.. |....-.     .                          ......+
T Consensus       210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l  288 (493)
T 2uy1_A          210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLL  288 (493)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHH
Confidence            344788999999999999999999999999999 7653200     0                          0001245


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008613          117 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-RLEEAVSDLSNAHEVSPDDGTIADVLRD  190 (559)
Q Consensus       117 ~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg-~~eeAi~dlekAl~l~P~~~~a~~~L~~  190 (559)
                      |...+..+.+.+.++.|...|.+| +..+.....|...+..-...+ +++.|...|+++++..|+++..+.....
T Consensus       289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid  362 (493)
T 2uy1_A          289 RINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFL  362 (493)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            666666666788899999999999 433335666666666666666 5999999999999999998876554433

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.88  E-value=0.16  Score=53.66  Aligned_cols=103  Identities=11%  Similarity=-0.085  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD---AKN  147 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld---P~~  147 (559)
                      ...+..+|..|++.|+|++|++.|.++...+.....      +..++.+...+++..++|..+...+.++..+.   ++.
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~------kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~  204 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA------KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDW  204 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCH
Confidence            445778999999999999999999999988766543      56788899999999999999999999987652   222


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 008613          148 ---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  179 (559)
Q Consensus       148 ---~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P  179 (559)
                         .+.....|..+...++|.+|...|-.++.-..
T Consensus       205 ~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          205 ERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence               24556678888899999999999988877543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.81  E-value=0.28  Score=53.13  Aligned_cols=82  Identities=9%  Similarity=-0.088  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613          114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  193 (559)
Q Consensus       114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~  193 (559)
                      ..|+.++|.+..-...+..|..+|.+|+.+.|++...|..+|..+...+++-+|+-+|-+++....-.+.+..+|..+..
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            34777889888888999999999999999999999999999999999999999999999999987778889988888766


Q ss_pred             HH
Q 008613          194 IL  195 (559)
Q Consensus       194 ~l  195 (559)
                      ..
T Consensus       232 ~~  233 (497)
T 1ya0_A          232 KA  233 (497)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=93.25  E-value=0.61  Score=43.23  Aligned_cols=102  Identities=19%  Similarity=0.162  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--c-----
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA--Y-----  143 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~--l-----  143 (559)
                      .+.....+..++-.|.|..|+-.+.+.      +        .+...+-.+.||.++++|..|+...+..|+  +     
T Consensus        33 ~eY~lL~~I~LyyngEY~R~Lf~L~~l------N--------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~   98 (242)
T 3kae_A           33 PEYRMLMSIVLYLNGEYTRALFHLHKL------N--------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPD   98 (242)
T ss_dssp             -CTHHHHHHHHHHTTCHHHHHHHHHTC------C--------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCC
T ss_pred             hHHHhhhhhhhhhcchHhHHHHHHHhc------c--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc
Confidence            344556788889999998888765431      1        133566788999999999999999999993  2     


Q ss_pred             ----------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008613          144 ----------DAKNVK-ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD  186 (559)
Q Consensus       144 ----------dP~~~k-al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~  186 (559)
                                ||.+-+ .+...|..+...|+-+||+.+|.....++|=.+.+..
T Consensus        99 ~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEn  152 (242)
T 3kae_A           99 VDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVEN  152 (242)
T ss_dssp             CCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             cccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHH
Confidence                      344444 4556788899999999999999999999987665543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=92.39  E-value=0.34  Score=55.04  Aligned_cols=59  Identities=10%  Similarity=0.117  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613          116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA  174 (559)
Q Consensus       116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekA  174 (559)
                      ++.--+..++..|+|+-|+..+.+|+.+-|.....|++++.+|..+|+|+.|+-.+..+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            44445677778899999999999999999999999999999999999999999776644

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.05  E-value=2.8  Score=44.41  Aligned_cols=105  Identities=12%  Similarity=0.060  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCC
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA---YDAK  146 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~---ldP~  146 (559)
                      .+.....++..|+..|+|.+|...+.....-.-..-   ....+..++......|+..++|..|...++++..   -.+.
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~---~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~  212 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSM---EMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK  212 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSS---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC
Confidence            355567789999999999999999888754322221   2455677888889999999999999999998742   2233


Q ss_pred             C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613          147 N----VKALYRRGQAYKDIGRLEEAVSDLSNAHEV  177 (559)
Q Consensus       147 ~----~kal~~rG~A~~~lg~~eeAi~dlekAl~l  177 (559)
                      .    ...+...|..+..-++|.+|..+|..++..
T Consensus       213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          213 YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            3    356777889999999999999999998864

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=91.37  E-value=0.53  Score=53.42  Aligned_cols=61  Identities=18%  Similarity=0.225  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV  140 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~A  140 (559)
                      ...|..++..+..+|+|+-|+.+-++|+.+.|.+-.         +|+.|+.||.++|+|+.|+-..+.+
T Consensus       337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~---------tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFE---------SWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH---------HHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhH---------HHHHHHHHHHHhccHHHHHHHHhcC
Confidence            457888999999999999999999999999998854         9999999999999999999654443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=91.14  E-value=1.9  Score=46.40  Aligned_cols=111  Identities=8%  Similarity=0.029  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA-KNVK  149 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP-~~~k  149 (559)
                      ...+...-..|.+.|++++|+.+|.+..... -.|+       ...|..+-.+|.+.|++++|.+.+.+..+..- -+..
T Consensus       105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd-------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~  176 (501)
T 4g26_A          105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFG-IQPR-------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP  176 (501)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCc-------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence            4456667788999999999999999877641 1222       34777888899999999999999999887542 3677


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Q 008613          150 ALYRRGQAYKDIGRLEEAVSDLSNAHEV--SPDDGTIADVLRD  190 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~dlekAl~l--~P~~~~a~~~L~~  190 (559)
                      .|..+-.+|...|++++|...|++..+.  .|+. ..+..|..
T Consensus       177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~-~T~~~l~~  218 (501)
T 4g26_A          177 ELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK-STFDMIEE  218 (501)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCH-HHHHHHHH
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCH-HHHHHHHH
Confidence            8889999999999999999999987664  4554 34444443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.05  E-value=0.95  Score=48.91  Aligned_cols=80  Identities=13%  Similarity=-0.119  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008613           73 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  152 (559)
Q Consensus        73 ~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~  152 (559)
                      -+..+|+...-+..+..|..+|.+|+.+.|....         .|+.+|.++...+++-+|+-+|.+++-....++.+.-
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~---------~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~  224 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ---------PYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAST  224 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH---------HHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCc---------hHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHH
Confidence            4667899988899999999999999999999876         9999999999999999999999999988888999999


Q ss_pred             HHHHHHHHc
Q 008613          153 RRGQAYKDI  161 (559)
Q Consensus       153 ~rG~A~~~l  161 (559)
                      ++...+...
T Consensus       225 nL~~~f~~~  233 (497)
T 1ya0_A          225 NLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998888653

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=90.90  E-value=1.6  Score=46.78  Aligned_cols=112  Identities=8%  Similarity=-0.075  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHH
Q 008613           72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg-~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      ..|...+..+.+.+.++.|...|.+| . .|.. .       ..+|...|......+ +++.|...|+.+++..|+.+..
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~-~-------~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~  356 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL-G-NEGV-G-------PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL  356 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCC-C-------HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCC-C-------hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence            45666777777788899999999999 3 3332 1       225556666666666 6999999999999999999988


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                      +...+.-...+|+.+.|...|+++    +....++..........+.
T Consensus       357 ~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~  399 (493)
T 2uy1_A          357 KEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGS  399 (493)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC
Confidence            777777778899999999999987    3456666666655555443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.12  E-value=3.2  Score=43.03  Aligned_cols=63  Identities=8%  Similarity=0.004  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA  142 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~  142 (559)
                      ...+......++..|+|.+|+..+.+++..+|.+..         +|..+..+|...|+..+|++.|.++.+
T Consensus       171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~---------~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREP---------LWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445666788899999999999999999999888754         899999999999999999999988754

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=90.09  E-value=1.2  Score=44.02  Aligned_cols=69  Identities=17%  Similarity=0.074  Sum_probs=61.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613          123 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  191 (559)
Q Consensus       123 ~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a  191 (559)
                      -+++.+++++++..+...|+-+|.+++....+-+.|+-.|+|+.|..-++-+.+++|+.......+..+
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l   74 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL   74 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999986655444443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=89.73  E-value=5.3  Score=44.19  Aligned_cols=29  Identities=17%  Similarity=0.190  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAK   98 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL   98 (559)
                      ....|+..|..+.+.++++.|+.+|.++-
T Consensus       680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~  708 (814)
T 3mkq_A          680 AEMKWRALGDASLQRFNFKLAIEAFTNAH  708 (814)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence            36789999999999999999999999863

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=89.66  E-value=2.4  Score=42.04  Aligned_cols=63  Identities=13%  Similarity=0.064  Sum_probs=54.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           79 NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        79 n~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      ..+++.|+.++|+......|+-.|.+..         ....+-..++-.|+|+.|+.-+..+.+++|.....
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~---------~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDAS---------LRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            4678899999999999999999999865         66666777788899999999999999999998643

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=88.04  E-value=7.9  Score=41.45  Aligned_cols=96  Identities=9%  Similarity=0.070  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Q 008613           87 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-AKNVKALYRRGQAYKDIGRLE  165 (559)
Q Consensus        87 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ld-P~~~kal~~rG~A~~~lg~~e  165 (559)
                      +++|.+.|.+-... .-.|+       ...|..+-.+|.+.|++++|+..+.+..+.. .-+...|..+=.+|...|+++
T Consensus        86 l~~A~~lf~~M~~~-G~~Pd-------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~  157 (501)
T 4g26_A           86 LSRGFDIFKQMIVD-KVVPN-------EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAD  157 (501)
T ss_dssp             HHHHHHHHHHHHHT-TCCCC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHh-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHH
Confidence            45566666554432 11122       3477888899999999999999999988753 237788888999999999999


Q ss_pred             HHHHHHHHHHHh--CCCCHHHHHHHHHH
Q 008613          166 EAVSDLSNAHEV--SPDDGTIADVLRDA  191 (559)
Q Consensus       166 eAi~dlekAl~l--~P~~~~a~~~L~~a  191 (559)
                      +|...|++..+.  .|+. ..+..|-.+
T Consensus       158 ~A~~l~~~M~~~G~~Pd~-~ty~~Li~~  184 (501)
T 4g26_A          158 KAYEVDAHMVESEVVPEE-PELAALLKV  184 (501)
T ss_dssp             HHHHHHHHHHHTTCCCCH-HHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCH-HHHHHHHHH
Confidence            999999988764  4543 344444333

>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}

Probab=87.81  E-value=0.55  Score=35.88  Aligned_cols=20  Identities=15%  Similarity=0.355  Sum_probs=16.7

