Citrus Sinensis ID: 008633
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 558 | 2.2.26 [Sep-21-2011] | |||||||
| P0C8R0 | 546 | Putative pentatricopeptid | yes | no | 0.924 | 0.945 | 0.598 | 0.0 | |
| Q9LZP3 | 599 | Pentatricopeptide repeat- | no | no | 0.722 | 0.672 | 0.259 | 1e-44 | |
| Q9FH87 | 637 | Putative pentatricopeptid | no | no | 0.749 | 0.656 | 0.28 | 4e-44 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.684 | 0.506 | 0.275 | 8e-44 | |
| Q9LEQ7 | 598 | Pentatricopeptide repeat- | no | no | 0.722 | 0.673 | 0.257 | 1e-43 | |
| Q9LN22 | 537 | Pentatricopeptide repeat- | no | no | 0.698 | 0.726 | 0.255 | 2e-43 | |
| Q3EAF8 | 599 | Pentatricopeptide repeat- | no | no | 0.722 | 0.672 | 0.254 | 1e-42 | |
| P0C8A0 | 638 | Pentatricopeptide repeat- | no | no | 0.845 | 0.739 | 0.262 | 5e-42 | |
| Q9CAM8 | 629 | Pentatricopeptide repeat- | no | no | 0.629 | 0.558 | 0.288 | 5e-41 | |
| Q9LFQ4 | 572 | Pentatricopeptide repeat- | no | no | 0.784 | 0.765 | 0.277 | 5e-41 |
| >sp|P0C8R0|PP416_ARATH Putative pentatricopeptide repeat-containing protein At5g43820 OS=Arabidopsis thaliana GN=At5g43820 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/525 (59%), Positives = 401/525 (76%), Gaps = 9/525 (1%)
Query: 36 YNELL--SNQKKNMSSLDEHHVLKELSDLFQISSHNSFPNVYKESRSNSVKRIDSSRAVD 93
YN L +++ N +DE +VL ELS L ISS+ + + S N V A+D
Sbjct: 29 YNRTLCTASESLNHGVVDESYVLAELSSLLPISSNKTSVSKEDSSSKNQV-------AID 81
Query: 94 EFLLPEERLRGVFLQKLKGKGVIEDALWNVNVDLSLDVVGKVVNRGNLSGEAMVLFFNWA 153
FL E++LRGVFLQKLKGK I+ +L ++ + LS+D+V V+NRGNLSGEAMV FF+WA
Sbjct: 82 SFLSAEDKLRGVFLQKLKGKSAIQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWA 141
Query: 154 IKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQ 213
++ P V KDV SY+VI++ALGRRK F FM +VL M EGVNPDLE L+I MDSF+R
Sbjct: 142 VREPGVTKDVGSYSVILRALGRRKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHY 201
Query: 214 VYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIV 273
V +AI++ E FG+K ES N +L CLC+R HV AA S+FN+ KG + F+ +YNI+
Sbjct: 202 VRRAIELFEESESFGVKCSTESFNALLRCLCERSHVSAAKSVFNAKKGNIPFDSCSYNIM 261
Query: 274 ISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGC 333
ISGWSKLG+V EME+VLKE+V GF PD L++S LIEGLGR GRI+D++E+FD +K KG
Sbjct: 262 ISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGN 321
Query: 334 GPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALE 393
PD N YNA+I N+IS DFDE M+YY+ M CEPN++TY++L+SGL+K RKV+DALE
Sbjct: 322 VPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALE 381
Query: 394 VFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLS 453
+FEEML RG++P+TG +TSFL+PLCSYGPPHAAM++Y+K+RK GC++S +AYKLLL+RLS
Sbjct: 382 IFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLS 441
Query: 454 GFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRL 513
FGKCGMLL++W EMQESGYPSD E+YEY++ GLC IG LENAVLVMEE++RKGFCP+R
Sbjct: 442 RFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGFCPNRF 501
Query: 514 VYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRLWRSKGWHF 558
VYS+LS+KL+ASNK E AY LF KIK AR + AR WRS GWHF
Sbjct: 502 VYSRLSSKLMASNKTELAYKLFLKIKKARATENARSFWRSNGWHF 546
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/404 (25%), Positives = 204/404 (50%), Gaps = 1/404 (0%)
Query: 116 IEDALWNVNVDLSLDVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGR 175
+E L + +DLS D++ +V+ R + + FF WA + A D ++YN ++ L +
Sbjct: 148 MEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAK 207
Query: 176 RKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAES 235
+ F+ M +VL +M +G+ +ET +I M +F A + KA+ + ++ + K E+
Sbjct: 208 TRQFETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVET 266
Query: 236 LNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA 295
+N +L L + A LF+ +K + N+MTY ++++GW ++ ++E R+ +++
Sbjct: 267 INCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMID 326
Query: 296 EGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDE 355
+G PD + + ++EGL R+ + DAI++F MK KG P+ +Y +I ++ +
Sbjct: 327 QGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMET 386
Query: 356 CMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLE 415
++Y+ M +P+ YT LI+G +K+ E+ +EM ++G P T + ++
Sbjct: 387 AIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIK 446
Query: 416 PLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPS 475
+ + P A +Y K + + S+ + ++++ M +W EM + G
Sbjct: 447 LMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICP 506
Query: 476 DGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLS 519
D Y +I GL G+ A +EE L KG + Y+K +
Sbjct: 507 DDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFA 550
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (455), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 119/425 (28%), Positives = 210/425 (49%), Gaps = 7/425 (1%)
Query: 116 IEDALWNVNVDLSLDVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGR 175
+E AL V+L ++ +V+NR +G FF WA K P ++ Y +VK L +
Sbjct: 100 LELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSK 159
Query: 176 RKFFDFMCNVLSDMAKEGVNPDL---ETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD 232
+ F + ++ +M KE NP L E +++ F A V KAI++L + FG + D
Sbjct: 160 MRQFGAVWGLIEEMRKE--NPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPD 217
Query: 233 AESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKE 292
+L LC+ V A+ LF M+ + N+ + ++ GW ++G+++E + VL +
Sbjct: 218 EYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQ 277
Query: 293 IVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGD 352
+ GF PD + ++ L+ G AG++ DA ++ M+ +G P+ N Y +I V
Sbjct: 278 MNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDR 337
Query: 353 FDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITS 412
+E MK + M Y CE ++ TYT L+SG K K+ V ++M+ +G++PS T
Sbjct: 338 MEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMH 397
Query: 413 FLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESG 472
+ + + +K R++ + Y +++R G+ + LW+EM+E+G
Sbjct: 398 IMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENG 457
Query: 473 YPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKG-FCPSRLVYSK-LSNKLLASNKLES 530
+ + +I GL + G L A +E + +G F S+ K L N +L KLE
Sbjct: 458 LSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGLFSVSQYGTLKLLLNTVLKDKKLEM 517
Query: 531 AYNLF 535
A +++
Sbjct: 518 AKDVW 522
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 178 bits (452), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 107/389 (27%), Positives = 190/389 (48%), Gaps = 7/389 (1%)
Query: 152 WAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRA 211
W IK DV ++NV++KAL R +L DM G+ PD +T + VM +I
Sbjct: 183 WGIK-----PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEE 237
Query: 212 GQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLF--NVMT 269
G + A+++ ++ +FG + S+NV++ C+ V A + M + F + T
Sbjct: 238 GDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYT 297
Query: 270 YNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMK 329
+N +++G K G V ++ ++ EG+ PD T++ +I GL + G + +A+EV D M
Sbjct: 298 FNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMI 357
Query: 330 EKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVA 389
+ C P+T YN +IS +E + + ++S P++ T+ LI GL +R
Sbjct: 358 TRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHR 417
Query: 390 DALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLL 449
A+E+FEEM +G P T ++ LCS G A+ M K+ GC S+ Y L+
Sbjct: 418 VAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLI 477
Query: 450 RRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFC 509
K +++ EM+ G + Y +I GLC ++E+A +M++ + +G
Sbjct: 478 DGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQK 537
Query: 510 PSRLVYSKLSNKLLASNKLESAYNLFRKI 538
P + Y+ L ++ A ++ + +
Sbjct: 538 PDKYTYNSLLTHFCRGGDIKKAADIVQAM 566
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/404 (25%), Positives = 203/404 (50%), Gaps = 1/404 (0%)
Query: 116 IEDALWNVNVDLSLDVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGR 175
+E L + +DLS D++ +V+ R + + FF WA + A D ++YN ++ L +
Sbjct: 147 MEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAK 206
Query: 176 RKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAES 235
+ F+ M +VL +M +G+ +ET +I M +F A + KA+ + ++ + K E+
Sbjct: 207 TRQFETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVET 265
Query: 236 LNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA 295
+N +L L + A LF+ +K + N+MTY ++++GW ++ ++E R+ +++
Sbjct: 266 INCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMID 325
Query: 296 EGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDE 355
G PD + + ++EGL R+ + DAI++F MK KG P+ +Y +I ++ +
Sbjct: 326 HGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMET 385
Query: 356 CMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLE 415
++Y+ M +P+ YT LI+G +K+ E+ +EM ++G P T + ++
Sbjct: 386 AIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIK 445
Query: 416 PLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPS 475
+ + P +Y K + + S+ + ++++ M +W EM + G
Sbjct: 446 LMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICP 505
Query: 476 DGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLS 519
D Y +I GL + G+ A +EE L KG + Y+K +
Sbjct: 506 DDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFA 549
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 187/392 (47%), Gaps = 2/392 (0%)
Query: 149 FFNWAIKHPNV-AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDS 207
FFNWA + K YN ++ G+ + FD +++ M V +ET +I++
Sbjct: 136 FFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRR 195
Query: 208 FIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNV 267
++RAG +A+ R+ED+G D + ++V+ L ++ A S F+S+K + +V
Sbjct: 196 YVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDV 255
Query: 268 MTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDT 327
+ Y ++ GW + G++ E E+V KE+ G P+ T+S +I+ L R G+I A +VF
Sbjct: 256 IVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFAD 315
Query: 328 MKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRK 387
M + GC P+ +N ++ ++ G ++ ++ Y M CEP+ TY LI +
Sbjct: 316 MLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDEN 375
Query: 388 VADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKL 447
+ +A++V M+ + + T + + + A MY K + C+ + Y +
Sbjct: 376 LENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNI 435
Query: 448 LLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESL-RK 506
L+R G M+L + EM + + Y ++ C +G NA + +E + K
Sbjct: 436 LMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEK 495
Query: 507 GFCPSRLVYSKLSNKLLASNKLESAYNLFRKI 538
PS +Y + +L + +L+ L K+
Sbjct: 496 CLTPSLSLYEMVLAQLRRAGQLKKHEELVEKM 527
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/404 (25%), Positives = 202/404 (50%), Gaps = 1/404 (0%)
Query: 116 IEDALWNVNVDLSLDVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGR 175
+E L + +DLS D++ +V+ R + + FF WA + A ++YN ++ L +
Sbjct: 148 MEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAK 207
Query: 176 RKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAES 235
+ F+ M +VL +M +G+ +ET +I M +F A + KA+ + ++ + K E+
Sbjct: 208 TRQFETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVET 266
Query: 236 LNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA 295
+N +L L + A LF+ +K + N+MTY ++++GW ++ ++E R+ +++
Sbjct: 267 INCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMID 326
Query: 296 EGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDE 355
G PD + + ++EGL R+ + DAI++F MK KG P+ +Y +I ++ +
Sbjct: 327 HGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMET 386
Query: 356 CMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLE 415
++Y+ M +P+ YT LI+G +K+ E+ +EM ++G P T + ++
Sbjct: 387 AIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIK 446
Query: 416 PLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPS 475
+ + P +Y K + + S+ + ++++ M +W EM + G
Sbjct: 447 LMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICP 506
Query: 476 DGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLS 519
D Y +I GL + G+ A +EE L KG + Y+K +
Sbjct: 507 DDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFA 550
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (436), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 127/484 (26%), Positives = 222/484 (45%), Gaps = 12/484 (2%)
Query: 63 FQISS--HNSFPNVYKESRSNSVKRIDSSRAVDEFLLPEERLRGVFLQKLKGKGVIEDAL 120
F IS +N F V R N V + + DEF E++ + +E AL
Sbjct: 31 FHISRVLNNDF--VESTERKNGVGLVCPEKHEDEFAGEVEKIYRILRNHHSRVPKLELAL 88
Query: 121 WNVNVDLSLDVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFD 180
+DL ++ +V++R +G FF WA K P + +V L + + F
Sbjct: 89 NESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFG 148
Query: 181 FMCNVLSDMAKEGVNPDL---ETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLN 237
+ ++ +M K NP+L E ++M F A V KA+++L + +GL+ D
Sbjct: 149 AVWGLIEEMRK--TNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFG 206
Query: 238 VVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEG 297
+L LC+ V AS +F M+ K N+ + ++ GW + G+++E + VL ++ G
Sbjct: 207 CLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAG 266
Query: 298 FSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGD-FDEC 356
PD + F+ L+ G AG++ DA ++ + M+++G P+ N Y +I DE
Sbjct: 267 LEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEA 326
Query: 357 MKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEP 416
M+ + M Y CE ++ TYT LISG K + V ++M +G++PS T +
Sbjct: 327 MRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVA 386
Query: 417 LCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSD 476
+ + +K ++ GC L Y +++R G+ + LW+EM+ +G
Sbjct: 387 HEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPG 446
Query: 477 GEIYEYVIAGLCNIGQLENAVLVMEESLRKGF--CPSRLVYSKLSNKLLASNKLESAYNL 534
+ + +I G + G L A +E + +G P L N L+ +KLE A ++
Sbjct: 447 VDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMAKDV 506
Query: 535 FRKI 538
+ I
Sbjct: 507 WSCI 510
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 187/357 (52%), Gaps = 6/357 (1%)
Query: 185 VLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLC 244
++ M + G PDL T V++ + G + A+ +L ++E +K + N ++ LC
Sbjct: 210 LVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLC 269
Query: 245 QRLHVGAASSLFNSMKGK-VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSL 303
+ HV A LF M+ K + NV+TYN +I+ G+ + R+L ++ + +P+ +
Sbjct: 270 KYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVV 329
Query: 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGM 363
TF+ LI+ + G++ +A ++ + M ++ PDT YN +I+ + DE + +K M
Sbjct: 330 TFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFM 389
Query: 364 SSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPP 423
S +C PN+ TY LI+G K ++V D +E+F EM RG+V +T T T+ ++ G
Sbjct: 390 VSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDC 449
Query: 424 HAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYV 483
+A M++K+ + Y +LL L +GK L ++ +Q+S + IY +
Sbjct: 450 DSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTM 509
Query: 484 IAGLCNIGQLENA-VLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIK 539
I G+C G++ A L S++ P + Y+ + + L + L+ A +LFRK+K
Sbjct: 510 IEGMCKAGKVGEAWDLFCSLSIK----PDVVTYNTMISGLCSKRLLQEADDLFRKMK 562
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 128/461 (27%), Positives = 215/461 (46%), Gaps = 23/461 (4%)
Query: 116 IEDALWNVNVDLSLDVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGR 175
+ + L +V S ++V ++++R E FF WA K + V+ Y+ ++ LG+
Sbjct: 114 LRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYVRSVREYHSMISILGK 173
Query: 176 RKFFDFMCNVLSDMAKEGVNPDL---ETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD 232
+ FD ++ +M K +P L +TL I++ + V KAI + F L+
Sbjct: 174 MRKFDTAWTLIDEMRK--FSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYKRFKLEMG 231
Query: 233 AESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSK-LGQVVEMERVLK 291
+ +L LC+ +V A L K K F+ ++NIV++GW +G E ERV
Sbjct: 232 IDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGWCNVIGSPREAERVWM 291
Query: 292 EIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVG 351
E+ G D +++S +I + G ++ +++FD MK++ PD YNAV+
Sbjct: 292 EMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVVHALAKAS 351
Query: 352 DFDECMKYYKGMSSYN-CEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTI 410
E K M EPN+ TY LI L K+RK +A +VF+EML++G+ P+ T
Sbjct: 352 FVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTY 411
Query: 411 TSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQE 470
+F+ L + + K RK+GC+ ++ Y +L+R+L + +L LW EM+E
Sbjct: 412 HAFMRILRT---GEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKE 468
Query: 471 SGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSR----LVYSKLSNKLLASN 526
D Y +I GL G++E A +E KG P+ ++ S S K A
Sbjct: 469 KTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMRPNENVEDMIQSWFSGKQYAEQ 528
Query: 527 KLESAYNLFRKIKIAR---------QNDYARRLWRSKGWHF 558
++ + K I + Q R++ R G+ F
Sbjct: 529 RITDSKGEVNKGAIVKKSEREKNFLQQPEVRKVVREHGYSF 569
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 558 | ||||||
| 147865347 | 561 | hypothetical protein VITISV_018999 [Viti | 0.992 | 0.987 | 0.657 | 0.0 | |
| 297745567 | 520 | unnamed protein product [Vitis vinifera] | 0.930 | 0.998 | 0.664 | 0.0 | |
| 224085974 | 563 | predicted protein [Populus trichocarpa] | 0.965 | 0.957 | 0.628 | 0.0 | |
| 240256396 | 546 | pentatricopeptide repeat-containing prot | 0.924 | 0.945 | 0.598 | 0.0 | |
| 357454671 | 527 | hypothetical protein MTR_2g100200 [Medic | 0.935 | 0.990 | 0.591 | 0.0 | |
| 449455613 | 572 | PREDICTED: putative pentatricopeptide re | 0.978 | 0.954 | 0.577 | 1e-180 | |
| 10177952 | 680 | unnamed protein product [Arabidopsis tha | 0.854 | 0.701 | 0.594 | 1e-172 | |
| 297795031 | 675 | pentatricopeptide repeat-containing prot | 0.704 | 0.582 | 0.638 | 1e-167 | |
| 356557957 | 505 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.892 | 0.986 | 0.543 | 1e-166 | |
| 222622668 | 540 | hypothetical protein OsJ_06387 [Oryza sa | 0.820 | 0.848 | 0.503 | 1e-136 |
| >gi|147865347|emb|CAN84084.1| hypothetical protein VITISV_018999 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/558 (65%), Positives = 431/558 (77%), Gaps = 4/558 (0%)
Query: 2 AFLSRFYRTRYPLSSLSSSFSLFSFST-SVRSNLSYNELLSNQKKNMSSLDEHHVLKELS 60
FLSRF RTRY L SS SLF FST V SN +E NQ K S+ +E VL +LS
Sbjct: 7 GFLSRFSRTRYHTRYLPSSVSLFQFSTLQVTSNPLMDEPTDNQIKRPSNFNERDVLYQLS 66
Query: 61 DLFQISSHNSFPNVYKESRSNSVKRIDSSRAVDEFLLPEERLRGVFLQKLKGKGVIEDAL 120
L I + S + E NS K +RAVD FL P E+LRGVF+Q+L+GK IE AL
Sbjct: 67 GLLPICCNTSISKPFTE---NSPKEQLKTRAVDGFLSPGEKLRGVFIQRLRGKAAIELAL 123
Query: 121 WNVNVDLSLDVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFD 180
NV +DL++D+V +V NRGNL GEAMV FFNWA+K P + KDV +YNVI+KALGRRKF +
Sbjct: 124 TNVGIDLTIDIVSEVXNRGNLGGEAMVXFFNWAVKQPTIPKDVDTYNVIIKALGRRKFIE 183
Query: 181 FMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240
F VL DM +G++P+ ETLSIVMDSFI+A QV KAI+M LE+FG K D ESLNV+L
Sbjct: 184 FXVXVLKDMHIQGISPNYETLSIVMDSFIKARQVSKAIEMFRNLEEFGGKCDTESLNVLL 243
Query: 241 WCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSP 300
CLCQR HVGAA+ FN+MKG + FN MTYNI+I GWSK G++ EMER LK +VA+GFSP
Sbjct: 244 QCLCQRSHVGAANLFFNAMKGGIPFNCMTYNIIIGGWSKYGKIGEMERCLKAMVADGFSP 303
Query: 301 DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYY 360
+ LTFS LIEGLGRAGRIDDA+EVF M+E GC P+ YNA+ISN+IS DFDEC+KYY
Sbjct: 304 NCLTFSHLIEGLGRAGRIDDAVEVFHHMEETGCVPNACVYNALISNFISTRDFDECLKYY 363
Query: 361 KGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSY 420
M S NC+PNMDTYT+LI LK+RKVADALE+ +EM+ RG++P+TG ITSF+EPLC Y
Sbjct: 364 NFMVSSNCDPNMDTYTKLIVAFLKARKVADALEMLDEMVGRGMIPTTGAITSFIEPLCQY 423
Query: 421 GPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIY 480
GPPHAAMM+YKKARKVGC++SL+AYKLLL RLS FGKCGMLL+LW EMQESGY SD E+Y
Sbjct: 424 GPPHAAMMIYKKARKVGCRISLSAYKLLLMRLSRFGKCGMLLNLWDEMQESGYSSDTEVY 483
Query: 481 EYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKI 540
EYVI GLCNIGQL+ AVLVMEESL KGFCPSRL+ SKL+NKLLASNK+E AY LF KIK
Sbjct: 484 EYVINGLCNIGQLDTAVLVMEESLXKGFCPSRLIRSKLNNKLLASNKVEMAYKLFLKIKX 543
Query: 541 ARQNDYARRLWRSKGWHF 558
ARQND ARR WR GWHF
Sbjct: 544 ARQNDNARRFWRGNGWHF 561
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745567|emb|CBI40732.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/522 (66%), Positives = 414/522 (79%), Gaps = 3/522 (0%)
Query: 37 NELLSNQKKNMSSLDEHHVLKELSDLFQISSHNSFPNVYKESRSNSVKRIDSSRAVDEFL 96
+E NQ K S+ +E VL +LS L I + S + E NS K +RAVD FL
Sbjct: 2 DEPTDNQIKRPSNFNERDVLYQLSGLLPICCNTSISKPFTE---NSPKEQLKTRAVDGFL 58
Query: 97 LPEERLRGVFLQKLKGKGVIEDALWNVNVDLSLDVVGKVVNRGNLSGEAMVLFFNWAIKH 156
P E+LRGVF+Q+L+GK IE AL NV +DL++D+V +V+NRGNL GEAMV+FFNWA+K
Sbjct: 59 SPGEKLRGVFIQRLRGKAAIELALTNVGIDLTIDIVSEVINRGNLGGEAMVIFFNWAVKQ 118
Query: 157 PNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYK 216
P + KDV +YNVI+KALGRRKF +F+ VL DM +G++P+ ETLSIVMDSFI+A QV K
Sbjct: 119 PTIPKDVDTYNVIIKALGRRKFIEFVVKVLKDMHIQGISPNYETLSIVMDSFIKARQVSK 178
Query: 217 AIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISG 276
AI+M LE+FG K D ESLNV+L CLCQR HVGAA+ FN+MKG + FN MTYNI+I G
Sbjct: 179 AIEMFRNLEEFGGKCDTESLNVLLQCLCQRSHVGAANLFFNAMKGGIPFNCMTYNIIIGG 238
Query: 277 WSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPD 336
WSK G++ EMER LK +VA+GFSP+ LTFS LIEGLGRAGRIDDA+EVF M+E GC P+
Sbjct: 239 WSKYGKIGEMERCLKAMVADGFSPNCLTFSHLIEGLGRAGRIDDAVEVFHHMEETGCVPN 298
Query: 337 TNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFE 396
YNA+ISN+IS DFDEC+KYY M S NC+PNMDTYT+LI LK+RKVADALE+ +
Sbjct: 299 ACVYNALISNFISTRDFDECLKYYNFMVSSNCDPNMDTYTKLIVAFLKARKVADALEMLD 358
Query: 397 EMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFG 456
EM+ RG++P+TG ITSF+EPLC YGPPHAAMM+YKKARKVGC++SL+AYKLLL RLS FG
Sbjct: 359 EMVGRGMIPTTGAITSFIEPLCQYGPPHAAMMIYKKARKVGCRISLSAYKLLLMRLSRFG 418
Query: 457 KCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYS 516
KCGMLL+LW EMQESGY SD E+YEYVI GLCNIGQL+ AVLVMEESL KGFCPSRL+ S
Sbjct: 419 KCGMLLNLWDEMQESGYSSDTEVYEYVINGLCNIGQLDTAVLVMEESLHKGFCPSRLIRS 478
Query: 517 KLSNKLLASNKLESAYNLFRKIKIARQNDYARRLWRSKGWHF 558
KL+NKLLASNK+E AY LF KIKIARQND ARR WR GWHF
Sbjct: 479 KLNNKLLASNKVEMAYKLFLKIKIARQNDNARRFWRGNGWHF 520
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224085974|ref|XP_002307761.1| predicted protein [Populus trichocarpa] gi|222857210|gb|EEE94757.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/557 (62%), Positives = 434/557 (77%), Gaps = 18/557 (3%)
Query: 4 LSRFYRTRYPLSSLSSSFSLFSFSTSVRS-NLSYNELLSNQKKNMSSLDEHHVLKELSDL 62
L R+ P S+L F+TS + L YN L E +VL ELS+L
Sbjct: 23 LPHLLRSSIPFSTLDPP----QFATSQDNIKLQYN------------LGEDYVLNELSNL 66
Query: 63 FQISSHNSFPNVYKESRSNSVKRIDSSRAVDEFLLPEERLRGVFLQKLKGKGVIEDALWN 122
IS P+ Y RS S K+++ D FL PEE+LRGVF+QK+KGK IE AL
Sbjct: 67 LPISPKPPIPHPYNHDRSISNKQVEIRPVFDRFLSPEEKLRGVFVQKIKGKSGIERALTE 126
Query: 123 VNVDLSLDVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFM 182
+VDLSLDVV +V+NRGNL GEAM++FFNWAIK P ++KDV SYNV+++ALGRRKF DFM
Sbjct: 127 CSVDLSLDVVAEVLNRGNLGGEAMIMFFNWAIKQPMISKDVDSYNVVIRALGRRKFIDFM 186
Query: 183 CNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLED-FGLKFDAESLNVVLW 241
L ++ EGV+ + ET SIV+DS +RA +VYKAIQM G LE+ FG + DAESLNV+L
Sbjct: 187 VKFLHELRVEGVSMNSETFSIVIDSLVRARRVYKAIQMFGNLEEEFGFERDAESLNVLLQ 246
Query: 242 CLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD 301
CLC+R HVGAA+S FNS+KGK+ FN MTYN++I GWSK G+V EM+RV +E+ +GFSPD
Sbjct: 247 CLCRRSHVGAANSYFNSVKGKIPFNCMTYNVIIGGWSKFGRVSEMQRVFEEMEEDGFSPD 306
Query: 302 SLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYK 361
L+FS+L+EGLGRAG+I+DA+ +F +M+EKGC PDTN YNA+ISN+ISVG+FDECMKYY+
Sbjct: 307 CLSFSYLLEGLGRAGKIEDAVMIFGSMEEKGCVPDTNVYNAMISNFISVGNFDECMKYYR 366
Query: 362 GMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYG 421
+ S NC+PN+DTYTR+ISGL+K+ KVADALE+F+EMLDRG+V TGT+TSF+EPLCS+G
Sbjct: 367 CLLSKNCDPNIDTYTRMISGLIKASKVADALEMFDEMLDRGMVTKTGTVTSFIEPLCSFG 426
Query: 422 PPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYE 481
PPHAAM++Y KARKVGCK+SL+AYKLLL RLS FGKCGM+L +W EMQESGY SD E+YE
Sbjct: 427 PPHAAMVIYTKARKVGCKISLSAYKLLLMRLSRFGKCGMMLKIWDEMQESGYSSDMEVYE 486
Query: 482 YVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIA 541
Y+I+GLCNIGQ ENAVLVMEES+RKGFCPSR + SKL+NKLLASNK+E AY LF KIK A
Sbjct: 487 YLISGLCNIGQFENAVLVMEESMRKGFCPSRFICSKLNNKLLASNKVERAYRLFLKIKHA 546
Query: 542 RQNDYARRLWRSKGWHF 558
R ++ ARR WRS GWHF
Sbjct: 547 RHSENARRCWRSNGWHF 563
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240256396|ref|NP_199195.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635652|sp|P0C8R0.1|PP416_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At5g43820 gi|332007631|gb|AED95014.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/525 (59%), Positives = 401/525 (76%), Gaps = 9/525 (1%)
Query: 36 YNELL--SNQKKNMSSLDEHHVLKELSDLFQISSHNSFPNVYKESRSNSVKRIDSSRAVD 93
YN L +++ N +DE +VL ELS L ISS+ + + S N V A+D
Sbjct: 29 YNRTLCTASESLNHGVVDESYVLAELSSLLPISSNKTSVSKEDSSSKNQV-------AID 81
Query: 94 EFLLPEERLRGVFLQKLKGKGVIEDALWNVNVDLSLDVVGKVVNRGNLSGEAMVLFFNWA 153
FL E++LRGVFLQKLKGK I+ +L ++ + LS+D+V V+NRGNLSGEAMV FF+WA
Sbjct: 82 SFLSAEDKLRGVFLQKLKGKSAIQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWA 141
Query: 154 IKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQ 213
++ P V KDV SY+VI++ALGRRK F FM +VL M EGVNPDLE L+I MDSF+R
Sbjct: 142 VREPGVTKDVGSYSVILRALGRRKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHY 201
Query: 214 VYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIV 273
V +AI++ E FG+K ES N +L CLC+R HV AA S+FN+ KG + F+ +YNI+
Sbjct: 202 VRRAIELFEESESFGVKCSTESFNALLRCLCERSHVSAAKSVFNAKKGNIPFDSCSYNIM 261
Query: 274 ISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGC 333
ISGWSKLG+V EME+VLKE+V GF PD L++S LIEGLGR GRI+D++E+FD +K KG
Sbjct: 262 ISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGN 321
Query: 334 GPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALE 393
PD N YNA+I N+IS DFDE M+YY+ M CEPN++TY++L+SGL+K RKV+DALE
Sbjct: 322 VPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALE 381
Query: 394 VFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLS 453
+FEEML RG++P+TG +TSFL+PLCSYGPPHAAM++Y+K+RK GC++S +AYKLLL+RLS
Sbjct: 382 IFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLS 441
Query: 454 GFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRL 513
FGKCGMLL++W EMQESGYPSD E+YEY++ GLC IG LENAVLVMEE++RKGFCP+R
Sbjct: 442 RFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGFCPNRF 501
Query: 514 VYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRLWRSKGWHF 558
VYS+LS+KL+ASNK E AY LF KIK AR + AR WRS GWHF
Sbjct: 502 VYSRLSSKLMASNKTELAYKLFLKIKKARATENARSFWRSNGWHF 546
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357454671|ref|XP_003597616.1| hypothetical protein MTR_2g100200 [Medicago truncatula] gi|124360397|gb|ABN08410.1| Pentatricopeptide repeat [Medicago truncatula] gi|355486664|gb|AES67867.1| hypothetical protein MTR_2g100200 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/558 (59%), Positives = 411/558 (73%), Gaps = 36/558 (6%)
Query: 1 MAFLSRFYRTRYPLSSLSSSFSLFSFSTSVRSNLSYNELLSNQKKNMSSLDEHHVLKELS 60
+ F+ F + ++PL L FS +N S+LDE +L ++S
Sbjct: 6 LQFVLHFSKPKHPLPKLHQRFSSL--------------------QNSSNLDERLILHQIS 45
Query: 61 DLFQISSHNSFPNVYKESRSNSVKRIDSSRAVDEFLLPEERLRGVFLQKLKGKGVIEDAL 120
L I + + +S+S+S +++D FL PE++LRG+FLQKLKGK IE AL
Sbjct: 46 QLLPIPTSKT-----PDSQSDS-------KSIDGFLSPEDKLRGIFLQKLKGKAAIEQAL 93
Query: 121 WNVNVDLSLDVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFD 180
NV +D+++D++GKV+N GNL GEAMV+FFNWA+K P V +DV SY+VIVKALGRRKFF
Sbjct: 94 SNVCIDVNVDIIGKVLNFGNLGGEAMVMFFNWALKQPMVPRDVGSYHVIVKALGRRKFFV 153
Query: 181 FMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240
FM VL +M G+ DL LSIV+DSF+ AG V KAIQ+ G L+D GL D E LNV+L
Sbjct: 154 FMMQVLDEMRLNGIKADLLMLSIVIDSFVNAGHVSKAIQLFGNLDDLGLCRDTEVLNVLL 213
Query: 241 WCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSP 300
CLC+R HVGAA+S+FNSMKGKV FNV TYN+V+ GWSKLG+V E+E+V+KE+ EGFSP
Sbjct: 214 SCLCRRCHVGAAASVFNSMKGKVSFNVDTYNVVVGGWSKLGRVNEIEKVMKEMEVEGFSP 273
Query: 301 DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYY 360
D T +F +EGLGRAGR+D+A+EVF +MKEK DT YNA+I N+IS+GDFD MKYY
Sbjct: 274 DFNTLAFFLEGLGRAGRMDEAVEVFGSMKEK----DTAIYNAMIFNFISIGDFDGFMKYY 329
Query: 361 KGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSY 420
GM S NCEPN+ TY+R+I+ L++RKVADAL +F+EML +G+VP TGTITSF++ LCSY
Sbjct: 330 NGMLSDNCEPNIHTYSRMITAFLRTRKVADALLMFDEMLRQGVVPPTGTITSFIKQLCSY 389
Query: 421 GPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIY 480
GPP+AAMM+YKK RK+ CK+S+ AYK+LL RLS FGKCG LL +W EMQE GY SD E+Y
Sbjct: 390 GPPYAAMMIYKKTRKLECKISMEAYKILLMRLSKFGKCGSLLSVWQEMQECGYSSDVEVY 449
Query: 481 EYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKI 540
EY+I+GL NIGQLENAVLVMEE+LRKGFCPSRLVYSKLSNKLLASN E AY LF KIK
Sbjct: 450 EYIISGLYNIGQLENAVLVMEEALRKGFCPSRLVYSKLSNKLLASNLTERAYRLFLKIKH 509
Query: 541 ARQNDYARRLWRSKGWHF 558
AR AR WR GWHF
Sbjct: 510 ARSLKNARSYWRDNGWHF 527
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455613|ref|XP_004145547.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g43820-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 318/551 (57%), Positives = 404/551 (73%), Gaps = 5/551 (0%)
Query: 9 RTRYPLSSLSSSFSLFSFST-SVRSNLSYNELLSNQKKNMSSLDEHHVLKELSDLFQISS 67
R YPL S + FST SNL + L N +N +DE V+ ELSDL ++
Sbjct: 26 RYHYPLIHSPSPALSYLFSTLDEPSNLFDDGLSGNGDRNQRCIDERFVISELSDLLLVNP 85
Query: 68 HNSFPNVYKESRSNSVKRIDSSRAVDEFLLPEERLRGVFLQKLKGKGVIEDALWNVNVDL 127
+ S N KE NS+++ RAVD FLLPEE+LRGVFLQKL GK IE AL N +V L
Sbjct: 86 YGSVYNTLKE---NSIEKQMPVRAVDGFLLPEEKLRGVFLQKLNGKTAIEHALANTDVIL 142
Query: 128 SLDVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLS 187
S DVV KV+N G+L EAMV FF WAIK P++ KD SYN+I+KALGRR FFD M +VL
Sbjct: 143 SQDVVSKVLNTGSLGSEAMVTFFYWAIKQPSIPKDASSYNIILKALGRRGFFDSMMDVLY 202
Query: 188 DMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRL 247
+M +EGV LE +SIV+DS ++ QV KA+Q L++ GLK D E+LN++L C+C+R
Sbjct: 203 NMTREGVEATLEMVSIVVDSLVKGHQVSKALQFFRNLKEIGLKCDTETLNILLQCMCRRS 262
Query: 248 HVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSF 307
HVGAA+S FN KG + FNVMTYNIVI GWS+ G+ E+E++LK + +GFSPD LT ++
Sbjct: 263 HVGAANSFFNLTKGNIPFNVMTYNIVIGGWSRYGRHGEVEQMLKAMELDGFSPDCLTHTY 322
Query: 308 LIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYN 367
LIE LGRA +IDDA+++FD M E GC PD +AYNA+ISN+I +GDFD+C+ YY+ M S
Sbjct: 323 LIECLGRANQIDDAVKIFDKMDENGCTPDVDAYNAMISNFICIGDFDQCLTYYERMLSNR 382
Query: 368 CEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAM 427
CEP+M+TY+ LI+G LK++KVADALE+F+EM+ R I+P+TG ITSF++ CSYGPPHAAM
Sbjct: 383 CEPDMNTYSNLITGFLKAKKVADALEMFDEMVAR-IIPTTGAITSFIQLSCSYGPPHAAM 441
Query: 428 MMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGL 487
++YKKARKVGC++S AYKLLL RLS FGK GMLL++W+EMQESGY D E YE+ I L
Sbjct: 442 LIYKKARKVGCRISKNAYKLLLMRLSLFGKFGMLLNIWNEMQESGYDPDVETYEHAIDCL 501
Query: 488 CNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYA 547
C GQLENAVLVMEE LR+GF PSR SKL+NKLLA N+ E AY L+ KIK+AR +
Sbjct: 502 CKTGQLENAVLVMEECLRQGFFPSRRTRSKLNNKLLACNRTEMAYKLWLKIKVARHQENL 561
Query: 548 RRLWRSKGWHF 558
+R WR+KGWH+
Sbjct: 562 QRCWRAKGWHY 572
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|10177952|dbj|BAB11311.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 289/486 (59%), Positives = 373/486 (76%), Gaps = 9/486 (1%)
Query: 36 YNELL--SNQKKNMSSLDEHHVLKELSDLFQISSHNSFPNVYKESRSNSVKRIDSSRAVD 93
YN L +++ N +DE +VL ELS L ISS+ + + S N V A+D
Sbjct: 29 YNRTLCTASESLNHGVVDESYVLAELSSLLPISSNKTSVSKEDSSSKNQV-------AID 81
Query: 94 EFLLPEERLRGVFLQKLKGKGVIEDALWNVNVDLSLDVVGKVVNRGNLSGEAMVLFFNWA 153
FL E++LRGVFLQKLKGK I+ +L ++ + LS+D+V V+NRGNLSGEAMV FF+WA
Sbjct: 82 SFLSAEDKLRGVFLQKLKGKSAIQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWA 141
Query: 154 IKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQ 213
++ P V KDV SY+VI++ALGRRK F FM +VL M EGVNPDLE L+I MDSF+R
Sbjct: 142 VREPGVTKDVGSYSVILRALGRRKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHY 201
Query: 214 VYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIV 273
V +AI++ E FG+K ES N +L CLC+R HV AA S+FN+ KG + F+ +YNI+
Sbjct: 202 VRRAIELFEESESFGVKCSTESFNALLRCLCERSHVSAAKSVFNAKKGNIPFDSCSYNIM 261
Query: 274 ISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGC 333
ISGWSKLG+V EME+VLKE+V GF PD L++S LIEGLGR GRI+D++E+FD +K KG
Sbjct: 262 ISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGN 321
Query: 334 GPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALE 393
PD N YNA+I N+IS DFDE M+YY+ M CEPN++TY++L+SGL+K RKV+DALE
Sbjct: 322 VPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALE 381
Query: 394 VFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLS 453
+FEEML RG++P+TG +TSFL+PLCSYGPPHAAM++Y+K+RK GC++S +AYKLLL+RLS
Sbjct: 382 IFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLS 441
Query: 454 GFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRL 513
FGKCGMLL++W EMQESGYPSD E+YEY++ GLC IG LENAVLVMEE++RKGFCP+R
Sbjct: 442 RFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGFCPNRF 501
Query: 514 VYSKLS 519
VYS+LS
Sbjct: 502 VYSRLS 507
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297795031|ref|XP_002865400.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297311235|gb|EFH41659.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 596 bits (1536), Expect = e-167, Method: Compositional matrix adjust.
Identities = 274/429 (63%), Positives = 349/429 (81%)
Query: 91 AVDEFLLPEERLRGVFLQKLKGKGVIEDALWNVNVDLSLDVVGKVVNRGNLSGEAMVLFF 150
++D FL P E+LRGVFLQKLKGK I++ L ++ +DLS+D+V V+NRGNLSGEAMV FF
Sbjct: 74 SIDSFLSPAEKLRGVFLQKLKGKSAIQNCLSSLGIDLSIDIVSDVLNRGNLSGEAMVTFF 133
Query: 151 NWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIR 210
NWAI+ P V+KDV SY VI++ALGRRKFF FM +VL M EGVNPDL L+I MDSF+R
Sbjct: 134 NWAIREPGVSKDVDSYCVILRALGRRKFFSFMMDVLRGMVCEGVNPDLRCLTIAMDSFVR 193
Query: 211 AGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTY 270
A V +AI++ E +G+K ES N +L CLC+R HV AA+S+FN+ KGK+ F+ +Y
Sbjct: 194 AHYVRRAIELFEESESYGVKCSTESFNALLRCLCERSHVSAANSVFNAKKGKIPFDSCSY 253
Query: 271 NIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKE 330
NI+ISGWSKLG++ ME+VLKE+V GF PD L++S LIEGLGRAGRI+D++E+FD MK
Sbjct: 254 NIMISGWSKLGEIEGMEKVLKEMVEGGFVPDCLSYSHLIEGLGRAGRINDSVEIFDNMKH 313
Query: 331 KGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVAD 390
KG D N YNA+I N+IS DFDE M+YY+ M CEPN++TY++L+SGL+K RKV+D
Sbjct: 314 KGSVLDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSD 373
Query: 391 ALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLR 450
ALE+FEEML RGI+P+TG +TSFL+PLCSYGPPHAAM++Y+K+RK GC++S +AYKLLL+
Sbjct: 374 ALEIFEEMLSRGILPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLK 433
Query: 451 RLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCP 510
RLS FGKCGMLL++W EMQE GYPSD E+YEY++ GLC IG LENAVLVMEE++RKGFCP
Sbjct: 434 RLSRFGKCGMLLNVWDEMQECGYPSDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGFCP 493
Query: 511 SRLVYSKLS 519
+R VYS+LS
Sbjct: 494 NRFVYSRLS 502
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356557957|ref|XP_003547276.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g43820-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 302/556 (54%), Positives = 380/556 (68%), Gaps = 58/556 (10%)
Query: 3 FLSRFYRTRYPLSSLSSSFSLFSFSTSVRSNLSYNELLSNQKKNMSSLDEHHVLKELSDL 62
FL+RF + P F ++ RS LS + +LD+ VL +LS L
Sbjct: 8 FLTRFAKPHNP------------FPSTRRSPLSSLHA-PPPHHDQPNLDDRLVLDQLSHL 54
Query: 63 FQISSHNSFPNVYKESRSNSVKRIDSSRAVDEFLLPEERLRGVFLQKLKGKGVIEDALWN 122
F + S V+ N+ + AVD FL PE++LRGVFLQKLKG+ IE AL N
Sbjct: 55 FPTLTSKSQNPVFPNPHPNA------ANAVDAFLPPEDKLRGVFLQKLKGRAAIESALSN 108
Query: 123 VNVDLSLDVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFM 182
V V Y+VIVKALGRRKFFDFM
Sbjct: 109 VAV---------------------------------------XYHVIVKALGRRKFFDFM 129
Query: 183 CNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC 242
+ L DM + ++ DL LS+V+DSF+RAG V +AIQ+ G L+D G++ D E+LNV+L C
Sbjct: 130 MDALCDMRRNAIDGDLFMLSVVVDSFVRAGHVSRAIQVFGNLDDLGVRRDTEALNVLLLC 189
Query: 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDS 302
LC+R HVGAA+S+ NSMKGKV F+V TYN V GWS+ G+V E+ERV++E+ A+G PD
Sbjct: 190 LCRRSHVGAANSVLNSMKGKVDFDVGTYNAVAGGWSRFGRVSEVERVMREMEADGLRPDC 249
Query: 303 LTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKG 362
TF FLIEGLGR GR+D+A+E+ MKE C PDT YNAVI N++SVGDF+EC+KYY
Sbjct: 250 RTFGFLIEGLGREGRMDEAVEILCGMKEMNCQPDTETYNAVIFNFVSVGDFEECIKYYNR 309
Query: 363 MSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGP 422
M S NCEPN+DTY R+I+ L++RKVADAL +F+EML RG+VPSTGTIT+F++ LCSYGP
Sbjct: 310 MLSDNCEPNLDTYARMINRFLRARKVADALLMFDEMLRRGVVPSTGTITTFIKRLCSYGP 369
Query: 423 PHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEY 482
P+AA+M+YKKARK+GC +S+ AYK+LL RLS GKCG LL +W EMQE GY SD E+YE
Sbjct: 370 PYAALMIYKKARKLGCVISMEAYKILLMRLSMVGKCGTLLSIWEEMQECGYSSDLEVYEC 429
Query: 483 VIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIAR 542
+I+GLCN+GQLENAVLVMEE+LRKGFCPSRLVYSKLSN+LLAS+K E AY LF KIK AR
Sbjct: 430 IISGLCNVGQLENAVLVMEEALRKGFCPSRLVYSKLSNRLLASDKSERAYKLFLKIKXAR 489
Query: 543 QNDYARRLWRSKGWHF 558
+ A++ WRS GWHF
Sbjct: 490 SLENAKKYWRSNGWHF 505
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222622668|gb|EEE56800.1| hypothetical protein OsJ_06387 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/469 (50%), Positives = 330/469 (70%), Gaps = 11/469 (2%)
Query: 100 ERLRGVFLQKLKGKGVIEDALWNVNVD----LSLDVVGKVVNRGNLSGEAMVLFFNWAIK 155
+RLRGVFL K G+ + AL + +D LS +V+ VV+ GN SG A V FF+WAI
Sbjct: 73 DRLRGVFLLKPPGRAALHRALSSTGIDAAAALSPEVLSGVVSHGNFSGAATVDFFDWAIA 132
Query: 156 HPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVY 215
+ + V + N++++ALGRRKFF F L M K GV+PD+ TL I++DS I A V
Sbjct: 133 NSKLPPSVDTCNIVIRALGRRKFFAFFEPALEIMRKNGVSPDISTLEIIIDSLIAARHVN 192
Query: 216 KAIQMLGRLEDFGLKF-----DAESLNVVLWCLCQRLHVGAASSLFNSMKGKVL-FNVMT 269
AIQ++ + FGL E V++ CLC+R HVG ASSL + +G+ + +
Sbjct: 193 TAIQLIN-TDHFGLGVWQTCQRKEIFTVLINCLCRRSHVGLASSLLQASRGETIDLDNHM 251
Query: 270 YNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMK 329
YN VI GW++ G+V ++E + ++ +G PD +++ LIE LGRA R ++A++VF+ M
Sbjct: 252 YNEVIGGWARFGRVDKVEHFWETMLEDGLVPDQVSYCHLIEALGRANRAEEALQVFEKMV 311
Query: 330 EKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVA 389
+G P T AYNA+I N+ISVG+FD C+KYYK M NC PN+DTY ++I L+ RKVA
Sbjct: 312 HEGYCPTTMAYNALIFNFISVGNFDRCIKYYKDMLDNNCPPNIDTYRKMIRAFLRERKVA 371
Query: 390 DALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLL 449
DAL++F+EML RGI+PSTG IT F+EPLC++GPPHAA+++YK++RK GC++S+ AYKLLL
Sbjct: 372 DALQMFDEMLSRGILPSTGMITLFIEPLCTFGPPHAALLIYKRSRKAGCRISMKAYKLLL 431
Query: 450 RRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFC 509
RL+ FGK G +L +W EMQESG+PSD EIYE+++ GLCN+G+++ AV V+EES+RKGFC
Sbjct: 432 ERLAMFGKSGTVLQIWEEMQESGHPSDKEIYEFIVNGLCNVGKVDAAVSVVEESIRKGFC 491
Query: 510 PSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRLWRSKGWHF 558
R+VY KL+NKLL NK+E+AYNLF+K++ AR +R WR+ GWHF
Sbjct: 492 LGRVVYGKLNNKLLEMNKVETAYNLFKKVRDARVIANSRNYWRANGWHF 540
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 558 | ||||||
| TAIR|locus:2170907 | 546 | AT5G43820 [Arabidopsis thalian | 0.924 | 0.945 | 0.582 | 2.3e-165 | |
| TAIR|locus:2156213 | 637 | AT5G65820 [Arabidopsis thalian | 0.799 | 0.700 | 0.277 | 3.1e-44 | |
| TAIR|locus:2096099 | 599 | AT3G62470 "AT3G62470" [Arabido | 0.698 | 0.651 | 0.267 | 1.5e-42 | |
| TAIR|locus:2185455 | 598 | AT5G14820 "AT5G14820" [Arabido | 0.698 | 0.652 | 0.264 | 8.4e-42 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.643 | 0.476 | 0.289 | 3e-41 | |
| TAIR|locus:2012883 | 537 | AT1G20300 [Arabidopsis thalian | 0.657 | 0.683 | 0.260 | 3.6e-41 | |
| TAIR|locus:2096074 | 599 | AT3G62540 "AT3G62540" [Arabido | 0.698 | 0.651 | 0.262 | 5.9e-41 | |
| TAIR|locus:2097395 | 638 | AT3G49730 [Arabidopsis thalian | 0.790 | 0.691 | 0.261 | 2.5e-40 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.716 | 0.646 | 0.245 | 6.9e-40 | |
| TAIR|locus:2015213 | 629 | AT1G63150 [Arabidopsis thalian | 0.629 | 0.558 | 0.282 | 7e-39 |
| TAIR|locus:2170907 AT5G43820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1609 (571.5 bits), Expect = 2.3e-165, P = 2.3e-165
Identities = 306/525 (58%), Positives = 393/525 (74%)
Query: 36 YNELL--SNQKKNMSSLDEHHVLKELSDLFQISSHNSFPNVYKESRSNSVKRIDSSRAVD 93
YN L +++ N +DE +VL ELS L ISS+ + +V KE S+S ++ A+D
Sbjct: 29 YNRTLCTASESLNHGVVDESYVLAELSSLLPISSNKT--SVSKED-SSSKNQV----AID 81
Query: 94 EFLLPEERLRGVFLQKLKGKGVIEDALWNVNVDLSLDVVGKVVNRGNLSGEAMVLFFNWA 153
FL E++LRGVFLQKLKGK I+ +L ++ + LS+D+V V+NRGNLSGEAMV FF+WA
Sbjct: 82 SFLSAEDKLRGVFLQKLKGKSAIQKSLSSLGIGLSIDIVADVLNRGNLSGEAMVTFFDWA 141
Query: 154 IKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQ 213
++ P V KDV SY+VI++ALGRRK F FM +VL M EGVNPDLE L+I MDSF+R
Sbjct: 142 VREPGVTKDVGSYSVILRALGRRKLFSFMMDVLKGMVCEGVNPDLECLTIAMDSFVRVHY 201
Query: 214 VYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIV 273
V +AI++ E FG+K ES N +L CLC+R HV AA S+FN+ KG + F+ +YNI+
Sbjct: 202 VRRAIELFEESESFGVKCSTESFNALLRCLCERSHVSAAKSVFNAKKGNIPFDSCSYNIM 261
Query: 274 ISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGC 333
ISGWSKLG+V EME+VLKE+V GF PD L++S LIEGLGR GRI+D++E+FD +K KG
Sbjct: 262 ISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIFDNIKHKGN 321
Query: 334 GPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALE 393
PD N YNA+I N+IS DFDE M+YY+ M CEPN++TY++L+SGL+K RKV+DALE
Sbjct: 322 VPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGLIKGRKVSDALE 381
Query: 394 VFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLS 453
+FEEML RG++P+TG +TSFL+PLCSYGPPHAAM++Y+K+RK GC++S +AYKLLL+RLS
Sbjct: 382 IFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKRLS 441
Query: 454 GFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRL 513
FGKCGMLL++W EMQESGYPSD E+YEY++ GLC IG LENAVLVMEE++RKGFCP+R
Sbjct: 442 RFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGFCPNRF 501
Query: 514 VYXXXXXXXXXXXXXXXAYNLFRKIKIARQNDYARRLWRSKGWHF 558
VY AY LF KIK AR + AR WRS GWHF
Sbjct: 502 VYSRLSSKLMASNKTELAYKLFLKIKKARATENARSFWRSNGWHF 546
|
|
| TAIR|locus:2156213 AT5G65820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 127/458 (27%), Positives = 221/458 (48%)
Query: 54 HVLKELSDLFQISSHNSFPNVYKESRSNSVKRIDSSRAVDEFLLPEERLRGVFLQKLKGK 113
HV + L D F+ S N V E N R +S+ DEF E+ + L+K +
Sbjct: 43 HVSRALEDNFRRS--NGIGLVCLEKSHND--RTKNSK-YDEFASDVEKSYRI-LRKFHSR 96
Query: 114 -GVIEDALWNVNVDLSLDVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKA 172
+E AL V+L ++ +V+NR +G FF WA K P ++ Y +VK
Sbjct: 97 VPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKI 156
Query: 173 LGRRKFFDFMCNVLSDMAKEGVNPDL---ETLSIVMDSFIRAGQVYKAIQMLGRLEDFGL 229
L + + F + ++ +M KE NP L E +++ F A V KAI++L + FG
Sbjct: 157 LSKMRQFGAVWGLIEEMRKE--NPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGF 214
Query: 230 KFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERV 289
+ D +L LC+ V A+ LF M+ + N+ + ++ GW ++G+++E + V
Sbjct: 215 EPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYV 274
Query: 290 LKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYIS 349
L ++ GF PD + ++ L+ G AG++ DA ++ M+ +G P+ N Y +I
Sbjct: 275 LVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCK 334
Query: 350 VGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGT 409
V +E MK + M Y CE ++ TYT L+SG K K+ V ++M+ +G++PS T
Sbjct: 335 VDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELT 394
Query: 410 ITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQ 469
+ + + +K R++ + Y +++R G+ + LW+EM+
Sbjct: 395 YMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEME 454
Query: 470 ESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKG 507
E+G + + +I GL + G L A +E + +G
Sbjct: 455 ENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRG 492
|
|
| TAIR|locus:2096099 AT3G62470 "AT3G62470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 105/393 (26%), Positives = 201/393 (51%)
Query: 116 IEDALWNVNVDLSLDVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGR 175
+E L + +DLS D++ +V+ R + + FF WA + A D ++YN ++ L +
Sbjct: 148 MEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAK 207
Query: 176 RKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAES 235
+ F+ M +VL +M +G+ +ET +I M +F A + KA+ + ++ + K E+
Sbjct: 208 TRQFETMVSVLEEMGTKGLLT-METFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVET 266
Query: 236 LNVVLWCLCQRLHVGA-ASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIV 294
+N +L L R +G A LF+ +K + N+MTY ++++GW ++ ++E R+ +++
Sbjct: 267 INCLLDSL-GRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMI 325
Query: 295 AEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFD 354
+G PD + + ++EGL R+ + DAI++F MK KG P+ +Y +I ++ +
Sbjct: 326 DQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSME 385
Query: 355 ECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFL 414
++Y+ M +P+ YT LI+G +K+ E+ +EM ++G P T + +
Sbjct: 386 TAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALI 445
Query: 415 EPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYP 474
+ + + P A +Y K + + S+ + ++++ M +W EM + G
Sbjct: 446 KLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGIC 505
Query: 475 SDGEIYEYVIAGLCNIGQLENAVLVMEESLRKG 507
D Y +I GL G+ A +EE L KG
Sbjct: 506 PDDNSYTVLIRGLIGEGKSREACRYLEEMLDKG 538
|
|
| TAIR|locus:2185455 AT5G14820 "AT5G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 104/393 (26%), Positives = 200/393 (50%)
Query: 116 IEDALWNVNVDLSLDVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGR 175
+E L + +DLS D++ +V+ R + + FF WA + A D ++YN ++ L +
Sbjct: 147 MEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAK 206
Query: 176 RKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAES 235
+ F+ M +VL +M +G+ +ET +I M +F A + KA+ + ++ + K E+
Sbjct: 207 TRQFETMVSVLEEMGTKGLLT-METFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVET 265
Query: 236 LNVVLWCLCQRLHVGA-ASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIV 294
+N +L L R +G A LF+ +K + N+MTY ++++GW ++ ++E R+ +++
Sbjct: 266 INCLLDSL-GRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMI 324
Query: 295 AEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFD 354
G PD + + ++EGL R+ + DAI++F MK KG P+ +Y +I ++ +
Sbjct: 325 DHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSME 384
Query: 355 ECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFL 414
++Y+ M +P+ YT LI+G +K+ E+ +EM ++G P T + +
Sbjct: 385 TAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALI 444
Query: 415 EPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYP 474
+ + + P +Y K + + S+ + ++++ M +W EM + G
Sbjct: 445 KLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGIC 504
Query: 475 SDGEIYEYVIAGLCNIGQLENAVLVMEESLRKG 507
D Y +I GL + G+ A +EE L KG
Sbjct: 505 PDDNSYTVLIRGLISEGKSREACRYLEEMLDKG 537
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 444 (161.4 bits), Expect = 3.0e-41, P = 3.0e-41
Identities = 106/366 (28%), Positives = 182/366 (49%)
Query: 152 WAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRA 211
W IK P DV ++NV++KAL R +L DM G+ PD +T + VM +I
Sbjct: 183 WGIK-P----DVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEE 237
Query: 212 GQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLF--NVMT 269
G + A+++ ++ +FG + S+NV++ C+ V A + M + F + T
Sbjct: 238 GDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYT 297
Query: 270 YNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMK 329
+N +++G K G V ++ ++ EG+ PD T++ +I GL + G + +A+EV D M
Sbjct: 298 FNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMI 357
Query: 330 EKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVA 389
+ C P+T YN +IS +E + + ++S P++ T+ LI GL +R
Sbjct: 358 TRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHR 417
Query: 390 DALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLL 449
A+E+FEEM +G P T ++ LCS G A+ M K+ GC S+ Y L+
Sbjct: 418 VAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLI 477
Query: 450 RRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFC 509
K +++ EM+ G + Y +I GLC ++E+A +M++ + +G
Sbjct: 478 DGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQK 537
Query: 510 PSRLVY 515
P + Y
Sbjct: 538 PDKYTY 543
|
|
| TAIR|locus:2012883 AT1G20300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
Identities = 96/369 (26%), Positives = 177/369 (47%)
Query: 149 FFNWAIKHPNVA-KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDS 207
FFNWA + K YN ++ G+ + FD +++ M V +ET +I++
Sbjct: 136 FFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRR 195
Query: 208 FIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNV 267
++RAG +A+ R+ED+G D + ++V+ L ++ A S F+S+K + +V
Sbjct: 196 YVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDV 255
Query: 268 MTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDT 327
+ Y ++ GW + G++ E E+V KE+ G P+ T+S +I+ L R G+I A +VF
Sbjct: 256 IVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFAD 315
Query: 328 MKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRK 387
M + GC P+ +N ++ ++ G ++ ++ Y M CEP+ TY LI +
Sbjct: 316 MLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDEN 375
Query: 388 VADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKL 447
+ +A++V M+ + + T + + + A MY K + C+ + Y +
Sbjct: 376 LENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNI 435
Query: 448 LLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLR-K 506
L+R G M+L + EM + + Y ++ C +G NA + +E + K
Sbjct: 436 LMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEK 495
Query: 507 GFCPSRLVY 515
PS +Y
Sbjct: 496 CLTPSLSLY 504
|
|
| TAIR|locus:2096074 AT3G62540 "AT3G62540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 103/393 (26%), Positives = 199/393 (50%)
Query: 116 IEDALWNVNVDLSLDVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGR 175
+E L + +DLS D++ +V+ R + + FF WA + A ++YN ++ L +
Sbjct: 148 MEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAK 207
Query: 176 RKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAES 235
+ F+ M +VL +M +G+ +ET +I M +F A + KA+ + ++ + K E+
Sbjct: 208 TRQFETMVSVLEEMGTKGLLT-METFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVET 266
Query: 236 LNVVLWCLCQRLHVGA-ASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIV 294
+N +L L R +G A LF+ +K + N+MTY ++++GW ++ ++E R+ +++
Sbjct: 267 INCLLDSL-GRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMI 325
Query: 295 AEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFD 354
G PD + + ++EGL R+ + DAI++F MK KG P+ +Y +I ++ +
Sbjct: 326 DHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSME 385
Query: 355 ECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFL 414
++Y+ M +P+ YT LI+G +K+ E+ +EM ++G P T + +
Sbjct: 386 TAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALI 445
Query: 415 EPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYP 474
+ + + P +Y K + + S+ + ++++ M +W EM + G
Sbjct: 446 KLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGIC 505
Query: 475 SDGEIYEYVIAGLCNIGQLENAVLVMEESLRKG 507
D Y +I GL + G+ A +EE L KG
Sbjct: 506 PDDNSYTVLIRGLISEGKSREACRYLEEMLDKG 538
|
|
| TAIR|locus:2097395 AT3G49730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 2.5e-40, P = 2.5e-40
Identities = 118/451 (26%), Positives = 208/451 (46%)
Query: 63 FQISS--HNSFPNVYKESRSNSVKRIDSSRAVDEFLLPEERLRGVFLQKLKGKGVIEDAL 120
F IS +N F V R N V + + DEF E++ + +E AL
Sbjct: 31 FHISRVLNNDF--VESTERKNGVGLVCPEKHEDEFAGEVEKIYRILRNHHSRVPKLELAL 88
Query: 121 WNVNVDLSLDVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFD 180
+DL ++ +V++R +G FF WA K P + +V L + + F
Sbjct: 89 NESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFG 148
Query: 181 FMCNVLSDMAKEGVNPDL---ETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLN 237
+ ++ +M K NP+L E ++M F A V KA+++L + +GL+ D
Sbjct: 149 AVWGLIEEMRK--TNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFG 206
Query: 238 VVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEG 297
+L LC+ V AS +F M+ K N+ + ++ GW + G+++E + VL ++ G
Sbjct: 207 CLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAG 266
Query: 298 FSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGD-FDEC 356
PD + F+ L+ G AG++ DA ++ + M+++G P+ N Y +I DE
Sbjct: 267 LEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEA 326
Query: 357 MKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEP 416
M+ + M Y CE ++ TYT LISG K + V ++M +G++PS T +
Sbjct: 327 MRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVA 386
Query: 417 LCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSD 476
+ + +K ++ GC L Y +++R G+ + LW+EM+ +G
Sbjct: 387 HEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPG 446
Query: 477 GEIYEYVIAGLCNIGQLENAVLVMEESLRKG 507
+ + +I G + G L A +E + +G
Sbjct: 447 VDTFVIMINGFTSQGFLIEACNHFKEMVSRG 477
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 407 (148.3 bits), Expect = 6.9e-40, Sum P(2) = 6.9e-40
Identities = 99/404 (24%), Positives = 193/404 (47%)
Query: 138 RGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD 197
+G +S EA+VL + +++ D +Y ++ L + ++ M + +
Sbjct: 188 KGRVS-EALVLI-DRMVEY-GFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKAS 244
Query: 198 LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFN 257
+ SIV+DS + G A+ + +E G+K D + + ++ LC + +
Sbjct: 245 VVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLR 304
Query: 258 SMKGK-VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAG 316
M G+ ++ +V+T++ +I + K G+++E + + E++ G +PD++T++ LI+G +
Sbjct: 305 EMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN 364
Query: 317 RIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYT 376
+ +A ++FD M KGC PD Y+ +I++Y D+ M+ ++ +SS PN TY
Sbjct: 365 CLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYN 424
Query: 377 RLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKV 436
L+ G +S K+ A E+F+EM+ RG+ PS T L+ LC G + A+ +++K +K
Sbjct: 425 TLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKS 484
Query: 437 GCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENA 496
L + Y +++ + K L+ + + G D Y +I GLC G L A
Sbjct: 485 RMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEA 544
Query: 497 VLVMEESLRKGFCPSRLVYXXXXXXXXXXXXXXXAYNLFRKIKI 540
++ + G P Y + L ++K+
Sbjct: 545 DMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKV 588
|
|
| TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 418 (152.2 bits), Expect = 7.0e-39, P = 7.0e-39
Identities = 101/357 (28%), Positives = 180/357 (50%)
Query: 185 VLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLC 244
++ M + G PDL T V++ + G + A+ +L ++E +K + N ++ LC
Sbjct: 210 LVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLC 269
Query: 245 QRLHVGAASSLFNSMKGK-VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSL 303
+ HV A LF M+ K + NV+TYN +I+ G+ + R+L ++ + +P+ +
Sbjct: 270 KYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVV 329
Query: 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGM 363
TF+ LI+ + G++ +A ++ + M ++ PDT YN +I+ + DE + +K M
Sbjct: 330 TFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFM 389
Query: 364 SSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPP 423
S +C PN+ TY LI+G K ++V D +E+F EM RG+V +T T T+ ++ G
Sbjct: 390 VSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDC 449
Query: 424 HAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYV 483
+A M++K+ + Y +LL L +GK L ++ +Q+S + IY +
Sbjct: 450 DSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTM 509
Query: 484 IAGLCNIGQLENAV-LVMEESLRKGFCPSRLVYXXXXXXXXXXXXXXXAYNLFRKIK 539
I G+C G++ A L S++ P + Y A +LFRK+K
Sbjct: 510 IEGMCKAGKVGEAWDLFCSLSIK----PDVVTYNTMISGLCSKRLLQEADDLFRKMK 562
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P0C8R0 | PP416_ARATH | No assigned EC number | 0.5980 | 0.9247 | 0.9450 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00002897001 | SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (561 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 558 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.004 | |
| cd01080 | 168 | cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 2e-18
Identities = 87/353 (24%), Positives = 156/353 (44%), Gaps = 11/353 (3%)
Query: 195 NPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRL-HVGAAS 253
NP L T +++M + + A+++L +++ GLK D + L L C + V A
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCK-LYTTLISTCAKSGKVDAMF 492
Query: 254 SLFNSM-KGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGL 312
+F+ M V NV T+ +I G ++ GQV + + ++ PD + F+ LI
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552
Query: 313 GRAGRIDDAIEVFDTMK--EKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEP 370
G++G +D A +V MK PD A++ + G D + Y+ + YN +
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612
Query: 371 NMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMY 430
+ YT ++ + AL ++++M +G+ P ++ ++ G A +
Sbjct: 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672
Query: 431 KKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNI 490
+ ARK G KL +Y L+ S L+L+ +++ +I LC
Sbjct: 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732
Query: 491 GQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNK---LESAYNLFRKIKI 540
QL A+ V+ E R G CP+ + YS L L+AS + + +L + K
Sbjct: 733 NQLPKALEVLSEMKRLGLCPNTITYSIL---LVASERKDDADVGLDLLSQAKE 782
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 88.8 bits (220), Expect = 2e-18
Identities = 67/300 (22%), Positives = 129/300 (43%), Gaps = 40/300 (13%)
Query: 158 NVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEG--VNPDLETLSIVMDSFIRAGQVY 215
NV D +N ++ A G+ D +VL++M E ++PD T+ +M + AGQV
Sbjct: 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596
Query: 216 KAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVIS 275
+A ++ + ++ +K E Y I ++
Sbjct: 597 RAKEVYQMIHEYNIKGTPE----------------------------------VYTIAVN 622
Query: 276 GWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGP 335
S+ G + ++ +G PD + FS L++ G AG +D A E+ +++G
Sbjct: 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682
Query: 336 DTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVF 395
T +Y++++ + ++ + ++ Y+ + S P + T LI+ L + ++ ALEV
Sbjct: 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742
Query: 396 EEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYK----LLLRR 451
EM G+ P+T T + L + + +A++ G K +L + L LRR
Sbjct: 743 SEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRR 802
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 6e-14
Identities = 74/332 (22%), Positives = 147/332 (44%), Gaps = 19/332 (5%)
Query: 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQM 220
+D+ S+NV+V + +FD + M GV PD+ T V+ + + + ++
Sbjct: 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREV 209
Query: 221 LGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKL 280
+ FG + D + +N ++ + V +A +F+ M + + +++N +ISG+ +
Sbjct: 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR---DCISWNAMISGYFEN 266
Query: 281 GQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAY 340
G+ +E + + PD +T + +I G E+ + + G D +
Sbjct: 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326
Query: 341 NAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLD 400
N++I Y+S+G + E K + M + + ++T +ISG K+ ALE + M
Sbjct: 327 NSLIQMYLSLGSWGEAEKVFSRM---ETKDAV-SWTAMISGYEKNGLPDKALETYALMEQ 382
Query: 401 RGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRL-SGFGKCG 459
+ P TI S L G + +++ A + G L +Y ++ L + KC
Sbjct: 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG----LISYVVVANALIEMYSKCK 438
Query: 460 ML---LDLWHEMQESGYPSDGEIYEYVIAGLC 488
+ L+++H + E S + +IAGL
Sbjct: 439 CIDKALEVFHNIPEKDVIS----WTSIIAGLR 466
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 2e-10
Identities = 15/46 (32%), Positives = 33/46 (71%)
Query: 300 PDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVIS 345
PD +T++ LI+G + G++++A+++F+ MK++G P+ Y+ +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 4e-10
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 335 PDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLK 384
PD YN +I Y G +E +K + M +PN+ TY+ LI GL K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 8e-10
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGR 314
+V+TYN +I G+ K G+V E ++ E+ G P+ T+S LI+GL +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 5e-09
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 370 PNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLC 418
P++ TY LI G K KV +AL++F EM RGI P+ T + ++ LC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 78/387 (20%), Positives = 164/387 (42%), Gaps = 47/387 (12%)
Query: 189 MAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLH 248
M + V+PDL T++ V+ + G +M G + G D N ++
Sbjct: 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338
Query: 249 VGAASSLFNSMKGKVLFNVMTYNIVISGWSKLG---QVVEMERVLKEIVAEGFSPDSLTF 305
G A +F+ M+ K + +++ +ISG+ K G + +E ++++ + SPD +T
Sbjct: 339 WGEAEKVFSRMETK---DAVSWTAMISGYEKNGLPDKALETYALMEQ---DNVSPDEITI 392
Query: 306 SFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS 365
+ ++ G +D +++ + + KG NA+I Y D+ ++ + +
Sbjct: 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP- 451
Query: 366 YNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGP--- 422
E ++ ++T +I+GL + + +AL F +ML + P++ T+ + L G
Sbjct: 452 ---EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMC 507
Query: 423 -------------------PHAAMMMYKKARKVG--------CKLSLTAYKLLLRRLSGF 455
P+A + +Y + ++ + + ++ +LL
Sbjct: 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAH 567
Query: 456 GKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGF--CPSRL 513
GK M ++L++ M ESG D + ++ C+ + L S+ + + P+
Sbjct: 568 GKGSMAVELFNRMVESGVNPDEVTFISLLCA-CSRSGMVTQGLEYFHSMEEKYSITPNLK 626
Query: 514 VYSKLSNKLLASNKLESAYNLFRKIKI 540
Y+ + + L + KL AYN K+ I
Sbjct: 627 HYACVVDLLGRAGKLTEAYNFINKMPI 653
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 2e-08
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 297 GFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMK 329
G PD +T++ LI+GL RAGR+D+A+E+ D M+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 44/174 (25%), Positives = 79/174 (45%), Gaps = 8/174 (4%)
Query: 185 VLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD--AESLNVVLWC 242
+ +M GV+ D T SI++ F R + A Q L G D A + V L+
Sbjct: 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371
Query: 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDS 302
R + A ++F+ M K N++++N +I+G+ G+ + + + ++AEG +P+
Sbjct: 372 KWGR--MEDARNVFDRMPRK---NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426
Query: 303 LTFSFLIEGLGRAGRIDDAIEVFDTMKE-KGCGPDTNAYNAVISNYISVGDFDE 355
+TF ++ +G + E+F +M E P Y +I G DE
Sbjct: 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-06
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDT 337
T++ LI+GL +AGR+++A+E+F MKE+G PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 5e-06
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 367 NCEPNMDTYTRLISGLLKSRKVADALEVFEEM 398
+P++ TY LI GL ++ +V +A+E+ +EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 7e-06
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 374 TYTRLISGLLKSRKVADALEVFEEMLDRGIVPST 407
TY LI GL K+ +V +ALE+F+EM +RGI P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 6/184 (3%)
Query: 252 ASSLFNSMK-GKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIE 310
A L+ M+ V + T++I+I +S+L + ++ ++ GF D + + L++
Sbjct: 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVD 368
Query: 311 GLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEP 370
+ GR++DA VFD M K + ++NA+I+ Y + G + ++ ++ M + P
Sbjct: 369 LYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424
Query: 371 NMDTYTRLISGLLKSRKVADALEVFEEML-DRGIVPSTGTITSFLEPLCSYGPPHAAMMM 429
N T+ ++S S E+F+ M + I P +E L G A M
Sbjct: 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484
Query: 430 YKKA 433
++A
Sbjct: 485 IRRA 488
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 57/280 (20%), Positives = 100/280 (35%), Gaps = 51/280 (18%)
Query: 298 FSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECM 357
F+ + T+ L+E I V+ ++ G PD N V+ ++ G +
Sbjct: 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178
Query: 358 KYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPL 417
+ + M E N+ ++ +I GL+ + +A +F EM + G T L
Sbjct: 179 RLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234
Query: 418 CSYGPPHAAMMMYKKARKVG--------CKL-----------------------SLTAYK 446
G A ++ K G C L + A+
Sbjct: 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWN 294
Query: 447 LLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506
+L + G L L++EM++SG D + +I + LE+A +R
Sbjct: 295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354
Query: 507 GFCPSRLV--------YSKLSNKLLASNKLESAYNLFRKI 538
GF P +V YSK ++E A N+F ++
Sbjct: 355 GF-PLDIVANTALVDLYSKWG-------RMEDARNVFDRM 386
|
Length = 697 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 4e-05
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 372 MDTYTRLISGLLKSRKVADALEVFEEMLDRGIVP 405
++TY L+ L K+ AL V EEM G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSF 208
DV +YN ++ ++ + + ++M K G+ P++ T SI++D
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 46/222 (20%), Positives = 82/222 (36%), Gaps = 58/222 (26%)
Query: 197 DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGA----- 251
T ++++ I + + +E G + D +N VL +HV
Sbjct: 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL-----LMHVKCGMLID 176
Query: 252 ASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIE- 310
A LF+ M + N+ ++ +I G G E + +E+ +G + TF ++
Sbjct: 177 ARRLFDEMPER---NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233
Query: 311 ----GLGRAGR------------------------------IDDAIEVFDTMKEKGCGPD 336
G RAG+ I+DA VFD M EK
Sbjct: 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----T 289
Query: 337 TNAYNAVISNYISVGDFDECMKYYKGMSSYNCEP--NMDTYT 376
T A+N++++ Y G +E + Y M + ++D +T
Sbjct: 290 TVAWNSMLAGYALHGYSEEALCLYYEM----RDSGVSIDQFT 327
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 6e-05
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 268 MTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDS 302
+TYN +I G K G+V E + KE+ G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 8e-05
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGC 333
T++ LI G +AG++++A+E+F MKEKG
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 1e-04
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 374 TYTRLISGLLKSRKVADALEVFEEMLDRGI 403
TY LISG K+ K+ +ALE+F+EM ++G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 7/150 (4%)
Query: 309 IEGLGRAGRIDDAIEVFDTMKEKGCGPDTNA--YNAVISNYISVGDFDECMKYYKGMSSY 366
IE L GR +A+E+F+ + E GC A Y+A++ I++ Y + S
Sbjct: 94 IEKLVACGRHREALELFEIL-EAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS 152
Query: 367 NCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAA 426
EP+ R++ +K + DA +F+EM +R + S GTI L G A
Sbjct: 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLA-SWGTIIG---GLVDAGNYREA 208
Query: 427 MMMYKKARKVGCKLSLTAYKLLLRRLSGFG 456
++++ + G + ++LR +G G
Sbjct: 209 FALFREMWEDGSDAEPRTFVVMLRASAGLG 238
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 237 NVVLWCLCQRLHVGAASSLFNSMKGKVLF-NVMTYNIVISGWSK 279
N ++ C++ V A LFN MK + + NV TY+I+I G K
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 339 AYNAVISNYISVGDFDECMKYYKGMSSYNCEPN 371
YN +I G +E ++ +K M EP+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 51/255 (20%), Positives = 110/255 (43%), Gaps = 11/255 (4%)
Query: 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQM 220
KD S+ ++ + D + M ++ V+PD T++ V+ + G + +++
Sbjct: 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411
Query: 221 LGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKL 280
E GL N ++ + + A +F+++ K +V+++ +I+G
Sbjct: 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK---DVISWTSIIAGLRLN 468
Query: 281 GQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAY 340
+ E ++++ P+S+T + R G + E+ + G G D
Sbjct: 469 NRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP 527
Query: 341 NAVISNYISVGDFDECMKYYKGMSSYN-CEPNMDTYTRLISGLLKSRKVADALEVFEEML 399
NA++ Y+ G M Y + +N E ++ ++ L++G + K + A+E+F M+
Sbjct: 528 NALLDLYVRCGR----MNY--AWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMV 581
Query: 400 DRGIVPSTGTITSFL 414
+ G+ P T S L
Sbjct: 582 ESGVNPDEVTFISLL 596
|
Length = 857 |
| >gnl|CDD|133448 cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.004
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 18/91 (19%)
Query: 113 KGVIEDALWNVNVDLS-LDVVGKVVNRGNLSGEAMVLFFNWA--------IKHPNVAKDV 163
G++E L +DL+ VV VV R N+ G+ + K N+ +
Sbjct: 29 AGILE-LLKRYGIDLAGKKVV--VVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHT 85
Query: 164 KSYNVIVKALGRRKFFDFMCNVLSDMAKEGV 194
K ++++ A+G+ DM K G
Sbjct: 86 KQADIVIVAVGKPGLVK------GDMVKPGA 110
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well as bifunctional m-THF m-THF DHm-THF DHDH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains the bifunctional DH/cyclohydrolase. M-THF DH, like other amino acid DH-like NAD(P)-binding domains, is a member of the Rossmann fold superfamily which includes glutamate, leucine, and phenylalanine DHs, m-THF DH, methylene-tetrahydromethanopterin DH, m-THF DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. Length = 168 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 558 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.86 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.83 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.82 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.74 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.71 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.64 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.63 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.62 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.59 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.56 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.55 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.53 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.53 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.52 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.51 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.51 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.48 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.46 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.43 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.43 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.42 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.39 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.39 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.36 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.3 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.29 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.28 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.25 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.24 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.24 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.23 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.2 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.16 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.16 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.14 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.14 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.11 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.11 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.07 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.06 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.05 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.02 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.02 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.01 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.01 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.0 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.0 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.99 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.99 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.95 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.9 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.87 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.86 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.86 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.81 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.8 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.76 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.76 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.74 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.74 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.73 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.71 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.66 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.65 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.64 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.64 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.62 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.62 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.6 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.6 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.59 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.59 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.55 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.54 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.51 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.5 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.49 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.49 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.48 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.45 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.45 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.44 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.44 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.42 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.42 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.41 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.4 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.38 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.37 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.36 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.35 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.34 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.32 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.24 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.23 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.23 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.22 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.2 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.17 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.17 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.12 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.08 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.06 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.05 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.04 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.03 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.0 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.0 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.93 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.93 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.92 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.9 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.89 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.82 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.77 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.76 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.75 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.73 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.68 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.65 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.63 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.59 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.59 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.55 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.55 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.53 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.49 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.48 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.48 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.48 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.47 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.47 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.46 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.46 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.45 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.43 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.42 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.42 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.38 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.34 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.31 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.29 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.24 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.22 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.18 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.17 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.15 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.13 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.12 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.09 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.06 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.01 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.96 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.96 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.94 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.91 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.91 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.9 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.89 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.87 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.83 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.82 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.78 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.7 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.65 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.61 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.56 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.55 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.52 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.47 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.41 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.41 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.35 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.35 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.27 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.27 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.25 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.16 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.16 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.15 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.97 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.92 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.91 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.87 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.78 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.76 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.75 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.7 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.63 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.6 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.55 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.51 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.31 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.31 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.25 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.07 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.06 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.01 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.98 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.97 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.92 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.9 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.89 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.87 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.76 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.75 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.74 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.7 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.55 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.46 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.42 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.38 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.35 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.24 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.16 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.11 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.93 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.88 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.87 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.79 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.67 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.29 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.09 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.05 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.97 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.82 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 92.74 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.65 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.63 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.61 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.48 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.43 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.42 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.42 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.35 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.31 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.16 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.12 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.04 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 91.2 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.06 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.9 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.69 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 90.69 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 90.55 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 90.31 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.21 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 89.88 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.48 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.35 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.25 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 88.77 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.54 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.29 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.21 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 88.0 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 87.81 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 87.46 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 87.43 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.16 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.03 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 87.01 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 87.01 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.55 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 86.38 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 86.17 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 85.86 | |
| PF14669 | 233 | Asp_Glu_race_2: Putative aspartate racemase | 85.14 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.76 | |
| PRK09687 | 280 | putative lyase; Provisional | 84.6 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.36 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 84.27 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.7 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 83.66 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 83.64 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 83.49 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.43 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 83.26 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.13 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.12 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.02 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.84 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 82.59 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 82.57 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.44 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 82.31 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 81.95 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.74 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 81.66 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-62 Score=523.47 Aligned_cols=445 Identities=16% Similarity=0.216 Sum_probs=401.5
Q ss_pred hHHHHHHhcccCcchHHHHHh------hCCCCCCHH----HHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 008633 101 RLRGVFLQKLKGKGVIEDALW------NVNVDLSLD----VVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIV 170 (558)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~~l~------~~~~~~~~~----~v~~~l~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~li 170 (558)
..+..+..++...+.++++++ ..|+..... .+...+.+.+.. +.|..||+.+. .||..+||.+|
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~-~eAl~lf~~M~-----~pd~~Tyn~LL 444 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAV-KEAFRFAKLIR-----NPTLSTFNMLM 444 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCH-HHHHHHHHHcC-----CCCHHHHHHHH
Confidence 334444455544455555543 334332222 222334433333 55667776543 39999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHh
Q 008633 171 KALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVG 250 (558)
Q Consensus 171 ~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~ 250 (558)
.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 251 AASSLFNSMKG-KVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA--EGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDT 327 (558)
Q Consensus 251 ~A~~~~~~m~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 327 (558)
+|.++|+.|.. ++.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999974 5889999999999999999999999999999986 68999999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008633 328 MKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPST 407 (558)
Q Consensus 328 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 407 (558)
|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.|+.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008633 408 GTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGL 487 (558)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 487 (558)
.+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHhcCC
Q 008633 488 CNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLA----S-------------------NKLESAYNLFRKIKIARQN 544 (558)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~~~~ 544 (558)
++.|++++|.+++++|.+.|+.||..+|+.|+..|.+ + +..++|..+|++|.+.|+.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~ 844 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTL 844 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999876432 1 2347899999999999999
Q ss_pred chhhhhh
Q 008633 545 DYARRLW 551 (558)
Q Consensus 545 ~~~~~~~ 551 (558)
|+..++-
T Consensus 845 Pd~~T~~ 851 (1060)
T PLN03218 845 PTMEVLS 851 (1060)
T ss_pred CCHHHHH
Confidence 9977653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-62 Score=521.62 Aligned_cols=416 Identities=21% Similarity=0.312 Sum_probs=396.8
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008633 129 LDVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSF 208 (558)
Q Consensus 129 ~~~v~~~l~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~ 208 (558)
..++..+++.+.. +.|..+|+++.+...+.++...++.++.+|.+.|.+++|+.+++.|.. ||..+|+.++.+|
T Consensus 374 ~~~y~~l~r~G~l--~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 374 IDAYNRLLRDGRI--KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVC 447 (1060)
T ss_pred HHHHHHHHHCcCH--HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHH
Confidence 3455555554443 567788888877766788999999999999999999999999999974 8999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhc-CCCCChhhHHHHHHHHHhcCCHHHHH
Q 008633 209 IRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKG-KVLFNVMTYNIVISGWSKLGQVVEME 287 (558)
Q Consensus 209 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~li~~~~~~g~~~~A~ 287 (558)
++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. ++.||..+|+.||.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999975 57899999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 288 RVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKE--KGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 288 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999986 68999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 008633 366 YNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAY 445 (558)
Q Consensus 366 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 445 (558)
.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008633 446 KLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLAS 525 (558)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 525 (558)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCchhhhh
Q 008633 526 NKLESAYNLFRKIKIARQNDYARRL 550 (558)
Q Consensus 526 g~~~~A~~~~~~m~~~~~~~~~~~~ 550 (558)
|++++|.+++++|.+.|+.|+...+
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~~ty 792 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNLVMC 792 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999987544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-60 Score=506.72 Aligned_cols=439 Identities=15% Similarity=0.176 Sum_probs=402.7
Q ss_pred CchhhHHHHHHhcccCcchH------HHHHhhCCCCCCHHHHHHHHHcCCC--chHHHHHHHHHHhcCCCCCCCHHHHHH
Q 008633 97 LPEERLRGVFLQKLKGKGVI------EDALWNVNVDLSLDVVGKVVNRGNL--SGEAMVLFFNWAIKHPNVAKDVKSYNV 168 (558)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~------~~~l~~~~~~~~~~~v~~~l~~~~~--~~~~~~~ff~~~~~~~~~~~~~~~~~~ 168 (558)
.++...+..+++.+...+.+ ...+...|+..+..+.+.++..... ..+.|..+|+. ...||..+||.
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~-----m~~~~~~t~n~ 194 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE-----MPERNLASWGT 194 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhc-----CCCCCeeeHHH
Confidence 46777888888888655543 3445567888777666665553222 22556666653 34689999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 169 IVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLH 248 (558)
Q Consensus 169 li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~ 248 (558)
+|.+|++.|++++|+++|++|.+.|+.||..||..++.+|++.|..+.+.+++..+.+.|+.+|..+||+|+++|++.|+
T Consensus 195 li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 274 (697)
T PLN03081 195 IIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274 (697)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 249 VGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTM 328 (558)
Q Consensus 249 ~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 328 (558)
+++|.++|+.|... |+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.++++.|
T Consensus 275 ~~~A~~vf~~m~~~---~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m 351 (697)
T PLN03081 275 IEDARCVFDGMPEK---TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351 (697)
T ss_pred HHHHHHHHHhCCCC---ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 99999999999764 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 008633 329 KEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTG 408 (558)
Q Consensus 329 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 408 (558)
.+.|+.||..+|++|+++|++.|++++|.++|++|. .||..+|++||.+|++.|+.++|.++|++|.+.|+.||..
T Consensus 352 ~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~ 427 (697)
T PLN03081 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427 (697)
T ss_pred HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 999999999999999999999999999999999997 5899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008633 409 TITSFLEPLCSYGPPHAAMMMYKKARK-VGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGL 487 (558)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 487 (558)
||++++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++++.+|
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~ 504 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTAC 504 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHH
Confidence 999999999999999999999999986 699999999999999999999999999998876 6789999999999999
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhhhc
Q 008633 488 CNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRLWR 552 (558)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 552 (558)
+..|+++.|..+++++.+. .|+ ..+|..|++.|++.|++++|.+++++|++.|+.+..+..|-
T Consensus 505 ~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i 568 (697)
T PLN03081 505 RIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWI 568 (697)
T ss_pred HHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEE
Confidence 9999999999999999744 564 67999999999999999999999999999999988887773
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=496.49 Aligned_cols=433 Identities=19% Similarity=0.281 Sum_probs=369.2
Q ss_pred CchhhHHHHHHhcccCcch------HHHHHhhCCCCCCHHHHHHHHH----cCCCchHHHHHHHHHHhcCCCCCCCHHHH
Q 008633 97 LPEERLRGVFLQKLKGKGV------IEDALWNVNVDLSLDVVGKVVN----RGNLSGEAMVLFFNWAIKHPNVAKDVKSY 166 (558)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~------~~~~l~~~~~~~~~~~v~~~l~----~~~~~~~~~~~ff~~~~~~~~~~~~~~~~ 166 (558)
.|+...|..+++.+.+.+. +...+...|+..+..+.+.++. .+.. +.|..+|+. ...||..+|
T Consensus 184 ~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~--~~A~~lf~~-----m~~~d~~s~ 256 (857)
T PLN03077 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV--VSARLVFDR-----MPRRDCISW 256 (857)
T ss_pred CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCH--HHHHHHHhc-----CCCCCcchh
Confidence 4555566666666544332 2333344565555444444433 3322 456666654 346899999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008633 167 NVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQR 246 (558)
Q Consensus 167 ~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 246 (558)
|.||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+||+|+.+|++.
T Consensus 257 n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 247 LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFD 326 (558)
Q Consensus 247 ~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 326 (558)
|++++|.++|++|.. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++
T Consensus 337 g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 337 GSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred CCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 999999999999975 59999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008633 327 TMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPS 406 (558)
Q Consensus 327 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 406 (558)
.|.+.|+.|+..+|+.|+++|++.|++++|.++|++|. .+|..+|+++|.+|++.|+.++|.++|++|.. ++.||
T Consensus 414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd 488 (857)
T PLN03077 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPN 488 (857)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCC
Confidence 99999999999999999999999999999999999998 57889999999999999999999999999986 58999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC------------------------------CCCHHHHHHHHHHHHcCC
Q 008633 407 TGTITSFLEPLCSYGPPHAAMMMYKKARKVGC------------------------------KLSLTAYKLLLRRLSGFG 456 (558)
Q Consensus 407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------------------------------~~~~~~~~~li~~~~~~g 456 (558)
..||+.++.+|++.|..+.+.+++..+.+.|+ .+|..+|+.+|.+|++.|
T Consensus 489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G 568 (857)
T PLN03077 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHG 568 (857)
T ss_pred HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcC
Confidence 99999999888888888888877777776665 456667777777777888
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 457 KCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESL-RKGFCPSRLVYSKLSNKLLASNKLESAYNLF 535 (558)
Q Consensus 457 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 535 (558)
+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++++|.+.|++++|.+++
T Consensus 569 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~ 648 (857)
T PLN03077 569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI 648 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence 888888888888888888888888888888888888888888888887 5678888888888888888888888888888
Q ss_pred HHHHHhcCCchh
Q 008633 536 RKIKIARQNDYA 547 (558)
Q Consensus 536 ~~m~~~~~~~~~ 547 (558)
++|. +.|+.
T Consensus 649 ~~m~---~~pd~ 657 (857)
T PLN03077 649 NKMP---ITPDP 657 (857)
T ss_pred HHCC---CCCCH
Confidence 8774 45553
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-57 Score=493.94 Aligned_cols=440 Identities=19% Similarity=0.272 Sum_probs=384.2
Q ss_pred CchhhHHHHHHhcccCcchHHHH------HhhCCCCCCH----HHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCHHHH
Q 008633 97 LPEERLRGVFLQKLKGKGVIEDA------LWNVNVDLSL----DVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSY 166 (558)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~~~~------l~~~~~~~~~----~~v~~~l~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~ 166 (558)
.++...+..+++.+.....+..+ +...+...+. .++..+.+.+.. +.|..+|+. ..+||+.+|
T Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~--~~A~~~f~~-----m~~~d~~~~ 155 (857)
T PLN03077 83 PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGEL--VHAWYVFGK-----MPERDLFSW 155 (857)
T ss_pred CCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCCh--HHHHHHHhc-----CCCCCeeEH
Confidence 45666677777776554433332 2334444443 334333344433 455666653 346899999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008633 167 NVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQR 246 (558)
Q Consensus 167 ~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 246 (558)
|.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..++++.+.+++..|.+.|+.||..++|.||.+|++.
T Consensus 156 n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~ 235 (857)
T PLN03077 156 NVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC 235 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 247 LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFD 326 (558)
Q Consensus 247 ~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 326 (558)
|++++|.++|++|.. +|..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++.