Q ss_pred             HHHhcCCCHHHHHHHHHHHh
Q 008613          451 QMRNQMNDPAMKQMFSSMVK  470 (559)
Q Consensus       451 ~m~~~m~~p~~~~m~~~mmk  470 (559)
                      .+.+.|+||.+++.+..++.
T Consensus        36 ~~~~~~~dP~v~~~~~~L~~   55 (62)
T 2lnm_A           36 NIMKYQNDKEVMDVFNKISQ   55 (62)
T ss_dssp             GHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhChHHHHHHHHHHH
Confidence            47778999999999888875

>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=87.65  E-value=0.27  Score=38.80  Aligned_cols=20  Identities=10%  Similarity=0.463  Sum_probs=15.2

Q ss_pred             HHHhcCCCHHHHHHHHHHHh
Q 008613          451 QMRNQMNDPAMKQMFSSMVK  470 (559)
Q Consensus       451 ~m~~~m~~p~~~~m~~~mmk  470 (559)
                      .+.+.|+||.+++++..++.
T Consensus        44 ~~~k~~~nP~v~~~i~kl~~   63 (71)
T 2llw_A           44 ALQEHMKNPEVFKKIQTLIA   63 (71)
T ss_dssp             HHHHHHHSHHHHHHHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHHHHH
Confidence            56677778888888887753

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.54  E-value=1.4  Score=47.73  Aligned_cols=69  Identities=9%  Similarity=-0.021  Sum_probs=59.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613          112 LLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  182 (559)
Q Consensus       112 l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~-------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~  182 (559)
                      ..+.++.-+=..|+..+.|+.|.....++.  .|.+       +.++|..|.++.-.++|.+|..+|..|+...|.+.
T Consensus       229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          229 TKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             HHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             hhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            346677778899999999999999999985  4432       68899999999999999999999999999988653

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=87.51  E-value=1.4  Score=52.29  Aligned_cols=102  Identities=11%  Similarity=0.008  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC-c-------------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613           73 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-S-------------EGRTLLLACSLNSMSCYLKTKQYDECIKVGS  138 (559)
Q Consensus        73 ~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~-~-------------e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~  138 (559)
                      ..+-+|.+++..|+|++|..+|.++-.-...+.. .             .........|+.+...+.+.+.|+.+++.+.
T Consensus       844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~  923 (1139)
T 4fhn_B          844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL  923 (1139)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3477999999999999999999887432211110 0             0112234567888889999999999999999


Q ss_pred             HHHHcCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613          139 EVLAYDAK-NV----KALYRRGQAYKDIGRLEEAVSDLSNA  174 (559)
Q Consensus       139 ~AL~ldP~-~~----kal~~rG~A~~~lg~~eeAi~dlekA  174 (559)
                      .||+..+. +.    ..|.+.=..+..+++|++|...+-..
T Consensus       924 lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          924 LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             HHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence            99987543 32    25778888999999999998887544

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=86.75  E-value=12  Score=39.12  Aligned_cols=81  Identities=20%  Similarity=0.266  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHH
Q 008613          116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAK------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS---PDDGTIAD  186 (559)
Q Consensus       116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~------~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~---P~~~~a~~  186 (559)
                      +-.+++..|+..|+|.+|+..+.++++....      -...|......|..++++..+...|.++....   +.++.+..
T Consensus       101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a  180 (394)
T 3txn_A          101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG  180 (394)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence            3448899999999999999999988874221      25678888999999999999999999997753   35666666


Q ss_pred             HHHHHHHHHH
Q 008613          187 VLRDAKEILM  196 (559)
Q Consensus       187 ~L~~a~~~l~  196 (559)
                      .+..+.-.+.
T Consensus       181 ~i~~~~Gi~~  190 (394)
T 3txn_A          181 ALDLQSGILH  190 (394)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHhhHHH
Confidence            6655544443

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=84.29  E-value=7.7  Score=39.30  Aligned_cols=116  Identities=4%  Similarity=-0.065  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC---c---hhhhhHHHHHHHHHHHHHHcCC-------HHHHHH--
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS---S---EGRTLLLACSLNSMSCYLKTKQ-------YDECIK--  135 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~---~---e~~~l~~~~~~nlA~~ylklg~-------y~eAi~--  135 (559)
                      .......|-.++..|+|.+|+..|+.+|...+-..-   .   +.+++...|....-.+-+++.+       ....++  
T Consensus       114 L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELA  193 (325)
T 3mv2_A          114 VNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELA  193 (325)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            334556899999999999999999999988764321   1   2344444443333322222211       111111  


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008613          136 VGSEVLAYDAKNVKALYRRGQAY-KDIGRLEEAVSDLSNAHEVSPDDGTIAD  186 (559)
Q Consensus       136 ~~~~AL~ldP~~~kal~~rG~A~-~~lg~~eeAi~dlekAl~l~P~~~~a~~  186 (559)
                      .|=.-.++.|.+...-++.|... ++.++|.-|....++.|++.|..+.+..
T Consensus       194 AYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~q  245 (325)
T 3mv2_A          194 AYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQ  245 (325)
T ss_dssp             HHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHH
T ss_pred             HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence            11111234555544445555554 6889999999999999999997654433

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=84.08  E-value=4.1  Score=45.10  Aligned_cols=91  Identities=12%  Similarity=-0.070  Sum_probs=63.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008613           76 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG  155 (559)
Q Consensus        76 ~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG  155 (559)
                      ..+..++..+...++...+.+++...   .+.   .    ..-.++...++.++|+.|...+.+.-.-.....+..|++|
T Consensus       257 ~ia~~~~~~~~~~~~~~~~~~~~~~~---~~~---~----~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~  326 (618)
T 1qsa_A          257 IVAWRLMGNDVTDEQAKWRDDAIMRS---QST---S----LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQA  326 (618)
T ss_dssp             HHHHTSCSTTCCHHHHHHHHHHHHTC---CCH---H----HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHH
T ss_pred             HHHHHHHHcCCChHHHHHHHhccccC---CCh---H----HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHH
Confidence            34444555554567777777765432   111   1    1222333345679999999999876654446789999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHH
Q 008613          156 QAYKDIGRLEEAVSDLSNAHE  176 (559)
Q Consensus       156 ~A~~~lg~~eeAi~dlekAl~  176 (559)
                      .++..+|+.++|...|+++..
T Consensus       327 ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          327 DLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHhc
Confidence            999999999999999999875

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=83.97  E-value=28  Score=35.04  Aligned_cols=27  Identities=11%  Similarity=-0.117  Sum_probs=24.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008613          146 KNVKALYRRGQAYKDIGRLEEAVSDLS  172 (559)
Q Consensus       146 ~~~kal~~rG~A~~~lg~~eeAi~dle  172 (559)
                      .++..|...|..|..-+++.+|..+|-
T Consensus       132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          132 GDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            478899999999999999999998874

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=83.67  E-value=10  Score=38.43  Aligned_cols=113  Identities=12%  Similarity=0.149  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC-c-----hhhhhHHHHHHHHHHHHHHc--CCH-----HHHHHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-S-----EGRTLLLACSLNSMSCYLKT--KQY-----DECIKV  136 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~-~-----e~~~l~~~~~~nlA~~ylkl--g~y-----~eAi~~  136 (559)
                      ........|-.++..|+|.+|+..|+.+|...+-... .     +.+++...|.-..-.+-+++  ++.     ++..+.
T Consensus       101 ~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~  180 (320)
T 3mkr_B          101 DLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRI  180 (320)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHH
Confidence            3444567899999999999999999999998864321 1     23444444444333333333  221     222222


Q ss_pred             HHHH-----HHcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCH
Q 008613          137 GSEV-----LAYDAKNVKALYRRGQAY-KDIGRLEEAVSDLSNAHEVSPDDG  182 (559)
Q Consensus       137 ~~~A-----L~ldP~~~kal~~rG~A~-~~lg~~eeAi~dlekAl~l~P~~~  182 (559)
                      ++-+     .++.|.+...-++.|... ++.++|.-|....++.|++.|..+
T Consensus       181 lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~  232 (320)
T 3mkr_B          181 CEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE  232 (320)
T ss_dssp             HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH
T ss_pred             HHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence            2211     234555555555555555 688999999999999999988643

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=82.84  E-value=29  Score=31.97  Aligned_cols=83  Identities=13%  Similarity=-0.037  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k  149 (559)
                      ....|+.+|..++..|++.-|..+|.++-.                 +..+...|.-.|+-+.-....+.+....-    
T Consensus        33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----------------~~~L~~Ly~~tg~~e~L~kla~iA~~~g~----   91 (177)
T 3mkq_B           33 DSITWERLIQEALAQGNASLAEMIYQTQHS-----------------FDKLSFLYLVTGDVNKLSKMQNIAQTRED----   91 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----------------HHHHHHHHHHHTCHHHHHHHHHHHHHTTC----
T ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----------------HHHHHHHHHHhCCHHHHHHHHHHHHHCcc----
Confidence            367899999999999999999999988643                 23445556666666555544444433221    


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613          150 ALYRRGQAYKDIGRLEEAVSDLSNA  174 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~dlekA  174 (559)
                       +.....++..+|+++++++.|.+.
T Consensus        92 -~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           92 -FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             -HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHcCCHHHHHHHHHHC
Confidence             223344556677777777766543

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=82.23  E-value=8.1  Score=41.11  Aligned_cols=97  Identities=10%  Similarity=0.075  Sum_probs=72.4

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCc-------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----------CC
Q 008613           85 GRFSNALQKYLLAKKNLQGIHSS-------EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA----------KN  147 (559)
Q Consensus        85 g~y~eAi~~Y~kAL~l~p~~~~~-------e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP----------~~  147 (559)
                      ...++|.....++..++-.+...       +.+.....+..++-.+|+++++..-|...+...-...+          ..
T Consensus       140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~  219 (455)
T 3t5v_B          140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ  219 (455)
T ss_dssp             HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence            34577888899999886654321       13344445566778999999999998888765433221          23


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q 008613          148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEV-SPDD  181 (559)
Q Consensus       148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l-~P~~  181 (559)
                      +.++|.+|..+...++|.+|..++..|+.. +|.+
T Consensus       220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~  254 (455)
T 3t5v_B          220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP  254 (455)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence            689999999999999999999999999999 8865

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=80.15  E-value=18  Score=39.86  Aligned_cols=49  Identities=8%  Similarity=-0.121  Sum_probs=37.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613           78 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV  140 (559)
Q Consensus        78 Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~A  140 (559)
                      -..++..|++++|.+.+...     .+         ...|.++|..+++.++++.|+..|.++
T Consensus       659 f~~~l~~~~~~~A~~~~~~~-----~~---------~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          659 FELALKVGQLTLARDLLTDE-----SA---------EMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHTCHHHHHHHHTTC-----CC---------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             eehhhhcCCHHHHHHHHHhh-----Cc---------HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            34566778888887765321     12         238999999999999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	559
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-12
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	1e-10
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	4e-10
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	5e-09
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	9e-09
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	1e-08
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	2e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.003
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	4e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.001
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.003

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 63.4 bits (153), Expect = 2e-12
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 8/145 (5%)