T Consensus 236 g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~ 312 (857)
T PLN03077 236 GDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312 (857)
T ss_pred CCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Confidence 999999999999976 49999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008633 327 TMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPS 406 (558)
Q Consensus 327 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 406 (558)
.|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|+++|++|.+.|+.||
T Consensus 313 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred HHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999997 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC--------------
Q 008633 407 TGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESG-------------- 472 (558)
Q Consensus 407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------- 472 (558)
..||+.++.+|++.|+++.|.++++.+.+.|+.++..+|+.|+++|++.|++++|.++|++|.+.+
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLN 468 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999888888887775321
Q ss_pred ----------------C---------------------------------------------------------------
Q 008633 473 ----------------Y--------------------------------------------------------------- 473 (558)
Q Consensus 473 ----------------~--------------------------------------------------------------- 473 (558)
+
T Consensus 469 g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 469 NRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred CCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHH
Confidence 2
Q ss_pred --CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhcCCchhhhh
Q 008633 474 --PSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIK-IARQNDYARRL 550 (558)
Q Consensus 474 --~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~ 550 (558)
.||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.++.|+...|
T Consensus 549 ~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 549 SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred hcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 345566777888888888888888888888888888888888888888888888888888888887 67777776544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-56 Score=474.65 Aligned_cols=404 Identities=14% Similarity=0.169 Sum_probs=348.7
Q ss_pred CCCCHHHHHHHHHcCC--CchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 008633 125 VDLSLDVVGKVVNRGN--LSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLS 202 (558)
Q Consensus 125 ~~~~~~~v~~~l~~~~--~~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~ 202 (558)
+.++......++.... ...+.+..++..+. ..|+.||..+||.++..|++.|++++|.++|++|.+ ||..+|+
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n 193 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVE-SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWG 193 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHH
Confidence 4455555444444211 12345566665544 457888999999999999999999999999998853 7888999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhc-CCCCChhhHHHHHHHHHhcC
Q 008633 203 IVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKG-KVLFNVMTYNIVISGWSKLG 281 (558)
Q Consensus 203 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~~~~~~~~li~~~~~~g 281 (558)
.+|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.. +..+|..+||+||.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 99999999999999999999999888889999999999999999999988888887754 57789999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 282 QVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYK 361 (558)
Q Consensus 282 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 361 (558)
++++|.++|++|. .+|..+|++++.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++.
T Consensus 274 ~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 274 DIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred CHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 9999999999885 468899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 008633 362 GMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLS 441 (558)
Q Consensus 362 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 441 (558)
.|.+.|+.||..+|++||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999885 47888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008633 442 LTAYKLLLRRLSGFGKCGMLLDLWHEMQE-SGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSN 520 (558)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 520 (558)
..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.|+.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~ 502 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLT 502 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHH
Confidence 99999999999999999999999999975 689999999999999999999999999998765 57899999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCch
Q 008633 521 KLLASNKLESAYNLFRKIKIARQNDY 546 (558)
Q Consensus 521 ~~~~~g~~~~A~~~~~~m~~~~~~~~ 546 (558)
+|...|+++.|.++++++. ++.|+
T Consensus 503 a~~~~g~~~~a~~~~~~l~--~~~p~ 526 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLY--GMGPE 526 (697)
T ss_pred HHHHcCCcHHHHHHHHHHh--CCCCC
Confidence 9999999999999999887 44444
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-24 Score=235.78 Aligned_cols=367 Identities=13% Similarity=0.089 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC 242 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 242 (558)
...+..+...+...|++++|...++++...+ +.+..++..+...+.+.|+.++|..+++++.+.+ +.+...+..++..
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 576 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQY 576 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHH
Confidence 3444445555555555555555555554432 2244445555555555555555555555544432 2233444444555
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAI 322 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 322 (558)
|.+.|++++|..+++.+....+.+..+|..++.++.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555555544444444455555555555555555555555544432 123334444444444555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH-------------------------
Q 008633 323 EVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTR------------------------- 377 (558)
Q Consensus 323 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~------------------------- 377 (558)
.+++++.+.... +..++..++..+...|++++|.++++.+.+.+ +.+...+..
T Consensus 656 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 656 TSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 555544443221 33444444444444444444444444444432 233344444
Q ss_pred --------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008633 378 --------LISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLL 449 (558)
Q Consensus 378 --------li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 449 (558)
++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|+.++|..+|+++.+.. +.+..+++.+.
T Consensus 734 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~ 811 (899)
T TIGR02917 734 PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLA 811 (899)
T ss_pred CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4444444555555555544444432 2233444444444444555555555555554433 23444445555
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 450 RRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLE 529 (558)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 529 (558)
..+...|+ .+|+..++++.+.. +-+..++..+...+...|++++|..+++++++.+. .+..++..++.++.+.|+++
T Consensus 812 ~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~ 888 (899)
T TIGR02917 812 WLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKA 888 (899)
T ss_pred HHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHH
Confidence 55555555 44555555444432 22333444455555555555555555555555432 24555555555555555555
Q ss_pred HHHHHHHHHH
Q 008633 530 SAYNLFRKIK 539 (558)
Q Consensus 530 ~A~~~~~~m~ 539 (558)
+|.+++++|.
T Consensus 889 ~A~~~~~~~~ 898 (899)
T TIGR02917 889 EARKELDKLL 898 (899)
T ss_pred HHHHHHHHHh
Confidence 5555555543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-23 Score=231.40 Aligned_cols=369 Identities=12% Similarity=0.054 Sum_probs=255.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
+.+..+|+.+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.+ +.+..++..+
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 539 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILAL 539 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 3466677777888888888888888888777653 3355667777777777888888888888877654 3366777777
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRID 319 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 319 (558)
...+.+.|+.++|...++++....+.+...+..++..+.+.|++++|..+++.+.+.. +.+..+|..+..++...|+++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 8888888888888888887766666677777788888888888888888888877643 446677888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 320 DAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 320 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
+|...++.+.+.... +...+..+..+|.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|.++++.+.
T Consensus 619 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 619 KAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888766432 56677778888888888888888888887653 4456777888888888888888888888877
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH
Q 008633 400 DRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEI 479 (558)
Q Consensus 400 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 479 (558)
+.+ +.+...+..+...+...|++++|...++.+.+.+ |+..++..+..++.+.|++++|.+.++.+.+.. +.+...
T Consensus 697 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~ 772 (899)
T TIGR02917 697 KQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVL 772 (899)
T ss_pred hhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 664 3455566666677777777777777777776653 333455556666666666666666666665543 345555
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 480 YEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
+..+...|...|+.++|...|+++++.. +.+..++..+...+...|+ ++|...++++.
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 6666666666666666666666665543 2334455555555444444 44444444444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.1e-22 Score=197.87 Aligned_cols=308 Identities=16% Similarity=0.138 Sum_probs=211.8
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD---SLTFSFLIEGLGRAGRID 319 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~ 319 (558)
+...|++++|...|+++....|.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34455666666666666554444555666666666666666666666666665422111 234556666666667777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 320 DAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPN----MDTYTRLISGLLKSRKVADALEVF 395 (558)
Q Consensus 320 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~ 395 (558)
+|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...|..+...+.+.|++++|...+
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7777777666542 23455666677777777777777777777665432221 123445666667777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 008633 396 EEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPS 475 (558)
Q Consensus 396 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 475 (558)
+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+. .|
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 7776643 22344556666777777777777777777776542222456777888888889999999999988875 46
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhcCCchhhhhhc
Q 008633 476 DGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLA---SNKLESAYNLFRKIKIARQNDYARRLWR 552 (558)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 552 (558)
+...+..++..+.+.|++++|..+++++++. .|+..++..++..+.. .|+.+++..++++|.+.++.+++...+.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c~ 358 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRCR 358 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEECC
Confidence 6667788888999999999999999998876 5888888888877765 5688999999999999899988888888
Q ss_pred ccCC
Q 008633 553 SKGW 556 (558)
Q Consensus 553 ~~gw 556 (558)
.||.
T Consensus 359 ~cg~ 362 (389)
T PRK11788 359 NCGF 362 (389)
T ss_pred CCCC
Confidence 7774
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-20 Score=189.36 Aligned_cols=301 Identities=12% Similarity=0.022 Sum_probs=162.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc
Q 008633 170 VKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD---AESLNVVLWCLCQR 246 (558)
Q Consensus 170 i~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~ 246 (558)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|.++++.+.+.+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334556677888888888887764 23556777777777788888888888877776432211 24456666667777
Q ss_pred CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 008633 247 LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDS----LTFSFLIEGLGRAGRIDDAI 322 (558)
Q Consensus 247 ~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~ 322 (558)
|++++|..+|+++....+.+..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|.
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 77777777777766555556666666777777777777777777666654322211 12333444444555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008633 323 EVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRG 402 (558)
Q Consensus 323 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 402 (558)
+.++++.+.... +...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|+..|++++|...++++
T Consensus 201 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~---- 275 (389)
T PRK11788 201 ALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA---- 275 (389)
T ss_pred HHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH----
Confidence 555555443211 233444444555555555555555555543321111233444444444444444444444444
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 008633 403 IVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEY 482 (558)
Q Consensus 403 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 482 (558)
.+.. |+...+..++..+.+.|++++|..+++++.+. .|+...++.
T Consensus 276 -------------------------------~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~ 320 (389)
T PRK11788 276 -------------------------------LEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHR 320 (389)
T ss_pred -------------------------------HHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHH
Confidence 4432 23333344445555555555555555554443 345445555
Q ss_pred HHHHHHh---cCCHhHHHHHHHHHHhCCCCCC
Q 008633 483 VIAGLCN---IGQLENAVLVMEESLRKGFCPS 511 (558)
Q Consensus 483 li~~~~~---~g~~~~A~~~~~~m~~~g~~p~ 511 (558)
++..++. .|+.++++.++++|.++++.|+
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 4544443 3355555555555555444444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-20 Score=176.38 Aligned_cols=374 Identities=13% Similarity=0.097 Sum_probs=319.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHH-HH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESL-NV 238 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~-~~ 238 (558)
+.-..+|..+.+++-..|++++|+.+++.|.+.. +-.+..|..+..++...|+.+.|.+.|.+..+. .|+.... ..
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~ 189 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSD 189 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcc
Confidence 3456889999999999999999999999999874 236789999999999999999999999999885 4555443 44
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 008633 239 VLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD-SLTFSFLIEGLGRAGR 317 (558)
Q Consensus 239 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~ 317 (558)
+...+...|++++|...|.+..+..+-=.+.|+.|...+-..|+...|+..|++.++. .|+ ...|..|.+.|...+.
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhc
Confidence 5556667899999999998887766666788999999999999999999999999874 465 4678899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 318 IDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPN-MDTYTRLISGLLKSRKVADALEVFE 396 (558)
Q Consensus 318 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 396 (558)
+++|...+.+....... ....+..|...|...|.+|-|+..|++..+. .|+ ...|+.|..++-..|++.+|.+.+.
T Consensus 268 ~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred chHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 99999999988776433 5678888999999999999999999999986 454 6789999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 008633 397 EMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSD 476 (558)
Q Consensus 397 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 476 (558)
+..... .-.....+.|...+...|.++.|..+|....+.. +--....+.|...|-++|++++|+..|++..+. .|+
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~ 420 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPT 420 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--Cch
Confidence 998863 2345677888999999999999999999988753 223567888999999999999999999999875 666
Q ss_pred H-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhh
Q 008633 477 G-EIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARR 549 (558)
Q Consensus 477 ~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 549 (558)
. ..|+.+...|...|+.+.|+..+.+++.. .|. ...++.|...|-.+|+..+|++-++... .++||...
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL--klkPDfpd 491 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLKPDFPD 491 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccCCCCch
Confidence 4 48999999999999999999999999954 576 6889999999999999999999999987 46665543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-18 Score=181.35 Aligned_cols=331 Identities=12% Similarity=0.076 Sum_probs=267.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008633 167 NVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQR 246 (558)
Q Consensus 167 ~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 246 (558)
-.++..+.+.|++++|..+++....... -+...+..++.++...|++++|++.++++.+.. +.+...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 3456677889999999999999988743 345667777777888999999999999998864 33667888888999999
Q ss_pred CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 247 LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFD 326 (558)
Q Consensus 247 ~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 326 (558)
|++++|...+++.....|.+...+..++..+...|++++|...++.+...... +...+..+ ..+...|++++|...++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 99999999999998777778889999999999999999999999988765432 23333333 34788899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCC
Q 008633 327 TMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVAD----ALEVFEEMLDRG 402 (558)
Q Consensus 327 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~ 402 (558)
.+.+....++...+..+..++.+.|++++|+..++++.+.. +.+...+..+...+...|++++ |...+++..+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 98877544455556666788899999999999999998764 4567788889999999999986 799999988763
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH-HHHH
Q 008633 403 IVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDG-EIYE 481 (558)
Q Consensus 403 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~ 481 (558)
+.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|+..++.+.+. .|+. ..+.
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~ 356 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNR 356 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHH
Confidence 3356678888888999999999999999998864 445667778889999999999999999999875 3443 3344
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 482 YVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 482 ~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
.+..++...|+.++|...|+++.+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4567789999999999999999876
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-17 Score=175.75 Aligned_cols=367 Identities=13% Similarity=0.044 Sum_probs=270.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008633 166 YNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQ 245 (558)
Q Consensus 166 ~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 245 (558)
+......+.+.|++++|+..|++.... .|+...|..+..+|.+.|++++|++.+....+.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445566666777777777777776653 4566667777777777777777777777777653 2245566677777777
Q ss_pred cCCHhHHHHHHHHhh------------------------------cCCCCChhhHHHHHHH-------------------
Q 008633 246 RLHVGAASSLFNSMK------------------------------GKVLFNVMTYNIVISG------------------- 276 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~------------------------------~~~~~~~~~~~~li~~------------------- 276 (558)
.|++++|...|.... ...+.+...+..+...
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 777777765443221 0111111111111000
Q ss_pred -----------H------HhcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008633 277 -----------W------SKLGQVVEMERVLKEIVAEG-FSP-DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDT 337 (558)
Q Consensus 277 -----------~------~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 337 (558)
. ...+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...+++..+.... +.
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cH
Confidence 0 12357899999999998764 233 3466788888889999999999999999887433 46
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008633 338 NAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPL 417 (558)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 417 (558)
..|..+...+...|++++|...|+++.+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 688889999999999999999999998764 4567889999999999999999999999998864 33456677778888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcC
Q 008633 418 CSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGE------IYEYVIAGLCNIG 491 (558)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g 491 (558)
.+.|++++|+..+++..+.. +.+...|+.+...+...|++++|++.|++..+..-..+.. .++..+..+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 89999999999999998753 4567889999999999999999999999988753111111 1222223344579
Q ss_pred CHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 492 QLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 492 ~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
++++|..+++++++.. |+ ...+..+...+.+.|++++|.+++++..+.
T Consensus 523 ~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999998764 44 567889999999999999999999998754
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-17 Score=174.49 Aligned_cols=336 Identities=13% Similarity=0.069 Sum_probs=277.0
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHH
Q 008633 197 DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISG 276 (558)
Q Consensus 197 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~ 276 (558)
+..-...++..+.+.|++++|..+++........ +...+..++.+....|+++.|...|+++....|.+...+..+...
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~ 119 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASV 119 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3344566778888999999999999999876544 455666667777889999999999999998888889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 277 WSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDEC 356 (558)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 356 (558)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHH
Confidence 999999999999999998853 335677888999999999999999999988777544 33344333 347889999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHH
Q 008633 357 MKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHA----AMMMYKK 432 (558)
Q Consensus 357 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~----a~~~~~~ 432 (558)
...++.+.+..-.++...+..+..++...|++++|+..++++.+.. +.+...+..+...+...|++++ |...+++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9999998876433445555666788999999999999999999864 3456677788888999999986 8999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 008633 433 ARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSR 512 (558)
Q Consensus 433 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 512 (558)
+.+.. +.+...+..+...+...|++++|+..+++..+.. +.+...+..+..++.+.|++++|+..++++.+. .|+.
T Consensus 276 Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~ 351 (656)
T PRK15174 276 ALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVT 351 (656)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cccc
Confidence 98864 4467889999999999999999999999999864 445667888899999999999999999999976 4554
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 513 -LVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 513 -~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
..+..+..++...|+.++|.+.+++..+.
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34445677899999999999999998654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-16 Score=178.90 Aligned_cols=383 Identities=11% Similarity=0.031 Sum_probs=250.1
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHH------------HHHHHHHHH
Q 008633 144 EAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNP-DLETL------------SIVMDSFIR 210 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~-~~~t~------------~~li~~~~~ 210 (558)
+.|...|+-+.+.. +.+...+..+..++.+.|++++|...|++..+..... +...+ ......+.+
T Consensus 286 ~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~ 363 (1157)
T PRK11447 286 GKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK 363 (1157)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 56666666666542 3477888999999999999999999999988764221 11111 122445678
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 008633 211 AGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVL 290 (558)
Q Consensus 211 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 290 (558)
.|++++|++.|+++.+.. +.+...+..+..++...|++++|++.|++.....|.+...+..+...|. .++.++|..++
T Consensus 364 ~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l 441 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFI 441 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHH
Confidence 899999999999998764 3356777888899999999999999999887665666666665555543 23445555444
Q ss_pred HHHHHcCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 291 KEIVAEGFS--------PDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKG 362 (558)
Q Consensus 291 ~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 362 (558)
+.+...... .....+..+...+...|++++|.+.+++..+.... +...+..+...|.+.|++++|...+++
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 433211000 00112233334444555555555555555544322 334444455555555555555555555
Q ss_pred hhhCCCCCCHHHHH--------------------------------------------HHHHHHHhcCCHHHHHHHHHHH
Q 008633 363 MSSYNCEPNMDTYT--------------------------------------------RLISGLLKSRKVADALEVFEEM 398 (558)
Q Consensus 363 m~~~~~~p~~~~~~--------------------------------------------~li~~~~~~g~~~~A~~~~~~m 398 (558)
+.+.. +.+...+. .+...+...|+.++|..+++.
T Consensus 521 al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~- 598 (1157)
T PRK11447 521 LAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ- 598 (1157)
T ss_pred HHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-
Confidence 54321 11222221 233445566666666666551
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHH
Q 008633 399 LDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGE 478 (558)
Q Consensus 399 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 478 (558)
.+.+...+..+...+...|++++|+..|+++.+.. +.+...+..++..|...|++++|++.++...+.. +.+..
T Consensus 599 ----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~ 672 (1157)
T PRK11447 599 ----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLN 672 (1157)
T ss_pred ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChH
Confidence 23444556667777888899999999999888864 4467888888889999999999999999877642 33455
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 479 IYEYVIAGLCNIGQLENAVLVMEESLRKGF--CP---SRLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
.+..+..++...|++++|..++++++.... .| +...+..+...+...|++++|.+.+++..
T Consensus 673 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 673 TQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 677778888889999999999998886521 12 23466667888889999999999988875
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-16 Score=180.00 Aligned_cols=367 Identities=9% Similarity=-0.002 Sum_probs=277.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC-CHHHH-----------
Q 008633 169 IVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKF-DAESL----------- 236 (558)
Q Consensus 169 li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~----------- 236 (558)
....+...|++++|+..|++..+.. +.+..++..+...+.+.|++++|++.|++..+..... ....+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 3556778999999999999998864 3478899999999999999999999999998754322 11111
Q ss_pred -HHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008633 237 -NVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRA 315 (558)
Q Consensus 237 -~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 315 (558)
......+.+.|++++|...|+++....|.+...+..+...+...|++++|++.|++..+.. +.+...+..+...+. .
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 1234567789999999999999988777788899999999999999999999999999763 234556666666664 5
Q ss_pred CCHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 316 GRIDDAIEVFDTMKEKGCG--------PDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRK 387 (558)
Q Consensus 316 g~~~~a~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 387 (558)
++.++|..+++.+...... .....+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 6789999888765432100 012345667788999999999999999998864 3456778889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-------------------------------
Q 008633 388 VADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKV------------------------------- 436 (558)
Q Consensus 388 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------------------------------- 436 (558)
+++|...++++.+... .+...+..+...+...++.++|+..++.+...
T Consensus 511 ~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 9999999999887532 22222222222233344444444443322100
Q ss_pred --------CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 008633 437 --------GCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGF 508 (558)
Q Consensus 437 --------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 508 (558)
..+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..++..+...|++++|...++.+.+..
T Consensus 590 ~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~- 667 (1157)
T PRK11447 590 AEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA- 667 (1157)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-
Confidence 124455667778888999999999999999999864 5567889999999999999999999999887652
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 008633 509 CPSRLVYSKLSNKLLASNKLESAYNLFRKIKIAR 542 (558)
Q Consensus 509 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 542 (558)
+.+..++..+..++...|++++|.++++++....
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 2346677888899999999999999999988643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-16 Score=170.20 Aligned_cols=372 Identities=11% Similarity=0.019 Sum_probs=287.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
+.+...+..+...+...|++++|..+|++..+.. +.+...+..+...+...|+.++|+..++++.+.. +.+.. +..+
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~l 122 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLAL 122 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHH
Confidence 4566779999999999999999999999988763 3457778888899999999999999999998763 34566 8888
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDS------LTFSFLIEGLG 313 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~ 313 (558)
..++...|+.++|+..++++....|.+...+..+...+...|..++|++.++.... .|+. .....++....
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~ 199 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSF 199 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999988888888888899999999999999998876653 2332 11122222222
Q ss_pred -----hcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCHHHHHHH
Q 008633 314 -----RAGRI---DDAIEVFDTMKEK-GCGPDTN-AY----NAVISNYISVGDFDECMKYYKGMSSYNCE-PNMDTYTRL 378 (558)
Q Consensus 314 -----~~g~~---~~a~~~~~~m~~~-g~~p~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l 378 (558)
..+++ ++|++.++.+.+. ...|+.. .+ ...+.++...|++++|+..|+++.+.+-. |+. .-..+
T Consensus 200 ~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~l 278 (765)
T PRK10049 200 MPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWV 278 (765)
T ss_pred ccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHH
Confidence 22234 7788888888865 2222221 11 11133456779999999999999987522 332 22335
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-----------CCC---
Q 008633 379 ISGLLKSRKVADALEVFEEMLDRGIVP---STGTITSFLEPLCSYGPPHAAMMMYKKARKVGC-----------KLS--- 441 (558)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~--- 441 (558)
...|...|++++|+..|+++.+..... .......+..++...|++++|.++++.+.+... .|+
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 778999999999999999987653211 124455666678899999999999999887531 123
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 008633 442 LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSN 520 (558)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~ 520 (558)
...+..+...+...|+.++|+++++++.... +.+...+..+...+...|++++|++.++++++. .|+ ...+..++.
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~ 435 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAW 435 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHH
Confidence 2355677788999999999999999998764 567788999999999999999999999999976 466 677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHh
Q 008633 521 KLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 521 ~~~~~g~~~~A~~~~~~m~~~ 541 (558)
.+.+.|++++|..+++++.+.
T Consensus 436 ~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999863
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-16 Score=165.09 Aligned_cols=347 Identities=13% Similarity=0.019 Sum_probs=266.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 008633 200 TLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSK 279 (558)
Q Consensus 200 t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~ 279 (558)
.+......+.+.|++++|++.|++..+. .|+...|..+..+|.+.|++++|++.++......|.+...|..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4556677888999999999999999874 56788899999999999999999999999988777788899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCC----------------------------CC----CHHHHHHH-------------------
Q 008633 280 LGQVVEMERVLKEIVAEGF----------------------------SP----DSLTFSFL------------------- 308 (558)
Q Consensus 280 ~g~~~~A~~~~~~m~~~g~----------------------------~p----~~~t~~~l------------------- 308 (558)
.|++++|+..|......+- .| ........
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999876654432110 00 00000000
Q ss_pred --------HHH------HHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 008633 309 --------IEG------LGRAGRIDDAIEVFDTMKEKG-CGP-DTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNM 372 (558)
Q Consensus 309 --------l~~------~~~~g~~~~a~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 372 (558)
+.. ....+++++|.+.|+...+.+ ..| ....+..+...+...|++++|+..|++..+.. +-+.
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 000 012357889999999998765 223 45678888899999999999999999998763 3346
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008633 373 DTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRL 452 (558)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 452 (558)
..|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 688889999999999999999999998864 3456778888888999999999999999998865 44677788888999
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcC
Q 008633 453 SGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSR------LVYSKLSNKLLASN 526 (558)
Q Consensus 453 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~l~~~~~~~g 526 (558)
.+.|++++|+..+++..+.. +.+...|+.+...+...|++++|+..|++.++.....+. ..+...+..+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999998753 446788999999999999999999999999875311111 11222223344579
Q ss_pred CHHHHHHHHHHHHHhcCCchhhhhhccc
Q 008633 527 KLESAYNLFRKIKIARQNDYARRLWRSK 554 (558)
Q Consensus 527 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 554 (558)
++++|.+++++..+. .|+....|...
T Consensus 523 ~~~eA~~~~~kAl~l--~p~~~~a~~~l 548 (615)
T TIGR00990 523 DFIEAENLCEKALII--DPECDIAVATM 548 (615)
T ss_pred hHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence 999999999998754 45444444333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.6e-17 Score=155.44 Aligned_cols=357 Identities=14% Similarity=0.079 Sum_probs=296.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHh
Q 008633 171 KALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVG 250 (558)
Q Consensus 171 ~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~ 250 (558)
.++.+..+.+....--....+. .+.-.++|..+.+.+-..|+++.|+..++.+.+... -....|..+..++...|+.+
T Consensus 90 ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~ 167 (966)
T KOG4626|consen 90 AIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLE 167 (966)
T ss_pred hhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCc
Confidence 3455555555544433333333 233568999999999999999999999999998642 26788999999999999999
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 251 AASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD-SLTFSFLIEGLGRAGRIDDAIEVFDTMK 329 (558)
Q Consensus 251 ~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 329 (558)
.|.+.|.+...-.|......+.+...+-..|+.++|...|.+..+. .|. .+.|+.|.-.+-..|+...|+.-|++..
T Consensus 168 ~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv 245 (966)
T KOG4626|consen 168 LAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV 245 (966)
T ss_pred ccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhh
Confidence 9999998887765545555666777777789999999999988875 344 3568888888899999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH
Q 008633 330 EKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPS-TG 408 (558)
Q Consensus 330 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~ 408 (558)
+.... -...|-.|...|...+.++.|+..|.+..... +-....|..|...|...|..+-|+..+++.++. .|+ ..
T Consensus 246 kldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~ 321 (966)
T KOG4626|consen 246 KLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPD 321 (966)
T ss_pred cCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchH
Confidence 87543 35578889999999999999999999887653 334677888888899999999999999999885 455 57
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 008633 409 TITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSD-GEIYEYVIAGL 487 (558)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~ 487 (558)
.|+.+..++-..|++.+|++.|.+..... +....+.+.|...|...|.+++|..+|....+. .|. ...++.|...|
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIY 398 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHH
Confidence 89999999999999999999999998864 445678888999999999999999999998875 344 45789999999
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 488 CNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
-++|++++|+..+++++ .+.|+ ...|+.+.+.|-..|+.++|.+.+.+...
T Consensus 399 kqqgnl~~Ai~~Ykeal--rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEAL--RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HhcccHHHHHHHHHHHH--hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999 45788 68999999999999999999999988874
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-15 Score=162.97 Aligned_cols=381 Identities=10% Similarity=0.027 Sum_probs=287.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
+-+...-.-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|.+++++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3444555566778889999999999999998632 4566789999999999999999999999988763 3356778888
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRID 319 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 319 (558)
..++...|+.++|...+++.....|.+.. +..+...+...|+.++|+..++++.+.. +-+...+..+..++...+..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 99999999999999999999888777888 9999999999999999999999999864 224556667788888899999
Q ss_pred HHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHhhhC-CCCCCHH-HHH----HHH
Q 008633 320 DAIEVFDTMKEKGCGPDT------NAYNAVISNYI-----SVGDF---DECMKYYKGMSSY-NCEPNMD-TYT----RLI 379 (558)
Q Consensus 320 ~a~~~~~~m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~p~~~-~~~----~li 379 (558)
+|.+.++.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+. ..+
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l 244 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL 244 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence 99998886654 2221 11222233322 22234 7889899988854 1223321 111 113
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcC
Q 008633 380 SGLLKSRKVADALEVFEEMLDRGIV-PSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKL---SLTAYKLLLRRLSGF 455 (558)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~ 455 (558)
.++...|++++|+..|+.+.+.+.. |+... ..+..+|...|++++|+..|+++.+..... .......+..++...
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~-~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWAQ-RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 4556789999999999999987632 43322 224667899999999999999987643211 235566677788999
Q ss_pred CChhHHHHHHHHHHHCC-----------CCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 456 GKCGMLLDLWHEMQESG-----------YPSD---GEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNK 521 (558)
Q Consensus 456 g~~~~A~~~~~~m~~~~-----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 521 (558)
|++++|..+++.+.+.. -.|+ ...+..+...+...|+.++|++.++++.... +-+...+..+...
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l 402 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASV 402 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 99999999999998652 1123 2345667788899999999999999998763 3457899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCchhhhhh
Q 008633 522 LLASNKLESAYNLFRKIKIARQNDYARRLW 551 (558)
Q Consensus 522 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 551 (558)
+...|++++|++.+++..+ ..|+...++
T Consensus 403 ~~~~g~~~~A~~~l~~al~--l~Pd~~~l~ 430 (765)
T PRK10049 403 LQARGWPRAAENELKKAEV--LEPRNINLE 430 (765)
T ss_pred HHhcCCHHHHHHHHHHHHh--hCCCChHHH
Confidence 9999999999999999885 446654444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.8e-14 Score=147.98 Aligned_cols=385 Identities=8% Similarity=0.010 Sum_probs=235.4
Q ss_pred HHHHHHHHHHhcCCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 008633 144 EAMVLFFNWAIKHPNVAKDV--KSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQML 221 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~ 221 (558)
+.|...|+-+.+.. |+. ..+ .++..++..|+.++|+..+++.... ..........+...+...|++++|+++|
T Consensus 51 ~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 51 APVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred HHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35555555555432 332 233 8888888889999999999988722 1223444444566888889999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008633 222 GRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD 301 (558)
Q Consensus 222 ~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 301 (558)
+++.+.... +...+..++..+...++.++|++.++++....+ +...+-.++..+...++..+|++.++++.+.. +-+
T Consensus 126 ~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n 202 (822)
T PRK14574 126 QSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDP-TVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTS 202 (822)
T ss_pred HHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-chHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCC
Confidence 999887533 567777888888999999999999998876544 44455555555555666766999999998874 335
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------------C-----------------------------
Q 008633 302 SLTFSFLIEGLGRAGRIDDAIEVFDTMKEK--------------------G----------------------------- 332 (558)
Q Consensus 302 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--------------------g----------------------------- 332 (558)
...+..++.++.+.|-...|.++..+-... +
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 667788888889999888888775532100 0
Q ss_pred CCCCH-HH----HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----
Q 008633 333 CGPDT-NA----YNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRG----- 402 (558)
Q Consensus 333 ~~p~~-~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----- 402 (558)
-.|.. .. .--.+-++...|++.++++.|+.+...+.+.-..+-.++.++|...+++++|+.++.++....
T Consensus 283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~ 362 (822)
T PRK14574 283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFR 362 (822)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccC
Confidence 00110 01 111233445556666666666666655543333455566666666666666666666664432
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-----------CC--C-HHHHHHHHHHHHcCCChhHHHHHHHHH
Q 008633 403 IVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGC-----------KL--S-LTAYKLLLRRLSGFGKCGMLLDLWHEM 468 (558)
Q Consensus 403 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m 468 (558)
..++......|.-++...+++++|..+++.+.+... .| | ...+..++..+...|+..+|++.++++
T Consensus 363 ~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l 442 (822)
T PRK14574 363 NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDL 442 (822)
T ss_pred CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111222234555556666666666666666655211 01 1 122333455556666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 469 QESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 469 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
.... +-|......+...+...|++.+|...++.+... .|+ ..+....+.++...|++++|..+.+.+.
T Consensus 443 ~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 443 SSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5543 445666666666666666666666666555433 333 4555556666666666666666666655
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-13 Score=126.32 Aligned_cols=238 Identities=13% Similarity=0.211 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
.+..+|.+||.++|+--..+.|.+++++......+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 344555555555555555555555555555544455555555555443222 1144555555555555555555555
Q ss_pred HHHHhcCCHhHHH----HHHHHhhc-CCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHH----cCCCC----CHHHHH
Q 008633 241 WCLCQRLHVGAAS----SLFNSMKG-KVLFNVMTYNIVISGWSKLGQVVE-MERVLKEIVA----EGFSP----DSLTFS 306 (558)
Q Consensus 241 ~~~~~~~~~~~A~----~~~~~m~~-~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p----~~~t~~ 306 (558)
.+..+.|+++.|. +++.+|++ ++.|...+|..+|..+++.++..+ |..++.++.. ..++| |..-|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 5555555544433 23333433 355555555555555555554432 2233333322 11111 223344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 008633 307 FLIEGLGRAGRIDDAIEVFDTMKEKG----CGPD---TNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLI 379 (558)
Q Consensus 307 ~ll~~~~~~g~~~~a~~~~~~m~~~g----~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 379 (558)
..|..|.+..+.+-|.++..-+.... +.|+ ..-|..+..+.|.....+.-...|+.|.-.-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 45555555555555555544433221 1111 1223344445555555555555555555444445555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC
Q 008633 380 SGLLKSRKVADALEVFEEMLDRG 402 (558)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~m~~~~ 402 (558)
++.--.|.++-.-+++.+++..|
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhh
Confidence 55555555555555555555544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.8e-14 Score=128.63 Aligned_cols=405 Identities=15% Similarity=0.184 Sum_probs=261.8
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH---hcCChHHHHHHHHHHHHCC-------------
Q 008633 130 DVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALG---RRKFFDFMCNVLSDMAKEG------------- 193 (558)
Q Consensus 130 ~~v~~~l~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~---~~~~~~~a~~l~~~m~~~g------------- 193 (558)
.-+.+++..+... ++...+-. +++.++..+...--.+++.-+ ..+-.-.-|+.|-.|.+.|
T Consensus 120 ~nL~kmIS~~EvK-Ds~ilY~~--m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 120 NNLLKMISSREVK-DSCILYER--MRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred hHHHHHHhhcccc-hhHHHHHH--HHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 3344555555443 44444433 334455555555444444332 2233334455666665443
Q ss_pred ------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhc-CCCCC
Q 008633 194 ------VNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKG-KVLFN 266 (558)
Q Consensus 194 ------~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~-~~~~~ 266 (558)
.+-+..||..+|.++|+--..+.|.+++++......+.+..+||.+|.+-.-..+ .+++.+|.. +..||
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPN 272 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCc
Confidence 1234567888888888888888888888888777677788888888766433322 556666653 47788
Q ss_pred hhhHHHHHHHHHhcCCHHHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHH----HCCCCC--
Q 008633 267 VMTYNIVISGWSKLGQVVEM----ERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDD-AIEVFDTMK----EKGCGP-- 335 (558)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~m~----~~g~~p-- 335 (558)
..|+|+++.+..+.|+++.| .+++.+|++-|+.|...+|..+|..+++.++..+ +..+..++. .+.++|
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 88888888888888877654 4677788888888888888888888887777644 333333332 222222
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008633 336 --DTNAYNAVISNYISVGDFDECMKYYKGMSSYN----CEPN---MDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPS 406 (558)
Q Consensus 336 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 406 (558)
|...|...+..|....+.+-|.++-.-+.... +.|+ ..-|..+....|+....+.-...|+.|+-.-.-|+
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~ 432 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPH 432 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCC
Confidence 44566667777778888888877766554321 2233 23456677777888888888888888887777788
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-Ch--------hH-----HHHHH-------
Q 008633 407 TGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFG-KC--------GM-----LLDLW------- 465 (558)
Q Consensus 407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------~~-----A~~~~------- 465 (558)
..+...++++.-..|.++-.-+++..++..|.......-.-++..+++.. +. .. |..++
T Consensus 433 ~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~ 512 (625)
T KOG4422|consen 433 SQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQP 512 (625)
T ss_pred chhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 88888888888888888888888888888776666555555666666554 21 11 11111
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 466 HEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGF----CPSRLVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 466 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
.+|..... .....+...-.+.+.|+.++|.+++....+++- .|.......+++.-........|...++-|...
T Consensus 513 ~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 513 IRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 12222323 334566666777888888888888888765532 244455556677777888888888888888654
Q ss_pred cC
Q 008633 542 RQ 543 (558)
Q Consensus 542 ~~ 543 (558)
+.
T Consensus 591 n~ 592 (625)
T KOG4422|consen 591 NL 592 (625)
T ss_pred Cc
Confidence 44
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-12 Score=139.02 Aligned_cols=350 Identities=10% Similarity=0.016 Sum_probs=258.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008633 164 KSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCL 243 (558)
Q Consensus 164 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 243 (558)
.....+...+...|++++|+++|+++.+.. +-+...+..++..+...++.++|++.++++.+. .|+...+..++..+
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~ 179 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLN 179 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHH
Confidence 333444667888899999999999998874 335677778888889999999999999998875 45555555555555
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH--------------------HcC------
Q 008633 244 CQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIV--------------------AEG------ 297 (558)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------------------~~g------ 297 (558)
...++..+|++.++++....|.+...+..+..++.+.|-...|.++..+-. +.+
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccccc
Confidence 556666669999999988888888888999999999999888887654221 001
Q ss_pred -----------------------CCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008633 298 -----------------------FSPDSL-----TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYIS 349 (558)
Q Consensus 298 -----------------------~~p~~~-----t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 349 (558)
-.|... ...-.+-++...|++.++++.++.+...|.+....+-..+.++|..
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 112111 1112344567788899999999999988866555677888999999
Q ss_pred cCCHHHHHHHHHHhhhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCCH---HHH
Q 008633 350 VGDFDECMKYYKGMSSYN-----CEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGI-----------VPST---GTI 410 (558)
Q Consensus 350 ~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~~---~~~ 410 (558)
.++.++|+.+|+++.... ..++......|..+|...+++++|..+++++.+... .|+. ..+
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 999999999999986542 123444467888999999999999999999987311 1222 233
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 411 TSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNI 490 (558)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 490 (558)
..++..+...|+..+|++.++.+.... +-|......+.+.+...|.+.+|+..++...... +-+..+....+.++...
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhh
Confidence 445666778899999999999987754 6678888888999999999999999997776652 44556777788888889
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008633 491 GQLENAVLVMEESLRKGFCPSRLVYSKLSN 520 (558)
Q Consensus 491 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 520 (558)
|++++|..+.+.+.+. .|+......|-+
T Consensus 498 ~e~~~A~~~~~~l~~~--~Pe~~~~~~l~r 525 (822)
T PRK14574 498 QEWHQMELLTDDVISR--SPEDIPSQELDR 525 (822)
T ss_pred hhHHHHHHHHHHHHhh--CCCchhHHHHHH
Confidence 9999999999888865 576554444443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.6e-12 Score=136.41 Aligned_cols=383 Identities=13% Similarity=0.057 Sum_probs=267.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHH------------------------------HH
Q 008633 158 NVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVN-PDLETLSIV------------------------------MD 206 (558)
Q Consensus 158 ~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~-~~~~t~~~l------------------------------i~ 206 (558)
..+.+...+..++..|.+.|+.++|..+++++...-.. |...++.-+ +.
T Consensus 242 ~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (987)
T PRK09782 242 GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLP 321 (987)
T ss_pred hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHH
Confidence 44467788888899999999999999888888644211 222222221 33
Q ss_pred HHHHhCCHHHHHHHHH-----------------------------HHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 008633 207 SFIRAGQVYKAIQMLG-----------------------------RLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFN 257 (558)
Q Consensus 207 ~~~~~g~~~~A~~~~~-----------------------------~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 257 (558)
.+.+.++++.++++.. .|.+. .+-+....--+.-...+.|+.++|..+|+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~ 400 (987)
T PRK09782 322 VLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLL 400 (987)
T ss_pred HHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4445555554444421 11110 01133333334444567788999999998
Q ss_pred HhhcC---CCCChhhHHHHHHHHHhcCC---HHHHHHH----------------------HHHHHHc-CC-CC--CHHHH
Q 008633 258 SMKGK---VLFNVMTYNIVISGWSKLGQ---VVEMERV----------------------LKEIVAE-GF-SP--DSLTF 305 (558)
Q Consensus 258 ~m~~~---~~~~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~m~~~-g~-~p--~~~t~ 305 (558)
..... ...+....+-++..|.+.+. ..++..+ .+..... +. ++ +...|
T Consensus 401 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~ 480 (987)
T PRK09782 401 QRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAW 480 (987)
T ss_pred HhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHH
Confidence 87542 22234455567777777655 3333222 1111111 11 23 56677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc
Q 008633 306 SFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKS 385 (558)
Q Consensus 306 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 385 (558)
..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|+++... +|+...+..+..++.+.
T Consensus 481 ~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~ 555 (987)
T PRK09782 481 NRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAA 555 (987)
T ss_pred HHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHC
Confidence 777777766 88889999888877663 45444444556667999999999999998654 45556677778889999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 008633 386 RKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLW 465 (558)
Q Consensus 386 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 465 (558)
|+.++|...+++..+.+ +.+...+..+.......|++++|...+++..+.. |+...|..+...+.+.|+.++|+..+
T Consensus 556 Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l 632 (987)
T PRK09782 556 GNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDL 632 (987)
T ss_pred CCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999998864 2233333334444456699999999999998865 56888999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc
Q 008633 466 HEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQND 545 (558)
Q Consensus 466 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 545 (558)
++..+.. +.+...++.+...+...|+.++|+..++++++.. +-+...+..+..++...|++++|...+++..+ ..|
T Consensus 633 ~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P 708 (987)
T PRK09782 633 RAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID--DID 708 (987)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCC
Confidence 9999875 5567788899999999999999999999999763 23478899999999999999999999999984 445
Q ss_pred hhhhhhcc
Q 008633 546 YARRLWRS 553 (558)
Q Consensus 546 ~~~~~~~~ 553 (558)
+...+-..
T Consensus 709 ~~a~i~~~ 716 (987)
T PRK09782 709 NQALITPL 716 (987)
T ss_pred CCchhhhh
Confidence 54444333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-12 Score=138.93 Aligned_cols=352 Identities=9% Similarity=0.004 Sum_probs=269.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC---Hh
Q 008633 176 RKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDF--GLKFDAESLNVVLWCLCQRLH---VG 250 (558)
Q Consensus 176 ~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~~~~~~~~~ll~~~~~~~~---~~ 250 (558)
.+...++...++.|.+.. +-+......+--...+.|+.++|.++++..... ...++....+.++..|.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 466667777777776652 236666666666677899999999999998762 123355566688888887766 33
Q ss_pred HHHHH-------------------------HHHhhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 008633 251 AASSL-------------------------FNSMKGKVLF--NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSL 303 (558)
Q Consensus 251 ~A~~~-------------------------~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 303 (558)
++..+ +.......|+ +...|..+..++.. ++.++|...+.+.... .|+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchH
Confidence 33222 1112222355 77888999988887 8999999988887765 36765
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 008633 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLL 383 (558)
Q Consensus 304 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 383 (558)
....+...+...|++++|...++++... +|+...+..+...+.+.|+.++|...+++..+.+ +.+...+..+.....
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~ 587 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHH
Confidence 5545556667899999999999998665 3444556677888999999999999999998764 333344444444555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 008633 384 KSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLD 463 (558)
Q Consensus 384 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 463 (558)
..|++++|...+++..+. .|+...+..+..++.+.|+.++|+..+++..+.. +.+...++.+...+...|+.++|+.
T Consensus 588 ~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 669999999999999886 4678888888899999999999999999999875 5567888888889999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 464 LWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 464 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
.+++..+.. +-+...+..+..++...|++++|...+++.++. .|+ ..+.........+..+++.|.+-+++...
T Consensus 665 ~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 665 MLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999998864 456778999999999999999999999999976 466 46666777788888888888888777653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-12 Score=128.74 Aligned_cols=283 Identities=12% Similarity=0.066 Sum_probs=165.9
Q ss_pred cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHH
Q 008633 246 RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFS--FLIEGLGRAGRIDDAIE 323 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~ 323 (558)
.|+++.|.+.+.......+.....|........+.|+++.|.+.+.++.+. .|+...+. .....+...|++++|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 456666665555443321111222333344446666666666666666553 33432222 22445566666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 324 VFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNM-------DTYTRLISGLLKSRKVADALEVFE 396 (558)
Q Consensus 324 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~ 396 (558)
.++.+.+.... +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66666666533 5556666666666667777777666666665433211 122222333333334444444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 008633 397 EMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSD 476 (558)
Q Consensus 397 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 476 (558)
.+.+. .+.+......+...+...|+.++|.+++++..+. .++.... ++.+....++.+++++..+...+.. +-|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCC
Confidence 44322 2335555666666777777777777777766663 3343221 2223334577777777777777653 445
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 477 GEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
...+.++...+.+.|++++|.+.|+.+.+. .|+..++..+..++.+.|+.++|.+++++-.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556777778888888888888888888765 5777777788888888888888888877654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-11 Score=125.55 Aligned_cols=373 Identities=11% Similarity=0.066 Sum_probs=285.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008633 164 KSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCL 243 (558)
Q Consensus 164 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 243 (558)
...-...+.+...|++++|..++.+..+.. +-+...|.+|...|-..|+.+++...+-.+-... +-|...|..+....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 333334444455699999999999999885 4578899999999999999999998876665544 44778999999999
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCHH
Q 008633 244 CQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTF----SFLIEGLGRAGRID 319 (558)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~~~~~~g~~~ 319 (558)
.+.|.++.|.-.|.+.....|++...+---+..|-+.|+...|.+.|.++.....+.|..-+ -.+++.+...++-+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999888889888888899999999999999999999986432232222 33456677778889
Q ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH----------------------H
Q 008633 320 DAIEVFDTMKEKG-CGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTY----------------------T 376 (558)
Q Consensus 320 ~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----------------------~ 376 (558)
.|.+.++.....+ -..+...++.++..|.+...++.|......+......+|..-| .