Query: 63  QMNYE--FNAAKMLKKQGNELYSEGRFSNALQKYLLA------KKNLQGIHSSEGRTLLL 114
           +M+ +     A ++K++G   +  G++  A+ +Y         +  L    S    + LL
Sbjct: 5   EMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLL 64

Query: 115 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 174
           A  LN   CYLK ++Y + ++   + L  D+ N K LYRRG+A   +   E A  D    
Sbjct: 65  AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV 124

Query: 175 HEVSPDDGTIADVLRDAKEILMKED 199
            EV+P +      +   ++   + +
Sbjct: 125 LEVNPQNKAARLQIFMCQKKAKEHN 149

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 57.7 bits (138), Expect = 1e-10
 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 7/137 (5%)

Query: 68  FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNL-------QGIHSSEGRTLLLACSLNS 120
             +A  +K++GNE + +   + A+ KY  A             I   + + + ++C+LN 
Sbjct: 14  VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 73

Query: 121 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
            +CY K K Y + I   S+VL  D  NVKALY+ G A    G LEEA  +L  A  ++P+
Sbjct: 74  ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 133

Query: 181 DGTIADVLRDAKEILMK 197
           +  I +        L +
Sbjct: 134 NLDIRNSYELCVNKLKE 150

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.6 bits (135), Expect = 4e-10
 Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 7/138 (5%)

Query: 69  NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-------SEGRTLLLACSLNSM 121
             ++ LK  GN  +    +  A++KY    + ++G  +       ++ + + L+C LN  
Sbjct: 25  LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG 84

Query: 122 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
           +C LK   +   +    E L  D  N KALYRR Q ++ +   ++A++DL  A E++P+D
Sbjct: 85  ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 144

Query: 182 GTIADVLRDAKEILMKED 199
             I   L   K+ +  + 
Sbjct: 145 KAIQAELLKVKQKIKAQK 162

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.2 bits (129), Expect = 5e-09
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 14/135 (10%)

Query: 70  AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 129
           +A+ LK+QGN L+   ++  A   Y  A       +             N   CYLK +Q
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYT-----NRALCYLKMQQ 53

Query: 130 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-----GTI 184
            ++ +      L  D ++VKA +  GQ   ++   +EA+++L  A+ ++ +        I
Sbjct: 54  PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 113

Query: 185 ADVLRDAKEILMKED 199
              LR AK+      
Sbjct: 114 PSALRIAKKKRWNSI 128

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 9e-09
 Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 17/135 (12%)

Query: 71  AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 130
           A   K+ GN+ Y +  F  AL+ Y  AK+      +            N  + Y +   Y
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT---------YITNQAAVYFEKGDY 54

Query: 131 DECIKVGSEVLAYDAKNV-------KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 183
           ++C ++  + +    +N        KA  R G +Y    + ++A+   + +         
Sbjct: 55  NKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP-D 113

Query: 184 IADVLRDAKEILMKE 198
           +    + A++IL ++
Sbjct: 114 VLKKCQQAEKILKEQ 128

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 1e-08
 Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 9/129 (6%)

Query: 71  AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 130
           A+ LK Q N+ +    + NA++ Y  A +                   N    YL+T+ Y
Sbjct: 10  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---------IYYGNRSLAYLRTECY 60

Query: 131 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 190
              +   +  +  D K +K  YRR  +   +G+   A+ D     +V P D       ++
Sbjct: 61  GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 120

Query: 191 AKEILMKED 199
             +I+ ++ 
Sbjct: 121 CNKIVKQKA 129

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 2e-08
 Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 8/145 (5%)

Query: 63  QMNYE--FNAAKMLKKQGNELYSEGRFSNALQKYLLA------KKNLQGIHSSEGRTLLL 114
           +MN E     + ++K++G   + EG++  AL +Y         + +     + + + L L
Sbjct: 3   EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRL 62

Query: 115 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 174
           A  LN   C+LK + +   I+  ++ L  D+ N K L RRG+A+  +   E A +D    
Sbjct: 63  ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKV 122

Query: 175 HEVSPDDGTIADVLRDAKEILMKED 199
            ++ P++      L   ++ + ++ 
Sbjct: 123 LQLYPNNKAAKTQLAVCQQRIRRQL 147

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-07
 Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 13/126 (10%)

Query: 69  NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 128
           +         N L  +G  + A   Y  A +                   N  +   +  
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD---------SLNNLANIKREQG 319

Query: 129 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT----I 184
             +E +++  + L    +   A        +  G+L+EA+     A  +SP        +
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379

Query: 185 ADVLRD 190
            + L++
Sbjct: 380 GNTLKE 385

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 6/58 (10%), Positives = 19/58 (32%)

Query: 124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
             +   ++   +   ++   +  N   L      +    RL+ +    + A + +P  
Sbjct: 9   EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL 66

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 12/86 (13%), Positives = 25/86 (29%), Gaps = 9/86 (10%)

Query: 74  LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 133
             +  +  Y  G F  A +  +   +            LL        S + + ++ D  
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWR----QEPDNTGVLL-----LLSSIHFQCRRLDRS 52

Query: 134 IKVGSEVLAYDAKNVKALYRRGQAYK 159
               +  +  +    +A    G  YK
Sbjct: 53  AHFSTLAIKQNPLLAEAYSNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 9/64 (14%), Positives = 22/64 (34%)

Query: 118 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 177
           +N  +   + + +D  +      L+    +          Y + G ++ A+     A E+
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266

Query: 178 SPDD 181
            P  
Sbjct: 267 QPHF 270

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 9/85 (10%)

Query: 78  GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 137
            N    +G    A++ Y  A +    +              N  S   +  +  E +   
Sbjct: 312 ANIKREQGNIEEAVRLYRKALE----VFPEFAAAHS-----NLASVLQQQGKLQEALMHY 362

Query: 138 SEVLAYDAKNVKALYRRGQAYKDIG 162
            E +        A    G   K++ 
Sbjct: 363 KEAIRISPTFADAYSNMGNTLKEMQ 387

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 1e-06
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 9/123 (7%)

Query: 71  AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 130
              LK++GN+  S G   +ALQ Y  A K     H             N  + Y K   Y
Sbjct: 3   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH---------VLYSNRSAAYAKKGDY 53

Query: 131 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 190
            +  + G + +       K   R+  A + + R EEA        +   ++  + + L++
Sbjct: 54  QKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 113

Query: 191 AKE 193
            + 
Sbjct: 114 MEA 116

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 21/146 (14%), Positives = 36/146 (24%), Gaps = 38/146 (26%)

Query: 74  LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLL-------------------- 113
           L  +G     +  +  AL  +   +     I  + G                        
Sbjct: 8   LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 67

Query: 114 --LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN----------------VKALYRRG 155
                       Y +T++YD  IK   E L     N                 + LY   
Sbjct: 68  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIA 127

Query: 156 QAYKDIGRLEEAVSDLSNAHEVSPDD 181
             Y      ++A   L+ A  +  + 
Sbjct: 128 FMYAKKEEWKKAEEQLALATSMKSEP 153

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 12/68 (17%), Positives = 23/68 (33%)

Query: 124 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 183
            L   Q  + +++  E +    K+        +     G  E A   L  + ++ P+   
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

Query: 184 IADVLRDA 191
            A  LR  
Sbjct: 66  GASQLRHL 73

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 126 KTKQYDECIKVGSEVLA----YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 181
            T Q +  +    ++LA     D +  + LY RG  Y  +G    A +D S A  + PD 
Sbjct: 11  PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM 70

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 10/61 (16%), Positives = 20/61 (32%)

Query: 121 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 180
            +      Q +E +      L      +++ Y  G +  ++G   EAV     A  +   
Sbjct: 213 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 272

Query: 181 D 181
            
Sbjct: 273 S 273

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 0.003
 Identities = 16/115 (13%), Positives = 29/115 (25%), Gaps = 8/115 (6%)

Query: 87  FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 146
           F N +       KN    + SE +  L             +  Y + ++    V   D  
Sbjct: 65  FKNQITTLQGQAKNRANPNRSEVQANLSLF------LEAASGFYTQLLQELCTVFNVDLP 118

Query: 147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI--ADVLRDAKEILMKED 199
                 + G            V   S++         +   D+ R   +    E 
Sbjct: 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAES 173

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	559
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.83
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.8
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.8
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.77
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.74
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.72
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.59
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.54
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.53
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.52
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.51
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.5
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.49
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.48
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.47
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.45
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.45
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.44
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.41
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.31
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.27
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.21
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.21
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.2
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.18
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.18
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.15
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.14
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.1
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.08
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.04
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.02
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.98
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.93
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.93
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.92
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.92
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.68
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.52
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.52
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.51
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.48
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.41
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.37
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.35
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.29
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.27
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.18
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.08
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.69
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.26
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.25
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.99
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	80.76

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.83  E-value=1.7e-19  Score=164.06  Aligned_cols=133  Identities=30%  Similarity=0.444  Sum_probs=121.8

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc-------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS-------EGRTLLLACSLNSMSCYLKTKQYDECIKVGSE  139 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~-------e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~  139 (559)
                      .+..+..++..|+.+|+.|+|.+|+..|.+||.+.+.....       ....+...+|+|+|.||+++++|++|+.+|++
T Consensus        13 ~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~   92 (153)
T d2fbna1          13 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK   92 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhc
Confidence            56678999999999999999999999999999988776532       23455678999999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 008613          140 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  199 (559)
Q Consensus       140 AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~  199 (559)
                      +|+++|+++++|+++|.+|..+|+|++|+.+|+++++++|++..+...+..+..++++.+
T Consensus        93 al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~~  152 (153)
T d2fbna1          93 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR  152 (153)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHC
Confidence            999999999999999999999999999999999999999999999999999998887643

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=8.6e-19  Score=162.09  Aligned_cols=133  Identities=24%  Similarity=0.377  Sum_probs=122.6

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS------EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV  140 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~------e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~A  140 (559)
                      .+..+..+++.|+.+|+.|+|++|+..|+++|.+.+.....      ....+...+|.|+|.||+++|+|++|+.+|+++
T Consensus         9 k~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~a   88 (170)
T d1p5qa1           9 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA   88 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhh
Confidence            66679999999999999999999999999999998876542      245677789999999999999999999999999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 008613          141 LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  199 (559)
Q Consensus       141 L~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~  199 (559)
                      |+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|+++.+...+..+...+.+..
T Consensus        89 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  147 (170)
T d1p5qa1          89 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL  147 (170)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988876554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.80  E-value=1.4e-18  Score=160.06  Aligned_cols=133  Identities=25%  Similarity=0.401  Sum_probs=122.2