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 9999998887632 2235557889999999999999999988887762222222111 1
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008633 377 ----RLISGLLKSRKVADALEVFEEMLDRGI--VPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLR 450 (558)
Q Consensus 377 ----~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 450 (558)
.+.-++...+..+....+.....+..+ .-+...|.-+..++...|++..|+.++..+......-+...|-.+..
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 122233444444444445555555553 33456788899999999999999999999998766667889999999
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHH
Q 008633 451 RLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESL--------RKGFCPSRLVYSKLSNKL 522 (558)
Q Consensus 451 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~l~~~~ 522 (558)
+|...|.+++|.+.|+...... +-+...--.|-..+.+.|+.++|.+.+..+. ..+..|+..........+
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 9999999999999999998763 3345566667778899999999999999854 234566677777888899
Q ss_pred HhcCCHHHHHHHHHHHH
Q 008633 523 LASNKLESAYNLFRKIK 539 (558)
Q Consensus 523 ~~~g~~~~A~~~~~~m~ 539 (558)
.+.|+.++-......|.
T Consensus 537 ~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLV 553 (895)
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 99999988766665554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-12 Score=128.60 Aligned_cols=291 Identities=10% Similarity=-0.031 Sum_probs=167.0
Q ss_pred cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 246 RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVF 325 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 325 (558)
.|+++.|.+.+.+.....+-....+-.......+.|+++.|.+.+.+..+....+...........+...|+++.|...+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56666666666555443332333344445556666666666666666654321111122223355555666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH-HHHH---HHHhcCCHHHHHHHHHHHHHC
Q 008633 326 DTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYT-RLIS---GLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 326 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~---~~~~~g~~~~A~~~~~~m~~~ 401 (558)
+.+.+..+. +..+...+...|...|++++|.+++..+.+.+.. +...+. .-.. ++...+..+++.+.+..+.+.
T Consensus 177 ~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 177 DKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 666666433 4555666666666666666666666666665432 222221 1111 112222233333344444433
Q ss_pred CC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH
Q 008633 402 GI---VPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAY-KLLLRRLSGFGKCGMLLDLWHEMQESGYPSDG 477 (558)
Q Consensus 402 ~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 477 (558)
.. +.+...+..+...+...|+.++|.+++++..+.........+ ....-.....++.+.+.+.++...+.. +-|.
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~ 333 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKP 333 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCCh
Confidence 21 125556666666667777777777777776664321111111 111111233466677777777776542 3344
Q ss_pred --HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 478 --EIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 478 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-.
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56778888999999999999999954433446888888899999999999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.8e-12 Score=128.74 Aligned_cols=377 Identities=15% Similarity=0.108 Sum_probs=230.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVN--PDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLN 237 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~--~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 237 (558)
..|....+.|.+.|.-.|++..++.+...+...... .-...|-.+.++|-..|++++|...|.+..+..-.--+..+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 356677788888888888888888888888765311 123457778888888888888888887777643222234455
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC----CHHHHHHHHHHHHHc-----------------
Q 008633 238 VVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLG----QVVEMERVLKEIVAE----------------- 296 (558)
Q Consensus 238 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~----------------- 296 (558)
.|...|.+.|+++.+...|+.+....|.+..+..+|...|...+ ..+.|..++.+..+.
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 67777888888888888888877666666777777766666554 334444444443332
Q ss_pred --------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHH
Q 008633 297 --------------------GFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK---GCGPDT------NAYNAVISNY 347 (558)
Q Consensus 297 --------------------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~p~~------~~~~~li~~~ 347 (558)
+..+.....|.+.......|++++|...|...... ...++. .+--.+...+
T Consensus 427 ~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 427 TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 22233333344444444445555555544444332 011111 1111122233
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------------
Q 008633 348 ISVGDFDECMKYYKGMSSYNCEPNM-DTYTRLISGLLKSRKVADALEVFEEMLDR------------------------- 401 (558)
Q Consensus 348 ~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------- 401 (558)
-..++.+.|.+.|..+.+. .|+- ..|..+....-..+...+|...+++....
T Consensus 507 E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc
Confidence 3333334444443333322 1111 11111111111113444555554443221
Q ss_pred ----------CCCCCHHHHHHHHHHHHh------------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChh
Q 008633 402 ----------GIVPSTGTITSFLEPLCS------------YGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCG 459 (558)
Q Consensus 402 ----------~~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 459 (558)
...+|.....+|...|.. .+..+.|+++|.++.+.. +-|..+-|.+.-.++..|++.
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCch
Confidence 112344444444443332 234567888888888765 557778888888899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 460 MLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK-GFCPSRLVYSKLSNKLLASNKLESAYNLFRKI 538 (558)
Q Consensus 460 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 538 (558)
+|..+|.+..+... -+..+|-.+.++|..+|++..|++.|+...++ ...-+..+...|.+++.+.|++.+|.+.+...
T Consensus 664 ~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 664 EARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred HHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999998643 24558999999999999999999999998876 33446888999999999999999999988776
Q ss_pred HH
Q 008633 539 KI 540 (558)
Q Consensus 539 ~~ 540 (558)
..
T Consensus 743 ~~ 744 (1018)
T KOG2002|consen 743 RH 744 (1018)
T ss_pred HH
Confidence 64
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.3e-12 Score=113.07 Aligned_cols=302 Identities=15% Similarity=0.162 Sum_probs=210.9
Q ss_pred cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHH
Q 008633 246 RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDS------LTFSFLIEGLGRAGRID 319 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~g~~~ 319 (558)
..+.++|.++|-+|....+.+..+--+|.+.|.+.|..+.|+++...+.+. ||. .....|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 455667777777776655555566667777777777777777777777654 321 22344556677778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHH
Q 008633 320 DAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNM----DTYTRLISGLLKSRKVADALEVF 395 (558)
Q Consensus 320 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~ 395 (558)
.|+++|..+.+.|.- -......|+..|-...+|++|+++-+++.+.+-.+.. ..|--+...+....+++.|..++
T Consensus 125 RAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 888888777765422 3445667778888888888888888877765533322 23445555556667888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 008633 396 EEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPS 475 (558)
Q Consensus 396 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 475 (558)
.+..+.+. -....-..+.+.....|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+.. +
T Consensus 204 ~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~ 280 (389)
T COG2956 204 KKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--T 280 (389)
T ss_pred HHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--C
Confidence 88777531 12222234555667788888888888888887766667778888889999999999999998888753 3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhcCCchhhhhhc
Q 008633 476 DGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLL---ASNKLESAYNLFRKIKIARQNDYARRLWR 552 (558)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 552 (558)
+...-..+-..-....-.+.|..++.+-+.+ .|+...+..|+..-. ..|...+-...++.|....++.....-++
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~ 358 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQ 358 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceec
Confidence 4444444544444555567777777766655 599999999988764 45678888999999999888888888888
Q ss_pred ccCC
Q 008633 553 SKGW 556 (558)
Q Consensus 553 ~~gw 556 (558)
.||+
T Consensus 359 ~CGF 362 (389)
T COG2956 359 NCGF 362 (389)
T ss_pred ccCC
Confidence 8885
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-11 Score=122.18 Aligned_cols=291 Identities=11% Similarity=0.091 Sum_probs=153.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHhHHH
Q 008633 176 RKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESL--NVVLWCLCQRLHVGAAS 253 (558)
Q Consensus 176 ~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~--~~ll~~~~~~~~~~~A~ 253 (558)
.|+++.|.+.+....+.+-. ....|.....+..+.|+++.|.+.+.++.+. .|+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 35555555555544332111 1122222233335555566666665555543 2222211 12234455555555555
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008633 254 SLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGC 333 (558)
Q Consensus 254 ~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 333 (558)
..++++.+..|-+......+...|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------ 228 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------ 228 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH------------------------
Confidence 5555555544545555555555555555555555555555554332111 111000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008633 334 GPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSF 413 (558)
Q Consensus 334 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 413 (558)
..+|..++.......+.+...++++.+.+. .+.+......+..++...|+.++|.+++++..+. .++.... +
T Consensus 229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~ 300 (398)
T PRK10747 229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--L 300 (398)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--H
Confidence 012223333333334455555555555432 1345556666666677777777777777666653 3344221 2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 414 LEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQL 493 (558)
Q Consensus 414 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 493 (558)
+.+.+..++.+++.+..+...+.. +-|...+..+...+.+.+++++|.+.|+...+. .|+...|..+...+.+.|+.
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCH
Confidence 223334466667777666666543 345556666677777777777777777777764 56777777777777777777
Q ss_pred hHHHHHHHHHHh
Q 008633 494 ENAVLVMEESLR 505 (558)
Q Consensus 494 ~~A~~~~~~m~~ 505 (558)
++|..++++...
T Consensus 378 ~~A~~~~~~~l~ 389 (398)
T PRK10747 378 EEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHh
Confidence 777777776653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-11 Score=122.41 Aligned_cols=332 Identities=13% Similarity=0.079 Sum_probs=261.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC
Q 008633 203 IVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQ 282 (558)
Q Consensus 203 ~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~ 282 (558)
...+.....|+.++|.+++.++++.. +.....|-+|...|-..|+.+++...+-....-.|-|...|..+.....+.|+
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc
Confidence 33344444599999999999999875 44778999999999999999999988776666677788999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHHHHH
Q 008633 283 VVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAY----NAVISNYISVGDFDECMK 358 (558)
Q Consensus 283 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~A~~ 358 (558)
+++|.-.|.+..+.. +++...+---+..|-+.|+...|..-|.++.....+.|..-+ -..++.+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999874 345555556677888999999999999999888553333322 234566777888899999
Q ss_pred HHHHhhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------------CCCCCHHHH
Q 008633 359 YYKGMSSYN-CEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR---------------------------GIVPSTGTI 410 (558)
Q Consensus 359 ~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------------~~~p~~~~~ 410 (558)
.++.....+ -..+...++.++..|.+...++.|......+... ++.++...+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 999887622 2455667889999999999999999988888761 122222221
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008633 411 TSFLEPLCSYGPPHAAMMMYKKARKVG--CKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLC 488 (558)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 488 (558)
.. .-++......+....+.....+.+ ..-+...|.-+..+|...|++.+|+.++..+.....--+...|..+..+|.
T Consensus 382 rl-~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 RL-MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred hH-hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 22 223445555566666666666665 344577899999999999999999999999998765667789999999999
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 489 NIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
..|.+++|++.++..+.. .|+ ...-.+|...+.+.|++++|.+.++.|.
T Consensus 461 ~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999965 454 5677788888999999999999999876
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-11 Score=122.96 Aligned_cols=301 Identities=12% Similarity=0.059 Sum_probs=149.6
Q ss_pred HHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 166 YNVIVKALG--RRKFFDFMCNVLSDMAKEGVNPD-LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC 242 (558)
Q Consensus 166 ~~~li~~~~--~~~~~~~a~~l~~~m~~~g~~~~-~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 242 (558)
+..+.+++. ..|+++.|.+.+.+..+.. |+ ...+-....+..+.|+.+.|.+.+.+..+....+...+.-.....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 344444442 4566666666666555442 33 233334455555666666666666666543222222233334555
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HhcCCH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFS-FLIEGL---GRAGRI 318 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~---~~~g~~ 318 (558)
+...|+++.|.+.++.+.+..|-+...+..+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666665555555566666666666666666666666666665432 221111 001110 111111
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 319 DDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEM 398 (558)
Q Consensus 319 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (558)
+++.+.+..+ ++...+. .+.+...+..+...+...|+.++|.+++++.
T Consensus 242 ~~~~~~L~~~-------------------------------~~~~p~~-~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~ 289 (409)
T TIGR00540 242 DEGIDGLLNW-------------------------------WKNQPRH-RRHNIALKIALAEHLIDCDDHDSAQEIIFDG 289 (409)
T ss_pred hcCHHHHHHH-------------------------------HHHCCHH-HhCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 1111122222 2221110 0124455555555555555555555555555
Q ss_pred HHCCCCCCHHH--H-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 008633 399 LDRGIVPSTGT--I-TSFLEPLCSYGPPHAAMMMYKKARKVGCKLSL--TAYKLLLRRLSGFGKCGMLLDLWHEMQESGY 473 (558)
Q Consensus 399 ~~~~~~p~~~~--~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 473 (558)
.+.. |+... + ....-.....++.+.+.+.++...+.. +-+. ....++...+.+.|++++|.+.|+.......
T Consensus 290 l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~ 366 (409)
T TIGR00540 290 LKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE 366 (409)
T ss_pred HhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc
Confidence 5542 22221 0 111111222345555666665555432 2233 4455666666777777777777774333333
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 474 PSDGEIYEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 474 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
.|+...+..+...+.+.|+.++|.+++++..
T Consensus 367 ~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 367 QLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666677777777777777777777654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=138.25 Aligned_cols=261 Identities=18% Similarity=0.211 Sum_probs=101.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 272 IVISGWSKLGQVVEMERVLKEIVAEGFSPDS-LTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV 350 (558)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 350 (558)
.+...+.+.|++++|++++++.......|+. .-|..+...+...++.+.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4466666777777777777554433212333 33334444555667777777777777766544 45566666666 677
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 008633 351 GDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRG-IVPSTGTITSFLEPLCSYGPPHAAMMM 429 (558)
Q Consensus 351 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~ 429 (558)
+++++|.+++....+. .++...+..++..+...++++++.++++++.... ...+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7888888877766554 3455666777777788888888888888776532 234556667777777788888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 008633 430 YKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFC 509 (558)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 509 (558)
++++.+.. +-+......++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|+.++++..+.. +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 88887764 3356777778888888888888888887776543 4556678888888889999999999999888753 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 510 PSRLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 510 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
.|+.+...+.+++...|+.++|.++..+..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 468888888899999999999988887654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.4e-11 Score=119.57 Aligned_cols=407 Identities=13% Similarity=0.062 Sum_probs=278.0
Q ss_pred CCCchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHhCCHHH
Q 008633 139 GNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKE--GVNPDLETLSIVMDSFIRAGQVYK 216 (558)
Q Consensus 139 ~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~--g~~~~~~t~~~li~~~~~~g~~~~ 216 (558)
+..+-+.|..-|.++.++. ++|+-..--=....-..+++..|+.+|...... ...||+.. .+...+.+.|+.+.
T Consensus 142 ~~~~~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~ 217 (1018)
T KOG2002|consen 142 GDKSMDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEK 217 (1018)
T ss_pred CCccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhh
Confidence 3333356666777777764 355444333333345678999999999997654 34555432 23356678999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 217 AIQMLGRLEDFGLKFDAESLNVVLWCLCQR---LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEI 293 (558)
Q Consensus 217 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~---~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 293 (558)
|+..|.+..+.+. -++.++..|...-... ..+..+..++...-...+-|++..+.|...|.-.|++..++.+...+
T Consensus 218 a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~a 296 (1018)
T KOG2002|consen 218 ALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHA 296 (1018)
T ss_pred HHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 9999999998643 2333333333322222 34566777777665556668899999999999999999999999998
Q ss_pred HHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 008633 294 VAEGFS--PDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPN 371 (558)
Q Consensus 294 ~~~g~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 371 (558)
...... .-...|-.+.++|-..|++++|...|.+..+....--+..+-.|..+|.+.|+++.+...|+.+.+.. +-+
T Consensus 297 i~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~ 375 (1018)
T KOG2002|consen 297 IKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNN 375 (1018)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cch
Confidence 875311 12345778999999999999999999887766433224455678899999999999999999998763 445
Q ss_pred HHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH----HcCCCCCHH
Q 008633 372 MDTYTRLISGLLKSR----KVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKAR----KVGCKLSLT 443 (558)
Q Consensus 372 ~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ 443 (558)
..+...|...|...+ ..+.|..++.+..+.- +.|...|-.+...+. .++...++..|..+. ..+..+.+.
T Consensus 376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E 453 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPE 453 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 566667777776664 5677777777776653 445566666655444 455555577776554 345568889
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HH
Q 008633 444 AYKLLLRRLSGFGKCGMLLDLWHEMQES---GYPSDG------EIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RL 513 (558)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 513 (558)
..|.+.......|.+++|...|+..... ...+|. .+-..+...+-..++.+.|.+.|+..++. .|. ..
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId 531 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYID 531 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHH
Confidence 9999999999999999999999887654 122232 12233445556678899999999998876 466 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhhhcccC-CC
Q 008633 514 VYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRLWRSKG-WH 557 (558)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~g-w~ 557 (558)
.|..++......+...+|...++.... +.......|.-.| ||
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLH 574 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHH
Confidence 565665444456788888888888764 3333334444444 44
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-14 Score=135.99 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHH
Q 008633 170 VKALGRRKFFDFMCNVL 186 (558)
Q Consensus 170 i~~~~~~~~~~~a~~l~ 186 (558)
...+.+.|++++|++++
T Consensus 15 A~~~~~~~~~~~Al~~L 31 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVL 31 (280)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 33333444444444444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-10 Score=108.47 Aligned_cols=362 Identities=10% Similarity=0.042 Sum_probs=242.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHH--H
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESL--N 237 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~--~ 237 (558)
..|...+-...-++.+.|....|.+.|...... .+-.-.+|..|...+. +.+ +...... |...|.... -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~~e----~~~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---DIE----ILSILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---hHH----HHHHHHh-cCcccchHHHHH
Confidence 344444444444455556666666666555543 2233344444433331 111 1111111 112111111 1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHh
Q 008633 238 VVLWCLCQRLHVGAASSLFNSMKGK-VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFS--PDSLTFSFLIEGLGR 314 (558)
Q Consensus 238 ~ll~~~~~~~~~~~A~~~~~~m~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~ 314 (558)
.+..++-...+.+++.+-.+...+. .+.+...-+....+.-...++++|+.+|+++.+...- -|..+|+.++-.--.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 2334455555666776666666554 4434444444455556677888888888888876311 256677766644322
Q ss_pred cCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 315 AGRIDD-AIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALE 393 (558)
Q Consensus 315 ~g~~~~-a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 393 (558)
..++.- |..+++ -... -+.|+.++.+-|.-.++.++|..+|++..+.+ +.....|+.|..-|....+...|++
T Consensus 312 ~skLs~LA~~v~~---idKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 312 KSKLSYLAQNVSN---IDKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hHHHHHHHHHHHH---hccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 222111 222211 1112 34577788889999999999999999999876 5567889999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 008633 394 VFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGY 473 (558)
Q Consensus 394 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 473 (558)
-++..++-+ +-|-..|-.+.++|...+...-|+-.|+++.+.. +.|...|.+|..+|.+.++.++|++.|+.....|
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 999999864 5677889999999999999999999999998854 5688999999999999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 474 PSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK----GFCPS--RLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 474 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
..+...+..+...|-+.++.++|...+++.++. |...+ .....-|..-+.+.+++++|.....+..
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 346689999999999999999999999988762 33222 2233336666788899988887665554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.2e-11 Score=110.73 Aligned_cols=374 Identities=13% Similarity=0.114 Sum_probs=210.7
Q ss_pred HHHHHHHHHHhcCC-CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 008633 144 EAMVLFFNWAIKHP-NVAKD--VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQM 220 (558)
Q Consensus 144 ~~~~~ff~~~~~~~-~~~~~--~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~ 220 (558)
..|..|++.+..+- .+..+ ....|.+.-.+.+.|+++.|+.-|+...+. .|+..+-..|+-.+...|+.++..+.
T Consensus 254 skaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkea 331 (840)
T KOG2003|consen 254 SKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEA 331 (840)
T ss_pred HHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHH
Confidence 35667777666431 11111 122344444456778888888888777665 46666544455555556777777777
Q ss_pred HHHHHhCCCCCC------------HHHHHHHH-----HHHHhcCCHhHHHHHHH---HhhcC-CCCChhh---H------
Q 008633 221 LGRLEDFGLKFD------------AESLNVVL-----WCLCQRLHVGAASSLFN---SMKGK-VLFNVMT---Y------ 270 (558)
Q Consensus 221 ~~~~~~~g~~~~------------~~~~~~ll-----~~~~~~~~~~~A~~~~~---~m~~~-~~~~~~~---~------ 270 (558)
|.+|......+| ....+--| .-.-+... ..|.+..- ++... +.|+... |
T Consensus 332 f~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk 410 (840)
T KOG2003|consen 332 FQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLK 410 (840)
T ss_pred HHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHH
Confidence 777765433222 22222211 11111111 11111111 11110 1111110 0
Q ss_pred ------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHH-------------------------
Q 008633 271 ------------NIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFL--IEG------------------------- 311 (558)
Q Consensus 271 ------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l~~------------------------- 311 (558)
-.-...+.+.|+++.|+++++-+.+..-+.-...-+.| +..
T Consensus 411 ~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~ 490 (840)
T KOG2003|consen 411 ASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA 490 (840)
T ss_pred HhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH
Confidence 01123466788888888887766654322111111111 110
Q ss_pred ---------HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 008633 312 ---------LGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGL 382 (558)
Q Consensus 312 ---------~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 382 (558)
....|++++|.+.+.+.....-.-....|| +.-.+-..|++++|++.|-++..- +.-++.+.-.+...|
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiy 568 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIY 568 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 012466777777777766552221122222 223355667777777777665432 123555566666777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 008633 383 LKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLL 462 (558)
Q Consensus 383 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 462 (558)
-...+...|++++.+.... ++.|......|...|-+.|+..+|.+.+-.--+. ++-+..+...|...|....-+++++
T Consensus 569 e~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai 646 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAI 646 (840)
T ss_pred HHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHH
Confidence 7777777777777665443 3445666777777777778877777766544332 3556777777777777777788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 463 DLWHEMQESGYPSDGEIYEYVIAGL-CNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNK 527 (558)
Q Consensus 463 ~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 527 (558)
.+|++..- +.|+..-|..||..| .+.|++..|..+++...++ ++-|.....-|++.+...|.
T Consensus 647 ~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 647 NYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 88877654 377888888777644 4668888888888877664 56667777777777777665
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8e-11 Score=105.66 Aligned_cols=289 Identities=14% Similarity=0.079 Sum_probs=188.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHhH
Q 008633 175 RRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD---AESLNVVLWCLCQRLHVGA 251 (558)
Q Consensus 175 ~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~~~~~~ 251 (558)
-.++.++|+++|-+|.+.. +-+.++..+|.+.|-+.|..+.|+.+++.+.+..--+. ....-.|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3578899999999998853 33556777888999999999999999999886421111 2334456666788888888
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 252 ASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDS----LTFSFLIEGLGRAGRIDDAIEVFDT 327 (558)
Q Consensus 252 A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~ 327 (558)
|+.+|..+......-......|+..|-+..+|++|+++-+++.+.|-++.. .-|.-+...+....+.+.|..++.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 888888887643334556777888888888888888888888876544432 2244455555556777888888887
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008633 328 MKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPST 407 (558)
Q Consensus 328 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 407 (558)
..+.+.. ++..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|...|+.++....+..+.+....++.
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 7766443 444555667777788888888888888877653333455667777888888888888888777765433333
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CChhHHHHHHHHHH
Q 008633 408 GTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGF---GKCGMLLDLWHEMQ 469 (558)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~ 469 (558)
. ..+-+......-.+.|...+.+-... +|+...+..+|..-... |...+-+.+++.|.
T Consensus 285 ~--l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 285 E--LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred H--HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 2 22222222333334444444433332 46666666666654332 33444455555554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-10 Score=106.63 Aligned_cols=289 Identities=13% Similarity=0.062 Sum_probs=140.6
Q ss_pred CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 247 LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFD 326 (558)
Q Consensus 247 ~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 326 (558)
|++..|+++..+-.+..+.....|..-+.+--..|+.+.+..++.+..+.--.++...+-+..+.....|+.+.|..-++
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 44444444444433333333334444444444445555555555544443222333344444444444555555555444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 327 TMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNM-------DTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 327 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
++.+.+.. +.........+|.+.|++.....++.+|.+.|.-.+. .+|..+++-....+..+.-...+++.-
T Consensus 178 ~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 178 QLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 44444333 3344444455555555555555555555544433222 223333333333333333333333332
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH-CCCCCCHH
Q 008633 400 DRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQE-SGYPSDGE 478 (558)
Q Consensus 400 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~ 478 (558)
.+ .+-+...-.+++.-+...|+.++|.++.++..+.+..+.... .-.+.+-++...-++..+.-.. .+ .++.
T Consensus 257 r~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~--~~p~ 329 (400)
T COG3071 257 RK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHP--EDPL 329 (400)
T ss_pred HH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCC--CChh
Confidence 22 222333334444445555555555555555555444333111 1123344444444444443332 32 2335
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc
Q 008633 479 IYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQND 545 (558)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 545 (558)
.+.+|...|.+.+.+.+|...|+..++. .|+..+|..+..++.+.|+.++|.+..++....-..|
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 6677777777777777777777766654 5777777777777777777777777777665444433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.3e-11 Score=109.92 Aligned_cols=217 Identities=12% Similarity=0.160 Sum_probs=163.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 279 KLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMK 358 (558)
Q Consensus 279 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 358 (558)
.+|++++|.+.|++.....-.-....||+= -.+-..|++++|++.|-++...-.. ++.+...+.+.|....+...|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~il~n-n~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAILLN-NAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhhCHHHHHH
Confidence 368899999999998876433333334432 3456789999999998776543222 66777788899999999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 008633 359 YYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGC 438 (558)
Q Consensus 359 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 438 (558)
++.+.... ++.|.....-|...|-+.|+-..|.+.+.+-.+. ++.+..+...|...|....-+++++.+|++..- +
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 99877653 4567788888999999999999999988776554 456778888888888888888999999987755 4
Q ss_pred CCCHHHHHHHHHHH-HcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008633 439 KLSLTAYKLLLRRL-SGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEES 503 (558)
Q Consensus 439 ~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 503 (558)
.|+..-|..++..| .+.|++++|.++|+.+... ++.|..+...|++.+...|- .+|.++-+++
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~kl 719 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADKL 719 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHHH
Confidence 68999998877654 5579999999999998764 57788888888888877763 3344444433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.9e-10 Score=102.85 Aligned_cols=303 Identities=14% Similarity=0.114 Sum_probs=189.6
Q ss_pred HHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008633 167 NVIVKALGR--RKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLC 244 (558)
Q Consensus 167 ~~li~~~~~--~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 244 (558)
..+.+++.+ .|+|.+|.++..+-.+.+-. ....|..-+.+.-..|+.+.+-.++.++.+..-.++...+-+......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 344445433 57888888888777666533 345566666777777888888888887777544556666777777777
Q ss_pred hcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008633 245 QRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEV 324 (558)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 324 (558)
..|+.+.|..-.++..+..|-+........++|.+.|++.+...++..|.+.|.--+... ..+
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l 227 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL 227 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH
Confidence 777777777777777666666777777777788888888888777777777765433211 000
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008633 325 FDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIV 404 (558)
Q Consensus 325 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 404 (558)
...+|+.+++-....+..+.-...++.....- +-+...-.+++.-+.+.|+.++|.++.++..+.+..
T Consensus 228 -----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D 295 (400)
T COG3071 228 -----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD 295 (400)
T ss_pred -----------HHHHHHHHHHHHhccccchHHHHHHHhccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 11244555554444444444444555544321 233444455666666667777777777666666554
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008633 405 PSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVI 484 (558)
Q Consensus 405 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 484 (558)
|.. ..++ .+.+.++.+.-++..+.-.+.. +-++..+..|...|.+.+.+.+|...|+...+. .|+..+|+.+.
T Consensus 296 ~~L---~~~~-~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la 368 (400)
T COG3071 296 PRL---CRLI-PRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELA 368 (400)
T ss_pred hhH---HHHH-hhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHH
Confidence 441 1222 3445566666555555544422 233466666777777777777777777765544 56777777777
Q ss_pred HHHHhcCCHhHHHHHHHHHHhC
Q 008633 485 AGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
+++.+.|+..+|....++....
T Consensus 369 ~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 369 DALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHcCChHHHHHHHHHHHHH
Confidence 7777777777777777776543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-09 Score=103.19 Aligned_cols=305 Identities=12% Similarity=0.056 Sum_probs=166.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Q 008633 157 PNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDM----AKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD 232 (558)
Q Consensus 157 ~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m----~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~ 232 (558)
..++.+...|-+-...=-.+|+.+....++++- ...|+..+...|..=...|-..|..-.+..+.......|++-.
T Consensus 434 e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee 513 (913)
T KOG0495|consen 434 EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE 513 (913)
T ss_pred hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc
Confidence 345666777776666666778877777776654 4457777777777777777777777777777766666665432
Q ss_pred --HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008633 233 --AESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIE 310 (558)
Q Consensus 233 --~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 310 (558)
..+|+.-...|.+.+.++-|..+|.....-.|-+...|...+..=-..|..++...+|.+.... ++-....|.....
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ak 592 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAK 592 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHH
Confidence 2455556666666666666666666555555555555555555555555555555555555543 1223333444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 311 GLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVAD 390 (558)
Q Consensus 311 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 390 (558)
.+-..|+...|..++....+.... +...|-.-+..-....+++.|..+|.+.... .|+...|.--+...--.++.++
T Consensus 593 e~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHH
Confidence 444555555555555555554333 4445555555555555555555555555443 3444444443333334445555
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHh----------------------------------cCChhHHHHHHHHHHH
Q 008633 391 ALEVFEEMLDRGIVPS-TGTITSFLEPLCS----------------------------------YGPPHAAMMMYKKARK 435 (558)
Q Consensus 391 A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~----------------------------------~g~~~~a~~~~~~~~~ 435 (558)
|.+++++..+. .|+ ...|..+.+.+-+ .|.+-.|..++++..-
T Consensus 670 A~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 670 ALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 55555444442 222 1223333333333 4445555555555444
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 008633 436 VGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEM 468 (558)
Q Consensus 436 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 468 (558)
.+ +-+...|-..|++-.+.|+.+.|..+..+.
T Consensus 748 kN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 748 KN-PKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred cC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 334455555555555556655555544443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-09 Score=105.33 Aligned_cols=337 Identities=9% Similarity=-0.013 Sum_probs=243.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 008633 199 ETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWS 278 (558)
Q Consensus 199 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~ 278 (558)
..|......=-..|..+....+++++...- +-....|-.....+-..|++..|..++.+.-+..|.+...|-.-+..-.
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~ 629 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEF 629 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhh
Confidence 334433333334455555555555555432 2233344444555556677777777777776666667777777777778
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 279 KLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMK 358 (558)
Q Consensus 279 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 358 (558)
.+.+++.|..+|.+.... .|+...|..-++..--.+..++|.+++++..+. ++.-...|-.+...+-+.++++.|.+
T Consensus 630 en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred ccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHH
Confidence 888888888888777654 466666666666666677888888888777765 23234567777778888888888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 008633 359 YYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGC 438 (558)
Q Consensus 359 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 438 (558)
.|..-.+. |+-.+-.|-.|...--+.|.+-.|..+++...-++ +-+...|-..|+.-.+.|..+.|..+..++.+. +
T Consensus 707 aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-c 783 (913)
T KOG0495|consen 707 AYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-C 783 (913)
T ss_pred HHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence 87765543 34455667777777778889999999999988775 456788899999999999999999999888774 5
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHH
Q 008633 439 KLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSK 517 (558)
Q Consensus 439 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ 517 (558)
+.+...|..-|....+.++-....+.+++- .-|.+..-.+...+....+++.|.+.|.+.++.+ || -.+|.-
T Consensus 784 p~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~ 856 (913)
T KOG0495|consen 784 PSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAWAW 856 (913)
T ss_pred CccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHHHH
Confidence 667778888887777777755554444432 4577888888889999999999999999999764 55 578888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhhh
Q 008633 518 LSNKLLASNKLESAYNLFRKIKIARQNDYARRLW 551 (558)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 551 (558)
+...+.+.|.-+.-.+++.+.. ...|.-+..|
T Consensus 857 fykfel~hG~eed~kev~~~c~--~~EP~hG~~W 888 (913)
T KOG0495|consen 857 FYKFELRHGTEEDQKEVLKKCE--TAEPTHGELW 888 (913)
T ss_pred HHHHHHHhCCHHHHHHHHHHHh--ccCCCCCcHH
Confidence 8899999999999999999887 3455556666
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.5e-12 Score=122.38 Aligned_cols=282 Identities=13% Similarity=0.070 Sum_probs=177.2
Q ss_pred CHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 248 HVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEG--FSPDSLTFSFLIEGLGRAGRIDDAIEVF 325 (558)
Q Consensus 248 ~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 325 (558)
+..+|...|+.+...+.-.......+..+|...+++++|.++|+...+.. ..-+..+|.+.+--+-+.-. --.+-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~---Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA---LSYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHH---HHHHH
Confidence 34667777777655555455555667777777777777777777776642 11245566666544332111 11112
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008633 326 DTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVP 405 (558)
Q Consensus 326 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 405 (558)
+.+.+.. +-.+.+|.++.++|.-+++.+.|++.|++..+.+ +-...+|+.+..-+.....+|.|...|+..+.. .|
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~ 486 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP 486 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence 2222222 2255677777777777777777777777777653 225667777777777777777777777766542 22
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008633 406 S-TGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVI 484 (558)
Q Consensus 406 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 484 (558)
. -..|-.+...|.++++++.|+-.|+++.+.+ +-+.+....+...+.+.|+.++|++++++....+ +-|+..--..+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence 2 2233445556777777777777777777655 3445555666666777777777777777777654 23444444455
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 485 AGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
..+...+++++|+..++++.+. .|+ ..++..++..|.+.|+.+.|..-|.-+.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 5666777777777777777754 444 56677777777777777777777766654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-09 Score=101.86 Aligned_cols=312 Identities=14% Similarity=0.098 Sum_probs=237.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCC---CChhhHHHHHHHHHhc
Q 008633 204 VMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVL---FNVMTYNIVISGWSKL 280 (558)
Q Consensus 204 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~---~~~~~~~~li~~~~~~ 280 (558)
+..++-.....+++.+-.+.....|++.+...-+....+.-...+++.|+.+|+++....| .|..+|..++..--..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 4456667778899999999999999887777777777778888999999999999987633 2677888777654332
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 281 GQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYY 360 (558)
Q Consensus 281 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 360 (558)
.+ +.++.+-.-.--+--..|..++.+-|.-.++.++|...|+...+.+.. ....|+.+.+-|....+...|.+-+
T Consensus 313 sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 313 SK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHH
Confidence 22 222222221111223457778888999999999999999999998655 6678999999999999999999999
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 008633 361 KGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKL 440 (558)
Q Consensus 361 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 440 (558)
+...+-+ +.|-..|-.|.++|.-.+...-|+-.|++...-. +-|...+.+|.++|.+.++.++|++.|.+....| ..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 9999875 7788999999999999999999999999988853 4567899999999999999999999999999876 33
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHH
Q 008633 441 SLTAYKLLLRRLSGFGKCGMLLDLWHEMQE----SGYPSD--GEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLV 514 (558)
Q Consensus 441 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 514 (558)
+...|..|.+.|-+.++.++|...|..-.+ .|...+ .....-|..-+.+.+++++|..+.......
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-------- 536 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-------- 536 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--------
Confidence 668899999999999999999988876654 332222 112222445566777777776655544321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 515 YSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
....++|..+++++.+.
T Consensus 537 ----------~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 537 ----------ETECEEAKALLREIRKI 553 (559)
T ss_pred ----------CchHHHHHHHHHHHHHh
Confidence 23346677777766643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.5e-11 Score=117.43 Aligned_cols=284 Identities=14% Similarity=0.126 Sum_probs=175.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCC---CChhhHHHHHHHHHhcCCHHHHHHH
Q 008633 213 QVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVL---FNVMTYNIVISGWSKLGQVVEMERV 289 (558)
Q Consensus 213 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 289 (558)
+..+|+..|+.+... +.-+..+...+..+|...+++++|+++|+.+....| -+...|.+.+--+-+. -++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 456666666664433 222335566666777777777777777776654311 2555666665544221 11222
Q ss_pred H-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 008633 290 L-KEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNC 368 (558)
Q Consensus 290 ~-~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 368 (558)
+ +++.+. -+-...+|.++.++|.-.++.+.|++.|++.++.... ...+|+.+.+-+....++|+|...|+......
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 2 122221 1234567777777777777777777777777666332 56677777777777777777777777776321
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 008633 369 EPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLL 448 (558)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 448 (558)
+.+-..|--+...|.+.++++.|+-.|+...+-+ +-+.+....+...+.+.|+.++|+++++++...+.+ |+..--..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 1122333445666777777777777777776643 233445555566666777778888888777765533 22222233
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 008633 449 LRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKG 507 (558)
Q Consensus 449 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 507 (558)
+..+...++.++|+..++++++. ++-+...|..+...|.+.|+.+.|+.-|--|.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 44566678888888888888875 24455577777788888888888888888777553
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-08 Score=93.45 Aligned_cols=372 Identities=14% Similarity=0.099 Sum_probs=246.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLE-TLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~-t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
.+...|-..+..=.+++++..|..+++..... -|-+. .|-.-+-.=-..|++..|.++|++-.+ ..|+...|++.
T Consensus 105 r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sf 180 (677)
T KOG1915|consen 105 RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSF 180 (677)
T ss_pred ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHH
Confidence 45556666667777777777777777777664 23322 222233333345777777777777665 46777777777
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHhcCC
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE-GF-SPDSLTFSFLIEGLGRAGR 317 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~p~~~t~~~ll~~~~~~g~ 317 (558)
|+.=.+.+.++.|..++++..- +.|++.+|--....=.+.|+...|..+|+...+. |- ..+...+.++..--.+...
T Consensus 181 I~fElRykeieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE 259 (677)
T KOG1915|consen 181 IKFELRYKEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKE 259 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777654 3367777777777777777777777777766543 10 0112223333332233334
Q ss_pred HHHHHHHHHHHHHC------------------------C-------------------CCCCHHHHHHHHHHHHhcCCHH
Q 008633 318 IDDAIEVFDTMKEK------------------------G-------------------CGPDTNAYNAVISNYISVGDFD 354 (558)
Q Consensus 318 ~~~a~~~~~~m~~~------------------------g-------------------~~p~~~~~~~li~~~~~~g~~~ 354 (558)
++.|.-+|.-.+.. | -+.|-.+|--.++.-...|+.+
T Consensus 260 ~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~ 339 (677)
T KOG1915|consen 260 YERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKD 339 (677)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHH
Confidence 44444444332221 0 1224456666667777778888
Q ss_pred HHHHHHHHhhhCCCCCCH-------HHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hc
Q 008633 355 ECMKYYKGMSSYNCEPNM-------DTYTRLISGL---LKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLC----SY 420 (558)
Q Consensus 355 ~A~~~~~~m~~~~~~p~~-------~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~ 420 (558)
...++|++.+.. ++|-. ..|..+--++ ....+++.+.++++..++. ++....||.-+--.|+ ++
T Consensus 340 ~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq 417 (677)
T KOG1915|consen 340 RIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQ 417 (677)
T ss_pred HHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHH
Confidence 888888888754 34422 1222222222 2467888888888888873 4444556654433333 46
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 008633 421 GPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVM 500 (558)
Q Consensus 421 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 500 (558)
.++..|.+++..++ |..|...++...|..-.+.++++.+..+++...+.+ +-|..+|......=...|+.+.|..+|
T Consensus 418 ~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 418 LNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred cccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 77888888887665 556888889999998899999999999999999876 557888888888888899999999999
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 008633 501 EESLRKG-FCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIAR 542 (558)
Q Consensus 501 ~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 542 (558)
+-++... +.-....|.+.++-=...|.++.|..+++++.+..
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 9988762 22225677777777788999999999999987643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-09 Score=100.02 Aligned_cols=219 Identities=15% Similarity=0.151 Sum_probs=169.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 314 RAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALE 393 (558)
Q Consensus 314 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 393 (558)
-.|+.-.|.+-|+..++....++ ..|--+..+|....+.++..+.|++..+.+ +-|..+|..-.+.+.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 45788889999999988865533 337778888999999999999999998875 5567778888888888899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC-
Q 008633 394 VFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESG- 472 (558)
Q Consensus 394 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~- 472 (558)
=|++.+... +-+...|..+.-+..+.+.+++++..|++.++. ++..+..|+.....+...++++.|.+.|+..++..
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 999988753 223445555555566788999999999998874 46678899999999999999999999999887642
Q ss_pred ----CCCCHHHH--HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 473 ----YPSDGEIY--EYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 473 ----~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
+..+...+ -.++. +.-.+++..|.+++.++++.+ |. ...|..|...-.+.|+.++|+++|++-.
T Consensus 494 ~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11122211 12222 223489999999999999764 44 5789999999999999999999998754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-08 Score=94.15 Aligned_cols=388 Identities=11% Similarity=0.085 Sum_probs=282.7
Q ss_pred CCCchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHH
Q 008633 139 GNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAI 218 (558)
Q Consensus 139 ~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~ 218 (558)
.++..-+...|.+|+. ..|+..+|++.|+.=.+-+.++.|..+++..+- +.|++.+|..-.+-=.+.|.+..|.
T Consensus 154 LgNi~gaRqiferW~~----w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME----WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred hcccHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHH
Confidence 3344457888999985 568999999999999999999999999999976 4699999999998888999999999
Q ss_pred HHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHH-----
Q 008633 219 QMLGRLEDF-GLK-FDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFN--VMTYNIVISGWSKLGQVVEMERV----- 289 (558)
Q Consensus 219 ~~~~~~~~~-g~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~----- 289 (558)
.+|+.+.+. |-. .+...+++....=.++..++.|.-+|.-.....|.+ ...|......=-+.|+.....+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 999998753 211 112234444444445678889999998877766655 45566666555556665544432
Q ss_pred ---HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHH--------HHHHHHhcCCHHHHH
Q 008633 290 ---LKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTN-AYNA--------VISNYISVGDFDECM 357 (558)
Q Consensus 290 ---~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~--------li~~~~~~g~~~~A~ 357 (558)
++.+++.+ +-|-.+|--.++.....|+.+...++|+..+..-.+.... .|.- .+-.=....+.+.+.
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44455443 4577788888888888899999999999998773332211 1211 111223577899999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008633 358 KYYKGMSSYNCEPNMDTYTRLISG----LLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKA 433 (558)
Q Consensus 358 ~~~~~m~~~~~~p~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 433 (558)
++|+...+. ++-...|+.-+=-. ..+..++..|.+++...+ |..|...+|...|..-.+.++++.+..+|++.
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999998873 34445555544333 346788999999988765 45789999999999889999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 008633 434 RKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESG-YPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSR 512 (558)
Q Consensus 434 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 512 (558)
.+.+ +-+..+|......-...|+.+.|..+|.-..+.. +.--...|-+.|+.=...|.++.|..+++++++. .+..
T Consensus 464 le~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~ 540 (677)
T KOG1915|consen 464 LEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHV 540 (677)
T ss_pred HhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccc
Confidence 9976 4567788888777788899999999999888643 2223447888888888899999999999999976 3444
Q ss_pred HHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHH
Q 008633 513 LVYSKLSNKLL-----ASN-----------KLESAYNLFRKIK 539 (558)
Q Consensus 513 ~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~ 539 (558)
.+|.....--. +.| ....|..+|++..
T Consensus 541 kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 541 KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 46655544332 334 5567777777653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.2e-11 Score=121.43 Aligned_cols=273 Identities=13% Similarity=0.140 Sum_probs=197.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCC
Q 008633 184 NVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKV 263 (558)
Q Consensus 184 ~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 263 (558)
+++-.|...|+.|+..||..+|..||..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 56777888899999999999999999999999888 8888887777778888888888888888877665
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHH
Q 008633 264 LFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMK-EKGCGPDTNAYNA 342 (558)
Q Consensus 264 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~ 342 (558)
.|...+|..|..+|...|++.. |+...+ -...+...+...|.-.....++..+. ..+.-||.. .
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---N 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---H
Confidence 4678899999999999998776 333222 12234445556666555555555432 234445543 3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 343 VISNYISVGDFDECMKYYKGMSSYNC-EPNMDTYTRLISGLLKS-RKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSY 420 (558)
Q Consensus 343 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 420 (558)
.+....-.|-++.+++++..+.-... .|..+ .++-.... ..+++-..+.+...+ .|+..+|.+++++-...
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAA 217 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhc
Confidence 45555667888888888877754321 12222 23333322 334433333333332 58999999999998999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008633 421 GPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQ 492 (558)
Q Consensus 421 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 492 (558)
|+.+.|..++.+|.+.|++.+..-|-.|+-+ .+....++.+++.|.+.|+.|+..|+...+..+..+|.
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9999999999999999999988877777654 88888899999999999999999999988888888665
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-11 Score=120.27 Aligned_cols=338 Identities=12% Similarity=0.079 Sum_probs=234.4
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 008633 154 IKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDA 233 (558)
Q Consensus 154 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 233 (558)
++..|+.|+-+||..+|.-||..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+. .|..
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 446789999999999999999999999998 9999988888888999999999999999888776 6788
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Q 008633 234 ESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA-EGFSPDSLTFSFLIEGL 312 (558)
Q Consensus 234 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~ 312 (558)
.+|..|..+|...||+.. |+.... -.-.++..+...|.-..-..++..+.- .+.-||..+ .+.-.
T Consensus 84 Dtyt~Ll~ayr~hGDli~----fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illl 149 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL----FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLL 149 (1088)
T ss_pred hHHHHHHHHHHhccchHH----HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHH
Confidence 899999999999999876 332222 122345566667776666666665432 244566554 34444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 313 GRAGRIDDAIEVFDTMKEKGCG-PDTNAYNAVISNYISVG-DFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVAD 390 (558)
Q Consensus 313 ~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 390 (558)
...|-++.+.+++..+...... |... +++-+.... .+++-..+.....+ .|+..+|..++.+-..+|+.+.
T Consensus 150 v~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~ 222 (1088)
T KOG4318|consen 150 VLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDG 222 (1088)
T ss_pred HHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhh
Confidence 5667778888877666433211 1111 233333322 34444444444443 5999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 008633 391 ALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQE 470 (558)
Q Consensus 391 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 470 (558)
|..++.+|.+.|++.+...|..++-+ .++...+..+++-|.+.|+.|+..|+...+..+...|....+ +
T Consensus 223 Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~ 291 (1088)
T KOG4318|consen 223 AKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------E 291 (1088)
T ss_pred HHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------c
Confidence 99999999999999999888888754 788888999999999999999999999887777775552221 2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH------------HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 471 SGYPSDGEIYEYVIAGLCNIGQLENAVLVMEE------------SLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKI 538 (558)
Q Consensus 471 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~------------m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 538 (558)
.| .+....+.+-+..-.-.| ..|.+.++. ..-.|+.....+|... .-....|+-++..++...|
T Consensus 292 e~-sq~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l 367 (1088)
T KOG4318|consen 292 EG-SQLAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQL 367 (1088)
T ss_pred cc-cchhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhh
Confidence 23 223333333222222223 333333332 2223655555444433 3345579999999988887
Q ss_pred H
Q 008633 539 K 539 (558)
Q Consensus 539 ~ 539 (558)
.
T Consensus 368 ~ 368 (1088)
T KOG4318|consen 368 L 368 (1088)
T ss_pred c
Confidence 5
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.2e-10 Score=101.80 Aligned_cols=200 Identities=12% Similarity=0.039 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008633 337 TNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEP 416 (558)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 416 (558)
...+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3455556666666666666666666665442 3334555666666666666666666666665543 2233445555556
Q ss_pred HHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 008633 417 LCSYGPPHAAMMMYKKARKVGC-KLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLEN 495 (558)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 495 (558)
+...|++++|.+.++++.+... ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 6666677777766666655321 2234455666777788888888888888877653 3345677788888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 496 AVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 496 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
|...++++.+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888888776 234566677777888888888888888877764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-09 Score=112.44 Aligned_cols=147 Identities=10% Similarity=-0.080 Sum_probs=63.9
Q ss_pred HhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 249 VGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTM 328 (558)
Q Consensus 249 ~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 328 (558)
+++|...+++.....|.+..++..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++.
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444444444444444444444444444444555555555555544432 112333444444444455555555555554
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 329 KEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEP-NMDTYTRLISGLLKSRKVADALEVFEEM 398 (558)
Q Consensus 329 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (558)
.+.... +...+..++..+...|++++|...++++.+.. .| +...+..+..++...|++++|...+.++
T Consensus 399 l~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 399 LKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 444322 11112222223333445555555554444322 12 2223344444444455555555555444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-09 Score=100.36 Aligned_cols=94 Identities=15% Similarity=0.082 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC 242 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 242 (558)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3444444444555555555555555444332 1223344444444444444444444444444332 1122333333333
Q ss_pred HHhcCCHhHHHHHHHH
Q 008633 243 LCQRLHVGAASSLFNS 258 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~ 258 (558)
+...|++++|.+.+++
T Consensus 109 ~~~~g~~~~A~~~~~~ 124 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQ 124 (234)
T ss_pred HHHcccHHHHHHHHHH
Confidence 3344444444444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-12 Score=85.18 Aligned_cols=50 Identities=42% Similarity=0.734 Sum_probs=38.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008633 265 FNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGR 314 (558)
Q Consensus 265 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 314 (558)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57777777777777777777777777777777777777777777777764
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-09 Score=112.92 Aligned_cols=181 Identities=14% Similarity=0.014 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 318 IDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEE 397 (558)
Q Consensus 318 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (558)
+++|...+++..+.... +...+..+...+...|++++|...|++..+.+ +.+...|..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45555555555554333 44455555555555555555555555555443 23344455555555555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-
Q 008633 398 MLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSD- 476 (558)
Q Consensus 398 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~- 476 (558)
..+.+.. +...+..++..+...|++++|...++++.+...+-+...+..+..++...|+.++|...++++... .|+
T Consensus 398 Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~ 474 (553)
T PRK12370 398 CLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITG 474 (553)
T ss_pred HHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchh
Confidence 5554211 111112222234445555555555555544322223334444555555566666666665555433 222
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008633 477 GEIYEYVIAGLCNIGQLENAVLVMEESLR 505 (558)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (558)
....+.+...|+..| ++|...++++.+
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 223333334444444 355555555443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.2e-12 Score=84.47 Aligned_cols=50 Identities=24% Similarity=0.504 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIR 210 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~ 210 (558)
||+.+||++|++|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888887763
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.2e-08 Score=92.12 Aligned_cols=364 Identities=14% Similarity=0.100 Sum_probs=248.6
Q ss_pred hHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHhCCHHHHHH-
Q 008633 143 GEAMVLFFNWAIKHPNVAKD-VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD-LETLSIVMDSFIRAGQVYKAIQ- 219 (558)
Q Consensus 143 ~~~~~~ff~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~-~~t~~~li~~~~~~g~~~~A~~- 219 (558)
.+.|..++.|+..- .|| .+-|......|...|+|++..+...+..+. .|+ +..+..-.+++-..|++++|+.
T Consensus 131 Y~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~eal~D 205 (606)
T KOG0547|consen 131 YDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEALFD 205 (606)
T ss_pred HHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHHHHh
Confidence 47889999999864 467 777888888999999999998887777664 344 2345555566666677776652
Q ss_pred ---------------------HHHH---------HHhCC--CCCCHHHHHHHHHHHHhc---------------------
Q 008633 220 ---------------------MLGR---------LEDFG--LKFDAESLNVVLWCLCQR--------------------- 246 (558)
Q Consensus 220 ---------------------~~~~---------~~~~g--~~~~~~~~~~ll~~~~~~--------------------- 246 (558)
++.. +.+.+ +-|+....++....+...
T Consensus 206 ~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~ 285 (606)
T KOG0547|consen 206 VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALE 285 (606)
T ss_pred hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHH
Confidence 1111 11111 223433333333222110
Q ss_pred ----C---CHhHHHHHHHHhhcC--CCC--C---------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008633 247 ----L---HVGAASSLFNSMKGK--VLF--N---------VMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFS 306 (558)
Q Consensus 247 ----~---~~~~A~~~~~~m~~~--~~~--~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 306 (558)
+ .+..|...+.+-... ..+ + ..+.+.-...+.-.|+...|..-|+...+....++. .|.
T Consensus 286 ~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI 364 (606)
T KOG0547|consen 286 ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYI 364 (606)
T ss_pred HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHH
Confidence 0 122222222211100 001 1 112222222234468888999999998886533332 377
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 008633 307 FLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSR 386 (558)
Q Consensus 307 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 386 (558)
.+...|....+.++..+.|++....+.. +..+|..-..++.-.+++++|..=|++.+... +-++..|..+--+..+.+
T Consensus 365 ~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~ 442 (606)
T KOG0547|consen 365 KRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQH 442 (606)
T ss_pred HHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHH
Confidence 7888899999999999999999988765 67788888888888999999999999998764 456677878888888899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-------CCHHHHHHHHHHHHcCCChh
Q 008633 387 KVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCK-------LSLTAYKLLLRRLSGFGKCG 459 (558)
Q Consensus 387 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~ 459 (558)
++++++..|++.+++ .+.....|+.+...+...++++.|.+.|+..++.... +.+.+-..++..- -.+++.
T Consensus 443 k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~ 520 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDIN 520 (606)
T ss_pred HHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHH
Confidence 999999999999886 4556788999999999999999999999988874322 1122222333222 338899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008633 460 MLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKL 522 (558)
Q Consensus 460 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 522 (558)
.|..++.+..+.+ +-....|..|...-.+.|+.++|+++|++.... ..|-.-++.+|
T Consensus 521 ~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l-----Art~~E~~~a~ 577 (606)
T KOG0547|consen 521 QAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL-----ARTESEMVHAY 577 (606)
T ss_pred HHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----HHhHHHHHHHH
Confidence 9999999999864 223458999999999999999999999998754 34444455554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-07 Score=92.78 Aligned_cols=369 Identities=15% Similarity=0.119 Sum_probs=184.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
.+.++|..+.-.+...+++++|+..|......+ +-|...+.-+.-.-++.|+++.....-..+.+.. +.....|..+.
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~A 150 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFA 150 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHH
Confidence 344555555555555555555555555555443 2344444444444445555555544444444321 11233444444
Q ss_pred HHHHhcCCHhHHHHHHHHhhcCC--CCChhhHHHHHHHH------HhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHH
Q 008633 241 WCLCQRLHVGAASSLFNSMKGKV--LFNVMTYNIVISGW------SKLGQVVEMERVLKEIVAEGFSPDSLTF-SFLIEG 311 (558)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~--~~~~~~~~~li~~~------~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~ 311 (558)
.++.-.|+...|..+.+...... .|+...|.-....+ .+.|..++|.+.+..-... ..|...+ .+-...
T Consensus 151 vs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l 228 (700)
T KOG1156|consen 151 VAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADL 228 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHH
Confidence 44445555555555555544321 23444443333222 1233444444433322211 1122221 222333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH-HHHHHhhhCCCCCCHHHHHHH-HHHHHhcCCH
Q 008633 312 LGRAGRIDDAIEVFDTMKEKGCGPDTN-AYNAVISNYISVGDFDECM-KYYKGMSSYNCEPNMDTYTRL-ISGLLKSRKV 388 (558)
Q Consensus 312 ~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~ 388 (558)
+.+.+++++|..++..+.... ||.. .|..+..++.+..+.-+++ .+|....+. .|....-..+ +....-..-.
T Consensus 229 ~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~ 304 (700)
T KOG1156|consen 229 LMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELK 304 (700)
T ss_pred HHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhH
Confidence 445555555555555555542 2222 2222333333222222332 333333321 1111110000 1111111122
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----cC----------CCCCHH--HHHHHHHHH
Q 008633 389 ADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARK----VG----------CKLSLT--AYKLLLRRL 452 (558)
Q Consensus 389 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~----------~~~~~~--~~~~li~~~ 452 (558)
+..-.++..+.+.|+++--..+.++ |-.....+-..++.-.+.. .| -+|... ++-.++..+
T Consensus 305 ~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~ 381 (700)
T KOG1156|consen 305 EIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHY 381 (700)
T ss_pred HHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHH
Confidence 2333445555666655433332222 2111111111111111111 11 134443 455678889
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 453 SGFGKCGMLLDLWHEMQESGYPSDG-EIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESA 531 (558)
Q Consensus 453 ~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 531 (558)
-+.|+++.|..+++...++ .|+. ..|..-.+.+.+.|.+++|..++++..+.+ .+|..+-..-+.-..++++.++|
T Consensus 382 D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA 458 (700)
T KOG1156|consen 382 DKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEA 458 (700)
T ss_pred HHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHH
Confidence 9999999999999999987 5654 356666788999999999999999999876 57877776788888999999999
Q ss_pred HHHHHHHHHhcC
Q 008633 532 YNLFRKIKIARQ 543 (558)
Q Consensus 532 ~~~~~~m~~~~~ 543 (558)
.++..+..+.|.
T Consensus 459 ~~~~skFTr~~~ 470 (700)
T KOG1156|consen 459 EEVLSKFTREGF 470 (700)
T ss_pred HHHHHHhhhccc
Confidence 999999988775
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.4e-09 Score=103.88 Aligned_cols=237 Identities=22% Similarity=0.215 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhh-----CC-CC
Q 008633 303 LTFSFLIEGLGRAGRIDDAIEVFDTMKEK-----GC-GPDTN-AYNAVISNYISVGDFDECMKYYKGMSS-----YN-CE 369 (558)
Q Consensus 303 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-~~ 369 (558)
.+...+...|...|++++|..+++...+. |. .|.+. ..+.+...|...+++++|..+|+++.. .| ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445666666667777766666665443 21 12222 233466677788888888888877753 12 11
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---C--CC-CCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHc---CC
Q 008633 370 P-NMDTYTRLISGLLKSRKVADALEVFEEMLD---R--GI-VPST-GTITSFLEPLCSYGPPHAAMMMYKKARKV---GC 438 (558)
Q Consensus 370 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~--~~-~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~ 438 (558)
| -..+++.|..+|++.|++++|...+++..+ . |. .|.. ..++.+...|+..+++++|..+++...+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2 234566677778888888887777766532 1 21 1222 23556666778888888888888866542 11
Q ss_pred CC----CHHHHHHHHHHHHcCCChhHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh--
Q 008633 439 KL----SLTAYKLLLRRLSGFGKCGMLLDLWHEMQES----GY--PS-DGEIYEYVIAGLCNIGQLENAVLVMEESLR-- 505 (558)
Q Consensus 439 ~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 505 (558)
.+ -..+++.|...|.+.|++++|.++++++... +- .+ ....++.|...|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 11 2467888999999999999999999887631 11 11 244678888899999999999988888653
Q ss_pred --CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 506 --KGF-CPS-RLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 506 --~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
.|. .|+ ..+|..|...|.+.|+++.|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 221 233 5789999999999999999999988876
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-07 Score=95.80 Aligned_cols=292 Identities=13% Similarity=0.110 Sum_probs=201.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--
Q 008633 169 IVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQR-- 246 (558)
Q Consensus 169 li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~-- 246 (558)
...++...|++++|++.+++-... +......+......+.+.|+.++|..++..+.+.+. .+..-|..+..+..-.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcc
Confidence 345678899999999999876554 333455667778899999999999999999999863 3555566666665332
Q ss_pred ---CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 247 ---LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVV-EMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAI 322 (558)
Q Consensus 247 ---~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 322 (558)
.+.+...++|+++....| ...+...+.-.+.....+. .+..++..+...|+++ +|+.+-..|....+..-..
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp-~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYP-RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccccHHHHHHHHHHHHHhCc-cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 357778888998876653 2222222222222222333 3456677777788653 4444555555455555555
Q ss_pred HHHHHHHHC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhc
Q 008633 323 EVFDTMKEK----G----------CGPDTN--AYNAVISNYISVGDFDECMKYYKGMSSYNCEPN-MDTYTRLISGLLKS 385 (558)
Q Consensus 323 ~~~~~m~~~----g----------~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~ 385 (558)
+++...... | -+|+.. ++..+...|...|++++|++++++.++. .|+ +..|..-.+.|-..
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence 555554432 1 133443 4466678889999999999999999987 455 67888889999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH------HH--HHHHHHHHcCCC
Q 008633 386 RKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLT------AY--KLLLRRLSGFGK 457 (558)
Q Consensus 386 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~li~~~~~~g~ 457 (558)
|++.+|.+.++...... .-|...=+-.+..+.+.|+.++|.+++....+.+..|... .| .....+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998864 2344555566777788999999999999887766433221 12 334677889999
Q ss_pred hhHHHHHHHHHH
Q 008633 458 CGMLLDLWHEMQ 469 (558)
Q Consensus 458 ~~~A~~~~~~m~ 469 (558)
+..|++.|..+.
T Consensus 321 ~~~ALk~~~~v~ 332 (517)
T PF12569_consen 321 YGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999987766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-09 Score=97.56 Aligned_cols=234 Identities=12% Similarity=0.082 Sum_probs=161.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008633 267 VMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISN 346 (558)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 346 (558)
-.--+.|..+|.+.|.+.+|.+.++.-.+. .|-+.||..|-++|.+..+.+.|+.++.+-.+. ++-|+.....+.+.
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHH
Confidence 333456777888888888888877777664 456667777778888888888888887776665 33355455556677
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 008633 347 YISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAA 426 (558)
Q Consensus 347 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 426 (558)
+...++.++|.++|+...+.. +.++.....+..+|.-.++.+.|+..++++.+.|+. +...|+.+.-+|...++++-+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence 777788888888888777654 456666666777777778888888888888877753 445555555556666777777
Q ss_pred HHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 427 MMMYKKARKVGCKLS--LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 427 ~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
+.-|.+....-..|+ ...|..+-......|++..|.+.|+-...++ ..+...++.|.-.-.+.|++++|..++..+.
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 777777665433333 3455556666666777777777777777654 3356677777777777777777777777766
Q ss_pred hC
Q 008633 505 RK 506 (558)
Q Consensus 505 ~~ 506 (558)
..
T Consensus 457 s~ 458 (478)
T KOG1129|consen 457 SV 458 (478)
T ss_pred hh
Confidence 43
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.9e-08 Score=99.05 Aligned_cols=127 Identities=17% Similarity=0.075 Sum_probs=70.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 411 TSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNI 490 (558)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 490 (558)
..+...|-..|++++|+.++++.++.. +-.+..|..-.+.|-+.|++.+|.+.++.....+ .-|...-+-.+..+.+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHC
Confidence 333444555666666666666666543 2224555556666666666666666666666554 22444555555566666
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHH------H--HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 491 GQLENAVLVMEESLRKGFCPSRL------V--YSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 491 g~~~~A~~~~~~m~~~g~~p~~~------~--~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
|++++|.+.+....+.+..|-.. . ......+|.+.|++..|++-|..+.
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666555544322211 1 1234556666666666666555543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-09 Score=98.01 Aligned_cols=226 Identities=15% Similarity=0.101 Sum_probs=103.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 169 IVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLH 248 (558)
Q Consensus 169 li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~ 248 (558)
|.+.|.+.|.+.+|...|+.-.+. .|-+.||..+-+.|.+..+...|+.++.+-.+. ++-|+.......+.+-..++
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 444444555555555555444443 234445555555555555555555555444432 12222223333344444455
Q ss_pred HhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 249 VGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTM 328 (558)
Q Consensus 249 ~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 328 (558)
.++|.++++......+.|+.+...+..+|.-.++.+-|+++|+++.+.|+. +...|+.+.-+|.-.++++-++.-|+..
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 555555555444444444444444444455555555555555555555433 4444444444444445555555444444
Q ss_pred HHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 329 KEKGCGPD--TNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 329 ~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
...-..|+ ..+|-.+.......||+.-|.+.|+-....+ .-+...++.|.-.-.+.|++++|..++....
T Consensus 385 lstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 385 LSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 43322222 2234444444444455555555554444332 2233444444444444555555555544443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.8e-08 Score=93.19 Aligned_cols=272 Identities=10% Similarity=0.026 Sum_probs=179.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVIS 345 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 345 (558)
+........+-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++.+.-+. .+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHH
Confidence 44555555666667778888888888777652 344555555566777777777777776777666333 5667777777
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChh
Q 008633 346 NYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVP-STGTITSFLEPLCSYGPPH 424 (558)
Q Consensus 346 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~ 424 (558)
.|...|+..+|.+.|.+....+ +.=...|-.....|.-.|..++|+..+...-+.=..- -+..|..+ -|.+.+..+
T Consensus 321 YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgm--ey~~t~n~k 397 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGM--EYMRTNNLK 397 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHH--HHHHhccHH
Confidence 7777788888888888766432 2224567777777777888888887777665531101 11222222 366677788
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHhcCCHhHHHH
Q 008633 425 AAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQES--GYP----SDGEIYEYVIAGLCNIGQLENAVL 498 (558)
Q Consensus 425 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~----p~~~~~~~li~~~~~~g~~~~A~~ 498 (558)
.|.+.|..+.... +.|+..++-+.-.....+.+.+|..+|+..... .+. --..+++.|.++|.+.+++++|+.
T Consensus 398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 8888887776542 445666666666666677788888777766521 001 122357777778888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCch
Q 008633 499 VMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDY 546 (558)
Q Consensus 499 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 546 (558)
.+++.+... +-+..++.++.-.|...|+++.|.+.|.+.. .+.|+
T Consensus 477 ~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~ 521 (611)
T KOG1173|consen 477 YYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPD 521 (611)
T ss_pred HHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCc
Confidence 888877653 4567788888888888888888888887765 44444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.8e-08 Score=92.83 Aligned_cols=282 Identities=14% Similarity=0.082 Sum_probs=120.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008633 232 DAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEG 311 (558)
Q Consensus 232 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 311 (558)
+......-.+-+...+++.+..++++.+-+..|++...+..-|.++...|+..+-..+=.+|++.- +-...+|-++.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHH
Confidence 333333344444444444444444444444444444444444444444444444444444444331 1223444444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 312 LGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADA 391 (558)
Q Consensus 312 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 391 (558)
|...|+..+|.+.|.+....... =...|-...+.|+-.|.-|+|...+....+.= +-..-.+--+.--|.+.++.+-|
T Consensus 322 Yl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHH
Confidence 44444444444444444332211 12234444444444444444444444333210 00011111122233344444444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 008633 392 LEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKV----G--CKLSLTAYKLLLRRLSGFGKCGMLLDLW 465 (558)
Q Consensus 392 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 465 (558)
.+.|.+..... +.|+..++-+.-.....+.+.+|..+|+..... + ...-..+++.|..+|.+.+++++|+..+
T Consensus 400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 44444443321 122233333332233344444444444433310 0 0012334555555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008633 466 HEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSN 520 (558)
Q Consensus 466 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 520 (558)
+...... +.|..++..+.-.|...|+++.|+..|.+.+ .+.|+..+-..++.
T Consensus 479 q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 479 QKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred HHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence 5555432 3355555555555555566666666665555 33455444443333
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-07 Score=86.68 Aligned_cols=309 Identities=13% Similarity=0.062 Sum_probs=217.0
Q ss_pred CCCCHHHHHHHHHHHH--HhCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhH
Q 008633 194 VNPDLETLSIVMDSFI--RAGQVYKAIQMLGRLEDF-GLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTY 270 (558)
Q Consensus 194 ~~~~~~t~~~li~~~~--~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~ 270 (558)
+.|+..+...-+.+++ ..++...|.+.+-.+... -++-++.....+..++...|+.++|...|++...-.|-++...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 4444444444444443 345555555555444432 3556778888999999999999999999998876655555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 271 NIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV 350 (558)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 350 (558)
......+.+.|+.+....+...+.... .-+..-|..-.......++++.|+.+-++.++.... +...|-.-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhc
Confidence 555666778899998888888876542 112223333334445667888999988888776443 555666666788889
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCChhHHHH
Q 008633 351 GDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFL-EPLC-SYGPPHAAMM 428 (558)
Q Consensus 351 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~~-~~g~~~~a~~ 428 (558)
++.++|.--|+...... +-+..+|.-|+.+|...|++.+|..+-+...+. +..+..+.+.+. ..|. ....-++|.+
T Consensus 348 ~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred cchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 99999999999887653 457889999999999999999998877766553 233445554442 2222 2233477888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 008633 429 MYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGF 508 (558)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 508 (558)
+++...+.. +.-....+.+...+...|+.++++.+++..... .||....+.|.+.+...+.+.+|...|..+++.
T Consensus 426 f~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~-- 500 (564)
T KOG1174|consen 426 FAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ-- 500 (564)
T ss_pred HHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--
Confidence 887776643 222456677778888899999999999888764 678889999999999999999999999988865
Q ss_pred CCC
Q 008633 509 CPS 511 (558)
Q Consensus 509 ~p~ 511 (558)
.|+
T Consensus 501 dP~ 503 (564)
T KOG1174|consen 501 DPK 503 (564)
T ss_pred Ccc
Confidence 455
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-06 Score=83.33 Aligned_cols=202 Identities=11% Similarity=0.094 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------C
Q 008633 338 NAYNAVISNYISVGDFDECMKYYKGMSSYNCEPN---MDTYTRLISGLLKSRKVADALEVFEEMLDRG-----------I 403 (558)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~ 403 (558)
..|..+.+.|-..|+++.|..+|++..+...+-- ..+|..-...-.+..+++.|.++.+.....- .
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 3567778888888999999999988876542211 3455555566667778888888877664321 1
Q ss_pred CCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH
Q 008633 404 VPS------TGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDG 477 (558)
Q Consensus 404 ~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 477 (558)
++. ...|...++.--..|-++....+|+++.+..+.-.....| ....+-...-++++.++|++-+..--.|+.
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 111 1234444444445677777788888887754322211111 111234455577788887766553334554
Q ss_pred -HHHHHHHHHHHhc---CCHhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 478 -EIYEYVIAGLCNI---GQLENAVLVMEESLRKGFCPSRL--VYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 478 -~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
..|+..+.-+.+. -+.+.|..+|+++++ |.+|... .|......=.+.|....|+.++++....
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3777777666542 368999999999998 6665532 2322223334578888999999887644
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-08 Score=98.52 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHhcCCHhHHHHHHHHhhc-------C-
Q 008633 198 LETLSIVMDSFIRAGQVYKAIQMLGRLEDF-----GL-KFDAE-SLNVVLWCLCQRLHVGAASSLFNSMKG-------K- 262 (558)
Q Consensus 198 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~-----g~-~~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~-------~- 262 (558)
..+...+...|...|++++|+.+++...+. |. .|.+. ..+.+...|...+++++|..+|+++.. .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666777777888888888777776543 21 11221 122344455556666666655555421 1
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 263 VLFNVMTYNIVISGWSKLGQVVEMERVLKEIV 294 (558)
Q Consensus 263 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (558)
.+.-..+++.|...|.+.|++++|...+++..
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERAL 310 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 22223345555556666666666655555443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-06 Score=79.45 Aligned_cols=309 Identities=12% Similarity=0.049 Sum_probs=217.0
Q ss_pred CCCHHHHHHHHHHHHh--cCCHhHHHH--HHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 008633 230 KFDAESLNVVLWCLCQ--RLHVGAASS--LFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTF 305 (558)
Q Consensus 230 ~~~~~~~~~ll~~~~~--~~~~~~A~~--~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 305 (558)
++...+...-+.+++. .++...|.. ++-+.....+-|+.....+...+...|+.++|+..|++.... .|+..+-
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhhh
Confidence 3333344444444443 344334433 444445567889999999999999999999999999988764 2433221
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 008633 306 -SFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLK 384 (558)
Q Consensus 306 -~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 384 (558)
..-.-.+.+.|+.+....+...+....-. ....|-.-........+++.|+.+-++.++.+ +.++..|-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence 11122345778888888887777655211 33344444555667789999999999988764 4556666666678888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-cCCChhHHH
Q 008633 385 SRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLL-RRLS-GFGKCGMLL 462 (558)
Q Consensus 385 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~ 462 (558)
.|+.++|.-.|+..+... +-+...|..++.+|...|...+|..+-+...+. ...+..+...+. ..+. .-.--++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 999999999999987752 346689999999999999999998877665542 233444544442 2222 122347788
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 463 DLWHEMQESGYPSDG-EIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 463 ~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
++++.-.+. .|+. ...+.+...+...|+.++++.++++.+.. .||......|.+.+...+.+++|.+.|....
T Consensus 425 kf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL-- 498 (564)
T KOG1174|consen 425 KFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL-- 498 (564)
T ss_pred HHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHH--
Confidence 888877654 5553 35667777888999999999999999864 7999999999999999999999999998876
Q ss_pred cCCchhhhh
Q 008633 542 RQNDYARRL 550 (558)
Q Consensus 542 ~~~~~~~~~ 550 (558)
++.|+....
T Consensus 499 r~dP~~~~s 507 (564)
T KOG1174|consen 499 RQDPKSKRT 507 (564)
T ss_pred hcCccchHH
Confidence 455554433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.5e-07 Score=87.65 Aligned_cols=92 Identities=22% Similarity=0.215 Sum_probs=51.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCH--HHHHHHHHHHH
Q 008633 307 FLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNC-EPNM--DTYTRLISGLL 383 (558)
Q Consensus 307 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~~~~~li~~~~ 383 (558)
.+...+...|++++|.+.+++..+.... +...+..+..+|...|++++|..++++..+..- .++. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 4444555666666666666666655422 344555666666666666666666666554321 1221 23445556666
Q ss_pred hcCCHHHHHHHHHHHH
Q 008633 384 KSRKVADALEVFEEML 399 (558)
Q Consensus 384 ~~g~~~~A~~~~~~m~ 399 (558)
..|++++|..++++..
T Consensus 198 ~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 198 ERGDYEAALAIYDTHI 213 (355)
T ss_pred HCCCHHHHHHHHHHHh
Confidence 6666666666666654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.5e-06 Score=82.56 Aligned_cols=385 Identities=12% Similarity=0.049 Sum_probs=232.8
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 008633 145 AMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRL 224 (558)
Q Consensus 145 ~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~ 224 (558)
..+.+.+-+.+..+-.+ .|.....-.+...|+-++|.+.+....+..+. +.+.|+.+.-.+-...++++|++.|..+
T Consensus 25 kgLK~~~~iL~k~~eHg--eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nA 101 (700)
T KOG1156|consen 25 KGLKLIKQILKKFPEHG--ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNA 101 (700)
T ss_pred hHHHHHHHHHHhCCccc--hhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 44455555555333223 33333334455667888888777776665432 5567777777777777888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH
Q 008633 225 EDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEG-FSPDSL 303 (558)
Q Consensus 225 ~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~ 303 (558)
.+.+ +-|..++.-+.-.-++.++++.....-.+.-+..+.....|...+.++.-.|+...|..++++..+.. ..|+..
T Consensus 102 l~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~ 180 (700)
T KOG1156|consen 102 LKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKE 180 (700)
T ss_pred HhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHH
Confidence 8765 33667777666666677777776666665555555577788888888888888888888888887754 346666
Q ss_pred HHHHHHH------HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 008633 304 TFSFLIE------GLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTR 377 (558)
Q Consensus 304 t~~~ll~------~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 377 (558)
.|..... ...+.|..++|.+.+..-... +.-....-.+-...+.+.+++++|..++..+... .||..-|..
T Consensus 181 ~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~ 257 (700)
T KOG1156|consen 181 DYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYE 257 (700)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHH
Confidence 6544332 234567777777766654443 2212333345567788888888888888888876 466665555
Q ss_pred HHH-HHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 008633 378 LIS-GLLKSRKVADAL-EVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGF 455 (558)
Q Consensus 378 li~-~~~~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 455 (558)
... ++.+-.+.-++. .+|....+. .+-....-..-+.......-.+..-.++....+.|+++-- ..+...|-.-
T Consensus 258 ~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p 333 (700)
T KOG1156|consen 258 GLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDP 333 (700)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhch
Confidence 444 443344444444 555554443 1111111111111111122233344455566667765433 3333323222
Q ss_pred CChhHHHHHHHHHH----HCC----------CCCCHHHH--HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHH
Q 008633 456 GKCGMLLDLWHEMQ----ESG----------YPSDGEIY--EYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKL 518 (558)
Q Consensus 456 g~~~~A~~~~~~m~----~~~----------~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 518 (558)
.+.+-..++.-.+. ..| -+|....| ..++..+-+.|+++.|..+++.++.+ .|+ ...|..=
T Consensus 334 ~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~K 411 (700)
T KOG1156|consen 334 EKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVK 411 (700)
T ss_pred hHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHH
Confidence 22221112211111 111 14555444 45677788999999999999999955 788 5677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhc
Q 008633 519 SNKLLASNKLESAYNLFRKIKIAR 542 (558)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~m~~~~ 542 (558)
.+.+...|..++|..++++..+..
T Consensus 412 aRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 412 ARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcc
Confidence 788999999999999999988543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.7e-07 Score=87.97 Aligned_cols=217 Identities=15% Similarity=0.064 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 282 QVVEMERVLKEIVAEG-FSPD--SLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMK 358 (558)
Q Consensus 282 ~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 358 (558)
..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+.... +...|+.+...+...|++++|.+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 4445555555555321 1111 233555555566666666666666666655433 45566666666666666666666
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 008633 359 YYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGC 438 (558)
Q Consensus 359 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 438 (558)
.|++..+.. +-+..+|..+..++...|++++|.+.++...+.. |+..........+...++.++|...+.+.....
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 666666542 2234555556666666666666666666666542 322211111111233455666666665443321
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC---CC---CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 008633 439 KLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQES---GY---PSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKG 507 (558)
Q Consensus 439 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 507 (558)
.++...+ .+ .....|+..++ ..+..+.+. .. +.....|..+...+.+.|++++|+..|++.++.+
T Consensus 196 ~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1221111 11 12223444333 233333321 00 1123567888888888888888888888888764
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-06 Score=84.80 Aligned_cols=302 Identities=11% Similarity=-0.008 Sum_probs=182.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008633 235 SLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNV---MTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEG 311 (558)
Q Consensus 235 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 311 (558)
.|..+...+...|+.+.+.+.+.......+.+. .........+...|++++|.+.+++..+.. +.|...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 344444455555666665555554433222221 122233445667788888888888887753 223334332 222
Q ss_pred HHh----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 008633 312 LGR----AGRIDDAIEVFDTMKEKGCGPD-TNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSR 386 (558)
Q Consensus 312 ~~~----~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 386 (558)
+.. .+..+.+.+.++. .....|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 222 3445555555544 1222333 3455567788899999999999999999875 455678888999999999
Q ss_pred CHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHcCCChh
Q 008633 387 KVADALEVFEEMLDRGI-VPST--GTITSFLEPLCSYGPPHAAMMMYKKARKVGC-KLSLTAY-K--LLLRRLSGFGKCG 459 (558)
Q Consensus 387 ~~~~A~~~~~~m~~~~~-~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~ 459 (558)
++++|...+++...... .++. ..+..+...+...|++++|..+++++..... .+..... + .++..+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 99999999999877532 2232 2345677788899999999999999865332 1222211 1 3344445555444
Q ss_pred HHHHH--HHHH-HHCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC------C--CHHHHHHHHHHHHhcCC
Q 008633 460 MLLDL--WHEM-QESGY-PSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFC------P--SRLVYSKLSNKLLASNK 527 (558)
Q Consensus 460 ~A~~~--~~~m-~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------p--~~~~~~~l~~~~~~~g~ 527 (558)
.+.+. +... ..... ............++...|+.++|...++.+...... . ..........++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 33333 1111 11100 111122235667788899999999999998763211 1 12333334445678999
Q ss_pred HHHHHHHHHHHHHh
Q 008633 528 LESAYNLFRKIKIA 541 (558)
Q Consensus 528 ~~~A~~~~~~m~~~ 541 (558)
+++|.+.+......
T Consensus 323 ~~~A~~~L~~al~~ 336 (355)
T cd05804 323 YATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.8e-07 Score=86.24 Aligned_cols=218 Identities=14% Similarity=0.009 Sum_probs=130.8
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 008633 177 KFFDFMCNVLSDMAKEG-VNPD--LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAAS 253 (558)
Q Consensus 177 ~~~~~a~~l~~~m~~~g-~~~~--~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~ 253 (558)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+... .+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666666666432 1121 34566666777777888888888877776542 35677777777788888888888
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008633 254 SLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGC 333 (558)
Q Consensus 254 ~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 333 (558)
+.|++..+..|.+..+|..+...+...|++++|.+.|+...+.. |+..........+...++.++|...+++.....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 88877766556567777777777777888888888887777653 332212222222334567777777776654332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008633 334 GPDTNAYNAVISNYISVGDFDECMKYYKGMSSY---NC---EPNMDTYTRLISGLLKSRKVADALEVFEEMLDRG 402 (558)
Q Consensus 334 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 402 (558)
.++...+ .+ .....|+...+ +.+..+.+. .. +.....|..+...+.+.|++++|...|++..+.+
T Consensus 196 ~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222111 22 22234444333 233333321 10 1123467777777777788888888887777654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.7e-06 Score=83.00 Aligned_cols=375 Identities=13% Similarity=0.044 Sum_probs=244.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCH-HHHH
Q 008633 159 VAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDA-ESLN 237 (558)
Q Consensus 159 ~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~ 237 (558)
+.-|...|..+.-++.+.|+++.+.+.|++.... .....+.|..+...+...|.-..|+.+++........|+. ..+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3457888999999999999999999999988664 3346678888888999999999999999887654433433 3333
Q ss_pred HHHHHHHh-cCCHhHHHHHHHHhhc-----CCCCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcC-CC
Q 008633 238 VVLWCLCQ-RLHVGAASSLFNSMKG-----KVLFNVMTYNIVISGWSKL-----------GQVVEMERVLKEIVAEG-FS 299 (558)
Q Consensus 238 ~ll~~~~~-~~~~~~A~~~~~~m~~-----~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g-~~ 299 (558)
..-..|.+ .+.+++++.+-.+... ........|..+.-+|... ....++++.+++..+.+ -.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33333332 3566666655554432 1112334455555555421 23456777888877654 33
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHH
Q 008633 300 PDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPN-MDTYTRL 378 (558)
Q Consensus 300 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 378 (558)
|++.-|. .--|+..++++.|.+...+..+.+-..+...|..|.-.+...+++.+|+.+.+...+. .++ ......-
T Consensus 478 p~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~ 553 (799)
T KOG4162|consen 478 PLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGK 553 (799)
T ss_pred chHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhh
Confidence 4444443 3345667889999999999988866668889999999999999999999998876543 111 0000000
Q ss_pred HHHHHhcCCHHHHHHHHHHH---------------------------------------------------HHCC-----
Q 008633 379 ISGLLKSRKVADALEVFEEM---------------------------------------------------LDRG----- 402 (558)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~m---------------------------------------------------~~~~----- 402 (558)
|..-..-++.++|......+ ...|
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 01111112222221111111 0000
Q ss_pred ----CC--CC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 008633 403 ----IV--PS------TGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQE 470 (558)
Q Consensus 403 ----~~--p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 470 (558)
+. |+ ...+......+.+.+..++|...+.++.+.. +.....|......+...|+.++|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 00 11 1122233444555667777776666666543 45566777777778888999999999988886
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 471 SGYPSDGEIYEYVIAGLCNIGQLENAVL--VMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 471 ~~~~p~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
.+ +-++.+..++...+.+.|+..-|.. ++.++++.+ +.+...|..+...+.+.|+.++|.+.|.-..+.
T Consensus 713 ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 713 LD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 54 3355688889999999998887777 999999775 356899999999999999999999999877654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1e-05 Score=79.34 Aligned_cols=121 Identities=11% Similarity=-0.019 Sum_probs=60.8
Q ss_pred HHHHHHHhcCChhHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC--CCCCCHH---
Q 008633 412 SFLEPLCSYGPPHAAMMMYK--------KARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQES--GYPSDGE--- 478 (558)
Q Consensus 412 ~ll~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~--- 478 (558)
..+......|+++.|.+++. .+.+.+.. +.+...+...+.+.++-+.|..++.+.... .-.+...
T Consensus 381 ~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~ 458 (652)
T KOG2376|consen 381 LRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALL 458 (652)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHH
Confidence 34444455666666666666 33333322 334444555566665555555555544320 0011111
Q ss_pred -HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 479 -IYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFR 536 (558)
Q Consensus 479 -~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 536 (558)
++.-+...-.+.|+.++|..+++++++.. ++|..+...++.+|++. +.+.|..+-+
T Consensus 459 ~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 459 SLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred hHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 22223333345577777777777777643 45566666666666654 3445554443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.2e-06 Score=94.59 Aligned_cols=338 Identities=11% Similarity=0.030 Sum_probs=214.1
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCC-------CC--hhhHHHHHHHH
Q 008633 207 SFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVL-------FN--VMTYNIVISGW 277 (558)
Q Consensus 207 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-------~~--~~~~~~li~~~ 277 (558)
.....|+.+.+..++..+.......+..........+...|++++|...++....... +. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777777776653211112222334455566778999999998887643211 11 11223344556
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHH
Q 008633 278 SKLGQVVEMERVLKEIVAEGFSPDS----LTFSFLIEGLGRAGRIDDAIEVFDTMKEK----GCG-PDTNAYNAVISNYI 348 (558)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~~ 348 (558)
...|++++|...+++....-...+. ...+.+...+...|++++|...+++.... |.. ....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6899999999999988763111121 23455666677899999999999887643 211 11234566677888
Q ss_pred hcCCHHHHHHHHHHhhh----CCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH
Q 008633 349 SVGDFDECMKYYKGMSS----YNCE--P-NMDTYTRLISGLLKSRKVADALEVFEEMLDR--GIVPS--TGTITSFLEPL 417 (558)
Q Consensus 349 ~~g~~~~A~~~~~~m~~----~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~--~~~~~~ll~~~ 417 (558)
..|++++|...+++..+ .+.. + ....+..+...+...|++++|...+.+.... ...+. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999999887654 2211 1 2234455666677789999999999887543 11122 23344455566
Q ss_pred HhcCChhHHHHHHHHHHHcC--CCCCHH--H--HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 008633 418 CSYGPPHAAMMMYKKARKVG--CKLSLT--A--YKLLLRRLSGFGKCGMLLDLWHEMQESGYPSD---GEIYEYVIAGLC 488 (558)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~--~~~~~~--~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~ 488 (558)
...|+.+.|.+.+..+.... ...... . ....+..+...|+.+.|...+........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 77899999999988875421 111111 0 01122445567899999988877654221111 112345667788
Q ss_pred hcCCHhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 008633 489 NIGQLENAVLVMEESLRK----GFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIKIARQN 544 (558)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 544 (558)
..|+.++|...++++... |..++ ..+...+..++.+.|+.++|.+.+.+..+....
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 899999999999988753 33332 356777888899999999999999988765543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.7e-06 Score=77.90 Aligned_cols=391 Identities=11% Similarity=0.045 Sum_probs=222.7
Q ss_pred HHHHHHcCCCchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 008633 132 VGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRA 211 (558)
Q Consensus 132 v~~~l~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~ 211 (558)
+..++.+.+. ..|..|.++......-+- ..+--.+...+-+.|++++|...+.-+.... .++...+..+...+.-.
T Consensus 29 Ledfls~rDy--tGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 29 LEDFLSNRDY--TGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYL 104 (557)
T ss_pred HHHHHhcccc--hhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHH
Confidence 4455554444 445566655543221111 1222234445568899999999998887753 56677777777777778
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008633 212 GQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLK 291 (558)
Q Consensus 212 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 291 (558)
|.+.+|.++-....+ ++-.-..|+..-.+.++-++-..+-+.+... ..---+|.......-.+.+|++++.
T Consensus 105 g~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~----~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT----LEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh----HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 889998888765443 3333444555666677776666665555432 2223334444444557899999999
Q ss_pred HHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---------
Q 008633 292 EIVAEGFSPDSLTFSFL-IEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYK--------- 361 (558)
Q Consensus 292 ~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------- 361 (558)
.....+ |+-...|.- .-+|.+..-++-+.++++-..+.- +-+...-|.......+.=+-..|+.-..
T Consensus 176 rvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 176 RVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred HHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 998763 555555543 446678888888999988877762 2244444444333322211111111111
Q ss_pred -----HhhhCC------------CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008633 362 -----GMSSYN------------CEPN-----MDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCS 419 (558)
Q Consensus 362 -----~m~~~~------------~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 419 (558)
.+.+.+ +-|. ...--.|+--|.+.+++.+|..+.+++.- ..|.......++. +.
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~--aa 328 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF--AA 328 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH--HH
Confidence 111111 0111 11223345557788999999988776532 2344443333332 22
Q ss_pred cC-------ChhHHHHHHHHHHHcCCCC-----------------------------------CHHHHHHHHHHHHcCCC
Q 008633 420 YG-------PPHAAMMMYKKARKVGCKL-----------------------------------SLTAYKLLLRRLSGFGK 457 (558)
Q Consensus 420 ~g-------~~~~a~~~~~~~~~~~~~~-----------------------------------~~~~~~~li~~~~~~g~ 457 (558)
.| ...-|.+.|+..-+++..- |....-.+.++++..|+
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgn 408 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGN 408 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcC
Confidence 22 2233444444333322111 11111234567778888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 458 CGMLLDLWHEMQESGYPSDGEIY-EYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLF 535 (558)
Q Consensus 458 ~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 535 (558)
+.+|+++|-.+....++ |..+| ..|.++|.+.++.+.|..++-++ +-+.+ ......+.+-|.+.+.+--|-+.|
T Consensus 409 y~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 409 YVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred hHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888887765555 44455 45567788888888887766443 22222 234445567788888888888888
Q ss_pred HHHHHhcCCch
Q 008633 536 RKIKIARQNDY 546 (558)
Q Consensus 536 ~~m~~~~~~~~ 546 (558)
+++......|.
T Consensus 485 d~lE~lDP~pE 495 (557)
T KOG3785|consen 485 DELEILDPTPE 495 (557)
T ss_pred hHHHccCCCcc
Confidence 88886555444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.2e-07 Score=77.13 Aligned_cols=124 Identities=13% Similarity=-0.015 Sum_probs=51.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 170 VKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHV 249 (558)
Q Consensus 170 i~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 249 (558)
.-.|.+.|++..|..-+++..+.. +-+..+|..+...|-+.|..+.|.+.|++..+... -+-.+.|.....+|..|++
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHhCCCh
Confidence 334444444444444444444432 11233444444444444444444444444444321 1333444444444444444
Q ss_pred hHHHHHHHHhhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 250 GAASSLFNSMKGK--VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 250 ~~A~~~~~~m~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
++|...|++.... .+.-..+|..+.-+..+.|+.+.|...|++..+
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 4444444443321 222233344444444444444444444444433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.1e-07 Score=76.51 Aligned_cols=193 Identities=17% Similarity=0.050 Sum_probs=86.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 308 LIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRK 387 (558)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 387 (558)
+.-+|...|+...|.+-+++.++.... +..+|..+...|.+.|+.+.|.+-|++..+.. +-+..+.|....-+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 344445555555555555555544322 33445555555555555555555555544432 2233444444444455555
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 008633 388 VADALEVFEEMLDRGIVP-STGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWH 466 (558)
Q Consensus 388 ~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 466 (558)
+++|...|++....-..+ -..+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.+...+.|++..|..+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 555555555544431111 11233333333334455555555554444432 1122333334444444455555555444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 467 EMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 467 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
.....+. ++..+....|..-...|+.+.|-++=.++.
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4444332 444444444444444555544444444433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-05 Score=77.88 Aligned_cols=371 Identities=11% Similarity=0.089 Sum_probs=204.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhC------CCCCCHHHHHHHH
Q 008633 167 NVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDF------GLKFDAESLNVVL 240 (558)
Q Consensus 167 ~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~------g~~~~~~~~~~ll 240 (558)
...+......+-++-++.++++..+. ++..-.--|..+++.+++++|.+.+..+... ..+.+-..|.-+.