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS------EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV  140 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~------e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~A  140 (559)
                      .+..++.+++.|+.+|+.|+|.+|+.+|.+||.+.+.....      ....+...+|.|+|.||+++++|++|+.+|+++
T Consensus        11 ~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~a   90 (168)
T d1kt1a1          11 KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA   90 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhh
Confidence            55679999999999999999999999999999998876542      345667889999999999999999999999999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 008613          141 LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  199 (559)
Q Consensus       141 L~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~  199 (559)
                      |+++|+++++|+++|.+|..+|+|++|+.+|++++.++|+++.+...+..+...+....
T Consensus        91 l~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  149 (168)
T d1kt1a1          91 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHN  149 (168)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999988876543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.5e-19  Score=153.35  Aligned_cols=115  Identities=23%  Similarity=0.275  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k  149 (559)
                      .+..++.+|+.+++.|+|++|+.+|+++|.++|.++.         +|+++|.||+++|+|++|+.+|+++++++|+++.
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~   72 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV---------LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK   72 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchh---------hhhcccccccccccccccchhhhhHHHhccchhh
Confidence            3677899999999999999999999999999999865         9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613          150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  193 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~  193 (559)
                      +|+++|.+|..+|+|++|+.+|+++++++|+++.++..++.++.
T Consensus        73 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          73 GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999888764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.2e-18  Score=154.26  Aligned_cols=122  Identities=22%  Similarity=0.341  Sum_probs=114.3

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      .+..++.++.+|+.+++.|+|++|+.+|.++++++|.++.         +|+++|.||+.+|++++|+.+|.++|+++|+
T Consensus         6 ~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~   76 (159)
T d1a17a_           6 ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI---------YYGNRSLAYLRTECYGYALGDATRAIELDKK   76 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhh---------hhhhhHHHHHhccccchHHHHHHHHHHHccc
Confidence            4466899999999999999999999999999999998865         9999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          147 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       147 ~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                      ++.+|+++|.+|..+|+|++|+.+|++++.++|++..++..+..+...+++
T Consensus        77 ~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  127 (159)
T d1a17a_          77 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  127 (159)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888887665543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=1.6e-17  Score=152.72  Aligned_cols=133  Identities=27%  Similarity=0.482  Sum_probs=118.2

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc-------hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS-------EGRTLLLACSLNSMSCYLKTKQYDECIKVGSE  139 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~-------e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~  139 (559)
                      .+..++.++..|+.++..|+|.+|+..|.++|.+.+.....       ........+|.|+|.||.++|+|++||.+|++
T Consensus        23 ~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~  102 (169)
T d1ihga1          23 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE  102 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhh
Confidence            34457778999999999999999999999999876543211       23566778999999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 008613          140 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  199 (559)
Q Consensus       140 AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~  199 (559)
                      ||+++|+++++|+++|.+|..+|+|++|+.+|+++++++|++..+...|..+...+....
T Consensus       103 al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~  162 (169)
T d1ihga1         103 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK  162 (169)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988876543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=9e-18  Score=155.95  Aligned_cols=102  Identities=26%  Similarity=0.375  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      ++.++++|+.|++.|+|++|+..|.++|.++|.++.         +|+|+|.||.++|+|++|+.+|.+||+++|+++.+
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~---------~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a   74 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV---------YYTNRALCYLKMQQPEQALADCRRALELDGQSVKA   74 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHH
Confidence            677999999999999999999999999999999865         99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  181 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~  181 (559)
                      |+++|.+|..+|+|++|+.+|++++.++|++
T Consensus        75 ~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          75 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999998854

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.3e-16  Score=136.92  Aligned_cols=117  Identities=21%  Similarity=0.296  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV-  148 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~-  148 (559)
                      .+..++++|+.++..|+|++|+.+|+++|+++|.++.         +|+|+|.||.++|+|++|+.+|+++|+++|++. 
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~   73 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT---------YITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE   73 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---------HHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHH
Confidence            4788999999999999999999999999999998755         999999999999999999999999999998874 


Q ss_pred             ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613          149 ------KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  196 (559)
Q Consensus       149 ------kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~  196 (559)
                            ++|+++|.++..+++|++|+.+|++++..+++ +.+...+..+.+.++
T Consensus        74 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~lk  126 (128)
T d1elra_          74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK  126 (128)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHh
Confidence                  68888999999999999999999999999875 567777777776664

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=8.6e-15  Score=140.46  Aligned_cols=118  Identities=20%  Similarity=0.053  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613           68 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  147 (559)
Q Consensus        68 ~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~  147 (559)
                      ...+..++.+|.+|++.|+|++|+..|+++|.++|.++.         +|+++|.||.++|+|++|+.+|+++++++|++
T Consensus        34 ~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  104 (259)
T d1xnfa_          34 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE---------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY  104 (259)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH---------HHhhhchHHHHHHHHHHhhhhhhHHHHHHhhh
Confidence            345888999999999999999999999999999999865         99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          148 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       148 ~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                      +.+|+++|.+|..+|++++|+..|+++++++|++......+..+...
T Consensus       105 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  151 (259)
T d1xnfa_         105 NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK  151 (259)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987766555544433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.6e-15  Score=128.03  Aligned_cols=113  Identities=16%  Similarity=0.155  Sum_probs=102.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC--HHH
Q 008613           76 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK---QYDECIKVGSEVLAYDAKN--VKA  150 (559)
Q Consensus        76 ~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg---~y~eAi~~~~~AL~ldP~~--~ka  150 (559)
                      ++.+.++..++|.+|.+.|.++|.++|.++.         +++|+|.|+.+.+   ++++||..|++++..+|.+  +.+
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~---------~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~   74 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKS---------TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDY   74 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH---------HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHH
Confidence            4678899999999999999999999999876         9999999998744   5667999999999998766  569


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  197 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~  197 (559)
                      |+++|.+|..+|+|++|+.+|+++++++|++..+...+..+..++++
T Consensus        75 ~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          75 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999888754

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=7.8e-14  Score=138.38  Aligned_cols=132  Identities=13%  Similarity=0.081  Sum_probs=114.1

Q ss_pred             HHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 008613           56 MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK  135 (559)
Q Consensus        56 a~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~  135 (559)
                      +...++..++..+..+..+..+|.++...|++.+|+..|.+++...|....         +++.++.+|.+.|+|++|+.
T Consensus       256 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~  326 (388)
T d1w3ba_         256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD---------SLNNLANIKREQGNIEEAVR  326 (388)
T ss_dssp             HHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccch---------hhhHHHHHHHHCCCHHHHHH
Confidence            334444444445555778888999999999999999999999998887754         88899999999999999999


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008613          136 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  196 (559)
Q Consensus       136 ~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~  196 (559)
                      .|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.++..|+.+...++
T Consensus       327 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999999998887664

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.7e-13  Score=135.51  Aligned_cols=206  Identities=11%  Similarity=-0.009  Sum_probs=162.1

Q ss_pred             ChHHHHHHHHHHhcCCHHHHHHHHHHhhCCChHHHHHHHHH-HHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Q 008613            4 NPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELY   82 (559)
Q Consensus         4 ~pe~l~~A~e~mk~m~pedl~~a~e~l~~~~pee~~~~~~~-~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~   82 (559)
                      .++.++++..-++....++....++.+-...|+........ .....-.++..+...+...+...+.....+..+|.+++
T Consensus        19 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   98 (323)
T d1fcha_          19 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT   98 (323)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccc
Confidence            34557777777777777777777766666666654433221 11111233445666666666667777889999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhcCCCCCc------------------------------hh------------hhhHHHHHHHH
Q 008613           83 SEGRFSNALQKYLLAKKNLQGIHSS------------------------------EG------------RTLLLACSLNS  120 (559)
Q Consensus        83 k~g~y~eAi~~Y~kAL~l~p~~~~~------------------------------e~------------~~l~~~~~~nl  120 (559)
                      ..|++++|+..|.+++.+.|.....                              +.            ......+++++
T Consensus        99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l  178 (323)
T d1fcha_          99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL  178 (323)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred             ccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence            9999999999999999988764321                              00            01123568899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC
Q 008613          121 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  200 (559)
Q Consensus       121 A~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~  200 (559)
                      |.++...|++++|+..|++++.++|+++.+|+.+|.+|..+|++++|+..|+++++++|++..++..++.+...+++.++
T Consensus       179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~  258 (323)
T d1fcha_         179 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHRE  258 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             CCCCccchh
Q 008613          201 HHGPRGLLI  209 (559)
Q Consensus       201 ~~~~~~~~i  209 (559)
                      +...+.+++
T Consensus       259 A~~~~~~al  267 (323)
T d1fcha_         259 AVEHFLEAL  267 (323)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777777666

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.51  E-value=2.3e-14  Score=129.62  Aligned_cols=112  Identities=17%  Similarity=0.255  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCch---hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE---GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e---~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~  146 (559)
                      .+..++..|+.++..|+|++|+..|+++|++.+..+...   .....+.+|+|+|.||.++|+|++|+.+|+++|++.|.
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            355566779999999999999999999999999877532   33446779999999999999999999999999987542


Q ss_pred             -----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613          147 -----------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  181 (559)
Q Consensus       147 -----------~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~  181 (559)
                                 ...+|+++|.+|..+|++++|+.+|++++++.|+.
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence                       35689999999999999999999999999997643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6e-14  Score=131.63  Aligned_cols=119  Identities=16%  Similarity=0.085  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k  149 (559)
                      .+-.++++|..++..|+|++|++.|.++   .+.+         ..+|+|+|.||..+|+|++|+.+|++||+++|+++.
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~---------~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~   71 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAV---QDPH---------SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV   71 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCC---------HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhh
Confidence            3567889999999999999999999864   3333         238999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHHHhhcC
Q 008613          150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD----------------GTIADVLRDAKEILMKEDG  200 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~----------------~~a~~~L~~a~~~l~~~~~  200 (559)
                      +|+++|.+|..+|+|++|+.+|++++...+.+                .+++..++.+...+++...
T Consensus        72 a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~  138 (192)
T d1hh8a_          72 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK  138 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHH
Confidence            99999999999999999999999999876653                2455666777666655544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=9.8e-14  Score=139.86  Aligned_cols=139  Identities=7%  Similarity=-0.034  Sum_probs=119.7

Q ss_pred             CCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCCCCCchhh
Q 008613           32 HTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG-RFSNALQKYLLAKKNLQGIHSSEGR  110 (559)
Q Consensus        32 ~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g-~y~eAi~~Y~kAL~l~p~~~~~e~~  110 (559)
                      ....++......++..+.|+.                  ..+|..+|.++...+ +|++|+..|.++++++|.+..    
T Consensus        56 ~e~~~~Al~~~~~ai~lnP~~------------------~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~----  113 (315)
T d2h6fa1          56 DERSERAFKLTRDAIELNAAN------------------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ----  113 (315)
T ss_dssp             TCCCHHHHHHHHHHHHHCTTC------------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----
T ss_pred             CCchHHHHHHHHHHHHHCCCC------------------hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhh----
Confidence            344555555555566666665                  889999999999876 499999999999999998865    