T Consensus 142 ~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elc 217 (835)
T KOG2047|consen 142 DLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELC 217 (835)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHH
Confidence 33333334444455555555555442 3333455566666667777776666665432 1123444555555
Q ss_pred HHHHhcCCHh---HHHHHHHHhhcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008633 241 WCLCQRLHVG---AASSLFNSMKGKVLF-NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAG 316 (558)
Q Consensus 241 ~~~~~~~~~~---~A~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 316 (558)
+..++.-+.- ....+++.+..+.+. =...|+.|.+.|.+.|.+++|.++|++.... ..++.-|+.+.++|+.-.
T Consensus 218 dlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FE 295 (835)
T KOG2047|consen 218 DLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFE 295 (835)
T ss_pred HHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHH
Confidence 5555443322 233344444433221 1235778888888888888888888877664 335555666666665321
Q ss_pred C----------------------HHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 008633 317 R----------------------IDDAIEVFDTMKEKGC-----------GPDTNAYNAVISNYISVGDFDECMKYYKGM 363 (558)
Q Consensus 317 ~----------------------~~~a~~~~~~m~~~g~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 363 (558)
. ++-.+.-|+.+...+. +-++..|..-+ -+..|+..+-...|.+.
T Consensus 296 E~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteA 373 (835)
T KOG2047|consen 296 ESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEA 373 (835)
T ss_pred HHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHH
Confidence 1 1112222333333211 01122222211 12245566666667766
Q ss_pred hhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008633 364 SSYNCEPN------MDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPS---TGTITSFLEPLCSYGPPHAAMMMYKKAR 434 (558)
Q Consensus 364 ~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (558)
.+. +.|. ...|..+...|-..|+.+.|..+|++..+...+-- ..+|..-...-.+..+++.|+++.+++.
T Consensus 374 v~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 374 VKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred HHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 653 2332 23466777778888888888888888776543221 1222222223334566777777777665
Q ss_pred HcCCCC-----------------CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 008633 435 KVGCKL-----------------SLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAV 497 (558)
Q Consensus 435 ~~~~~~-----------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 497 (558)
...-.| +...|...++..-..|-++....+|+.+.+..+- ++.........+-.+.-++++.
T Consensus 453 ~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesF 531 (835)
T KOG2047|consen 453 HVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESF 531 (835)
T ss_pred cCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHH
Confidence 532221 2345666666666778888888888888876543 3333333333445566788888
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhcCCchhh
Q 008633 498 LVMEESLRKGFCPS-RLVYSKLSNKLLA---SNKLESAYNLFRKIKIARQNDYAR 548 (558)
Q Consensus 498 ~~~~~m~~~g~~p~-~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 548 (558)
+++++-+..=-.|+ ...|+..+..+.+ .-+.+.|+.+|++..+ +.+|...
T Consensus 532 k~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a 585 (835)
T KOG2047|consen 532 KAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA 585 (835)
T ss_pred HHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH
Confidence 88887665422344 3567666666643 4478999999999998 6666544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.3e-06 Score=82.36 Aligned_cols=355 Identities=15% Similarity=0.107 Sum_probs=236.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCC--CCChhhH
Q 008633 193 GVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKV--LFNVMTY 270 (558)
Q Consensus 193 g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~--~~~~~~~ 270 (558)
.+.-|...|..+.-+..+.|+++.+.+.|++....-+ -..+.|..+-..|...|.-..|..+++.-.... +++...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 3556788888888889999999999999999886533 367789999999999999999999988765432 4444444
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCC-
Q 008633 271 NIVISGWS-KLGQVVEMERVLKEIVAE--GF--SPDSLTFSFLIEGLGRA-----------GRIDDAIEVFDTMKEKGC- 333 (558)
Q Consensus 271 ~~li~~~~-~~g~~~~A~~~~~~m~~~--g~--~p~~~t~~~ll~~~~~~-----------g~~~~a~~~~~~m~~~g~- 333 (558)
-..-..|. +.+.+++++++-.+.... |. ......|..+.-+|... ....++.+.+++..+.+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444443 356777777776666652 11 12233444444444321 234567788888877654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC--------
Q 008633 334 GPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR-GIV-------- 404 (558)
Q Consensus 334 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~-------- 404 (558)
.|++..| +.--|+..++++.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+...+. |..
T Consensus 477 dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred CchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 4444444 44457788999999999999998866778899999999999999999999998876543 210
Q ss_pred ----------CCHHHHHHHHHHHHh-----------------------cCChhHHHHHHHHHH--------HcCC-----
Q 008633 405 ----------PSTGTITSFLEPLCS-----------------------YGPPHAAMMMYKKAR--------KVGC----- 438 (558)
Q Consensus 405 ----------p~~~~~~~ll~~~~~-----------------------~g~~~~a~~~~~~~~--------~~~~----- 438 (558)
-...|...++..+-. .++..+|......+. ..+.
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 001222222222220 011111111111110 0110
Q ss_pred ----C--CC------HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 439 ----K--LS------LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 439 ----~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
. |+ ...|......+.+.+..++|...+.+..... +-....|......+...|+.++|.+.|..+...
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 0 11 2234455667778888888888888777643 334556777777788899999999999998855
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHHhcCCchhhhhhcccC
Q 008633 507 GFCPS-RLVYSKLSNKLLASNKLESAYN--LFRKIKIARQNDYARRLWRSKG 555 (558)
Q Consensus 507 g~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~~~g 555 (558)
.|+ +....++..++.+.|+...|.. ++..+. ++.|.....|...|
T Consensus 714 --dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dal--r~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 714 --DPDHVPSMTALAELLLELGSPRLAEKRSLLSDAL--RLDPLNHEAWYYLG 761 (799)
T ss_pred --CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHH--hhCCCCHHHHHHHH
Confidence 566 6788999999999999888888 887777 56777777776544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.5e-07 Score=79.62 Aligned_cols=336 Identities=13% Similarity=0.154 Sum_probs=220.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHH
Q 008633 192 EGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYN 271 (558)
Q Consensus 192 ~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 271 (558)
.|+....--+..++..+.+..+++.|++++..-.+.. +.+......|..+|....++..|-..++++-...| ...-|.
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P-~~~qYr 81 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP-ELEQYR 81 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh-HHHHHH
Confidence 3444444457788888889999999999998877664 22777888899999999999999999999976544 333332
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008633 272 -IVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIE--GLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYI 348 (558)
Q Consensus 272 -~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 348 (558)
--...+.+.+.+..|+++...|... ++...-..-+. .....+++..+..++++....| +..+.+.......
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gClly 155 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLY 155 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheee
Confidence 3456777889999999999888653 33322222222 2345688888888888876433 4455555666677
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------------CHH-------
Q 008633 349 SVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVP-------------STG------- 408 (558)
Q Consensus 349 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-------------~~~------- 408 (558)
+.|+++.|.+-|+...+.+---....|+..+. ..+.|+++.|++...++++.|++- |..
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~ 234 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLV 234 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHH
Confidence 99999999999999988654445566776554 456789999999999999887632 211
Q ss_pred -HHHHHHH-------HHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH
Q 008633 409 -TITSFLE-------PLCSYGPPHAAMMMYKKARK-VGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEI 479 (558)
Q Consensus 409 -~~~~ll~-------~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 479 (558)
.-+.++. .+.+.|+.+.|.+.+..|-- .....|+.|...+.-. -..+++.+..+-+.-+.+.. +--..|
T Consensus 235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ET 312 (459)
T KOG4340|consen 235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPET 312 (459)
T ss_pred HHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHH
Confidence 1122222 23456777777777766632 2334466665544221 22355555555555555443 233568
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 008633 480 YEYVIAGLCNIGQLENAVLVMEESLRKGF-CPSRLVYSKLSNKLL-ASNKLESAYNLFRKIK 539 (558)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~ 539 (558)
|..++-.||+..-++.|..++.+-...-+ ..+...|+ |++++. ..-..++|.+-++.+.
T Consensus 313 FANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 88888889999888888888765322211 12233343 445544 4557788877776664
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8e-06 Score=79.23 Aligned_cols=219 Identities=14% Similarity=0.168 Sum_probs=118.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH-------H
Q 008633 306 SFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTR-------L 378 (558)
Q Consensus 306 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-------l 378 (558)
..+.++..+..+++.|.+-++...+.. -+..-++....+|...|.+.++....+...+.|. -...-|+. +
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHh
Confidence 344555555566666666666665554 2444555555666666666666655555554441 11111221 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 008633 379 ISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKC 458 (558)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 458 (558)
..+|.+.++++.|+..|.+.......|+... +....+++........-.+... ..--..-...+.+.|++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCH
Confidence 2344455566666666665444332322211 1111122222222221111111 01111113456677888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 459 GMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRK 537 (558)
Q Consensus 459 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (558)
..|+..|.+++... +-|...|....-+|.+.|.+..|+.-.+..++. .|+ ...|..=..++....++++|.+.|.+
T Consensus 375 ~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877765 556677777787888888888888877777765 344 45555555566666677777777777
Q ss_pred HHH
Q 008633 538 IKI 540 (558)
Q Consensus 538 m~~ 540 (558)
-.+
T Consensus 452 ale 454 (539)
T KOG0548|consen 452 ALE 454 (539)
T ss_pred HHh
Confidence 664
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-06 Score=76.69 Aligned_cols=327 Identities=13% Similarity=0.084 Sum_probs=221.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHH
Q 008633 166 YNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNV-VLWCLC 244 (558)
Q Consensus 166 ~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~-ll~~~~ 244 (558)
+.+.+..+.+..++..|++++..-.++. +-+......+..+|.+..++..|-..++++-.. -|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5667777788999999999999888774 237778888889999999999999999998875 344444432 245677
Q ss_pred hcCCHhHHHHHHHHhhcCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 245 QRLHVGAASSLFNSMKGKVLFNVMTYNIVISG--WSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAI 322 (558)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 322 (558)
+.+.+.+|+.+...|... ++...-..-+.+ ....+++..+..++++....| +..+.+...-...+.|+++.|.
T Consensus 90 ~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence 889999999999988753 222222222222 234678888888888776443 4445444444557899999999
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-------------CHH--------HHHHHHH
Q 008633 323 EVFDTMKEK-GCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEP-------------NMD--------TYTRLIS 380 (558)
Q Consensus 323 ~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-------------~~~--------~~~~li~ 380 (558)
+-|+...+- |.. ....|+..+. ..+.|+++.|++...+++++|++- |+. .-+.++.
T Consensus 165 qkFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 165 QKFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 999998776 555 4567876554 457789999999999999987532 211 1123333
Q ss_pred H-------HHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008633 381 G-------LLKSRKVADALEVFEEMLDR-GIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRL 452 (558)
Q Consensus 381 ~-------~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 452 (558)
+ +.+.|+++.|.+.+.+|--. ....|.+|...+.- --..+++....+-+.-+...+ +....|+..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al-~n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL-MNMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH-hcccCCccccHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 3 45678999999988888532 23456677655432 123456666666666666654 34568888899999
Q ss_pred HcCCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 453 SGFGKCGMLLDLWHEMQESGY-PSDGEIYEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 453 ~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
|+..-++-|.+++.+-...-. -.+...|+.+=......-..++|.+-++.+.
T Consensus 321 CKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred hhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999998876443211 1133334433222334456788877777654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.5e-05 Score=71.53 Aligned_cols=314 Identities=16% Similarity=0.123 Sum_probs=180.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHHhCCHHHHHHHHHHHHhCCCCCCHHH-HH
Q 008633 162 DVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIV---MDSFIRAGQVYKAIQMLGRLEDFGLKFDAES-LN 237 (558)
Q Consensus 162 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~l---i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~ 237 (558)
++.-.--+.+.+..+|++..|+.-|....+. |+..|.++ ...|...|+-..|+.=+.++.+. +||-.. -.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 4444555666666777777777777666543 34444444 34566677777777777776653 455322 11
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008633 238 VVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGR 317 (558)
Q Consensus 238 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 317 (558)
.-...+.+.|.++.|..-|+.+....+.+. ....++.+.-..++-.. ....+..+...|+
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~----~~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNG----LVLEAQSKLALIQEHWV----------------LVQQLKSASGSGD 170 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcc----hhHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCc
Confidence 223345666777777777766655433111 11111111111111111 1223334455677
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 318 IDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEE 397 (558)
Q Consensus 318 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (558)
...|++....+.+..+ -|+..|..-..+|...|++..|+.=++...+.. .-+..++--+-..+...|+.+.++...++
T Consensus 171 ~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 7777777777777633 377777777777888888777776666655433 34455555666667777777777777777
Q ss_pred HHHCCCCCCHHH----HHHH---H------HHHHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHcCCChhHH
Q 008633 398 MLDRGIVPSTGT----ITSF---L------EPLCSYGPPHAAMMMYKKARKVGCKLSLT---AYKLLLRRLSGFGKCGML 461 (558)
Q Consensus 398 m~~~~~~p~~~~----~~~l---l------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A 461 (558)
..+. .||... |..+ . ......+++.+++.-.+...+........ .+..+-.++...+++.+|
T Consensus 249 CLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 249 CLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred HHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 7664 355422 1111 1 11223455556666666655544332222 233444556667778888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 462 LDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 462 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
++...+..+.. +.|+.++---..+|.-...++.|+.-|+.+.+.
T Consensus 327 iqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 327 IQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 88888877653 334667777777777777888888888877765
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.4e-05 Score=76.89 Aligned_cols=333 Identities=16% Similarity=0.207 Sum_probs=152.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGV--NPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNV 238 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~--~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 238 (558)
.|...-..-+.++...+-..+.++++++..-... .-+...-+.+|-...+ -+.....+..+++..... |+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~------ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD------ 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh------
Confidence 3444555566666677777777777766653321 1111122222222222 233444444444443321 11
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 008633 239 VLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRI 318 (558)
Q Consensus 239 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 318 (558)
+.......+-+++|..+|+...- +..+.+.||.- .+..+.|.++-++.. ....|..+..+-.+.|..
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~----n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDM----NVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcc----cHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 12223334445555555554422 22333333322 133333333322221 223444555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 319 DDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEM 398 (558)
Q Consensus 319 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (558)
.+|.+-|-+. -|+..|.-+++...+.|.+++-.+++....+..-+|.+. +.||-+|++.++..+.++.+
T Consensus 1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi--- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI--- 1189 (1666)
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh---
Confidence 5554433221 144445555555555555555555555444443334333 34555555555554443332
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--------------------CCCCCHHHHHHHHHHHHcCCCh
Q 008633 399 LDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKV--------------------GCKLSLTAYKLLLRRLSGFGKC 458 (558)
Q Consensus 399 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--------------------~~~~~~~~~~~li~~~~~~g~~ 458 (558)
.-|+......+.+-|...|.++.|.-+|...... .-..+..+|..+-.+|...+.+
T Consensus 1190 ----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1190 ----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred ----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhh
Confidence 1244444444444444555554444444321110 0012334444444444443333
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 459 GMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFC-PSRLVYSKLSNKLLASNKLESAYNLFRK 537 (558)
Q Consensus 459 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (558)
.- .+|....+-....-..-++..|-..|-+++-+.+++..+ |+. .....|+.|.-.|.+- ++++..+.++-
T Consensus 1266 rl-----AQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsky-kp~km~EHl~L 1337 (1666)
T KOG0985|consen 1266 RL-----AQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSKY-KPEKMMEHLKL 1337 (1666)
T ss_pred hH-----HHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 21 223333333344556778888888888888888887765 432 2346677776666653 34444444443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3e-05 Score=86.91 Aligned_cols=334 Identities=12% Similarity=-0.017 Sum_probs=210.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC------CCC--HHHHHHHHHHHHh
Q 008633 174 GRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGL------KFD--AESLNVVLWCLCQ 245 (558)
Q Consensus 174 ~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~------~~~--~~~~~~ll~~~~~ 245 (558)
...|+++.+...++.+.......+..........+...|++++|..++......-- .+. ......+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34456665555555542111111222233344555678999999999987754211 111 1222233445667
Q ss_pred cCCHhHHHHHHHHhhcCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhc
Q 008633 246 RLHVGAASSLFNSMKGKVLF-N----VMTYNIVISGWSKLGQVVEMERVLKEIVAE----GF-SPDSLTFSFLIEGLGRA 315 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~ll~~~~~~ 315 (558)
.|+++.|...+++.....+. + ....+.+...+...|++++|...+++.... |- .....++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999999886542221 1 234566777788899999999999888753 11 11123455667778899
Q ss_pred CCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC--CHHHHHHHHHHHHh
Q 008633 316 GRIDDAIEVFDTMKEK----GCG--P-DTNAYNAVISNYISVGDFDECMKYYKGMSSYN--CEP--NMDTYTRLISGLLK 384 (558)
Q Consensus 316 g~~~~a~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p--~~~~~~~li~~~~~ 384 (558)
|++++|...+++.... |.. + ....+..+...+...|++++|...+++..... ..+ ....+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 9999999998876543 221 1 23345566677888899999999999875421 112 23345556667888
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCCH---HHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcC
Q 008633 385 SRKVADALEVFEEMLDRG--IVPST---GTI-TSFLEPLCSYGPPHAAMMMYKKARKVGCKLS---LTAYKLLLRRLSGF 455 (558)
Q Consensus 385 ~g~~~~A~~~~~~m~~~~--~~p~~---~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 455 (558)
.|++++|.+.+.+..... ..... ... ...+..+...|+.+.|..++........... ...+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 999999999998875421 11111 111 1122334557899999888766544221111 11234567778899
Q ss_pred CChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 008633 456 GKCGMLLDLWHEMQE----SGYPSD-GEIYEYVIAGLCNIGQLENAVLVMEESLRKG 507 (558)
Q Consensus 456 g~~~~A~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 507 (558)
|+.++|...+++... .|...+ ..+...+..++...|+.++|...+.++.+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999988764 232222 2356667778899999999999999998763
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.76 E-value=5e-07 Score=84.92 Aligned_cols=248 Identities=15% Similarity=0.119 Sum_probs=139.8
Q ss_pred HHhcCCHhHHHHHHHHhhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKV-LFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDA 321 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 321 (558)
+.-.|++..++.-.+ ..... ..+......+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344677777775555 22221 123444556677777788766543 3333332 55555554444444333444445
Q ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 322 IEVFDTMKEKGCG-PDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 322 ~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
..-+++....+.. .+.........++...|++++|++++... .+.......+..|++.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444443333322 22333333335566678888888777643 3566667777888888888888888888876
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC
Q 008633 401 RGIVPSTGTITSFLEPLCS----YGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSD 476 (558)
Q Consensus 401 ~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 476 (558)
.+ .| .+...+..++.. .+.+..|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+ +-|
T Consensus 160 ~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~ 234 (290)
T PF04733_consen 160 ID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PND 234 (290)
T ss_dssp CS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCH
T ss_pred cC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCC
Confidence 42 33 333344444443 23577777777776553 45667777777777777777777777777766544 335
Q ss_pred HHHHHHHHHHHHhcCCH-hHHHHHHHHHHhC
Q 008633 477 GEIYEYVIAGLCNIGQL-ENAVLVMEESLRK 506 (558)
Q Consensus 477 ~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 506 (558)
..+...+|.+....|+. +.+.+++.++...
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 55666667666677766 5566677666643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-05 Score=76.07 Aligned_cols=247 Identities=11% Similarity=0.078 Sum_probs=128.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD-SLTFSFLIEGLGRAG-RIDDAIEVFDTMKEKGCGPDTNAYNAVISN 346 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 346 (558)
++..+-..+...++.++|+.+..++++.. |+ ...|+..-.++...| ++++++..++++.+.... +..+|+.....
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 34444444555556666666666665532 32 233444334444444 355666666666555433 44445544444
Q ss_pred HHhcCCH--HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 008633 347 YISVGDF--DECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPH 424 (558)
Q Consensus 347 ~~~~g~~--~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 424 (558)
+.+.|+. ++++.+++++.+.. +.|..+|+....++...|+++++++.++++++.+. -+...|+.....+.+.+...
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccc
Confidence 4444432 45555555555443 34555555555555555666666666666655432 22233332222222111000
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHhHHHHHH
Q 008633 425 AAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNI----GQLENAVLVM 500 (558)
Q Consensus 425 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~ 500 (558)
+ .....++.+++..+++... +-|...|+.+...+... ++..+|.+++
T Consensus 194 ------------~----------------~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 194 ------------G----------------LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred ------------c----------------ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 0 0001234555555555543 34556677766666663 3445677777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC------------------CHHHHHHHHHHHHHhcCCchhhhhhc
Q 008633 501 EESLRKGFCPSRLVYSKLSNKLLASN------------------KLESAYNLFRKIKIARQNDYARRLWR 552 (558)
Q Consensus 501 ~~m~~~g~~p~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~~~~~~~~~~~~~~ 552 (558)
.+....+ ..+......|++.|+... ..++|.++++.+. ...|-...||.
T Consensus 245 ~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~--~~d~ir~~yw~ 311 (320)
T PLN02789 245 LEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE--VADPMRRNYWA 311 (320)
T ss_pred HHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH--hhCcHHHHHHH
Confidence 7766543 234566777777776532 3477999999883 67787788884
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.8e-07 Score=84.49 Aligned_cols=246 Identities=13% Similarity=0.109 Sum_probs=105.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 008633 174 GRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAAS 253 (558)
Q Consensus 174 ~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~ 253 (558)
--.|++..++.-.+ .....-..+......+.+++...|+.+.++ .++.+.. .|.......+...+...++-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34566666654444 222111122334455566666666655432 3332222 344444433333332223333444
Q ss_pred HHHHHhhcC-CC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 254 SLFNSMKGK-VL-FNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK 331 (558)
Q Consensus 254 ~~~~~m~~~-~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 331 (558)
.-++..... .. .+..........+...|++++|++++..- .+.......+..+.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 333332211 11 12222222233444556666666655432 23444445555666666666666666666544
Q ss_pred CCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008633 332 GCGPDTNAYNAVISNY----ISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPST 407 (558)
Q Consensus 332 g~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 407 (558)
+ .|.. ...+..++ .-.+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+ +-+.
T Consensus 161 ~--eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~ 235 (290)
T PF04733_consen 161 D--EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDP 235 (290)
T ss_dssp S--CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHH
T ss_pred C--CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCH
Confidence 2 2222 22222222 2223456666666665443 23455555555555666666666666655554432 1223
Q ss_pred HHHHHHHHHHHhcCCh-hHHHHHHHHHHH
Q 008633 408 GTITSFLEPLCSYGPP-HAAMMMYKKARK 435 (558)
Q Consensus 408 ~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 435 (558)
.+...++......|+. +.+.+++..+..
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 3333444444444444 334444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00027 Score=69.63 Aligned_cols=366 Identities=11% Similarity=0.076 Sum_probs=220.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGL-KFDAESLNVVLWCL 243 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~ll~~~ 243 (558)
..-+=++.+..++++++|.....++...+ +-|...+..-+-++.+.+++++|+.+.+. .+. ..+...+--=..+.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcchhhHHHHHHH
Confidence 44445677889999999999999998876 55677888888889999999999865543 221 11111111123344
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------------------
Q 008633 244 CQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSP----------------------- 300 (558)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------------------- 300 (558)
.+.+..++|+..++..... +..+...-...+.+.|++++|+++|+.+.+++..-
T Consensus 90 Yrlnk~Dealk~~~~~~~~---~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRL---DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred HHcccHHHHHHHHhccccc---chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 5678999999999844332 55566777788899999999999999997654221
Q ss_pred ----CHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHCCC-------CCCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 008633 301 ----DSLTFSFLIE---GLGRAGRIDDAIEVFDTMKEKGC-------GPDT-------NAYNAVISNYISVGDFDECMKY 359 (558)
Q Consensus 301 ----~~~t~~~ll~---~~~~~g~~~~a~~~~~~m~~~g~-------~p~~-------~~~~~li~~~~~~g~~~~A~~~ 359 (558)
...+|..+.+ .+...|++.+|+++++...+.+. .-+. .+-..|..++-..|+.++|..+
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 1123333332 24467888899988888733221 1011 1223345567788889999998
Q ss_pred HHHhhhCCCCCCHHHH----HHHHHHHHhcCCHH----------------HHHHHH------------------------
Q 008633 360 YKGMSSYNCEPNMDTY----TRLISGLLKSRKVA----------------DALEVF------------------------ 395 (558)
Q Consensus 360 ~~~m~~~~~~p~~~~~----~~li~~~~~~g~~~----------------~A~~~~------------------------ 395 (558)
+...++.+ .+|...- |.|+..-....-++ .+..-|
T Consensus 247 y~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q 325 (652)
T KOG2376|consen 247 YVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQ 325 (652)
T ss_pred HHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 88888776 4454322 22222110000000 000000
Q ss_pred -HHHHHC--CCCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHH----
Q 008633 396 -EEMLDR--GIVPSTGTITSFLEPLCSY--GPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWH---- 466 (558)
Q Consensus 396 -~~m~~~--~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~---- 466 (558)
++.... +..| ...+..++..+.+. .....+..++...-+....-+..+.-.++......|+++.|++++.
T Consensus 326 ~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 326 VRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 000000 1112 22333343333221 2345555555555554323335566677788889999999999998
Q ss_pred ----HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 467 ----EMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK--GFCPS----RLVYSKLSNKLLASNKLESAYNLFR 536 (558)
Q Consensus 467 ----~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~ 536 (558)
.+.+.+..| .+..++...+.+.++.+.|..++.+++.- .-.+. ..++..+...-.+.|+-++|..+++
T Consensus 405 ~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le 482 (652)
T KOG2376|consen 405 SWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE 482 (652)
T ss_pred hhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence 666655555 35556666778888877788887777642 11122 2334444444467899999999999
Q ss_pred HHHHh
Q 008633 537 KIKIA 541 (558)
Q Consensus 537 ~m~~~ 541 (558)
++.+.
T Consensus 483 el~k~ 487 (652)
T KOG2376|consen 483 ELVKF 487 (652)
T ss_pred HHHHh
Confidence 99863
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.1e-05 Score=67.95 Aligned_cols=364 Identities=12% Similarity=0.061 Sum_probs=195.5
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHH
Q 008633 130 DVVGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETL-SIVMDSF 208 (558)
Q Consensus 130 ~~v~~~l~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~-~~li~~~ 208 (558)
++-..++.++... ++...| .-+.. +-+.+-.++-.-...|...|+...|+.=+....+. +||...- ..-...+
T Consensus 43 ElGk~lla~~Q~s-DALt~y-HaAve--~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLS-DALTHY-HAAVE--GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHH-HHHHHH-HHHHc--CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 4555666666654 343333 22221 11223344444456788899999999888888875 6775432 2234567
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCC--HHHHH------------HHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHH
Q 008633 209 IRAGQVYKAIQMLGRLEDFGLKFD--AESLN------------VVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVI 274 (558)
Q Consensus 209 ~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~------------~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li 274 (558)
.+.|.++.|..=|+.+.+....-. ...+. ..+..+...|+...|++....+.+-.+.|+..|..-.
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Ra 196 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARA 196 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHH
Confidence 899999999999999997643211 11111 1122233344555555555555444444555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 275 SGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFD 354 (558)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 354 (558)
.+|...|++..|+.-++...+.. .-+..++-.+-..+...|+.+.++...++..+. .||-..+- -.| ..+.
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf---~~Y---Kklk 267 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCF---PFY---KKLK 267 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHH---HHH---HHHH
Confidence 55555555555544444433321 112333333444444445555444444444433 12211110 001 1111
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCChhHHHHHHH
Q 008633 355 ECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTIT---SFLEPLCSYGPPHAAMMMYK 431 (558)
Q Consensus 355 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~ 431 (558)
+..+.++.|. .....+++.++++-.+...+....-....|+ .+-.++...|++.+|++...
T Consensus 268 Kv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 268 KVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred HHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 2222222222 2344667777777777777664332233333 33344445688999999988
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 008633 432 KARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS 511 (558)
Q Consensus 432 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 511 (558)
++.+.. +.|+.++.--..+|.-...+++|+.-|+...+.+ +.|... +.| .+.|.++.++.-++
T Consensus 332 evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n-~sn~~~---------reG-le~Akrlkkqs~kR----- 394 (504)
T KOG0624|consen 332 EVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN-ESNTRA---------REG-LERAKRLKKQSGKR----- 394 (504)
T ss_pred HHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-cccHHH---------HHH-HHHHHHHHHHhccc-----
Confidence 888754 3458888888889999999999999999998764 222211 111 23444444332221
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 008633 512 RLVYSKLSNKLLASNKLESAYNLFRKIKIARQN 544 (558)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 544 (558)
.-|..|. --++-.-.+..+.+++|-+.-.+
T Consensus 395 -DYYKILG--VkRnAsKqEI~KAYRKlAqkWHP 424 (504)
T KOG0624|consen 395 -DYYKILG--VKRNASKQEITKAYRKLAQKWHP 424 (504)
T ss_pred -hHHHHhh--hcccccHHHHHHHHHHHHHhcCC
Confidence 2333332 33555667788888888765443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-08 Score=60.09 Aligned_cols=32 Identities=47% Similarity=0.910 Sum_probs=17.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 367 NCEPNMDTYTRLISGLLKSRKVADALEVFEEM 398 (558)
Q Consensus 367 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (558)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.2e-08 Score=58.77 Aligned_cols=32 Identities=38% Similarity=0.842 Sum_probs=18.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 008633 332 GCGPDTNAYNAVISNYISVGDFDECMKYYKGM 363 (558)
Q Consensus 332 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 363 (558)
|+.||..+|++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.2e-05 Score=73.03 Aligned_cols=215 Identities=7% Similarity=-0.021 Sum_probs=149.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAG-QVYKAIQMLGRLEDFGLKFDAESLNVVLWCL 243 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 243 (558)
+++.+-.++...++.++|+.+.+++.+.. +-+..+|+.--..+...| +++++++.++++.+...+ +..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 45556666777889999999999998763 224456666656666667 578999999998876543 556677666666
Q ss_pred HhcCCH--hHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCH
Q 008633 244 CQRLHV--GAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRA---GRI 318 (558)
Q Consensus 244 ~~~~~~--~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---g~~ 318 (558)
.+.|.. +++..+++.+.+..+-|..+|+...-++.+.|+++++++.++++.+.+.. |...|+.....+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 666653 67788888887776778889998888888889999999999999887643 556666655555443 222
Q ss_pred ----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 008633 319 ----DDAIEVFDTMKEKGCGPDTNAYNAVISNYISV----GDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLK 384 (558)
Q Consensus 319 ----~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 384 (558)
++..+...+++...+. |...|+.+...+... +...+|.+++.+..+.+ +.+......|+..|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 4566666666666444 667777777777663 34456777777766543 4456666677777764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00077 Score=70.46 Aligned_cols=262 Identities=13% Similarity=0.083 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008633 234 ESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLG 313 (558)
Q Consensus 234 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 313 (558)
.+|..+..+-.+.|.+.+|.+-|-+.. |...|.-+++...+.|.+++..+++...++..-+|...+ .|+-+|+
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyikad-----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyA 1177 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKAD-----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYA 1177 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhcC-----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHH
Confidence 344444444444444444444432221 344445555555555555555554444444433333332 3444455
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 314 RAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALE 393 (558)
Q Consensus 314 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 393 (558)
+.+++.+..++. .-||......+.+-|...|.++.|.-+|.. +..|..|...+...|++..|.+
T Consensus 1178 kt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1178 KTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHH
Confidence 544444433322 123444444444444445555544444432 2335555566666666666655
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCC
Q 008633 394 VFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGY 473 (558)
Q Consensus 394 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 473 (558)
.-++. .+..||..+-.+|...+.+.-| +|...++.....-...++..|-..|.+++.+.+++......
T Consensus 1242 ~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE- 1309 (1666)
T KOG0985|consen 1242 AARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE- 1309 (1666)
T ss_pred Hhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-
Confidence 43332 2445666666666555444333 22223344456667788999999999999999888765321
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCC-------HHHHHHHHHHHHhcCCHHHHH
Q 008633 474 PSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK-GFCPS-------RLVYSKLSNKLLASNKLESAY 532 (558)
Q Consensus 474 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-------~~~~~~l~~~~~~~g~~~~A~ 532 (558)
+.....|+-|.-.|.+- ++++..+.++-...+ ++ |. ...|..|+-.|.+-..++.|.
T Consensus 1310 RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNi-pKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1310 RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNI-PKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 22344666666666554 355555555544332 11 21 345666666666666555553
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00036 Score=64.38 Aligned_cols=294 Identities=13% Similarity=0.035 Sum_probs=173.7
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008633 211 AGQVYKAIQMLGRLEDFGLKFDAESLNVV-LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERV 289 (558)
Q Consensus 211 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 289 (558)
.-.+++|++++.++...+ |+-...|.- .-+|.+..-++.+.+++.--....|.+...-|..+....+.=+-..|.+-
T Consensus 164 R~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E 241 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDE 241 (557)
T ss_pred HHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHH
Confidence 345778888888877643 344444433 34566777777777777766666666666666665555443222222222
Q ss_pred HHHHHHcCC--------------------------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 008633 290 LKEIVAEGF--------------------------SPD-----SLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTN 338 (558)
Q Consensus 290 ~~~m~~~g~--------------------------~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 338 (558)
..++...+- -|. ...-..++-.|.+.+++.+|..+.+++.-. .|-..
T Consensus 242 ~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~Ey 319 (557)
T KOG3785|consen 242 KKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEY 319 (557)
T ss_pred HHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHH
Confidence 222222110 011 011223344466778888887776554211 11111
Q ss_pred HHHHHH-----HHHHhcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008633 339 AYNAVI-----SNYISVGDFDECMKYYKGMSSYNCEPNMD-TYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITS 412 (558)
Q Consensus 339 ~~~~li-----~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 412 (558)
....+. .-......+.-|.+.|+-.-+++..-|.. --.++...+.-..++++++-.++.....-..-|...+|
T Consensus 320 ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N- 398 (557)
T KOG3785|consen 320 ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN- 398 (557)
T ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-
Confidence 111111 11222234667777777766665444432 24456666677778888888888877664444444444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcC
Q 008633 413 FLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYV-IAGLCNIG 491 (558)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g 491 (558)
+..+++..|.+.+|+++|-++....++.+..-...|.++|.+.++++.|.+++-.+.. +.+..+.-.+ ..-|.+.+
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~ 475 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKAN 475 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHH
Confidence 6778999999999999998776655554444455677889999999998776655543 3344444444 45688889
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHH
Q 008633 492 QLENAVLVMEESLRKGFCPSRLV 514 (558)
Q Consensus 492 ~~~~A~~~~~~m~~~g~~p~~~~ 514 (558)
.+--|-+.|+++... .|++..
T Consensus 476 eFyyaaKAFd~lE~l--DP~pEn 496 (557)
T KOG3785|consen 476 EFYYAAKAFDELEIL--DPTPEN 496 (557)
T ss_pred HHHHHHHhhhHHHcc--CCCccc
Confidence 988888888877654 455443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.8e-05 Score=82.43 Aligned_cols=233 Identities=13% Similarity=0.092 Sum_probs=174.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 008633 301 DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK-GCG---PDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYT 376 (558)
Q Consensus 301 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 376 (558)
+...|..-|......++.++|.++.+++... ++. --...|.++++.-..-|.-+...++|+++.+.. -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3456777777788888899999988887654 111 123467778887777888888889999888752 2345678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcC
Q 008633 377 RLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCK-LSLTAYKLLLRRLSGF 455 (558)
Q Consensus 377 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 455 (558)
.|...|.+.+++++|.++++.|.++ ..-....|...+..+.++.+.+.|..++.++.+.-.+ -........++.-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8888899999999999999999876 2345667888888888888888898898888774211 1344555566667788
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 008633 456 GKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS--RLVYSKLSNKLLASNKLESAYN 533 (558)
Q Consensus 456 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~ 533 (558)
|+.+.+..+|+...... +--...|+.+|+.=.++|+.+.+..+|++.+..++.|- ...|...+..=-+.|+-+.++.
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 99999999999888653 44566899999999999999999999999999988776 4667777766666677655554
Q ss_pred HHHH
Q 008633 534 LFRK 537 (558)
Q Consensus 534 ~~~~ 537 (558)
+=.+
T Consensus 1693 VKar 1696 (1710)
T KOG1070|consen 1693 VKAR 1696 (1710)
T ss_pred HHHH
Confidence 4333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6e-05 Score=75.92 Aligned_cols=238 Identities=11% Similarity=0.079 Sum_probs=173.9
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHH
Q 008633 196 PDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVIS 275 (558)
Q Consensus 196 ~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~ 275 (558)
|--..-..+...+...|-...|..+++++. .|..+|.+|+..|+..+|..+..+-.+ .+|+...|..+.+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGD 465 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhh
Confidence 333344556677888899999999998754 566788899999999999998887776 6778899999998
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 276 GWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDE 355 (558)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 355 (558)
......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+...- -..+|-.+..+..+.+++..
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHH
Confidence 888777788888888765432 1112222234478899999998887766432 55678888888889999999
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008633 356 CMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARK 435 (558)
Q Consensus 356 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (558)
|.+.|....... +-+...||.+-.+|.+.++-.+|...+.+..+.+..+. ..+-..+....+.|.+++|.+.+.++..
T Consensus 538 av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w-~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 538 AVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW-QIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC-eeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999999887652 34567899999999999999999999999988774433 3343344456788999999999988765
Q ss_pred cC-CCCCHHHHHHHHHHHH
Q 008633 436 VG-CKLSLTAYKLLLRRLS 453 (558)
Q Consensus 436 ~~-~~~~~~~~~~li~~~~ 453 (558)
.. ...|..+...++....
T Consensus 616 ~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 616 LRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhhhcccchhhHHHHHHHH
Confidence 31 1224444444444433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0008 Score=65.74 Aligned_cols=151 Identities=13% Similarity=0.104 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCChhHHHHHHH
Q 008633 388 VADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKL-SLTAYKLLLRRLSGFGKCGMLLDLWH 466 (558)
Q Consensus 388 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 466 (558)
.+.....++++...-..--..+|..+++...+..-+..|..+|.++.+.+..+ ++..+++++.-+|. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 45555666666554222223456667777777778889999999998877666 77888888886664 66678888887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 467 EMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS--RLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 467 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
-=... ..-+..--...+..+.+.|+-..|..+|++.+..++.|+ ..+|..+++-=..-|+...+.++-+++..
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 65442 133444556778888888999999999999988876666 57899999888889999988888877654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.2e-05 Score=82.10 Aligned_cols=187 Identities=12% Similarity=0.070 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008633 236 LNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRA 315 (558)
Q Consensus 236 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 315 (558)
|.++++.-...|.-+...++|++.-+-.. ....|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+.
T Consensus 1500 WiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1500 WIAYLNLENAYGTEESLKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred HHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcc
Confidence 33444444444444444444444432211 1223444444455555555555555554443 112333444444444444
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008633 316 GRIDDAIEVFDTMKEKGCGP-DTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEV 394 (558)
Q Consensus 316 g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 394 (558)
++-+.|..++.+..+.-..- .+....-.+..-.+.|+.+.+..+|+...... +.-...|+..|+.-.+.|+.+.+..+
T Consensus 1578 ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred cHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHH
Confidence 44444555544444331110 11122223333344555555555555554332 33344555555555555555555555
Q ss_pred HHHHHHCCCCCCH--HHHHHHHHHHHhcCChhH
Q 008633 395 FEEMLDRGIVPST--GTITSFLEPLCSYGPPHA 425 (558)
Q Consensus 395 ~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~ 425 (558)
|++....++.|.. ..|.-.+..--..|+-+.
T Consensus 1657 feRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1657 FERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred HHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 5555555544432 334444432223344333
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-05 Score=78.96 Aligned_cols=221 Identities=12% Similarity=0.115 Sum_probs=149.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 312 LGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADA 391 (558)
Q Consensus 312 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 391 (558)
+.+.|++.+|.-.|+..++..+. +...|.-|.......++-..|+.-+++..+.. +-|......|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 34667777777777777776544 66677777777777777777777777777654 44566666677777777777777
Q ss_pred HHHHHHHHHCCCC-----C---CHHHHHHHHHHHHhcCChhHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 008633 392 LEVFEEMLDRGIV-----P---STGTITSFLEPLCSYGPPHAAMMMYKKA-RKVGCKLSLTAYKLLLRRLSGFGKCGMLL 462 (558)
Q Consensus 392 ~~~~~~m~~~~~~-----p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 462 (558)
..+++.-+....+ + +...-.. .............++|-++ ...+..+|+.++..|.-.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 7777776543210 0 0000000 0001111122333444443 44555678888888888888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 463 DLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 463 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
+.|+...... +-|...||-|...+....+.++|+..|.++++. .|+ +.+...|...|...|.+++|.+.|-...
T Consensus 451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9998888753 446678899998999989999999999998865 677 5677778888999999999888776544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.4e-06 Score=79.77 Aligned_cols=251 Identities=10% Similarity=0.040 Sum_probs=112.2
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAI 322 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 322 (558)
+.+.|++.+|.-.|+......|-+...|-.|.......++-..|+..+++..+.. +-|......|.-.|...|.-..|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 3445555555555555554445555555555555555555555555555555432 113344444445555555555555
Q ss_pred HHHHHHHHCCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHhh-hCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 323 EVFDTMKEKGCGP--------DTNAYNAVISNYISVGDFDECMKYYKGMS-SYNCEPNMDTYTRLISGLLKSRKVADALE 393 (558)
Q Consensus 323 ~~~~~m~~~g~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 393 (558)
+.++..+...++- +...-+. ..+.....+....++|-++. +.+..+|...+..|.-.|-..|++++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 5555543321100 0000000 01111112222333333332 22222444445555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHH--
Q 008633 394 VFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLS-LTAYKLLLRRLSGFGKCGMLLDLWHEMQE-- 470 (558)
Q Consensus 394 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 470 (558)
.|+..+... +-|..+||-|...++...+.++|+..|.++.+.. |+ +.+...|.-.|...|.+++|.+.|-..+.
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 555555432 2233445555555555555555555555555532 22 12222233335555555555554443321
Q ss_pred -C------CCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 008633 471 -S------GYPSDGEIYEYVIAGLCNIGQLENAVLV 499 (558)
Q Consensus 471 -~------~~~p~~~~~~~li~~~~~~g~~~~A~~~ 499 (558)
. +..++..+|.+|=.++.-.++.|.+.+.
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1 1122344566655556666665544443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.2e-05 Score=78.98 Aligned_cols=238 Identities=16% Similarity=0.146 Sum_probs=185.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008633 230 KFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLI 309 (558)
Q Consensus 230 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 309 (558)
+|--..-..+...+.+.|-...|..+|++.. .|.-+|.+|+..|+..+|..+..+..++ +||...|..+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 3444445567788899999999999998764 5778899999999999999999888873 68999999998
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 310 EGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVA 389 (558)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 389 (558)
+......-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+.+ +--..+|-.+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 8888877888888888775443 22233333445789999999999877654 456778888888899999999
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 008633 390 DALEVFEEMLDRGIVPST-GTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEM 468 (558)
Q Consensus 390 ~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 468 (558)
.|.+.|...... .||. ..||.+-.+|.+.++..+|...+++..+.+ .-+...|...+-...+.|.+++|++.+.++
T Consensus 537 ~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 537 AAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999999988774 5554 679999999999999999999999999987 556667777777788999999999999988
Q ss_pred HHCC-CCCCHHHHHHHHHHHH
Q 008633 469 QESG-YPSDGEIYEYVIAGLC 488 (558)
Q Consensus 469 ~~~~-~~p~~~~~~~li~~~~ 488 (558)
.+.. ...|......++....
T Consensus 614 l~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHhhhhcccchhhHHHHHHHH
Confidence 7421 1225455555555444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.4e-05 Score=75.97 Aligned_cols=318 Identities=18% Similarity=0.148 Sum_probs=180.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLC 244 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 244 (558)
.-.+.+.++...|+-+.|-++- .. +-.+ ...|..|.+.|...+|......-.. +..|......+..++.
T Consensus 591 lk~sy~q~l~dt~qd~ka~elk----~s----dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~ali 659 (1636)
T KOG3616|consen 591 LKRSYLQALMDTGQDEKAAELK----ES----DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALI 659 (1636)
T ss_pred HHHHHHHHHHhcCchhhhhhhc----cc----cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHH
Confidence 3455566777777777765432 11 1112 2457778888888777655422111 2235555555555555
Q ss_pred hcCCHhHHHHHHHHhhcC-----------------------CCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008633 245 QRLHVGAASSLFNSMKGK-----------------------VLFNVMTY-NIVISGWSKLGQVVEMERVLKEIVAEGFSP 300 (558)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~-----------------------~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 300 (558)
+..-+++|-.+|+++..- .|..+++. ......+...|+++.|..-|-+.
T Consensus 660 k~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea------- 732 (1636)
T KOG3616|consen 660 KGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA------- 732 (1636)
T ss_pred hhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh-------
Confidence 555555555555544321 11111110 01112222233333333333221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 008633 301 DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLIS 380 (558)
Q Consensus 301 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 380 (558)
......+.+...+..+.+|+.+++.+...... ..-|..+.+.|...|+++.|+++|.+.- .++-.|.
T Consensus 733 --~~~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~ 799 (1636)
T KOG3616|consen 733 --NCLIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAID 799 (1636)
T ss_pred --hhHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHH
Confidence 11223455566778888888888887766432 3356777888899999999998887543 2456678
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhH
Q 008633 381 GLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGM 460 (558)
Q Consensus 381 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 460 (558)
.|.++|++++|.++-.+.. |.......|.+-..-+-..|++.+|.++|-.+- .|+ ..|.+|-+.|..+.
T Consensus 800 my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~dd 868 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDD 868 (1636)
T ss_pred HHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchH
Confidence 8889999999888876653 223344555555555666788877777764332 232 23566777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 461 LLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFR 536 (558)
Q Consensus 461 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 536 (558)
.+++..+-...- -..|.-.+..-+-..|++..|...|-++- -|.+-++.|..++.|++|.++-+
T Consensus 869 mirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 869 MIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 766665443211 12245555666667777777776665432 34455566677777777766654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00027 Score=71.19 Aligned_cols=52 Identities=13% Similarity=0.069 Sum_probs=28.1
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 452 LSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
.+..+.++-|.++-+-..+.. .|. ....+...+-..|++++|-+.+-+.++.
T Consensus 973 a~d~~afd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 973 AADNCAFDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred hhcccchhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 334444455554444433322 222 2333444456778899988888777754
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.5e-05 Score=72.05 Aligned_cols=184 Identities=11% Similarity=0.031 Sum_probs=100.5
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChh---hHH
Q 008633 197 DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLK-F-DAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVM---TYN 271 (558)
Q Consensus 197 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~---~~~ 271 (558)
....+......+...|++++|...++++.+.... + ...++..+..++.+.|++++|...++++....|.+.. ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4566677777777788888888888777664321 1 1235566677777777777777777777654443332 344
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008633 272 IVISGWSKL--------GQVVEMERVLKEIVAEGFSPDS-LTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNA 342 (558)
Q Consensus 272 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 342 (558)
.+..++.+. |+.++|.+.|+.+.... |+. ..+..+... .. ... .. ......
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~-~~---~~~------~~--------~~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM-DY---LRN------RL--------AGKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH-HH---HHH------HH--------HHHHHH
Confidence 444555443 55666666666666542 222 111111100 00 000 00 001123
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 343 VISNYISVGDFDECMKYYKGMSSYN--CEPNMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 343 li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
+...|.+.|++++|...+++..+.. .+.....+..+..++.+.|++++|...++.+..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455666677777776666665542 011234566666666666666666666666554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.4e-05 Score=68.45 Aligned_cols=156 Identities=11% Similarity=0.089 Sum_probs=111.8
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHH
Q 008633 205 MDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVV 284 (558)
Q Consensus 205 i~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~ 284 (558)
+-.|...|+++.+....+.+.... .-+...++.+++...++......|.|...|..+...|...|+++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~------------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL------------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc------------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 456777788777655543332110 01122556677777777777767778888999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 285 EMERVLKEIVAEGFSPDSLTFSFLIEGL-GRAGR--IDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYK 361 (558)
Q Consensus 285 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 361 (558)
+|...|++..+.. +-+...+..+..++ ...|+ .++|.+++++..+.+.. +..++..+...+.+.|++++|+..|+
T Consensus 91 ~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998888764 23566677777664 56666 48889999888888665 77788888888888999999999999
Q ss_pred HhhhCCCCCCHHHH
Q 008633 362 GMSSYNCEPNMDTY 375 (558)
Q Consensus 362 ~m~~~~~~p~~~~~ 375 (558)
++.+.. +|+..-+
T Consensus 169 ~aL~l~-~~~~~r~ 181 (198)
T PRK10370 169 KVLDLN-SPRVNRT 181 (198)
T ss_pred HHHhhC-CCCccHH
Confidence 888764 4555443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00013 Score=74.23 Aligned_cols=240 Identities=14% Similarity=0.117 Sum_probs=133.0
Q ss_pred CHHHHHHHHH--HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhC-CC--------C
Q 008633 162 DVKSYNVIVK--ALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDF-GL--------K 230 (558)
Q Consensus 162 ~~~~~~~li~--~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~-g~--------~ 230 (558)
|..|-..|++ .|...|+.+.|.+-.+-.+ +...|..+.+.|.+..+++-|.-.+..|... |. .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3444444443 3456677777766555443 2356667777777766666666555544421 10 1
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008633 231 FDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIE 310 (558)
Q Consensus 231 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 310 (558)
++ ..-..+.-.....|.+++|+.+|.+-+. |..|=..|...|.+++|.++-+.=-.-.+ ..||..-..
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAK 866 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHH
Confidence 11 1111222223455666777777666543 33444555566777777665443211111 134444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 008633 311 GLGRAGRIDDAIEVFDTMKEK----------G---------CGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPN 371 (558)
Q Consensus 311 ~~~~~g~~~~a~~~~~~m~~~----------g---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 371 (558)
-+-..++.+.|++.|++.... . -..|...|.-....+-..|+++.|+.+|....+
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 444455666666655532111 0 011344455555566677788888888776653
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008633 372 MDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKAR 434 (558)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (558)
|-++++..|-.|+.++|-++-++- -|....-.+.+.|-..|++.+|...|.++.
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 566777777788888887775542 244445556777778888888888777654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.1e-05 Score=78.81 Aligned_cols=236 Identities=11% Similarity=0.116 Sum_probs=154.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHH
Q 008633 197 DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD-AESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVIS 275 (558)
Q Consensus 197 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~ 275 (558)
+...+..|+..+...+++++|.++.+...+.. |+ ...|-.+...+.+.++.+++..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh----------------hhhh
Confidence 56678888888888888888888888666542 22 22333333355555554444333 3333
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 276 GWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDE 355 (558)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 355 (558)
......++.-...+...|...+ -+...+..+..+|-+.|+.++|..+++++.+.... |+.+.|.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHH
Confidence 3444445544444445555432 24457778888888889999999999998888744 788888888888888 8888
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHH
Q 008633 356 CMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTG-TITSFLEPLCSYGPPHAAMMMYKKAR 434 (558)
Q Consensus 356 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (558)
|++++.+.... +...+++.++.+++.++.... |+.. .+-.++ +.+.
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i~----------------~ki~ 214 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRIE----------------RKVL 214 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchHHHHHH----------------HHHH
Confidence 88888877642 666778888888888888763 3322 222222 2222
Q ss_pred Hc-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008633 435 KV-GCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLC 488 (558)
Q Consensus 435 ~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 488 (558)
.. +..--..++-.+-..|-..++++++..+++.+.+.. +-|.....-++.+|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 21 222334555666677888888999999999998875 335556666666665
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.7e-05 Score=66.62 Aligned_cols=160 Identities=14% Similarity=0.079 Sum_probs=98.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC
Q 008633 202 SIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLG 281 (558)
Q Consensus 202 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g 281 (558)
...-..+.-.|+-+.+..+....... ...|....+.++....+.|++..|...|++.....|+|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 44455555566666666555554322 23355555566666777777777777777776666667777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 282 QVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYK 361 (558)
Q Consensus 282 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 361 (558)
++++|..-|.+..+.. .-+...++.+.-.+.-.|+.+.|..++......+.. |..+-..+.......|++++|.++-.
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 7777777776666542 123345555666666666777777766666655443 44555556666666677776666655
Q ss_pred Hhh
Q 008633 362 GMS 364 (558)
Q Consensus 362 ~m~ 364 (558)
.-.
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.7e-05 Score=70.95 Aligned_cols=189 Identities=9% Similarity=-0.029 Sum_probs=135.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCH--
Q 008633 159 VAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD---LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDA-- 233 (558)
Q Consensus 159 ~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~---~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-- 233 (558)
.......+-.+...+...|++++|...|++...... .+ ..++..+..++...|++++|+..++++.+.......
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 356778888899999999999999999999987632 12 246778889999999999999999999875432111
Q ss_pred HHHHHHHHHHHhc--------CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 008633 234 ESLNVVLWCLCQR--------LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTF 305 (558)
Q Consensus 234 ~~~~~ll~~~~~~--------~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 305 (558)
.++..+..++... |+.+.|.+.|+.+....|-+...+..+..... .... .. ...
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~------~~--------~~~ 169 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNR------LA--------GKE 169 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHH------HH--------HHH
Confidence 2455555666554 77899999999998766655555433322211 0000 00 111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 008633 306 SFLIEGLGRAGRIDDAIEVFDTMKEKGC--GPDTNAYNAVISNYISVGDFDECMKYYKGMSSY 366 (558)
Q Consensus 306 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 366 (558)
..+...+.+.|++.+|...++...+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455678899999999999999887632 223567888999999999999999999888754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.8e-05 Score=66.22 Aligned_cols=164 Identities=13% Similarity=0.059 Sum_probs=135.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008633 232 DAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEG 311 (558)
Q Consensus 232 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 311 (558)
|..+ ..+-..+...|+-+.+..+........+.|....+..+....+.|++.+|...+++..... ++|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHH
Confidence 4444 5566677778888888888887766666677788889999999999999999999988753 6788999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 312 LGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADA 391 (558)
Q Consensus 312 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 391 (558)
|.+.|+.++|..-|.+..+.-.. +...++.|.-.|.-.|+.+.|..++......+ .-|...-..+.......|++++|
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHH
Confidence 99999999999999999887544 56678888888999999999999999988764 44777778888888999999999
Q ss_pred HHHHHHHH
Q 008633 392 LEVFEEML 399 (558)
Q Consensus 392 ~~~~~~m~ 399 (558)
.++...-.
T Consensus 222 ~~i~~~e~ 229 (257)
T COG5010 222 EDIAVQEL 229 (257)
T ss_pred Hhhccccc
Confidence 98865543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00024 Score=69.27 Aligned_cols=353 Identities=13% Similarity=0.057 Sum_probs=223.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCH
Q 008633 171 KALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD-AESLNVVLWCLCQRLHV 249 (558)
Q Consensus 171 ~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~~~~ 249 (558)
++....|+++.|+..|.+..... ++|..-|..-..+|+..|++++|++=-.+-++. .|+ ...|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 56678899999999999998875 458888999999999999999998877776664 444 46799999999999999
Q ss_pred hHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHH---HHHHHHHHc---CCCCCHHHHHHHHHHHHhc--------
Q 008633 250 GAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEME---RVLKEIVAE---GFSPDSLTFSFLIEGLGRA-------- 315 (558)
Q Consensus 250 ~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~---g~~p~~~t~~~ll~~~~~~-------- 315 (558)
++|+.-|.+-.+..+.|...++.+..++.......+.. .++..+... ........|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 99999999988888888999999998882111110000 111111110 0001112233333332221
Q ss_pred --CCHHHHHHHHHHH-----HHCC-------CCC----------------------CHHHHHHHHHHHHhcCCHHHHHHH
Q 008633 316 --GRIDDAIEVFDTM-----KEKG-------CGP----------------------DTNAYNAVISNYISVGDFDECMKY 359 (558)
Q Consensus 316 --g~~~~a~~~~~~m-----~~~g-------~~p----------------------~~~~~~~li~~~~~~g~~~~A~~~ 359 (558)
.++..+...+... ...| ..| -..-...+.++..+..+++.|.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 1111222111110 0001 111 012345567777788888888888
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHhcCChhHHHHHHHH
Q 008633 360 YKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTIT-------SFLEPLCSYGPPHAAMMMYKK 432 (558)
Q Consensus 360 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-------~ll~~~~~~g~~~~a~~~~~~ 432 (558)
+....+.. -+..-++....+|...|.+.+....-....+.|... ..-|+ .+..++.+.++++.|+..|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 88887653 444555666677888887777776666655554211 11122 233355566778888888887
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 008633 433 ARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDG-EIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS 511 (558)
Q Consensus 433 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 511 (558)
.......|+. ..+....++++.......-. .|.. .-...-...+.+.|++..|+..|.+++.+. +-|
T Consensus 324 aLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~D 391 (539)
T KOG0548|consen 324 ALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PED 391 (539)
T ss_pred HhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cch
Confidence 6665444332 22223344444444444332 2222 122233667889999999999999999885 455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 512 RLVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
...|....-+|.+.|.+.+|..-.+...+.
T Consensus 392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 392 ARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 889999999999999999999987777654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.3e-05 Score=66.77 Aligned_cols=119 Identities=9% Similarity=0.071 Sum_probs=72.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HcCCC--hhHH
Q 008633 385 SRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRL-SGFGK--CGML 461 (558)
Q Consensus 385 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A 461 (558)
.++.+++...++...+.+ +.+...|..+...|...|+++.|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666655543 3455566666666666677777777776666654 33555555555543 45555 3666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 462 LDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 462 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
.+++++..+.+ +-+...+..+...+...|++++|+..|+++++.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66776666654 335556666666666667777777777766654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00025 Score=75.61 Aligned_cols=240 Identities=13% Similarity=0.153 Sum_probs=155.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDL-ETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNV 238 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~-~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 238 (558)
+.+...|..|+..+...+++++|.++++...+. .|+. ..|-.+...+.+.++.+.+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 446678899999998999999999999876665 3433 3333333366666665555444 2
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 008633 239 VLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRI 318 (558)
Q Consensus 239 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 318 (558)
++.......++..+..+...|.. .+-+..++-.+..+|-+.|+.++|..+|+++.+.. +-|....|.+...|... ++
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 22333333444333333333332 33356678888999999999999999999998876 44678888888888888 89
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 319 DDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEM 398 (558)
Q Consensus 319 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (558)
++|.+++.+.... |...+++.++.++|.++.... +-+...+-.+.+.....-
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~------------ 217 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHR------------ 217 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhh------------
Confidence 9998888776554 666778889999999888753 222223333332222221
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008633 399 LDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLS 453 (558)
Q Consensus 399 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 453 (558)
|..--..++-.+-..|-..++++++..+++.+.+... -|.....-++.+|.
T Consensus 218 ---~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 ---EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred ---ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 1112233444555567777889999999999888653 34455555665554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0009 Score=59.63 Aligned_cols=118 Identities=19% Similarity=0.204 Sum_probs=57.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----
Q 008633 309 IEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLK---- 384 (558)
Q Consensus 309 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---- 384 (558)
...|++.|++++|++..+... +......=+..+.+..+++-|.+.+++|.+- -+..|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 344555555665555554411 1122222233344555555566666655542 234444545544443
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 008633 385 SRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKV 436 (558)
Q Consensus 385 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (558)
.+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..+++.+...
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 23455555555555443 3455555555555555555555555555555543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0011 Score=67.77 Aligned_cols=331 Identities=15% Similarity=0.117 Sum_probs=200.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKE-GV--------NPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKF 231 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~-g~--------~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~ 231 (558)
.+-..|..|.+.|.+.++.+-|.-.+-.|... |. .++ .+=..+.-.....|.+++|..+|.+.++.
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---- 829 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---- 829 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH----
Confidence 35578999999999999988887777777532 21 122 33334444456789999999999988764
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH----------HHcC----
Q 008633 232 DAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEI----------VAEG---- 297 (558)
Q Consensus 232 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----------~~~g---- 297 (558)
..|=..|-..|.+++|.++-+.-.. +. =..||..-..-+-..++.+.|++.|++. ....
T Consensus 830 -----DLlNKlyQs~g~w~eA~eiAE~~DR-iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~ 902 (1416)
T KOG3617|consen 830 -----DLLNKLYQSQGMWSEAFEIAETKDR-IH-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQI 902 (1416)
T ss_pred -----HHHHHHHHhcccHHHHHHHHhhccc-ee-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHH
Confidence 3344567778999999998765432 11 2346666667777778888888877643 2211
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 008633 298 -----FSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNM 372 (558)
Q Consensus 298 -----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 372 (558)
-..|...|.--...+-..|+++.|+.+|..... |-++++..|-.|+.++|-++-++-. |.
T Consensus 903 e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~ 967 (1416)
T KOG3617|consen 903 EQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DK 967 (1416)
T ss_pred HHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cH
Confidence 011333334444444556777777777766543 4567777788899999988877643 55
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------------cCChhHHHHHHHHHHHcC
Q 008633 373 DTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCS---------------YGPPHAAMMMYKKARKVG 437 (558)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~---------------~g~~~~a~~~~~~~~~~~ 437 (558)
...-.|.+.|-..|++.+|...|.+... |...|+.|-. ..+.-.|-++|++. |
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g 1035 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---G 1035 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---c
Confidence 5666788888888999999888876542 2222322111 11222233333322 2
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHH--------HHH--CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh--
Q 008633 438 CKLSLTAYKLLLRRLSGFGKCGMLLDLWHE--------MQE--SGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLR-- 505 (558)
Q Consensus 438 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--------m~~--~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 505 (558)
.. ....+..|.++|.+.+|+++--+ ++. ..-..|+...+.-...++...++++|..++-...+
T Consensus 1036 ~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~ 1110 (1416)
T KOG3617|consen 1036 GY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFS 1110 (1416)
T ss_pred hh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 11 12233457778888777654311 122 22234556666666666666666666655543321
Q ss_pred --------CC----------------CCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 506 --------KG----------------FCPS----RLVYSKLSNKLLASNKLESAYNLF 535 (558)
Q Consensus 506 --------~g----------------~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 535 (558)
+| -.|+ ..+...+.+.|.+.|.+..|.+-|
T Consensus 1111 ~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1111 GALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred HHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 11 1233 345667778888999887776544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00017 Score=76.00 Aligned_cols=163 Identities=9% Similarity=0.061 Sum_probs=128.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008633 229 LKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFL 308 (558)
Q Consensus 229 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 308 (558)
+..++..+-.|.....+.|..++|..+++...+..|.+......++..+.+.+++++|+...++..... +-+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 455788888999999999999999999999988888888899999999999999999999999998864 2245667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 309 IEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKV 388 (558)
Q Consensus 309 l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 388 (558)
..++.+.|++++|..+|+++...+.. +..++..+..++.+.|+.++|...|++..+.. .+....|+..+. +.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HH
Confidence 78888999999999999999985433 57788889999999999999999999988653 344555554443 33
Q ss_pred HHHHHHHHHHHH
Q 008633 389 ADALEVFEEMLD 400 (558)
Q Consensus 389 ~~A~~~~~~m~~ 400 (558)
..-...++++.-
T Consensus 233 ~~~~~~~~~~~~ 244 (694)
T PRK15179 233 NADLAALRRLGV 244 (694)
T ss_pred HHHHHHHHHcCc
Confidence 334445555543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.8e-06 Score=68.94 Aligned_cols=90 Identities=8% Similarity=-0.129 Sum_probs=47.3
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 448 LLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNK 527 (558)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 527 (558)
+...+...|++++|...|+...... +.+...|..+..++...|++++|+..|+++.+.. +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444555555555555555555443 3344455555555555555555555555555432 2234555555555555555
Q ss_pred HHHHHHHHHHHH
Q 008633 528 LESAYNLFRKIK 539 (558)
Q Consensus 528 ~~~A~~~~~~m~ 539 (558)
+++|...+++..
T Consensus 108 ~~eAi~~~~~Al 119 (144)
T PRK15359 108 PGLAREAFQTAI 119 (144)
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0034 Score=61.57 Aligned_cols=353 Identities=14% Similarity=0.124 Sum_probs=209.4
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHH
Q 008633 195 NPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVI 274 (558)
Q Consensus 195 ~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li 274 (558)
+-|..+|..||+-+... ..+++.+.++++... ++-....|..-|..-.+.++++..+.+|.+-..++- +...|..-+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHHHH
Confidence 55899999999987665 999999999999864 345678899999999999999999999998754432 677887777
Q ss_pred HHHHhc-CCHHH----HHHHHHHH-HHcCCCCCH-HHHHHHH---HH------HHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 008633 275 SGWSKL-GQVVE----MERVLKEI-VAEGFSPDS-LTFSFLI---EG------LGRAGRIDDAIEVFDTMKEKGCGPDTN 338 (558)
Q Consensus 275 ~~~~~~-g~~~~----A~~~~~~m-~~~g~~p~~-~t~~~ll---~~------~~~~g~~~~a~~~~~~m~~~g~~p~~~ 338 (558)
.--.+. |+... ..+.|+-. .+.|+.+-. ..|+..+ .. +....+++...+++.++...-+.-=..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 655443 22222 23334433 334544332 2233333 32 334446677888888888763321111
Q ss_pred H------HHHHHHHH-------HhcCCHHHHHHHHHHhhh--CCCCCCHH---------------HHHHHHH--------
Q 008633 339 A------YNAVISNY-------ISVGDFDECMKYYKGMSS--YNCEPNMD---------------TYTRLIS-------- 380 (558)
Q Consensus 339 ~------~~~li~~~-------~~~g~~~~A~~~~~~m~~--~~~~p~~~---------------~~~~li~-------- 380 (558)
. |..=|+.. -+...+..|.++++++.. .|...+.. .|-.+|.
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 2 21111111 122245556666665532 22111111 1211111
Q ss_pred -----------------------------------------HHHhcCC-------HHHHHHHHHHHHHCCCCCCHHHHHH
Q 008633 381 -----------------------------------------GLLKSRK-------VADALEVFEEMLDRGIVPSTGTITS 412 (558)
Q Consensus 381 -----------------------------------------~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~~~~~ 412 (558)
.+...|+ -+++..+++..+..-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111122 2333344443333222222233333
Q ss_pred HHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 008633 413 FLEPLCSYG---PPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPS-DGEIYEYVIAGLC 488 (558)
Q Consensus 413 ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~ 488 (558)
+.+---..- ..+.....++++......--.-+|..+|+...+...+..|..+|.+..+.+..+ ++.++++++..+|
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 222111111 234444555555543222233567778888888888999999999999887777 6777888888666
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchh-hhhhc
Q 008633 489 NIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYA-RRLWR 552 (558)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~ 552 (558)
.++.+-|.++|+--+++ +.-++.--...++-+...|+-..|..+|++....++.++. ..+|+
T Consensus 414 -skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~ 476 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWD 476 (656)
T ss_pred -cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHH
Confidence 46788999999987765 2233455567788888999999999999999988666443 46664
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00024 Score=74.10 Aligned_cols=161 Identities=9% Similarity=0.014 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGL-KFDAESLNVVLWCL 243 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~ll~~~ 243 (558)
.|..|...|+...+...|...|+..-+.. ..|......+.+.|++..+++.|..+.-..-+... ..-..-|..+.-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 34444444444444445555555544432 12444555555555555555555555222111100 00011122223334
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHhcCCHHHH
Q 008633 244 CQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFL--IEGLGRAGRIDDA 321 (558)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l~~~~~~g~~~~a 321 (558)
.+.++...|..-|+......|-|...|..++.+|...|++..|.++|.+.... .|+. +|... .-..+..|++.+|
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHH
Confidence 44555555555555554444456666666666666666666666666655442 2322 22211 1223445666666
Q ss_pred HHHHHHHH
Q 008633 322 IEVFDTMK 329 (558)
Q Consensus 322 ~~~~~~m~ 329 (558)
...+....
T Consensus 650 ld~l~~ii 657 (1238)
T KOG1127|consen 650 LDALGLII 657 (1238)
T ss_pred HHHHHHHH
Confidence 66655544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00064 Score=65.84 Aligned_cols=138 Identities=15% Similarity=0.153 Sum_probs=83.0
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD-SLTFSFLIEGLGRAGRIDDA 321 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a 321 (558)
+...|+.+.|+..++.+....|-|...+......+.+.++.++|.+.++++... .|+ ......+..++.+.|+..+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 334566666666666666656666666666666666666666666666666654 344 33444555666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 322 IEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 322 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
..+++........ |+..|..|..+|...|+..+|..-.- .+|...|++++|+..+....+.
T Consensus 394 i~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 6666666555333 56666666666666666665544333 2334456666666666655543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00039 Score=73.36 Aligned_cols=198 Identities=9% Similarity=0.049 Sum_probs=151.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 008633 178 FFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFN 257 (558)
Q Consensus 178 ~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 257 (558)
...+++.-+....+. ...++..+..|.....+.|..++|..+++.+.+.. +-+......+...+.+.+++++|+..++
T Consensus 67 ~~~~~~~~~~~~~~~-~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~ 144 (694)
T PRK15179 67 KPAAALPELLDYVRR-YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIE 144 (694)
T ss_pred chHhhHHHHHHHHHh-ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 333333333333333 45578999999999999999999999999999864 2256778889999999999999999999
Q ss_pred HhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008633 258 SMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDT 337 (558)
Q Consensus 258 ~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 337 (558)
+.....|-+....+.+..++.+.|++++|..+|++....+ .-+..++..+..++...|+.++|...|+...+.- .+..
T Consensus 145 ~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~ 222 (694)
T PRK15179 145 LYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGA 222 (694)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-Ccch
Confidence 9998888899999999999999999999999999999843 3347889999999999999999999999998763 2344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCCCHHHHHHHHHHHHhc
Q 008633 338 NAYNAVISNYISVGDFDECMKYYKGMSSYN----CEPNMDTYTRLISGLLKS 385 (558)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~ 385 (558)
..|+..+ +++..-..+++++.-.+ ....+.+...+|.-|.+.
T Consensus 223 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 223 RKLTRRL------VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHH------HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 5555443 33444556666665433 333445556666666554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00094 Score=59.51 Aligned_cols=174 Identities=14% Similarity=0.116 Sum_probs=123.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 322 IEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 322 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
.++.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+++-|...+++|.+-
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444555544444344444445567889999999999988732 3444555566778888999999999999874
Q ss_pred CCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH
Q 008633 402 GIVPSTGTITSFLEPLCS----YGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDG 477 (558)
Q Consensus 402 ~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 477 (558)
-+..|.+.|..++.+ .+.+..|.-+|+++.+. ..|+..+.+....++...|++++|..++++..... .-+.
T Consensus 167 ---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dp 241 (299)
T KOG3081|consen 167 ---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDP 241 (299)
T ss_pred ---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCH
Confidence 356777777777765 34677888888888763 46888888888888888999999999999888765 3467
Q ss_pred HHHHHHHHHHHhcCCHhHH-HHHHHHHHhC
Q 008633 478 EIYEYVIAGLCNIGQLENA-VLVMEESLRK 506 (558)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A-~~~~~~m~~~ 506 (558)
.+...+|..-...|...++ .+.+.++...
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 7777777776667765443 4555555543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0072 Score=62.91 Aligned_cols=223 Identities=14% Similarity=0.065 Sum_probs=112.5
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 008633 209 IRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC--LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEM 286 (558)
Q Consensus 209 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A 286 (558)
...+++.+|.+....+.+.- |+. .|..++.+ +.+.|+.++|..+++......+.|..|...+-.+|...|+.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 35567777777777666432 232 12222222 34567777777777766554444667777777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------CHHHH
Q 008633 287 ERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVG----------DFDEC 356 (558)
Q Consensus 287 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------~~~~A 356 (558)
..+|++.... -|+......+..+|.+.+.+.+-.++--+|-+. .+-+...+=++++.+...- -..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 7777776654 355666666666677666665544333333332 2223333334444443321 12334
Q ss_pred HHHHHHhhhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008633 357 MKYYKGMSSYNCE-PNMDTYTRLISGLLKSRKVADALEVFE-EMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKAR 434 (558)
Q Consensus 357 ~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (558)
.+.++.+.+.+.+ -+..-...-...+-..|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 4455555443211 111111111222334556666666662 23232222233333344444555566666666666655
Q ss_pred HcC
Q 008633 435 KVG 437 (558)
Q Consensus 435 ~~~ 437 (558)
..+
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00094 Score=64.71 Aligned_cols=137 Identities=13% Similarity=0.144 Sum_probs=76.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 008633 312 LGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPN-MDTYTRLISGLLKSRKVAD 390 (558)
Q Consensus 312 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~ 390 (558)
+...|++++|+..++.+.+.-. -|+.......+.+.+.++.++|.+.++++... .|+ ...+-.+..+|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 3345666666666666555422 24445555556666666666666666666554 343 3444455566666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 008633 391 ALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQE 470 (558)
Q Consensus 391 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 470 (558)
|+.++++..... +-|...|..|..+|...|+..++.....+. |...|+++.|...+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHH
Confidence 666666655542 445556666666666666655554443322 3344556666655555554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0012 Score=69.15 Aligned_cols=373 Identities=11% Similarity=0.002 Sum_probs=213.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEG-VNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g-~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
-+..++....+.|++..++++|..+.-..-+.. ...-...|....-.|.+.++...|+.-|+...+..+ -|...|..+
T Consensus 524 tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gL 602 (1238)
T KOG1127|consen 524 TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGL 602 (1238)
T ss_pred hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHH
Confidence 467889999999999999999999843332221 011122344455567788999999999999988753 388899999
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHH
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE------GFSPDSLTFSFLIEGLG 313 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~ 313 (558)
..+|.++|++..|.++|.+...-.|.+...---..-.-+..|++.+|+..+...... +..--..++..+...+.
T Consensus 603 GeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~ 682 (1238)
T KOG1127|consen 603 GEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSA 682 (1238)
T ss_pred HHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999999999999999999887654444444444555667889999999988877653 11122334444444444
Q ss_pred hcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCCHH------HHHHHHH-HhhhCCC-----------
Q 008633 314 RAGRIDDAIEVFDTMKE-------KGCGPDTNAYNAVISNYISVGDFD------ECMKYYK-GMSSYNC----------- 368 (558)
Q Consensus 314 ~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g~~~------~A~~~~~-~m~~~~~----------- 368 (558)
-.|-..++..+++.-++ .....+...|-.+-++|.-.-..+ ....++. +....+.
T Consensus 683 ~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~ 762 (1238)
T KOG1127|consen 683 ITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGY 762 (1238)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHH
Confidence 44444444444443322 221223333332222221110000 0000010 1111111
Q ss_pred ---------CCCHHHHHHHHHHHHh----c----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 008633 369 ---------EPNMDTYTRLISGLLK----S----RKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYK 431 (558)
Q Consensus 369 ---------~p~~~~~~~li~~~~~----~----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 431 (558)
..+..+|..++..|.+ . .+...|+..+++.++.. .-+..+++.|. .....|.+.-|...|-
T Consensus 763 ~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLG-Vlsg~gnva~aQHCfI 840 (1238)
T KOG1127|consen 763 ECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALG-VLSGIGNVACAQHCFI 840 (1238)
T ss_pred HHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHH-Hhhccchhhhhhhhhh
Confidence 1123334444444333 1 12345667776666542 23444555544 3444466666655554
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh----CC
Q 008633 432 KARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLR----KG 507 (558)
Q Consensus 432 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g 507 (558)
+-.... +....+|..+.-.+.+..+++.|...|...+... +.|...|--........|+.-++..+|..-.+ .|
T Consensus 841 ks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~g 918 (1238)
T KOG1127|consen 841 KSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEG 918 (1238)
T ss_pred hhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcccc
Confidence 444332 3455667777667778888888888888877654 44555665555555566777777777765221 23
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 508 FCPSRLVYSKLSNKLLASNKLESAYNLFRKI 538 (558)
Q Consensus 508 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 538 (558)
-.|+..-|......-...|+.++-+.-.+++
T Consensus 919 ka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 919 KAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred ccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 3455444555555555666666555544444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0016 Score=57.69 Aligned_cols=163 Identities=15% Similarity=0.140 Sum_probs=81.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008633 236 LNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRA 315 (558)
Q Consensus 236 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 315 (558)
|..++-+....|+.+.|...++++..+.|-+...-..-.-.+-..|++++|+++++.+.+.. +.|.++|.--+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 34444455555556666666655555443333222222222334466666666666666554 33445555444444445
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 008633 316 GRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSR---KVADAL 392 (558)
Q Consensus 316 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~ 392 (558)
|+--+|++-+.+..+. +.-|...|.-+...|...|++++|.-.++++.-.. +-+...+..+...+...| +.+-|.
T Consensus 134 GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5555555555555544 33366666666666666666666666666665432 222333333333333222 344455
Q ss_pred HHHHHHHHC
Q 008633 393 EVFEEMLDR 401 (558)
Q Consensus 393 ~~~~~m~~~ 401 (558)
+.|.+..+.
T Consensus 212 kyy~~alkl 220 (289)
T KOG3060|consen 212 KYYERALKL 220 (289)
T ss_pred HHHHHHHHh
Confidence 555555543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.014 Score=60.91 Aligned_cols=195 Identities=15% Similarity=0.114 Sum_probs=130.8
Q ss_pred HHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008633 166 YNVIVKAL--GRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCL 243 (558)
Q Consensus 166 ~~~li~~~--~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 243 (558)
|...+.++ .+.|+.++|..+++.....+.. |..|...+-..|-..|+.++|..+|++.... .|+..-...+..+|
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmay 120 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAY 120 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHH
Confidence 44555554 5789999999888888776644 8889999999999999999999999998865 45677788888888
Q ss_pred HhcCCHhH----HHHHHHHhhcCCCCChhhHHHHHHHHHhcC----------CHHHHHHHHHHHHHcC-CCCCHHHHHHH
Q 008633 244 CQRLHVGA----ASSLFNSMKGKVLFNVMTYNIVISGWSKLG----------QVVEMERVLKEIVAEG-FSPDSLTFSFL 308 (558)
Q Consensus 244 ~~~~~~~~----A~~~~~~m~~~~~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~m~~~g-~~p~~~t~~~l 308 (558)
++.+.+.+ |.+++... |-+...+=.+++.+...- -..-|.+.++.+.+.+ ..-+..-...-
T Consensus 121 vR~~~yk~qQkaa~~LyK~~----pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Ly 196 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKNF----PKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILY 196 (932)
T ss_pred HHHHHHHHHHHHHHHHHHhC----CcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 88887765 44555433 334444444444443321 1234556666666554 21122222223
Q ss_pred HHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 008633 309 IEGLGRAGRIDDAIEVF-DTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYN 367 (558)
Q Consensus 309 l~~~~~~g~~~~a~~~~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 367 (558)
...+-..|++++|.+++ ....+.-..-+...-+--++.+...+++.+..++-.++...|
T Consensus 197 l~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 197 LLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 34455678899999888 344444344455555667788888899999888888888775
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.8e-05 Score=61.93 Aligned_cols=50 Identities=10% Similarity=-0.005 Sum_probs=18.6
Q ss_pred hcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 245 QRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIV 294 (558)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (558)
..|++++|...|+......|.+...|..+..++.+.|++++|...|+...
T Consensus 36 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 36 QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0035 Score=55.57 Aligned_cols=188 Identities=13% Similarity=0.085 Sum_probs=136.4
Q ss_pred CChHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 008633 177 KFFDFMCNVLSDMAKE---G-VNPDLE-TLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGA 251 (558)
Q Consensus 177 ~~~~~a~~l~~~m~~~---g-~~~~~~-t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~ 251 (558)
.+.++.++++.+|... | ..++.. .|..++-+....|+.+.|...++.+...- +-+..+-..-...+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 4566777777776532 3 445544 45667777778899999999998887542 3333333333334556788999
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 252 ASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK 331 (558)
Q Consensus 252 A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 331 (558)
|.++++.+.+..|.|.++|---+...-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-.
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 999999998888888888887777777788888888888887765 5668899999999999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCC
Q 008633 332 GCGPDTNAYNAVISNYISVG---DFDECMKYYKGMSSYN 367 (558)
Q Consensus 332 g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~ 367 (558)
.+. +...+..+.+.+.-.| +++-|.++|.+..+..
T Consensus 184 ~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 184 QPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred CCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 332 5555566666554444 5777888888888653
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.4e-06 Score=50.35 Aligned_cols=33 Identities=42% Similarity=0.740 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD 301 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 301 (558)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.2e-06 Score=50.06 Aligned_cols=33 Identities=21% Similarity=0.522 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD 197 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~ 197 (558)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888876
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00027 Score=58.70 Aligned_cols=92 Identities=12% Similarity=0.096 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 271 NIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV 350 (558)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 350 (558)
..+...+...|++++|...++.....+ +.+...+..+...+.+.|++++|..+++...+.+.. +...+..+...|...
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHc
Confidence 333333444444444444444433322 112333333333344444444444444433333211 233333333444444
Q ss_pred CCHHHHHHHHHHhh
Q 008633 351 GDFDECMKYYKGMS 364 (558)
Q Consensus 351 g~~~~A~~~~~~m~ 364 (558)
|++++|.+.|+...
T Consensus 99 g~~~~A~~~~~~al 112 (135)
T TIGR02552 99 GEPESALKALDLAI 112 (135)
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.6e-06 Score=49.60 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 008633 164 KSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNP 196 (558)
Q Consensus 164 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~ 196 (558)
.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00013 Score=71.09 Aligned_cols=123 Identities=15% Similarity=0.150 Sum_probs=92.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008633 168 VIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRL 247 (558)
Q Consensus 168 ~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~ 247 (558)
.|+..+...++++.|..+|+++.+.. |+ ....+++.+...++-.+|++++++..+.. +.+...+..-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34445556788888888888888764 44 34457777777888888888888887543 336666777777788888
Q ss_pred CHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 248 HVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 248 ~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
+.+.|+++.+++....|.+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888888888888877777777888888888888888888887776643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.018 Score=58.21 Aligned_cols=122 Identities=7% Similarity=-0.060 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCC--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKE-GVNP--------DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLK 230 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~-g~~~--------~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 230 (558)
.|....|..+.......-.++-|...|-+...- |++. +...-.+=+. +--|++++|.++|-+|.++.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence 367788999988888777777777777665432 3321 0111111122 234889999999987776532
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 231 FDAESLNVVLWCLCQRLHVGAASSLFNSMKGK--VLFNVMTYNIVISGWSKLGQVVEMERVLKE 292 (558)
Q Consensus 231 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (558)
.|..+.+.|++-.+.++++.-... ...-...|+.+...++....|++|.+.|..
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666777777776666543221 111234566666666666666666665543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.1e-05 Score=48.51 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008633 268 MTYNIVISGWSKLGQVVEMERVLKEIVAEGFSP 300 (558)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 300 (558)
.+||+++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666555
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00035 Score=58.01 Aligned_cols=97 Identities=10% Similarity=0.072 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 008633 199 ETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWS 278 (558)
Q Consensus 199 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~ 278 (558)
.....+...+...|+.++|.+.++.+...+ +.+...+..+..++.+.|++++|...+++.....+.+...+..+...+.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 334444555555566666666666555543 2244555555555555666666666665554444445555555666666
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 008633 279 KLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 279 ~~g~~~~A~~~~~~m~~~ 296 (558)
..|++++|...|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666655553
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00049 Score=67.16 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=54.3
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRID 319 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 319 (558)
+..+...++++.|.++|+++.... ......++..+...++-.+|.+++.+..+.. +-+...+..-...+.+.++.+
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD---PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 333334445555555555554432 1223334444444455555555555544331 123333333444444555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 008633 320 DAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMS 364 (558)
Q Consensus 320 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 364 (558)
.|.++.+++.+..+. +-.+|..|..+|.+.|+++.|+..++.+.
T Consensus 252 lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 252 LALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 555555555444221 33345555555555555555555554443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00086 Score=56.42 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=10.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 008633 275 SGWSKLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~m~~~ 296 (558)
..+...|++++|...|+.....
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALAN 77 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh
Confidence 4444444444444444444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0002 Score=70.11 Aligned_cols=124 Identities=17% Similarity=0.166 Sum_probs=81.0
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 008633 262 KVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE--GFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNA 339 (558)
Q Consensus 262 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 339 (558)
..+.+......+++.+....+++++..++.+.... ....-..|..++++.|.+.|..+++++++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556666666777776666777777777766654 2212233445777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc
Q 008633 340 YNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKS 385 (558)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 385 (558)
+|.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777776665555556665555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00022 Score=69.91 Aligned_cols=120 Identities=8% Similarity=0.042 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 008633 370 PNMDTYTRLISGLLKSRKVADALEVFEEMLDR--GIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKL 447 (558)
Q Consensus 370 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 447 (558)
.+......+++.+....+++++..++.+.... ....-..|..++++.|...|..+.++.+++.=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34444444444444444455555555444433 1111122333455555555555555555554444555555555555
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008633 448 LLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCN 489 (558)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 489 (558)
||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 555555555555555555444443333344444444444333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.8e-05 Score=67.92 Aligned_cols=100 Identities=22% Similarity=0.220 Sum_probs=62.6
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 008633 452 LSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLES 530 (558)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 530 (558)
+.+.+++++|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+..+.. .|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 445566666666666666653 335555556666666777777776666666643 344 4666667777777777777
Q ss_pred HHHHHHHHHHhcCCchhhhhhcccCC
Q 008633 531 AYNLFRKIKIARQNDYARRLWRSKGW 556 (558)
Q Consensus 531 A~~~~~~m~~~~~~~~~~~~~~~~gw 556 (558)
|.+.|++.. .+.|+...||.+++|
T Consensus 168 A~~aykKaL--eldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 168 AIEAYKKAL--ELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHhhh--ccCCCcHHHHHHHHH
Confidence 776666665 466666666655543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0012 Score=55.43 Aligned_cols=126 Identities=11% Similarity=0.009 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCH--HHHHH
Q 008633 164 KSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD---LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDA--ESLNV 238 (558)
Q Consensus 164 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~---~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~ 238 (558)
..|..++..+ ..++...+...++.+..... .+ ....-.+...+...|++++|...|+.+......++. .....
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 3455666665 37777777777777776532 12 223334556677778888888888887776522221 23444
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 239 VLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKE 292 (558)
Q Consensus 239 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (558)
|...+...|++++|+..++.... .+.....+....+.+.+.|++++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56667777777777777766432 223444566677777777777777777764
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00043 Score=53.14 Aligned_cols=75 Identities=19% Similarity=0.419 Sum_probs=39.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008633 344 ISNYISVGDFDECMKYYKGMSSYNC-EPNMDTYTRLISGLLKSR--------KVADALEVFEEMLDRGIVPSTGTITSFL 414 (558)
Q Consensus 344 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~ll 414 (558)
|.-+...+++.....+|+.++..|+ .|++.+|+.++.+.++.. +.-+.+.+|++|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 555555555555544431 2334455566666666666666666666
Q ss_pred HHHH
Q 008633 415 EPLC 418 (558)
Q Consensus 415 ~~~~ 418 (558)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.7e-05 Score=45.08 Aligned_cols=29 Identities=45% Similarity=0.714 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAEG 297 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 297 (558)
+||+++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00061 Score=52.32 Aligned_cols=74 Identities=20% Similarity=0.347 Sum_probs=38.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 008633 311 GLGRAGRIDDAIEVFDTMKEKGC-GPDTNAYNAVISNYISVG--------DFDECMKYYKGMSSYNCEPNMDTYTRLISG 381 (558)
Q Consensus 311 ~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 381 (558)
.+...+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33333444444444444444444 444444444444444332 233455566666666666666666666666
Q ss_pred HHh
Q 008633 382 LLK 384 (558)
Q Consensus 382 ~~~ 384 (558)
+.+
T Consensus 114 Llk 116 (120)
T PF08579_consen 114 LLK 116 (120)
T ss_pred HHH
Confidence 544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.5e-05 Score=45.18 Aligned_cols=30 Identities=20% Similarity=0.468 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGV 194 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~ 194 (558)
+||.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0091 Score=56.76 Aligned_cols=87 Identities=15% Similarity=0.060 Sum_probs=54.6
Q ss_pred HHhcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHhcC
Q 008633 417 LCSYGPPHAAMMMYKKARKV---GCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVI--AGLCNIG 491 (558)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li--~~~~~~g 491 (558)
..+.|.+..|.+.|.+.+.. +..++...|........+.|+.++|+.-.++....+ ...+...+. .++...+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHH
Confidence 34567777777777777653 345566667666667777778777777777766542 112222222 3344457
Q ss_pred CHhHHHHHHHHHHhC
Q 008633 492 QLENAVLVMEESLRK 506 (558)
Q Consensus 492 ~~~~A~~~~~~m~~~ 506 (558)
++++|.+-++++.+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777777777665
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00096 Score=50.79 Aligned_cols=94 Identities=19% Similarity=0.221 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008633 445 YKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLA 524 (558)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 524 (558)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445556667777888888887776643 3344567777777777888888888888777653 2334577777778888
Q ss_pred cCCHHHHHHHHHHHHH
Q 008633 525 SNKLESAYNLFRKIKI 540 (558)
Q Consensus 525 ~g~~~~A~~~~~~m~~ 540 (558)
.|++++|.+.+.+..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 8888888888777653
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.041 Score=50.62 Aligned_cols=176 Identities=13% Similarity=0.069 Sum_probs=103.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-HH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008633 343 VISNYISVGDFDECMKYYKGMSSYNCEPNM-DT---YTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLC 418 (558)
Q Consensus 343 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 418 (558)
....+.+.|++++|.+.|+++.... |+. .. .-.++.++.+.+++++|...+++..+........-+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 4445566778888888888777642 332 11 13455667777888888888887776532222233333333333
Q ss_pred h--c---------------CCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHH
Q 008633 419 S--Y---------------GPP---HAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGE 478 (558)
Q Consensus 419 ~--~---------------g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 478 (558)
. . .+. ..|...++.++ +.|-...-..+|...+..+.+. =..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~----la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDR----LAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHH----HHH
Confidence 1 1 111 12333333333 3333333345555444444321 001
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 479 IYEYVIAGLCNIGQLENAVLVMEESLRK--GFCPSRLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
.--.+...|.+.|.+..|+.-++.+++. +.+........++.+|.+.|..++|.+....+.
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1124566688999999999999999986 322336777788899999999999998877664
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0014 Score=49.78 Aligned_cols=54 Identities=13% Similarity=-0.012 Sum_probs=20.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 239 VLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKE 292 (558)
Q Consensus 239 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (558)
+..++...+++++|.+.|+......+.+..++..+...+...|++++|...+..