Q ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008613          111 TLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  190 (559)
Q Consensus       111 ~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~  190 (559)
                           +|+++|.|+.++|+|++|+.+|+++++++|++..+|+++|.++..++++++|+.+|+++++++|.+..++..++.
T Consensus       114 -----a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~  188 (315)
T d2h6fa1         114 -----VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF  188 (315)
T ss_dssp             -----HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             -----HHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHH
Confidence                 999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHh
Q 008613          191 AKEILMK  197 (559)
Q Consensus       191 a~~~l~~  197 (559)
                      +...++.
T Consensus       189 ~l~~~~~  195 (315)
T d2h6fa1         189 VISNTTG  195 (315)
T ss_dssp             HHHHTTC
T ss_pred             HHHHccc
Confidence            8766543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5e-14  Score=142.05  Aligned_cols=135  Identities=8%  Similarity=-0.080  Sum_probs=125.5

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcC
Q 008613           66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-YDECIKVGSEVLAYD  144 (559)
Q Consensus        66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~-y~eAi~~~~~AL~ld  144 (559)
                      +.+.-++.+...|.++.+.++|++|+.+|++||+++|.+..         +|++||.|+..+++ +++|+.+|+++++++
T Consensus        38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~---------a~~~r~~~l~~l~~~~~eal~~~~~al~~~  108 (315)
T d2h6fa1          38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT---------VWHFRRVLLKSLQKDLHEEMNYITAIIEEQ  108 (315)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChH---------HHHHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence            45566888888999999999999999999999999999865         99999999999875 999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          145 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       145 P~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      |++..+|++||.++..+|++++|+.+|+++++++|++..++..++.+...+++.+.+...+.++|
T Consensus       109 p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al  173 (315)
T d2h6fa1         109 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL  173 (315)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred             HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988887776677666

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.47  E-value=1.2e-13  Score=118.24  Aligned_cols=94  Identities=7%  Similarity=-0.045  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008613           73 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  152 (559)
Q Consensus        73 ~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~  152 (559)
                      .++..|.++++.|+|.+|+..|++++.++|.++.         +|+++|.||.+.+++++|+.+++++++++|+++.+|+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~   88 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE---------AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA   88 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccch---------hhhhhhhhhhhhhhHHHhhcccccccccccccccchH
Confidence            3567899999999999999999999999999865         9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Q 008613          153 RRGQAYKDIGRLEEAVSDLSNAH  175 (559)
Q Consensus       153 ~rG~A~~~lg~~eeAi~dlekAl  175 (559)
                      .+|.+|...|++++|++.|++.|
T Consensus        89 ~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          89 ALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHh
Confidence            99999999999999999999986

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.4e-13  Score=133.62  Aligned_cols=143  Identities=17%  Similarity=0.068  Sum_probs=127.0

Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 008613           58 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG  137 (559)
Q Consensus        58 ~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~  137 (559)
                      ..+..........+..+...|.++++.|+|++|+..|.+++++.|.++.         +|+++|.+|...|++++|+..+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~~~~~~A~~~~  294 (388)
T d1w3ba_         224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD---------AYCNLANALKEKGSVAEAEDCY  294 (388)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH---------HHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHH
Confidence            3344444444455777888999999999999999999999999998765         8999999999999999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          138 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       138 ~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      ..++...|.+...++.+|.+|..+|++++|+..|+++++++|++..++..++.+...+++.+++...+++++
T Consensus       295 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  366 (388)
T d1w3ba_         295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI  366 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998887777666666655

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.7e-13  Score=134.17  Aligned_cols=202  Identities=10%  Similarity=0.053  Sum_probs=159.3

Q ss_pred             HHHHHHHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 008613           21 EDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKN  100 (559)
Q Consensus        21 edl~~a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l  100 (559)
                      ..+.+....+..++.++......++....|..                  +..|..+|.+++..|+|++|+..|.+++++
T Consensus        21 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~   82 (323)
T d1fcha_          21 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH------------------MEAWQYLGTTQAENEQELLAISALRRCLEL   82 (323)
T ss_dssp             SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------HHHHHHHHHHHHHcCChHHHHHHHHhhhcc
Confidence            34667777788888888888888888877777                  889999999999999999999999999999


Q ss_pred             cCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------------------------------
Q 008613          101 LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK----------------------------------  146 (559)
Q Consensus       101 ~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~----------------------------------  146 (559)
                      .|.++.         +|+++|.||...|++++|+..+.+++.++|+                                  
T Consensus        83 ~p~~~~---------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (323)
T d1fcha_          83 KPDNQT---------ALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFL  153 (323)
T ss_dssp             CTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHH
T ss_pred             cccccc---------ccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHH
Confidence            998754         8999999999999999988888777655443                                  


Q ss_pred             -----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          147 -----------------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       147 -----------------~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                                       ++.+++.+|.++...|++++|+..|++++.++|++..++..++.+...+++...+...+.+++
T Consensus       154 ~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  233 (323)
T d1fcha_         154 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL  233 (323)
T ss_dssp             HHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHH
Confidence                             345688899999999999999999999999999999999999999999888777666666555


Q ss_pred             hhhchhhhccCCCCCCCCchhhhhhhcCCCCCCCCCCCCCCCCCCCccccCCCCCHHHHHHHHHHHHcCCcch
Q 008613          210 EEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDS  282 (559)
Q Consensus       210 ~e~~e~~~~~~~~~~~~s~~~~~~~e~~~s~~~~~~~~~~~~~~~~~~l~~l~~~PEai~~~~~~i~~~dpe~  282 (559)
                      + ..+.....            .                   ......+..++++.+|++.|.+.|+ ++|+.
T Consensus       234 ~-~~p~~~~a------------~-------------------~~lg~~~~~~g~~~~A~~~~~~al~-l~p~~  273 (323)
T d1fcha_         234 E-LQPGYIRS------------R-------------------YNLGISCINLGAHREAVEHFLEALN-MQRKS  273 (323)
T ss_dssp             H-HCTTCHHH------------H-------------------HHHHHHHHHHTCHHHHHHHHHHHHH-HHHTC
T ss_pred             H-HhhccHHH------------H-------------------HHHHHHHHHCCCHHHHHHHHHHHHH-hCCcC
Confidence            2 11111000            0                   0011123345789999999999998 35543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=7.3e-13  Score=124.06  Aligned_cols=102  Identities=17%  Similarity=0.157  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---  147 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---  147 (559)
                      +..++++|.+++..|+|++|+..|.+||+++|.++.         +|+++|.||.++|+|++|+.+|++++...+.+   
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~---------a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~  106 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV---------AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI  106 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEE
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhh---------hHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchH
Confidence            567899999999999999999999999999999865         99999999999999999999999999876543   


Q ss_pred             -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 008613          148 -------------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  181 (559)
Q Consensus       148 -------------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~  181 (559)
                                   ..+++++|.+|..+|++++|+..|++++.+.|+.
T Consensus       107 ~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         107 DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             ECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence                         4789999999999999999999999999998874

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.41  E-value=2.9e-13  Score=121.36  Aligned_cols=110  Identities=18%  Similarity=0.076  Sum_probs=97.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCHH
Q 008613           80 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT----------KQYDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus        80 ~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl----------g~y~eAi~~~~~AL~ldP~~~k  149 (559)
                      .+-+.+.|++|+..|+++++++|.++.         +|+++|.||..+          +.+++|+..|++||+++|+++.
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~---------~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~   76 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDAD---------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE   76 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchH---------HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhH
Confidence            455667799999999999999999976         999999999855          5568999999999999999999


Q ss_pred             HHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613          150 ALYRRGQAYKDIGR-----------LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  198 (559)
Q Consensus       150 al~~rG~A~~~lg~-----------~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~  198 (559)
                      +|+++|.+|..+|+           |++|+.+|++++.++|++..++..|+...+..+.+
T Consensus        77 a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~  136 (145)
T d1zu2a1          77 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLH  136 (145)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHH
T ss_pred             HHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999988764           79999999999999999999999999887666443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=3.4e-12  Score=121.95  Aligned_cols=120  Identities=9%  Similarity=-0.126  Sum_probs=103.6

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 008613           85 GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL  164 (559)
Q Consensus        85 g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~  164 (559)
                      .+++.|+..+.+++...+..     ....+.+|+++|.||.++|+|++|+..|+++|+++|+++.+|+++|.+|..+|++
T Consensus        13 ~~~e~al~~~~e~l~~~~~~-----~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~   87 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALT-----DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF   87 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHH
Confidence            35678888888887643322     2335679999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          165 EEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       165 eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      ++|+.+|+++++++|++..++..++.+...+++...+...+++++
T Consensus        88 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  132 (259)
T d1xnfa_          88 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY  132 (259)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            999999999999999999999999999988887766555555554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.1e-11  Score=102.60  Aligned_cols=89  Identities=12%  Similarity=-0.003  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      ++.++++|..+++.|+|.+|+..|.+|+++.|..+..  ......+|.|+|.||.++|+|++|+..|+++|+++|+++.+
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~--~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a   82 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIS--TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC--SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhcc--CccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHH
Confidence            4568899999999999999999999999998876532  22346789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHc
Q 008613          151 LYRRGQAYKDI  161 (559)
Q Consensus       151 l~~rG~A~~~l  161 (559)
                      +++++.....+
T Consensus        83 ~~Nl~~~~~~l   93 (95)
T d1tjca_          83 NGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99988776554

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2e-10  Score=103.06  Aligned_cols=115  Identities=10%  Similarity=0.068  Sum_probs=94.6

Q ss_pred             HHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc
Q 008613           28 EQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS  107 (559)
Q Consensus        28 e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~  107 (559)
                      ..++..+.++......++....|..                  +..|..+|.+++..|+|.+|+..|.++|+++|.+.. 
T Consensus        19 ~~~~~~~y~~A~~~~~~al~~~p~~------------------~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~-   79 (159)
T d1a17a_          19 DYFKAKDYENAIKFYSQAIELNPSN------------------AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK-   79 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTC------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-
T ss_pred             HHHHcCCHHHHHHHhhhccccchhh------------------hhhhhhhHHHHHhccccchHHHHHHHHHHHcccchH-
Confidence            3455566666666666666655555                  999999999999999999999999999999999865 


Q ss_pred             hhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--CCHHHHHH
Q 008613          108 EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI--GRLEEAVS  169 (559)
Q Consensus       108 e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~l--g~~eeAi~  169 (559)
                              +|+++|.||..+|+|++|+.+|.++++++|+++.++..++.+...+  +.+++|+.
T Consensus        80 --------a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_          80 --------GYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             --------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                    8999999999999999999999999999999999988887775433  33444443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.21  E-value=2.1e-10  Score=106.19  Aligned_cols=114  Identities=12%  Similarity=0.039  Sum_probs=101.5

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCc-------------hhhhhHHHHHHHHHHHHHHcCCHHHH
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS-------------EGRTLLLACSLNSMSCYLKTKQYDEC  133 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~-------------e~~~l~~~~~~nlA~~ylklg~y~eA  133 (559)
                      .+...+.++..|+.+...|++++|+..|.+||.+.+.....             ........++.+++.+++++|+|++|
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            45568889999999999999999999999999998765421             23455678999999999999999999


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCC
Q 008613          134 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA-------HEVSPD  180 (559)
Q Consensus       134 i~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekA-------l~l~P~  180 (559)
                      +.+|+++++++|.+..+|++++.+|..+|++.+|+..|+++       +.++|.
T Consensus        87 l~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          87 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            99999999999999999999999999999999999999998       446675

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=9.8e-11  Score=100.28  Aligned_cols=106  Identities=8%  Similarity=0.028  Sum_probs=92.1

Q ss_pred             HHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC
Q 008613           27 AEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS  106 (559)
Q Consensus        27 ~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~  106 (559)
                      -..+...+.++......++....|..                  +..+..+|.+++..|+|.+|+..|.+++.++|.++.
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~~p~~------------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~   72 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKLDPHN------------------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK   72 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTC------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCcc------------------hhhhhcccccccccccccccchhhhhHHHhccchhh
Confidence            33555666666666666666666666                  999999999999999999999999999999999865


Q ss_pred             chhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008613          107 SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK  159 (559)
Q Consensus       107 ~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~  159 (559)
                               +|+++|.||..+|+|++|+..|+++++++|+++.++..++.+..
T Consensus        73 ---------~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          73 ---------GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             ---------HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence                     99999999999999999999999999999999999999887753

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=1.9e-11  Score=112.44  Aligned_cols=94  Identities=12%  Similarity=0.029  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                      .+.+.|.+|++.|+|++|+..|+++|+++|+++.+|+++|.+|..+|+|++|+.+|++++.++|++..++..++.+...+
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l   85 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM   85 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCccchh
Q 008613          196 MKEDGHHGPRGLLI  209 (559)
Q Consensus       196 ~~~~~~~~~~~~~i  209 (559)
                      ++...+...+++++
T Consensus        86 ~~~~~A~~~~~~al   99 (201)
T d2c2la1          86 ESYDEAIANLQRAY   99 (201)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            88877666666555

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.18  E-value=3.8e-11  Score=102.23  Aligned_cols=87  Identities=14%  Similarity=0.069  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008613          116 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  195 (559)
Q Consensus       116 ~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l  195 (559)
                      .++++|.++++.|+|++|+..|+++++++|+++.+|+.+|.+|..++++++|+.+|+++++++|++..++..|+.+...+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HhhcCCC
Q 008613          196 MKEDGHH  202 (559)
Q Consensus       196 ~~~~~~~  202 (559)
                      ++...+.
T Consensus        98 g~~~~A~  104 (112)
T d1hxia_          98 HNANAAL  104 (112)
T ss_dssp             HHHHHHH
T ss_pred             CCHHHHH
Confidence            8766543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4.3e-11  Score=127.71  Aligned_cols=122  Identities=7%  Similarity=-0.074  Sum_probs=87.2

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613           66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA  145 (559)
Q Consensus        66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP  145 (559)
                      ..+..+..+...|..+.+.+++.+|+..|.+++.+++.           .+++++|.++...++|++|+.+|.+|++++|
T Consensus       115 l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-----------~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P  183 (497)
T d1ya0a1         115 VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ-----------HCLVHLGDIARYRNQTSQAESYYRHAAQLVP  183 (497)
T ss_dssp             ----------------------------CCHHHHHHHH-----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH-----------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence            34556677888999999999999999999999987553           2899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 008613          146 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  198 (559)
Q Consensus       146 ~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~  198 (559)
                      ++..+|+.+|.+|...|++.+|+.+|.+++.++|.++.++..|..+.....+.
T Consensus       184 ~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~  236 (497)
T d1ya0a1         184 SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALES  236 (497)
T ss_dssp             TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTS
T ss_pred             CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999887776543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.2e-10  Score=96.18  Aligned_cols=82  Identities=16%  Similarity=0.062  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008613          115 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV  187 (559)
Q Consensus       115 ~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~-------~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~  187 (559)
                      .-++++|.++++.|+|.+|+..|++|+++.|.+       +.+|+++|.+|..+|++++|+..|+++|+++|+++.++..
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            357899999999999999999999999986654       6899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 008613          188 LRDAKEILM  196 (559)
Q Consensus       188 L~~a~~~l~  196 (559)
                      +..++..+.
T Consensus        86 l~~~~~~l~   94 (95)
T d1tjca_          86 LKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhC
Confidence            999888774

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.10  E-value=1.1e-09  Score=99.28  Aligned_cols=94  Identities=10%  Similarity=0.004  Sum_probs=85.3

Q ss_pred             HhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008613           66 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA  145 (559)
Q Consensus        66 ~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP  145 (559)
                      ..+..+..+.++|.++++.|+|++||..|+++|+++|.++.         +|+++|.||..+|+|++|+.+|.++++++|
T Consensus        72 ~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~---------a~~~~g~~~~~l~~~~~A~~~~~~al~l~p  142 (169)
T d1ihga1          72 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK---------ALYRRAQGWQGLKEYDQALADLKKAQEIAP  142 (169)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhh---------HHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            35566888999999999999999999999999999998865         999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHH
Q 008613          146 KNVKALYRRGQAYKDIGRLEEAV  168 (559)
Q Consensus       146 ~~~kal~~rG~A~~~lg~~eeAi  168 (559)
                      ++..++..++.++..+..+.++.
T Consensus       143 ~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         143 EDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988877766653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=8.5e-11  Score=102.31  Aligned_cols=96  Identities=14%  Similarity=0.042  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008613          114 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  193 (559)
Q Consensus       114 ~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~  193 (559)
                      +..+.++|.+|+..|+|++|+.+|+++|+++|+++.+|+++|.+|..+|+|++|+.+|++++.++|++...+..++.+..
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34677999999999999999999999999999999999999999999999999999999999999998777777777766


Q ss_pred             HHHhhcCCCCCccchh
Q 008613          194 ILMKEDGHHGPRGLLI  209 (559)
Q Consensus       194 ~l~~~~~~~~~~~~~i  209 (559)
                      .++........+..++
T Consensus        84 ~lg~~~~~~~~~~~A~   99 (128)
T d1elra_          84 RIGNSYFKEEKYKDAI   99 (128)
T ss_dssp             HHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhCCHHHHH
Confidence            6666555455555454

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.08  E-value=9.5e-10  Score=99.88  Aligned_cols=96  Identities=10%  Similarity=-0.045  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613           70 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus        70 ~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~k  149 (559)
                      ....+.++|.+|++.|+|.+|+..|+++|.++|.+..         +|+++|.||..+|+|++|+.+|.+++.++|++..
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~---------a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~  133 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK---------GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA  133 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            3566788999999999999999999999999998854         9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHH-HHHHHHHH
Q 008613          150 ALYRRGQAYKDIGRLEE-AVSDLSNA  174 (559)
Q Consensus       150 al~~rG~A~~~lg~~ee-Ai~dlekA  174 (559)
                      ++..++.+...++.+.+ ....|.+.
T Consensus       134 ~~~~l~~~~~~~~~~~e~~kk~~~~~  159 (168)
T d1kt1a1         134 ARLQIFMCQKKAKEHNERDRRTYANM  159 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            99999999888877654 33333333

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.6e-09  Score=98.74  Aligned_cols=89  Identities=12%  Similarity=-0.075  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      ...+.+.|.+|++.|+|++|+..|+++|.++|.++.         +|+++|.||..+|+|++|+.+|.++++++|+++.+
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~---------a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~  132 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK---------GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA  132 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhccccchh---------hhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence            456778999999999999999999999999998855         99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHH
Q 008613          151 LYRRGQAYKDIGRLEEAV  168 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi  168 (559)
                      +..++.++..++++.+..
T Consensus       133 ~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         133 KTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999988887766543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.02  E-value=1.5e-09  Score=108.21  Aligned_cols=159  Identities=12%  Similarity=-0.001  Sum_probs=130.2

Q ss_pred             hHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHH
Q 008613           35 PEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLL  114 (559)
Q Consensus        35 pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~  114 (559)
                      .++......++....|+...+        +.+.......+...+..+...+++.+|+.+|++++..+|.++.        
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a--------~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~--------  108 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATL--------WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG--------  108 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHH--------HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH--------
T ss_pred             cHHHHHHHHHHHHHCCCcHHH--------HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHH--------
Confidence            356666777777777776221        1112222344555666777888899999999999999999865        


Q ss_pred             HHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613          115 ACSLNSMSCYLKTKQ--YDECIKVGSEVLAYDAKNVKAL-YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  191 (559)
Q Consensus       115 ~~~~nlA~~ylklg~--y~eAi~~~~~AL~ldP~~~kal-~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a  191 (559)
                       +|++++.++..+++  +++|+..+.++++++|++..++ +.+|.++...+++++|+..+++++.++|++..++..++.+
T Consensus       109 -~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~  187 (334)
T d1dcea1         109 -TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL  187 (334)
T ss_dssp             -HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHH
T ss_pred             -HHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence             89999999988875  8999999999999999999886 5778999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCccchhh
Q 008613          192 KEILMKEDGHHGPRGLLIE  210 (559)
Q Consensus       192 ~~~l~~~~~~~~~~~~~i~  210 (559)
                      ...+++...+...+...+.
T Consensus       188 ~~~~~~~~~A~~~~~~~~~  206 (334)
T d1dcea1         188 LPQLHPQPDSGPQGRLPEN  206 (334)
T ss_dssp             HHHHSCCCCSSSCCSSCHH
T ss_pred             HHHhcCHHHHHHHHHHhHH
Confidence            9999998887777666553

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.98  E-value=2.3e-09  Score=95.85  Aligned_cols=84  Identities=5%  Similarity=-0.095  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      ...+.++|.+|++.|+|.+|+..|.++|.++|.+..         +|+++|.||..+|+|++|+.+|.++++++|++..+
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~k---------a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~  137 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVK---------ALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI  137 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccchhhh---------hhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            456788999999999999999999999999998754         99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 008613          151 LYRRGQAYKDIGR  163 (559)
Q Consensus       151 l~~rG~A~~~lg~  163 (559)
                      ...+..+...+++
T Consensus       138 ~~~l~~~~~kl~~  150 (153)
T d2fbna1         138 RNSYELCVNKLKE  150 (153)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9888888766543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=7.7e-10  Score=95.88  Aligned_cols=104  Identities=9%  Similarity=-0.012  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHc
Q 008613           51 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG---RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT  127 (559)
Q Consensus        51 ee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g---~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylkl  127 (559)
                      +++..+.+..+..+...+..++.+++.|.++++.+   ++.+||..|.+++...|...       ...+|+++|.||.++
T Consensus        13 ~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~-------~~~~~~~Lg~~y~~~   85 (122)
T d1nzna_          13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE-------QRDYVFYLAVGNYRL   85 (122)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH-------HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCch-------HHHHHHHHHHHHHHH
Confidence            44445555555555556666999999999998755   45679999999998755431       245899999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008613          128 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI  161 (559)
Q Consensus       128 g~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~l  161 (559)
                      |+|++|+.+|+++|+++|++..++..++.+...+
T Consensus        86 g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          86 KEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888777654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.93  E-value=8.8e-10  Score=98.09  Aligned_cols=104  Identities=14%  Similarity=0.037  Sum_probs=84.3

Q ss_pred             HHHHHHHHhHHhHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHH
Q 008613           56 MRARIDAQMNYEFNAAKMLKKQGNELYS----------EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL  125 (559)
Q Consensus        56 a~~~l~~~~~~~~~~a~~lk~~Gn~~~k----------~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~yl  125 (559)
                      +...++..++..+..++.+...|.+++.          .+.+++|+..|++||+++|.++.         +|+++|.+|.
T Consensus        16 A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~---------a~~~lG~~y~   86 (145)
T d1zu2a1          16 IRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE---------AVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhH---------HHhhHHHHHH
Confidence            3344444444455559999999999885          45568999999999999999865         9999999998


Q ss_pred             HcCC-----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008613          126 KTKQ-----------YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV  168 (559)
Q Consensus       126 klg~-----------y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~lg~~eeAi  168 (559)
                      .+|+           |++|+.+|.++++++|++..++..++.+....+.|.++.
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~  140 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY  140 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            8764           799999999999999999999999998887766666653

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=1.7e-09  Score=106.39  Aligned_cols=104  Identities=9%  Similarity=0.061  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---  147 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---  147 (559)
                      ++.+...|++|...++|++|++.|.+|+.+.....+   ......+|.++|.||.++|+|++|+..|++++++.+..   
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~---~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~  113 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN---EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF  113 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence            444555555555556666666666665555333221   11233455555666666666666666666555554433   


Q ss_pred             ---HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Q 008613          148 ---VKALYRRGQAYKD-IGRLEEAVSDLSNAHEV  177 (559)
Q Consensus       148 ---~kal~~rG~A~~~-lg~~eeAi~dlekAl~l  177 (559)
                         ..++.++|.+|.. ++++++|+..|++++.+
T Consensus       114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l  147 (290)
T d1qqea_         114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEW  147 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence               3455555555533 45566666666555554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=1.9e-08  Score=98.51  Aligned_cols=113  Identities=14%  Similarity=-0.020  Sum_probs=97.3

Q ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCC
Q 008613           67 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-TKQYDECIKVGSEVLAYDA  145 (559)
Q Consensus        67 ~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk-lg~y~eAi~~~~~AL~ldP  145 (559)
                      ....+..+.+.|++|.+.|+|++|+.+|.+++.+.+....   ......++.+++.+|.. +++|++|+..|.+++++.+
T Consensus        73 ~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_          73 EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ---FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc---chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            4556888999999999999999999999999999877644   33456688999998865 6999999999999998754


Q ss_pred             C------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 008613          146 K------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  182 (559)
Q Consensus       146 ~------~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~  182 (559)
                      .      ...++.++|.+|..+|+|++|+..|++++.+.+.+.
T Consensus       150 ~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         150 QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             hcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            3      256799999999999999999999999999988764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=2e-08  Score=99.83  Aligned_cols=128  Identities=10%  Similarity=-0.125  Sum_probs=97.1

Q ss_pred             HHHHHHHHHhHHhHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHH-------------
Q 008613           55 TMRARIDAQMNYEFNAAKML-KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS-------------  120 (559)
Q Consensus        55 aa~~~l~~~~~~~~~~a~~l-k~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nl-------------  120 (559)
                      .+.......+...+.....+ ...|..+...+++.+|+..|.+++.++|.+..         +|+++             
T Consensus       127 ~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~---------a~~~l~~~~~~~~~~~~A  197 (334)
T d1dcea1         127 RELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS---------SWHYRSCLLPQLHPQPDS  197 (334)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH---------HHHHHHHHHHHHSCCCCS
T ss_pred             HHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHhcCHHHH
Confidence            34444444444444444443 45677888888888888888888888777643         33333             


Q ss_pred             ---------------------------------------------------HHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008613          121 ---------------------------------------------------MSCYLKTKQYDECIKVGSEVLAYDAKNVK  149 (559)
Q Consensus       121 ---------------------------------------------------A~~ylklg~y~eAi~~~~~AL~ldP~~~k  149 (559)
                                                                         +.++...+++.+|+..+.++++.+|.+..
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  277 (334)
T d1dcea1         198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL  277 (334)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHH
Confidence                                                               44555556777788888888888999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613          150 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  191 (559)
Q Consensus       150 al~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a  191 (559)
                      +|+.+|.+|..+|++++|+.+|+++++++|.+...+..|...
T Consensus       278 ~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~  319 (334)
T d1dcea1         278 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK  319 (334)
T ss_dssp             HHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHH
Confidence            999999999999999999999999999999998888877554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=1.4e-06  Score=83.50  Aligned_cols=141  Identities=12%  Similarity=0.097  Sum_probs=111.0

Q ss_pred             HHHHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q 008613           25 CAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGI  104 (559)
Q Consensus        25 ~a~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~  104 (559)
                      ++.-.+..+++++......++....|..             .....+..+..+|.+++..|+|++|+..|.+++.+.+..
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~-------------~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~   84 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPG-------------WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH   84 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTT-------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCC-------------CcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence            3444567778888777777766665554             122235678889999999999999999999999987766


Q ss_pred             CCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008613          105 HSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--------NVKALYRRGQAYKDIGRLEEAVSDLSNAHE  176 (559)
Q Consensus       105 ~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~--------~~kal~~rG~A~~~lg~~eeAi~dlekAl~  176 (559)
                      ..   ......++++++.+|...+++..++..+.+++.+.+.        ....+..+|.++...|+++.|...|++++.
T Consensus        85 ~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~  161 (366)
T d1hz4a_          85 DV---WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE  161 (366)
T ss_dssp             TC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence            44   3445668889999999999999999999999876432        245778899999999999999999999999


Q ss_pred             hCCCC
Q 008613          177 VSPDD  181 (559)
Q Consensus       177 l~P~~  181 (559)
                      ..+..
T Consensus       162 ~~~~~  166 (366)
T d1hz4a_         162 VLSSY  166 (366)
T ss_dssp             HTTTS
T ss_pred             Hhhhh
Confidence            87653

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.8e-08  Score=106.89  Aligned_cols=122  Identities=14%  Similarity=-0.057  Sum_probs=77.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008613           77 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ  156 (559)
Q Consensus        77 ~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~  156 (559)
                      .+..+...+.|..|+..|.+++.+.|.+..         .+.++|.++.+.+++++|+..+.+++.++|  ..+++++|.
T Consensus        92 ~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~---------~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~  160 (497)
T d1ya0a1          92 SLFLEAASGFYTQLLQELCTVFNVDLPCRV---------KSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGD  160 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC----------------------------------------CCHHHHHHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCChhhHH---------HHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHH
Confidence            345555677788899989888888877765         899999999999999999999999998876  478999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchh
Q 008613          157 AYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  209 (559)
Q Consensus       157 A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i  209 (559)
                      ++...++|++|+.+|++|+.++|++..++..|+.+....++...+...|.+.+
T Consensus       161 l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral  213 (497)
T d1ya0a1         161 IARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI  213 (497)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888877766555555554

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.51  E-value=4.7e-07  Score=80.36  Aligned_cols=114  Identities=12%  Similarity=-0.017  Sum_probs=80.8

Q ss_pred             HHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC-
Q 008613           28 EQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-  106 (559)
Q Consensus        28 e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~-  106 (559)
                      ..+..+..++......++..+.++....      .........+..+.++|.+|++.|+|++|+..|.++|.+.+.... 
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~------~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~   91 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPE------EAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   91 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTT------SCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhh------hhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccc
Confidence            3445566666666665555443321000      000112334678899999999999999999999999998775332 


Q ss_pred             -chhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008613          107 -SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  147 (559)
Q Consensus       107 -~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~  147 (559)
                       .+.......+|+++|.||..+|+|++|+.+|++++++.|+.
T Consensus        92 ~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          92 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence             23344566789999999999999999999999999997644

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=7e-07  Score=85.73  Aligned_cols=104  Identities=11%  Similarity=0.011  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---  147 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~---  147 (559)
                      ++....+|.+++..|+|++|+.+|+++|.+.|....    .....+++++|.||...|+|++|+..|.+++++.+..   
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~----~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   87 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF----YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW   87 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCc----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcch
Confidence            555666899999999999999999999999887642    2345689999999999999999999999999876543   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 008613          148 ---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVS  178 (559)
Q Consensus       148 ---~kal~~rG~A~~~lg~~eeAi~dlekAl~l~  178 (559)
                         ..+++.++.+|...+++..|+..+.+++.+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          88 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               5788999999999999999999999999864

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.41  E-value=2.7e-08  Score=97.42  Aligned_cols=91  Identities=11%  Similarity=0.022  Sum_probs=81.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008613           78 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA  157 (559)
Q Consensus        78 Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A  157 (559)
                      +..+++.|++++|+..|.++|+.+|.++.         ++.+++.+|+..|+|++|+..|+++++++|++..++..++.+
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~---------ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~l   73 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDAS---------LRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL   73 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            45678899999999999999999999866         999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHh
Q 008613          158 YKDIGRLEEAVSDLSNAHEV  177 (559)
Q Consensus       158 ~~~lg~~eeAi~dlekAl~l  177 (559)
                      +...+..+++...+.+...+
T Consensus        74 l~a~~~~~~a~~~~~~~~~~   93 (264)
T d1zbpa1          74 VKAAQARKDFAQGAATAKVL   93 (264)
T ss_dssp             HHHHHHHHHHTTSCCCEECC
T ss_pred             HHhccccHHHHHHhhhhhcc
Confidence            98888888777666554433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.37  E-value=1.6e-07  Score=91.62  Aligned_cols=131  Identities=11%  Similarity=0.043  Sum_probs=107.7

Q ss_pred             HHHhhCCChHHHHHHHHHHHccCcHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCC
Q 008613           27 AEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS  106 (559)
Q Consensus        27 ~e~l~~~~pee~~~~~~~~~~~~pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~  106 (559)
                      .+.++.++.++......++....|.+                  +..+..+|..|+..|+|++|+..|+++++++|.+..
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d------------------~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~   65 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKD------------------ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   65 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTC------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCC------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH
Confidence            34556677777777777667777777                  999999999999999999999999999999888754


Q ss_pred             chhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 008613          107 SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL-AYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI  184 (559)
Q Consensus       107 ~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL-~ldP~~~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a  184 (559)
                               .+.+++.++...+.++++...+.+.. ..+|.....++.++.++...|++++|+..++++.++.|+.+..
T Consensus        66 ---------~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~  135 (264)
T d1zbpa1          66 ---------GASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL  135 (264)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred             ---------HHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence                     77888888887777777776655433 3457778889999999999999999999999999999987654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.35  E-value=2.1e-06  Score=73.70  Aligned_cols=84  Identities=11%  Similarity=0.127  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613          114 LACSLNSMSCYLKTK---QYDECIKVGSEVLAYDAKN-VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR  189 (559)
Q Consensus       114 ~~~~~nlA~~ylklg---~y~eAi~~~~~AL~ldP~~-~kal~~rG~A~~~lg~~eeAi~dlekAl~l~P~~~~a~~~L~  189 (559)
                      ....|+.|.|+.+..   +.+++|..++.+++.+|.+ ..++|.+|.+|..+|+|++|...++++|+++|+|..+.....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            347788888888765   4578999999999999977 479999999999999999999999999999999999999888


Q ss_pred             HHHHHHHh
Q 008613          190 DAKEILMK  197 (559)
Q Consensus       190 ~a~~~l~~  197 (559)
                      .+.+++.+
T Consensus       115 ~Ie~~~~k  122 (124)
T d2pqrb1         115 MVEDKIQK  122 (124)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            88887754

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.29  E-value=4.3e-06  Score=71.75  Aligned_cols=101  Identities=8%  Similarity=0.022  Sum_probs=76.2

Q ss_pred             cHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH
Q 008613           50 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRF---SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK  126 (559)
Q Consensus        50 pee~~aa~~~l~~~~~~~~~~a~~lk~~Gn~~~k~g~y---~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk  126 (559)
                      ++++....++....++..+. ++..++.|.++.+..+.   .++|..+.+++..+|.+.        ..|+|++|.+|.+
T Consensus        15 ~~el~~~~~q~~~e~~~~~s-~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~--------rd~lY~Lav~yyk   85 (124)
T d2pqrb1          15 PQQLEILRQQVVSEGGPTAT-IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR--------RECLYYLTIGCYK   85 (124)
T ss_dssp             HHHHHHHHHHHHHTTGGGSC-HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH--------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCC-cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhH--------HHHHHHHHHHHHH
Confidence            34444444444444332222 67888888888877554   689999999998866542        3599999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008613          127 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK  159 (559)
Q Consensus       127 lg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~  159 (559)
                      +|+|++|..+++++|+++|+|..+...+-.+..
T Consensus        86 lgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~  118 (124)
T d2pqrb1          86 LGEYSMAKRYVDTLFEHERNNKQVGALKSMVED  118 (124)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Confidence            999999999999999999999988766655543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.27  E-value=1.3e-06  Score=79.94  Aligned_cols=100  Identities=12%  Similarity=0.036  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHH
Q 008613          113 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN----------------------VKALYRRGQAYKDIGRLEEAVSD  170 (559)
Q Consensus       113 ~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~----------------------~kal~~rG~A~~~lg~~eeAi~d  170 (559)
                      ....++++|..+...|++++|+..|.+||.+.+..                      ..++.+++.++..+|+|++|+.+
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            34578899999999999999999999999987643                      26789999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCccchhhhh
Q 008613          171 LSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEI  212 (559)
Q Consensus       171 lekAl~l~P~~~~a~~~L~~a~~~l~~~~~~~~~~~~~i~e~  212 (559)
                      +++++.++|.+..++..+..+...+++..++...|+......
T Consensus        90 ~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L  131 (179)
T d2ff4a2          90 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL  131 (179)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988887777666654433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=5.5e-06  Score=81.07  Aligned_cols=125  Identities=6%  Similarity=-0.155  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008613           69 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  148 (559)
Q Consensus        69 ~~a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~  148 (559)
                      .....+...+..+...|++++|...|.++|...|.+..        .+|...+.+..+.++++.|...|.++++..|...
T Consensus        97 ~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~--------~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~  168 (308)
T d2onda1          97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH  168 (308)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT
T ss_pred             CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Confidence            34556778888999999999999999999998777642        3678888899999999999999999999999999


Q ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 008613          149 KALYRRGQAYK-DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  201 (559)
Q Consensus       149 kal~~rG~A~~-~lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~l~~~~~~  201 (559)
                      ..|...+.... ..++.+.|...|++++..+|++..++..+.......++...+
T Consensus       169 ~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~a  222 (308)
T d2onda1         169 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT  222 (308)
T ss_dssp             HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHH
Confidence            98888887654 468899999999999999999998888877776665544433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=1.6e-05  Score=77.58  Aligned_cols=116  Identities=6%  Similarity=-0.097  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHH
Q 008613           72 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-TKQYDECIKVGSEVLAYDAKNVKA  150 (559)
Q Consensus        72 ~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk-lg~y~eAi~~~~~AL~ldP~~~ka  150 (559)
                      ..+...++...+.++++.|...|.+++...|....         .|...+..... .++++.|...|+++++.+|+++..
T Consensus       135 ~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~---------~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~  205 (308)
T d2onda1         135 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH---------VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY  205 (308)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH---------HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHH
Confidence            45778888999999999999999999999888765         67777766544 589999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHH
Q 008613          151 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD----GTIADVLRDAKEILM  196 (559)
Q Consensus       151 l~~rG~A~~~lg~~eeAi~dlekAl~l~P~~----~~a~~~L~~a~~~l~  196 (559)
                      +...+..+...|+++.|...|++++...|.+    ..++......+...+
T Consensus       206 w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G  255 (308)
T d2onda1         206 VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG  255 (308)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999988754    346665555554444

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.69  E-value=0.00021  Score=67.25  Aligned_cols=106  Identities=16%  Similarity=0.113  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCC
Q 008613           71 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVLAYDAK  146 (559)
Q Consensus        71 a~~lk~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk----lg~y~eAi~~~~~AL~ldP~  146 (559)
                      ++.+..+|..++.+++|.+|+++|.++.+.  .+.         .+++++|.+|..    .+++..|+.++..+...  .
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~---------~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~   68 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KEN---------SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--N   68 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCH---------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCH---------HHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--c
Confidence            678899999999999999999999999875  332         389999999998    67999999999998854  5


Q ss_pred             CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008613          147 NVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  191 (559)
Q Consensus       147 ~~kal~~rG~A~~~----lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a  191 (559)
                      ++.+.+.+|..+..    ..+++.|+..|+++....+  ..+...+...
T Consensus        69 ~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~  115 (265)
T d1ouva_          69 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGI  115 (265)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred             ccchhhccccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhccc
Confidence            88899999998876    5688999999999987644  3444444433

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.26  E-value=0.0012  Score=56.03  Aligned_cols=83  Identities=12%  Similarity=-0.007  Sum_probs=69.8

Q ss_pred             HcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008613           83 SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVLAYDAKNVKALYRRGQAY  158 (559)
Q Consensus        83 k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk----lg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~  158 (559)
                      ...++++|+..|.++.+.  .++         .+++++|.+|+.    ..++++|+++|.++.+.  .++.+.+++|..|
T Consensus        35 ~~~~~~~a~~~~~~aa~~--g~~---------~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y  101 (133)
T d1klxa_          35 SQINKQKLFQYLSKACEL--NSG---------NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQ  101 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHT--TCH---------HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHhhhhcc--cch---------hhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHH
Confidence            456889999999999875  332         378899999987    46799999999999875  6899999999999


Q ss_pred             HH----cCCHHHHHHHHHHHHHhC
Q 008613          159 KD----IGRLEEAVSDLSNAHEVS  178 (559)
Q Consensus       159 ~~----lg~~eeAi~dlekAl~l~  178 (559)
                      ..    ..++++|+.+|+++.++.
T Consensus       102 ~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         102 YAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HcCCccCCCHHHHHHHHHHHHHCC
Confidence            87    568999999999998864

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.25  E-value=0.00089  Score=62.69  Aligned_cols=104  Identities=15%  Similarity=0.156  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 008613           71 AKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVLA  142 (559)
Q Consensus        71 a~~lk~~Gn~~~k----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylk----lg~y~eAi~~~~~AL~  142 (559)
                      ...+..+|..+..    ..+...+...|.++.+.  .+         ..+++++|.+|..    .+++++|+.+|.++.+
T Consensus       142 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~---------~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~  210 (265)
T d1ouva_         142 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KD---------SPGCFNAGNMYHHGEGATKNFKEALARYSKACE  210 (265)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC---------HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhccCCCcccccccchhhhhccccc--cc---------cccccchhhhcccCcccccchhhhhhhHhhhhc
Confidence            3345556666664    44555666666666543  22         2378888888887    6688888888888887


Q ss_pred             cCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008613          143 YDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLR  189 (559)
Q Consensus       143 ldP~~~kal~~rG~A~~~----lg~~eeAi~dlekAl~l~P~~~~a~~~L~  189 (559)
                      .  +++.+++++|.+|..    .+++++|+.+|++|..+.  +..+...|.
T Consensus       211 ~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g--~~~A~~~l~  257 (265)
T d1ouva_         211 L--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG--AKGACDILK  257 (265)
T ss_dssp             T--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT--CHHHHHHHH
T ss_pred             c--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc--CHHHHHHHH
Confidence            6  478888888888875    347888888888888774  334444443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.99  E-value=0.0034  Score=53.01  Aligned_cols=93  Identities=16%  Similarity=0.057  Sum_probs=75.5

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----
Q 008613           85 GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD----  160 (559)
Q Consensus        85 g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG~A~~~----  160 (559)
                      .++++|+.+|.++.+..  ++.         ++++++..  ...++++|+..+.++.+.  +++.+++++|..|..    
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~---------a~~~l~~~--~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~   71 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMF---------GCLSLVSN--SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYV   71 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTT---------HHHHHHTC--TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSS
T ss_pred             cCHHHHHHHHHHHHHCC--Chh---------hhhhhccc--cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhcccc
Confidence            57899999999998864  333         66677643  457899999999999865  689999999999987    


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008613          161 IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  194 (559)
Q Consensus       161 lg~~eeAi~dlekAl~l~P~~~~a~~~L~~a~~~  194 (559)
                      ..++++|+.+|+++.+.  .++.+...|+.+...
T Consensus        72 ~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          72 KKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHhhhhcc--CcchHHHHHHHHHHc
Confidence            56799999999999876  567788888777544

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=80.76  E-value=3.5  Score=40.61  Aligned_cols=91  Identities=12%  Similarity=-0.080  Sum_probs=61.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008613           76 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG  155 (559)
Q Consensus        76 ~~Gn~~~k~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~nlA~~ylklg~y~eAi~~~~~AL~ldP~~~kal~~rG  155 (559)
                      ..+..++..+....|...+..........          .....++...+..+++..++..+...-.-.....+..|++|
T Consensus       257 ~~a~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~g  326 (450)
T d1qsaa1         257 IVAWRLMGNDVTDEQAKWRDDAIMRSQST----------SLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQA  326 (450)
T ss_dssp             HHHHTSCSTTCCHHHHHHHHHHHHTCCCH----------HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHH
T ss_pred             HHHHHHHHcCchHHHHHHHHhhcccccch----------HHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHH
Confidence            33444555666777777776665432211          11222333345678999988887765433334588999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHH
Q 008613          156 QAYKDIGRLEEAVSDLSNAHE  176 (559)
Q Consensus       156 ~A~~~lg~~eeAi~dlekAl~  176 (559)
                      .++..+|+.++|...|+.+..
T Consensus       327 Ra~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         327 DLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHcCChhhHHHHHHHHhc
Confidence            999999999999999998864