T Consensus 40 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 40 LAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333333333444444433333322222333333444444444444444444433
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0017 Score=56.47 Aligned_cols=102 Identities=16% Similarity=0.237 Sum_probs=62.2
Q ss_pred ChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008633 266 NVMTYNIVISGWSK-----LGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAY 340 (558)
Q Consensus 266 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 340 (558)
+..+|..+++.|.+ .|..+-....+..|.+-|+.-|..+|+.|++.+=+ |.+- |... +
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~-f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF-F 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH-H
Confidence 66677777777764 36677777777888888888888888888877654 2211 1111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 008633 341 NAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSR 386 (558)
Q Consensus 341 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 386 (558)
.++-.-| -.+-+-|++++++|...|+-||..++..+++.+.+.+
T Consensus 109 Q~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 109 QAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 1111111 1234556677777777777777777777777765554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0027 Score=51.09 Aligned_cols=99 Identities=8% Similarity=-0.057 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHH
Q 008633 166 YNVIVKALGRRKFFDFMCNVLSDMAKEGVN--PDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLK--FDAESLNVVLW 241 (558)
Q Consensus 166 ~~~li~~~~~~~~~~~a~~l~~~m~~~g~~--~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~ll~ 241 (558)
+......+.+.|++++|...|+.+...... .....+..+...+.+.|+++.|.+.++.+...... ....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444445555555555555555443210 01233444455555555555555555554432111 11233444444
Q ss_pred HHHhcCCHhHHHHHHHHhhcCCC
Q 008633 242 CLCQRLHVGAASSLFNSMKGKVL 264 (558)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~~~~ 264 (558)
++.+.|+.++|...++++....|
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCc
Confidence 44444455555554444444333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0035 Score=50.46 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=8.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhh
Q 008633 344 ISNYISVGDFDECMKYYKGMS 364 (558)
Q Consensus 344 i~~~~~~g~~~~A~~~~~~m~ 364 (558)
..++.+.|+.++|.+.++++.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHH
Confidence 333333344444444444333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0071 Score=61.97 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 477 GEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
...|..+.-.....|++++|...++++++.+ |+...|..+...+...|+.++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445444444444555555555555555442 45555555555555555555555555555533
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0023 Score=60.38 Aligned_cols=129 Identities=13% Similarity=0.032 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIR-AGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCL 243 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 243 (558)
+|-.+++..-+.+..+.|..+|.+..+.+ ..+...|......-.+ .++.+.|..+|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34445555555555555555555554332 1122222222222112 23444455555555443 233444555555555
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 244 CQRLHVGAASSLFNSMKGKVLFNV---MTYNIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
.+.++.+.|..+|++.....+++. ..|...+..=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555544433222 2444455544455555555555444444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0011 Score=57.61 Aligned_cols=89 Identities=20% Similarity=0.235 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008633 212 GQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLK 291 (558)
Q Consensus 212 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 291 (558)
|.++-....+..|.+.|+.-|..+|+.|++++=+ |.+- -..+|+.+-.+. -.+-+-|+++++
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~hy----------------p~Qq~c~i~lL~ 127 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMHY----------------PRQQECAIDLLE 127 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhccC----------------cHHHHHHHHHHH
Confidence 5666666677778888888888888888877654 2221 122333322221 135677899999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 008633 292 EIVAEGFSPDSLTFSFLIEGLGRAGRI 318 (558)
Q Consensus 292 ~m~~~g~~p~~~t~~~ll~~~~~~g~~ 318 (558)
+|...|+-||..|+..+++.+++.+..
T Consensus 128 qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 128 QMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 999999999999999999999887653
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.012 Score=55.66 Aligned_cols=143 Identities=13% Similarity=0.175 Sum_probs=67.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHc----CCCC--CHHHHHHHHHHH
Q 008633 380 SGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSY-GPPHAAMMMYKKARKV----GCKL--SLTAYKLLLRRL 452 (558)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~ 452 (558)
..|...|++..|-.++.++-+ .|... |+++.|++.|+++.+. + .+ -..++..+...+
T Consensus 102 ~~y~~~G~~~~aA~~~~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHH
Confidence 445555555555554444322 23333 5556666655554431 1 11 123444555666
Q ss_pred HcCCChhHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCCCC--HHHHHHHHHHH
Q 008633 453 SGFGKCGMLLDLWHEMQESGYPS-----DGE-IYEYVIAGLCNIGQLENAVLVMEESLRK--GFCPS--RLVYSKLSNKL 522 (558)
Q Consensus 453 ~~~g~~~~A~~~~~~m~~~~~~p-----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~l~~~~ 522 (558)
.+.|++++|.++|+++...-... +.. .|-..+-++...|+.-.|.+.+++.... ++..+ ......|+.+|
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 77777777777777665432211 111 2222333455567777777777776643 22222 34455555655
Q ss_pred Hh--cCCHHHHHHHHHHH
Q 008633 523 LA--SNKLESAYNLFRKI 538 (558)
Q Consensus 523 ~~--~g~~~~A~~~~~~m 538 (558)
-. ...+++|..-|+.+
T Consensus 246 ~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 246 EEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HTT-CCCHHHHCHHHTTS
T ss_pred HhCCHHHHHHHHHHHccc
Confidence 43 23455555544444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0026 Score=59.97 Aligned_cols=131 Identities=11% Similarity=0.021 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 008633 199 ETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC-LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGW 277 (558)
Q Consensus 199 ~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~-~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~ 277 (558)
.+|..+++..-+.+..+.|.++|.+..+.+. .+..+|...... |...++.+.|.++|+......+.+...|..-++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3577777777777778888888888875432 233334333333 22345566688888877766666777787778888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 278 SKLGQVVEMERVLKEIVAEGFSPDS---LTFSFLIEGLGRAGRIDDAIEVFDTMKEK 331 (558)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 331 (558)
.+.++.+.|..+|++.... +.++. ..|...+..-.+.|+++.+.++.+.+.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888877754 22222 36777777777777777777777766654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.18 Score=52.04 Aligned_cols=340 Identities=14% Similarity=0.075 Sum_probs=196.0
Q ss_pred HhcCChHHHHHHHHHHH--------HCCCCCCHHHHHH-----HHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 174 GRRKFFDFMCNVLSDMA--------KEGVNPDLETLSI-----VMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 174 ~~~~~~~~a~~l~~~m~--------~~g~~~~~~t~~~-----li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
.+..++++-..+.++.. +-|++.+..-|.. +|+.+...+.+..|+++-..+...-..- ..+|....
T Consensus 400 l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa 478 (829)
T KOG2280|consen 400 LRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWA 478 (829)
T ss_pred cccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHH
Confidence 34556666655555543 3467766665544 5777788899999999988776432222 45666666
Q ss_pred HHHHhcCC---HhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHH
Q 008633 241 WCLCQRLH---VGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFS----PDSLTFSFLIEGLG 313 (558)
Q Consensus 241 ~~~~~~~~---~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~ 313 (558)
.-+.+..+ -+.+..+-+++.... ....+|..+..-....|+.+-|..+++.=...+.. .+..-+...+.-+.
T Consensus 479 ~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai 557 (829)
T KOG2280|consen 479 RRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI 557 (829)
T ss_pred HHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence 66666532 233344444444432 35678888888888899999998887643322211 11222445556666
Q ss_pred hcCCHHHHHHHHHHHHHCC-----------CCCCHHHHHHHHH--------HHHhcCCHHHHHHHH--HHhh----hCCC
Q 008633 314 RAGRIDDAIEVFDTMKEKG-----------CGPDTNAYNAVIS--------NYISVGDFDECMKYY--KGMS----SYNC 368 (558)
Q Consensus 314 ~~g~~~~a~~~~~~m~~~g-----------~~p~~~~~~~li~--------~~~~~g~~~~A~~~~--~~m~----~~~~ 368 (558)
..|+.+-...++-.+...- .+.....|.-+++ .+...++-.++..-| +... ..|.
T Consensus 558 es~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r 637 (829)
T KOG2280|consen 558 ESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGR 637 (829)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhccc
Confidence 7777777666665554331 1111222222222 011111111111111 1100 0122
Q ss_pred CCCHHHHHHHHHHHHhcCCHH---HH-------HHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 008633 369 EPNMDTYTRLISGLLKSRKVA---DA-------LEVFEEMLD-RGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVG 437 (558)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~~~---~A-------~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 437 (558)
.|+. .....++.+..... +| +.+.+.+.. .|......+.+--+.-+...|+-.+|.++-.+.+
T Consensus 638 ~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk--- 711 (829)
T KOG2280|consen 638 IPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK--- 711 (829)
T ss_pred chhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC---
Confidence 2222 23334444443311 11 122222222 2333444455555556777888888877765543
Q ss_pred CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 008633 438 CKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSK 517 (558)
Q Consensus 438 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 517 (558)
-||...|-.-+.+++..+++++.+++-+.+.. +.-|...+.+|.+.|+.++|.+++-+.- | .. -
T Consensus 712 -ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~--~---l~----e 775 (829)
T KOG2280|consen 712 -IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVG--G---LQ----E 775 (829)
T ss_pred -CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccC--C---hH----H
Confidence 47788888889999999999987777665542 3457778999999999999999987542 2 11 5
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 008633 518 LSNKLLASNKLESAYNLFRK 537 (558)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~ 537 (558)
.+.+|.+.|++.+|.++--+
T Consensus 776 kv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 776 KVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHHhccHHHHHHHHHH
Confidence 67889999999999876543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.11 Score=49.69 Aligned_cols=105 Identities=15% Similarity=0.092 Sum_probs=54.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 008633 376 TRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGF 455 (558)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 455 (558)
+..|.-+...|+...|.++-.+. -.|+...|..-+.+++..+++++-.++-.. +-++.-|..++.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 33344445555555555554433 135555566666666666666555443221 12234555566666666
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 008633 456 GKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVM 500 (558)
Q Consensus 456 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 500 (558)
|+..+|..+...+ + +..-+..|.+.|++.+|.+..
T Consensus 251 ~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 251 GNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHH
Confidence 6666665555541 1 233455556666666665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0029 Score=62.00 Aligned_cols=101 Identities=14% Similarity=0.079 Sum_probs=81.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 414 LEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQL 493 (558)
Q Consensus 414 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 493 (558)
...+...|+++.|+..|+++++.. +-+...|..+..+|.+.|++++|+..++++.+.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 345667899999999999998865 4467788888889999999999999999998864 44677888889999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 494 ENAVLVMEESLRKGFCPSRLVYSKL 518 (558)
Q Consensus 494 ~~A~~~~~~m~~~g~~p~~~~~~~l 518 (558)
++|+..|+++++. .|+......+
T Consensus 87 ~eA~~~~~~al~l--~P~~~~~~~~ 109 (356)
T PLN03088 87 QTAKAALEKGASL--APGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHH
Confidence 9999999999875 4654333333
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.11 Score=49.35 Aligned_cols=288 Identities=13% Similarity=0.071 Sum_probs=179.3
Q ss_pred cCCHhHHHHHHHHhhcCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHH
Q 008633 246 RLHVGAASSLFNSMKGKVLFNVMTYNIVISG--WSKLGQVVEMERVLKEIVAEGFSPDSL--TFSFLIEGLGRAGRIDDA 321 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a 321 (558)
.|+-..|.++-.+..+.+..|....-.++.+ -.-.|+++.|.+-|+.|... |... -...|.-...+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 4566666666555543333344444444433 33468888888888888752 2221 122333333467888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHHH--HHHHHHHHHh---cCCHHHHHHHH
Q 008633 322 IEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYN-CEPNMDT--YTRLISGLLK---SRKVADALEVF 395 (558)
Q Consensus 322 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~--~~~li~~~~~---~g~~~~A~~~~ 395 (558)
...-+..-+.-.. -...+...+...|..|+++.|+++.+.-.+.. +.+++.- -..|+.+-.. .-+...|...-
T Consensus 174 r~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 8877776655333 34567788888899999999999988765533 3444432 2233333221 23455566555
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH-CCC
Q 008633 396 EEMLDRGIVPSTG-TITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQE-SGY 473 (558)
Q Consensus 396 ~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~ 473 (558)
.+..+ +.||.. .-.....++.+.|+..++-.+++.+.+....|+. +. .|.+..--+.++.-+++... ..+
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~----lY~~ar~gdta~dRlkRa~~L~sl 324 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL----LYVRARSGDTALDRLKRAKKLESL 324 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH----HHHHhcCCCcHHHHHHHHHHHHhc
Confidence 55444 345532 2223446788899999999999999887655543 22 23333333344444443332 112
Q ss_pred CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCchh
Q 008633 474 PS-DGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLA-SNKLESAYNLFRKIKIARQNDYA 547 (558)
Q Consensus 474 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~~~~ 547 (558)
+| |....-.+..+....|++..|..--+...+. .|....|..|.+.-.. .|+-.++.+.+.+..+....|.|
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 33 5667778888888999999998888777644 6888999888888765 49999999999888876666654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0045 Score=51.40 Aligned_cols=93 Identities=6% Similarity=-0.072 Sum_probs=65.7
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008633 447 LLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASN 526 (558)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 526 (558)
.+...+...|++++|.++|+-+...+ +-+..-|-.|.-++-..|++++|+..|..+.... +-|+..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 34444667788888888887777654 3355566667777777788888888888777664 244677777888888888
Q ss_pred CHHHHHHHHHHHHHh
Q 008633 527 KLESAYNLFRKIKIA 541 (558)
Q Consensus 527 ~~~~A~~~~~~m~~~ 541 (558)
+.+.|.+.|+.....
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888887766543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00027 Score=53.04 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=51.8
Q ss_pred CCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 455 FGKCGMLLDLWHEMQESGY-PSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYN 533 (558)
Q Consensus 455 ~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 533 (558)
.|+++.|+.+++++.+... .++...+..+..++.+.|++++|+.++++ .+.+ ..+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4677778888877776432 12344555577788888888888888877 3222 1223444456777888888888888
Q ss_pred HHHH
Q 008633 534 LFRK 537 (558)
Q Consensus 534 ~~~~ 537 (558)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0028 Score=54.82 Aligned_cols=81 Identities=11% Similarity=-0.139 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHH
Q 008633 198 LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKF--DAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVIS 275 (558)
Q Consensus 198 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~ 275 (558)
...|..+...+...|++++|+..+++.......+ ...++..+..++...|+.++|...+++.....+....+++.+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3445555556666667777777666665442221 12355566666666666666666666655444444445555555
Q ss_pred HHH
Q 008633 276 GWS 278 (558)
Q Consensus 276 ~~~ 278 (558)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.01 Score=51.60 Aligned_cols=86 Identities=10% Similarity=-0.081 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 008633 200 TLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD--AESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGW 277 (558)
Q Consensus 200 t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~ 277 (558)
.+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+++.....+.+...+..+...+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344444444455555555555555443321111 234444444455555555555555444433333444444444455
Q ss_pred HhcCCHHH
Q 008633 278 SKLGQVVE 285 (558)
Q Consensus 278 ~~~g~~~~ 285 (558)
...|+...
T Consensus 117 ~~~g~~~~ 124 (172)
T PRK02603 117 HKRGEKAE 124 (172)
T ss_pred HHcCChHh
Confidence 44444333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0056 Score=59.97 Aligned_cols=92 Identities=7% Similarity=-0.022 Sum_probs=66.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008633 273 VISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGD 352 (558)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 352 (558)
-...+...|++++|+..|++.++.. +-+...|..+..+|.+.|++++|...++.+.+.... +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 3455666778888888888877754 235566777777777888888888888887776433 56677777778888888
Q ss_pred HHHHHHHHHHhhhC
Q 008633 353 FDECMKYYKGMSSY 366 (558)
Q Consensus 353 ~~~A~~~~~~m~~~ 366 (558)
+++|...|++..+.
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888877765
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.011 Score=51.33 Aligned_cols=90 Identities=18% Similarity=0.107 Sum_probs=49.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD--SLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAV 343 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 343 (558)
....+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++..+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 344455566666666666666666666654322221 244555566666666666666666666554322 34455555
Q ss_pred HHHHHhcCCHHHH
Q 008633 344 ISNYISVGDFDEC 356 (558)
Q Consensus 344 i~~~~~~g~~~~A 356 (558)
..+|...|+...+
T Consensus 113 g~~~~~~g~~~~a 125 (172)
T PRK02603 113 AVIYHKRGEKAEE 125 (172)
T ss_pred HHHHHHcCChHhH
Confidence 5555555554333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.054 Score=49.80 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=25.6
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008633 244 CQRLHVGAASSLFNSMKGKVLFNVMTY---NIVISGWSKLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (558)
.+.|++++|.+.|+.+....|-+.... -.++.++.+.+++++|...+++..+.
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344555555555555544333332222 23344555555555555555555543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00056 Score=51.28 Aligned_cols=14 Identities=29% Similarity=0.252 Sum_probs=4.8
Q ss_pred HHHhcCCHHHHHHH
Q 008633 276 GWSKLGQVVEMERV 289 (558)
Q Consensus 276 ~~~~~g~~~~A~~~ 289 (558)
++.+.|++++|+++
T Consensus 67 ~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 67 CLLKLGKYEEAIKA 80 (84)
T ss_dssp HHHHTT-HHHHHHH
T ss_pred HHHHhCCHHHHHHH
Confidence 33333333333333
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.076 Score=45.01 Aligned_cols=128 Identities=15% Similarity=0.103 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHH
Q 008633 369 EPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGC-KLSLTAYKL 447 (558)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ 447 (558)
.|++..--.|..++...|+..+|...|.+....-..-|....-.+.++....+++..|...++++.+.+. .-++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555555556666666666666666666655433344445555555555555666666666655554320 011222333
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 008633 448 LLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVL 498 (558)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 498 (558)
+.+.|...|+...|..-|+..... -|+...-......+.++|+.++|..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 444555555555555555555543 3333333333333445555444443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.013 Score=48.66 Aligned_cols=91 Identities=9% Similarity=0.032 Sum_probs=52.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 308 LIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRK 387 (558)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 387 (558)
+...+...|++++|.++|+.+....+. +..-|-.|.-++-..|++++|+..|....... +-|...+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 334445566666666666666555443 44455556666666666666666666665544 3445555566666666666
Q ss_pred HHHHHHHHHHHHH
Q 008633 388 VADALEVFEEMLD 400 (558)
Q Consensus 388 ~~~A~~~~~~m~~ 400 (558)
.+.|.+.|+..+.
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.094 Score=52.90 Aligned_cols=104 Identities=18% Similarity=0.223 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHH
Q 008633 196 PDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVIS 275 (558)
Q Consensus 196 ~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~ 275 (558)
+.+..+.+-+-.|...|.+++|.++-. +-.....|.-|..-....-+++-|.+.|.+.+..
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iac------lgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl------------- 614 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIAC------LGVTDTDWRELAMEALEALDFETARKAYIRVRDL------------- 614 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccc------cceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc-------------
Confidence 334445555566677777777765421 1112223333433333333444444444333321
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 276 GWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDT 327 (558)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 327 (558)
.+-+...-+++|++.|-.|+... +...++-.|++.+|-++|.+
T Consensus 615 ------~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 615 ------RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred ------HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 23344445677777787777654 33455667777777777754
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.011 Score=51.24 Aligned_cols=62 Identities=13% Similarity=0.106 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGP--DTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 304 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
.|..+...+...|++++|...++........+ ...++..+..+|...|++++|++.+++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444445555555555555554432221 123455555556666666666666655554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.13 Score=43.74 Aligned_cols=131 Identities=14% Similarity=0.121 Sum_probs=76.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHH
Q 008633 333 CGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRG---IVPSTGT 409 (558)
Q Consensus 333 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~ 409 (558)
..|++..--.|..++.+.|+..+|...|++...--..-|....-.+.++....+++.+|...++++-+.. -.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~-- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG-- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--
Confidence 3455555556667777777777777777776644344556666666666666777777777777666542 23333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 008633 410 ITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHE 467 (558)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 467 (558)
.-.+.+.+...|.+.+|+..|+..... .|+...-......+.++|+.+++..-+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 234555666677777777777766653 23333322233345566666655443333
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.051 Score=51.45 Aligned_cols=113 Identities=19% Similarity=0.294 Sum_probs=57.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHH
Q 008633 274 ISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRA-GRIDDAIEVFDTMKEK----GCG-PDTNAYNAVISNY 347 (558)
Q Consensus 274 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~ 347 (558)
+..|...|++..|-+.+.++ ...|-.. |++++|.+.|++..+. |-. --..++..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 34455555555555444443 2334444 6666666666665432 210 0123445566777
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCC-----CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 348 ISVGDFDECMKYYKGMSSYNCEP-----NMD-TYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 348 ~~~g~~~~A~~~~~~m~~~~~~p-----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
.+.|++++|.++|+++....... ++. .|-..+-++...|+...|.+.+++....
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777777777766532211 121 2223334555667777777777776543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.02 Score=45.74 Aligned_cols=89 Identities=18% Similarity=0.034 Sum_probs=43.3
Q ss_pred HHHHHhCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCC---ChhhHHHHHHHHHhc
Q 008633 206 DSFIRAGQVYKAIQMLGRLEDFGLKFD--AESLNVVLWCLCQRLHVGAASSLFNSMKGKVLF---NVMTYNIVISGWSKL 280 (558)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~---~~~~~~~li~~~~~~ 280 (558)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+|++.....|. +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 334445556666666666555554432 223334444555555555555555555433222 222223333445555
Q ss_pred CCHHHHHHHHHHHH
Q 008633 281 GQVVEMERVLKEIV 294 (558)
Q Consensus 281 g~~~~A~~~~~~m~ 294 (558)
|+.++|+..+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666665555443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.042 Score=56.42 Aligned_cols=64 Identities=11% Similarity=0.039 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 336 DTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
+...|..+.-.+...|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455555555555566666666666666553 45666666666666666666666666666553
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0079 Score=54.91 Aligned_cols=100 Identities=19% Similarity=0.306 Sum_probs=73.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 312 LGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADA 391 (558)
Q Consensus 312 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 391 (558)
+.+.+++.+|+..|.+.++.... |.+.|..-..+|++.|.++.|++=.+..+..+ +-...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 45677888888888888877544 77777777888888888888888877777643 23356788888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHH
Q 008633 392 LEVFEEMLDRGIVPSTGTITSFLE 415 (558)
Q Consensus 392 ~~~~~~m~~~~~~p~~~~~~~ll~ 415 (558)
++.|++.++ +.|+..+|..=++
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHH
Confidence 888887766 4677777655554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.14 Score=45.78 Aligned_cols=170 Identities=12% Similarity=0.168 Sum_probs=90.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 343 VISNYISVGDFDECMKYYKGMSSYNC--EPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSY 420 (558)
Q Consensus 343 li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 420 (558)
....+...|++++|.+.|+.+....- +--....-.++.++.+.|++++|...+++..+.-......-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 34445566777777777777665310 1112334455666677777777777777766542111111222222222211
Q ss_pred C-------------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008633 421 G-------------PPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGL 487 (558)
Q Consensus 421 g-------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 487 (558)
. ...+|. ..+..++..|-......+|...+..+.+. =...--.+...|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~---------------~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAI---------------EEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHH---------------HHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHH---------------HHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 1 111222 23444555555555666666555555431 001122356678
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 008633 488 CNIGQLENAVLVMEESLRKGFCPS----RLVYSKLSNKLLASNKLESAYN 533 (558)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~ 533 (558)
.+.|.+..|..-++.+++. -|+ ......++.+|.+.|..+.|..
T Consensus 152 ~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 8999999999999999886 354 4566778889999998885543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0023 Score=45.59 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=22.0
Q ss_pred cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 246 RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
.|++++|.++|+++....|-+...+..++.+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444433333444444444444444444444444444443
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0043 Score=44.32 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 008633 476 DGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASN-KLESAYNLFRKIKI 540 (558)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 540 (558)
+..+|..+...+...|++++|+..|++.++.. +-+...|..+..+|.+.| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45677778888888888888888888888763 223677888888888888 68888888877764
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0042 Score=44.19 Aligned_cols=52 Identities=19% Similarity=0.381 Sum_probs=24.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 008633 314 RAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSY 366 (558)
Q Consensus 314 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 366 (558)
..|++++|.++|+.+.+.... +...+..+..+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555555555555444322 4444444555555555555555555555443
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.011 Score=56.02 Aligned_cols=131 Identities=11% Similarity=-0.007 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHH----HCCC-CCCHHH
Q 008633 410 ITSFLEPLCSYGPPHAAMMMYKKAR----KVGCK-LSLTAYKLLLRRLSGFGKCGMLLDLWHEMQ----ESGY-PSDGEI 479 (558)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~-~p~~~~ 479 (558)
|..+...|.-.|+++.|+...+.-. +.|-+ .....+..+..++.-.|+++.|.+.|+... +.|- .....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4444444555566666665554321 22211 123455566666666677777766665432 2221 112334
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 480 YEYVIAGLCNIGQLENAVLVMEESLR----K-GFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~----~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
...|...|.-...++.|+.++.+=+. . ...-....+-+|.++|...|..++|..+.+.-.+
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45566666666666777666554321 1 1112245666677777777777777766665443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.062 Score=42.99 Aligned_cols=90 Identities=17% Similarity=0.180 Sum_probs=41.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhc
Q 008633 275 SGWSKLGQVVEMERVLKEIVAEGFSPD--SLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCG--PDTNAYNAVISNYISV 350 (558)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~ 350 (558)
.++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..++++....... -+......+.-++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 334445555555555555555554433 123334444555555555555555555443111 0111112222344455
Q ss_pred CCHHHHHHHHHHhh
Q 008633 351 GDFDECMKYYKGMS 364 (558)
Q Consensus 351 g~~~~A~~~~~~m~ 364 (558)
|+.++|++.+-...
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555554433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.025 Score=52.45 Aligned_cols=95 Identities=8% Similarity=0.097 Sum_probs=56.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC----HHHH
Q 008633 444 AYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDG----EIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS----RLVY 515 (558)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~ 515 (558)
.|...+..+.+.|++++|...|+.+.+. .|+. ..+..+...|...|++++|...|+.+++. .|+ ...+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl 220 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHH
Confidence 3444444444556667777666666654 2322 35556666667777777777777776654 122 4455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 008633 516 SKLSNKLLASNKLESAYNLFRKIKIAR 542 (558)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 542 (558)
..++..+...|+.++|.+.++++.+..
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 555666666777777777777666543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0055 Score=43.17 Aligned_cols=55 Identities=13% Similarity=-0.002 Sum_probs=32.3
Q ss_pred HHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 241 WCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
..+.+.|++++|.+.|+++....|-+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455556666666666666555555556666666666666666666666666554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.033 Score=49.78 Aligned_cols=129 Identities=14% Similarity=0.105 Sum_probs=60.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----H
Q 008633 167 NVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL-----W 241 (558)
Q Consensus 167 ~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll-----~ 241 (558)
+.++..+.-.|.+.-..+++.+..+...+.++.....+.+.-.+.|+.+.|...|++..+..-..|....+.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 44444555555555555555555554434444455555555555555555555555544332222222222222 2
Q ss_pred HHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 242 CLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
.|.-.+++..|...|.++....+.|+..-|.-.-+..-.|+...|++.++.|++
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 233344444555555544444444444444444444444555555555555554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.017 Score=54.93 Aligned_cols=262 Identities=15% Similarity=0.072 Sum_probs=157.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHH
Q 008633 172 ALGRRKFFDFMCNVLSDMAKEGVNPDLE----TLSIVMDSFIRAGQVYKAIQMLGRLE----DFGLK-FDAESLNVVLWC 242 (558)
Q Consensus 172 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~----t~~~li~~~~~~g~~~~A~~~~~~~~----~~g~~-~~~~~~~~ll~~ 242 (558)
-+|+.|+....+.+|+...+.|.. |.. +|..|.++|.-.+++++|++.+..=. ..|-+ -.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 478889999999999999888743 444 45666677777888888888764311 11100 012223334444
Q ss_pred HHhcCCHhHHHHHHHH-h------hcCCCCChhhHHHHHHHHHhcCC--------------------HHHHHHHHHHHHH
Q 008633 243 LCQRLHVGAASSLFNS-M------KGKVLFNVMTYNIVISGWSKLGQ--------------------VVEMERVLKEIVA 295 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~-m------~~~~~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~ 295 (558)
+--.|.+++|...-.+ + -.++. ....+..+...|...|+ ++.|.++|.+-.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~-e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVL-ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHh-hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 4445666665543221 1 11111 22334445555554432 3344455543222
Q ss_pred ----cCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 296 ----EGFS-PDSLTFSFLIEGLGRAGRIDDAIEVFDTMK----EKGCG-PDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 296 ----~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~----~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
.|-. .-...|..|-+.|.-.|+++.|+..++.-. +.|-. .....+..+.+++.-.|+++.|.+.|+....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 1100 112346666666777889999988776533 22321 1234678888999999999999998886532
Q ss_pred ----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008633 366 ----YN-CEPNMDTYTRLISGLLKSRKVADALEVFEEMLD----R-GIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARK 435 (558)
Q Consensus 366 ----~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (558)
.| -.....+.-+|...|.-..++++|+..+.+-.. . ...-....+.++..++...|.-++|+.+.+...+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 22 123445666788888888899999888765332 1 1223456788888889889988888877765544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.073 Score=49.01 Aligned_cols=103 Identities=13% Similarity=0.059 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHhCCCCCCHHHH
Q 008633 439 KLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIG---QLENAVLVMEESLRKGFCPSRLVY 515 (558)
Q Consensus 439 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~ 515 (558)
+-|...|-.|...|...|+++.|..-|.+..+.. ++|...+..+..++.... ...++..+|++++... +-|....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 3455556666666666666666666666655532 334455555555443321 2445566666666542 2234555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 008633 516 SKLSNKLLASNKLESAYNLFRKIKIARQ 543 (558)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 543 (558)
..|...+...|++.+|...|+.|.+...
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 5555566666666666666666655433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0059 Score=43.00 Aligned_cols=54 Identities=17% Similarity=0.361 Sum_probs=30.5
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 484 IAGLCNIGQLENAVLVMEESLRKGFCP-SRLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 484 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
...+...|++++|...|+++++.. | +...+..+..++...|++++|...++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555666666666666666542 3 34555556666666666666666666554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.027 Score=45.51 Aligned_cols=102 Identities=10% Similarity=0.049 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008633 406 STGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIA 485 (558)
Q Consensus 406 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 485 (558)
|..++..++.++++.|+.+....+++..-.. ..+.. ...+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI--~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGI--DVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCC--CCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 3456666777777777777666666544321 11100 00000 1123457888999999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC
Q 008633 486 GLCNIGQLENAVLVMEESLRK-GFCPSRLVYSKLSNKLLASNK 527 (558)
Q Consensus 486 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~ 527 (558)
+|+..|++..|+++++...+. +++.+..+|..|++-....-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999988765 777778899988887654433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.11 Score=47.87 Aligned_cols=116 Identities=12% Similarity=0.096 Sum_probs=78.8
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCH
Q 008633 261 GKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRA---GRIDDAIEVFDTMKEKGCGPDT 337 (558)
Q Consensus 261 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---g~~~~a~~~~~~m~~~g~~p~~ 337 (558)
...|-|...|-.|...|...|+++.|..-|.+..+.- .++...+..+..++... ....++.++|+++.+.... |+
T Consensus 150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~i 227 (287)
T COG4235 150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NI 227 (287)
T ss_pred HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cH
Confidence 3466688888888888888888888888888877642 23444555555444332 2445678888888777544 66
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 008633 338 NAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLIS 380 (558)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 380 (558)
.+...|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 677777778888888888888888888763 33344555544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.24 Score=44.19 Aligned_cols=58 Identities=7% Similarity=0.043 Sum_probs=29.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 008633 169 IVKALGRRKFFDFMCNVLSDMAKEGV--NPDLETLSIVMDSFIRAGQVYKAIQMLGRLED 226 (558)
Q Consensus 169 li~~~~~~~~~~~a~~l~~~m~~~g~--~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~ 226 (558)
....+.+.|++.+|...|+.+..... +--....-.++.++-+.|+++.|...+++..+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444556666666666666655421 11233444555566666666666666666554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.77 Score=44.02 Aligned_cols=109 Identities=14% Similarity=0.099 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008633 409 TITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLC 488 (558)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 488 (558)
+.+.-|.-|...|+...|.++-.+. . .|+..-|-..+.+|+..++|++..++-.. . -.+.-|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 4455566677788888887765443 2 47888999999999999999987766432 1 13367999999999
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 489 NIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRK 537 (558)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (558)
+.|+..+|..+..+ + ++ ..-+..|.+.|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k-----~-~~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPK-----I-PD----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHh-----C-Ch----HHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999886 2 22 4466888999999999776433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0095 Score=42.49 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAG-RIDDAIEVFDTM 328 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m 328 (558)
+|..+...+...|++++|+..|++..+.. +-+...|..+..++.+.| ++++|.+.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 33444444444444444444444443332 112233333333444444 344444444433
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.85 Score=43.96 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=30.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008633 172 ALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLE 225 (558)
Q Consensus 172 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 225 (558)
.+-+..++.+|+..+....+.+ +-+..-|..-...+...|++++|.--.+.-.
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~ 110 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSV 110 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhhe
Confidence 3445556666777776666654 2245555555556666677776665554433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.87 Score=43.55 Aligned_cols=307 Identities=14% Similarity=0.056 Sum_probs=171.1
Q ss_pred chHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHhCCHHHH
Q 008633 142 SGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALG--RRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDS--FIRAGQVYKA 217 (558)
Q Consensus 142 ~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~--~~~~g~~~~A 217 (558)
.+..+.++|+-..++. .|..|-.++. -.|+-..|.++-.+-.+. +.-|...+..++.+ -.-.|+.+.|
T Consensus 68 sP~t~~Ryfr~rKRdr-------gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~A 139 (531)
T COG3898 68 SPYTARRYFRERKRDR-------GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDA 139 (531)
T ss_pred CcHHHHHHHHHHHhhh-------HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHH
Confidence 3456666776655554 3666666664 456777777766655433 34455555555544 3456999999
Q ss_pred HHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 218 IQMLGRLEDFGLKFDAESLN----VVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEI 293 (558)
Q Consensus 218 ~~~~~~~~~~g~~~~~~~~~----~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 293 (558)
.+-|+.|.. |+++-. .|.-.--+.|..+.|.++-+...+.-+.-...+...+...|..|+++.|+++++.-
T Consensus 140 r~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 140 RKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 999999986 333322 23233345788888888888887766667788889999999999999999999877
Q ss_pred HHc-CCCCCHHH--HHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 008633 294 VAE-GFSPDSLT--FSFLIEGLGR---AGRIDDAIEVFDTMKEKGCGPDTN-AYNAVISNYISVGDFDECMKYYKGMSSY 366 (558)
Q Consensus 294 ~~~-g~~p~~~t--~~~ll~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 366 (558)
+.. -+.+++.- -..|+.+-.. .-+...|...-.+..+ +.||.. .-..-..++.+.|++.++-.+++.+-+.
T Consensus 215 ~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 215 RAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 654 23444422 1222222111 1233334443333332 233322 1222346677777777777777777665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 008633 367 NCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR-GIVPST-GTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTA 444 (558)
Q Consensus 367 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 444 (558)
. |....+. +..+.+.| +.+..-++...+. .++|+. ...-.+..+-...|++..|..--+...+ ..|....
T Consensus 293 e--PHP~ia~--lY~~ar~g--dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~ 364 (531)
T COG3898 293 E--PHPDIAL--LYVRARSG--DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESA 364 (531)
T ss_pred C--CChHHHH--HHHHhcCC--CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhH
Confidence 3 3333222 12223333 3333333333221 233432 3344455555556666655544444333 2455555
Q ss_pred HHHHHHHHHcC-CChhHHHHHHHHHHHC
Q 008633 445 YKLLLRRLSGF-GKCGMLLDLWHEMQES 471 (558)
Q Consensus 445 ~~~li~~~~~~-g~~~~A~~~~~~m~~~ 471 (558)
|..|.+.-... |+-+++...+.+....
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 65555544333 6666666666665543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.69 Score=41.74 Aligned_cols=131 Identities=15% Similarity=0.073 Sum_probs=73.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-----HHHH
Q 008633 270 YNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAY-----NAVI 344 (558)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-----~~li 344 (558)
.+.++..+.-.|.+.-...++.+..+...+.+......+++.-.+.|+.+.|...|+..++..-..|..+. ....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34555555556666666666666666554555666666666666677777777777655543222222222 2223
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 345 SNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 345 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
..|.-.+++..|...|+++...+ ..|...-|.-.-+..-.|+..+|++.++.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455566666666666666543 334444444333444456667777777776664
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.017 Score=41.73 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=27.6
Q ss_pred HHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 451 RLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 451 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
.|.+.+++++|.++++.+...+ +.+...|.....++.+.|++++|...+++..+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555555555555442 223444444555555555555555555555543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.35 E-value=1.1 Score=43.64 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 475 SDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 475 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
.|...+.+++.++.-.|+.++|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 45556677888888899999999999999866
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.02 Score=48.10 Aligned_cols=57 Identities=14% Similarity=0.123 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 238 VVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIV 294 (558)
Q Consensus 238 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (558)
.++..+...|+++.|..+.+.+....|.|...|..+|.+|...|+..+|.+.|+++.
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344444455555555555555555455555555555555555555555555555543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.022 Score=41.82 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 478 EIYEYVIAGLCNIGQLENAVLVMEESLRK--GFC---PS-RLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
.+|+.+...|...|++++|+..++++++. ... |+ ..++..+..+|...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36677777777778888887777777643 111 22 45677777778888888888888777653
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.27 E-value=1.3 Score=43.37 Aligned_cols=217 Identities=15% Similarity=0.202 Sum_probs=118.4
Q ss_pred CHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH-------HHHHHHhc
Q 008633 317 RIDDAIEVFDTMKEKGCGP----DTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTR-------LISGLLKS 385 (558)
Q Consensus 317 ~~~~a~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-------li~~~~~~ 385 (558)
+.+++..+-+.+....+.+ -+.++..++....+.++...|.+.+.-+.-. .|+...-.- +-+..|.-
T Consensus 274 ~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~D 351 (549)
T PF07079_consen 274 DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCED 351 (549)
T ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcc
Confidence 4455555544444332211 1245566666667777777777777666543 344432211 22222211
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHH----HHHH
Q 008633 386 ----RKVADALEVFEEMLDRGIVPSTGTITSFLEP---LCSYGP-PHAAMMMYKKARKVGCKLSLTAYKLLL----RRLS 453 (558)
Q Consensus 386 ----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~---~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~ 453 (558)
-+..+-+.++++....++.. ......++.+ +-+.|. -++|+++++.+.+.. .-|...-|.+. ..|.
T Consensus 352 D~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~ 429 (549)
T PF07079_consen 352 DESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYK 429 (549)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHH
Confidence 12233344444444433211 1122222222 223344 677888888777642 22333322221 2222
Q ss_pred cC---CChhHHHHHHHHHHHCCCCCCH----HHHHHHHHH--HHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008633 454 GF---GKCGMLLDLWHEMQESGYPSDG----EIYEYVIAG--LCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLA 524 (558)
Q Consensus 454 ~~---g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 524 (558)
.+ ..+.....+-+-+.+.|++|-. ..-|.+.++ +..+|++.++.-.-.-+. .+.|++.+|..++-++..
T Consensus 430 qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e 507 (549)
T PF07079_consen 430 QALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLME 507 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHH
Confidence 22 2334444444555677877643 344555544 557899999887766555 467999999999999999
Q ss_pred cCCHHHHHHHHHHHH
Q 008633 525 SNKLESAYNLFRKIK 539 (558)
Q Consensus 525 ~g~~~~A~~~~~~m~ 539 (558)
..++++|..++.++.
T Consensus 508 ~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 508 NKRYQEAWEYLQKLP 522 (549)
T ss_pred HhhHHHHHHHHHhCC
Confidence 999999999998775
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.046 Score=45.93 Aligned_cols=71 Identities=27% Similarity=0.284 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh-----CCCCCCHHHH
Q 008633 444 AYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLR-----KGFCPSRLVY 515 (558)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 515 (558)
+...++..+...|++++|..+++.+.... +-|...|..+|.+|...|+..+|.++|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44556666777788888888888877654 55667888888888888888888888877653 3777776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.42 Score=48.49 Aligned_cols=213 Identities=15% Similarity=0.163 Sum_probs=124.9
Q ss_pred HHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008633 166 YNVIVKALGRRK--FFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCL 243 (558)
Q Consensus 166 ~~~li~~~~~~~--~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~ 243 (558)
++.-=++|.+-+ .+-+.+.-+++|+++|-.|+... +...|+-.|++.+|-++|.+ .|.+ |..+.+|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmy 668 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMY 668 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHH
Confidence 344444554433 34455666788888888788654 34556677888888888765 3322 2233444
Q ss_pred HhcCCHhHHHHHHHHhh---------cC--CCCChhhHHHHHHHHHhcCCHHHHHHHHH------HHHHcCCCC---CHH
Q 008633 244 CQRLHVGAASSLFNSMK---------GK--VLFNVMTYNIVISGWSKLGQVVEMERVLK------EIVAEGFSP---DSL 303 (558)
Q Consensus 244 ~~~~~~~~A~~~~~~m~---------~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~------~m~~~g~~p---~~~ 303 (558)
.....++.|.+++..-. .+ ...|+.--.+....+...|+.++|..+.- -+.+-+.+. +..
T Consensus 669 TDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere 748 (1081)
T KOG1538|consen 669 TDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAERE 748 (1081)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhh
Confidence 44444444444432110 00 00011111234555666777777765432 122222222 334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH---------
Q 008633 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDT--------- 374 (558)
Q Consensus 304 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--------- 374 (558)
+...+...+.+...+.-|-++|..|-.. ..++......++|++|..+-+...+. .||+..
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 5555555556667777888888877533 45778888999999999999887764 444421
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 375 --YTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 375 --~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
|.-.-.+|.++|+-.+|..+++++...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 233446788889999999999887654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.036 Score=39.98 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=46.4
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchh
Q 008633 485 AGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYA 547 (558)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 547 (558)
..|.+.+++++|.+++++++..+ +.+...+.....++.+.|++++|.+.+++..+.......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 45778888888888888888764 334677777888888888888888888888765554433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.12 Score=47.97 Aligned_cols=15 Identities=20% Similarity=0.363 Sum_probs=5.8
Q ss_pred hcCCHHHHHHHHHHh
Q 008633 349 SVGDFDECMKYYKGM 363 (558)
Q Consensus 349 ~~g~~~~A~~~~~~m 363 (558)
..|+.++|.++|+++
T Consensus 229 ~~g~~~~A~~~~~~v 243 (263)
T PRK10803 229 DKGDTAKAKAVYQQV 243 (263)
T ss_pred HcCCHHHHHHHHHHH
Confidence 333333333333333
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.97 E-value=1.2 Score=46.30 Aligned_cols=318 Identities=8% Similarity=0.023 Sum_probs=144.7
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 008633 144 EAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKF--FDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQML 221 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~ 221 (558)
..|...-.|+....+. ....|......+.+..+ -+++.+.+++=...-.. +-..|..+.+.....|+.+.|..++
T Consensus 454 ~vaIQva~~l~~p~~~--~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~-~~iSy~~iA~~Ay~~GR~~LA~kLl 530 (829)
T KOG2280|consen 454 SVAIQVAKLLNLPESQ--GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT-PGISYAAIARRAYQEGRFELARKLL 530 (829)
T ss_pred HHHHHHHHHhCCcccc--ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC-CceeHHHHHHHHHhcCcHHHHHHHH
Confidence 3455566665433221 14556666666666532 22333333332222233 4467788888777899999999888
Q ss_pred HHHHhCCCC----CCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008633 222 GRLEDFGLK----FDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEG 297 (558)
Q Consensus 222 ~~~~~~g~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 297 (558)
+.=...+.. .+..-+..-+.-..+.|+.+-...++-.+..+. +...+...+ .+.-.|..+|.+..+..
T Consensus 531 e~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~--~~s~l~~~l------~~~p~a~~lY~~~~r~~ 602 (829)
T KOG2280|consen 531 ELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL--NRSSLFMTL------RNQPLALSLYRQFMRHQ 602 (829)
T ss_pred hcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH--HHHHHHHHH------HhchhhhHHHHHHHHhh
Confidence 654333211 122233444555566677766666665554320 111111111 23344445555444321
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHH--H----HHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHH
Q 008633 298 FSPDSLTFSFLIEGLGRAGRIDDAIEVFD--T----MKEKGCGPDTNAYNAVISNYISVGD----------FDECMKYYK 361 (558)
Q Consensus 298 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~--~----m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~ 361 (558)
|..+ +- .+.+.++-.++..-|. . -...|..|+. ....+.+.+... ..+-+++.+
T Consensus 603 ---~~~~---l~-d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~ 672 (829)
T KOG2280|consen 603 ---DRAT---LY-DFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQR 672 (829)
T ss_pred ---chhh---hh-hhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 1111 01 1111111111111110 0 0011222222 222233333222 111122222
Q ss_pred Hhhh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 008633 362 GMSS-YNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKL 440 (558)
Q Consensus 362 ~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 440 (558)
.+.. .|..-..-+.+--+.-+...|+-.+|.++-.+.+ .||...|..=+.+++..+++++-+++-+...
T Consensus 673 ~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------ 742 (829)
T KOG2280|consen 673 TLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------ 742 (829)
T ss_pred HHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------
Confidence 2221 1212222233444445555666666666654442 4566666666666666666665554443322
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 008633 441 SLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVME 501 (558)
Q Consensus 441 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (558)
++.-|.-.+.+|.+.|+.++|.+++.+.... . -...+|.+.|++.+|.+..-
T Consensus 743 sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 743 SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHH
Confidence 1334555666666777777776666554311 1 34556666666666655443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.12 Score=41.70 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 373 DTYTRLISGLLKSRKVADALEVFEE 397 (558)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~ 397 (558)
.++..+|.++++.|+.+....+++.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~ 27 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKS 27 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 4455555555555555555555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.41 Score=38.23 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 008633 476 DGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQN 544 (558)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 544 (558)
+....+..+..+..+|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.+.=+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44567777888888999888888888887643 688888889999999999999999999888777764
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.4 Score=40.29 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=56.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 311 GLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVAD 390 (558)
Q Consensus 311 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 390 (558)
.+...|++++|..+|.-+...++. +..-+..|..++-..+++++|...|......+ .-|...+-....+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHH
Confidence 345667777777777777665544 45556666667777777777777776655433 2334444555666777777777
Q ss_pred HHHHHHHHHH
Q 008633 391 ALEVFEEMLD 400 (558)
Q Consensus 391 A~~~~~~m~~ 400 (558)
|...|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777776665
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.091 Score=47.61 Aligned_cols=98 Identities=14% Similarity=0.159 Sum_probs=69.8
Q ss_pred ChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------------CHHHHHHH
Q 008633 266 NVMTYNIVISGWSK-----LGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAG----------------RIDDAIEV 324 (558)
Q Consensus 266 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g----------------~~~~a~~~ 324 (558)
|-.+|-+++..+.. .+.++-....++.|.+-|+.-|..+|+.|++.+-+-. +-+-+.++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 66677777766654 3567777778888999999999999999988765432 33457778
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHh
Q 008633 325 FDTMKEKGCGPDTNAYNAVISNYISVGD-FDECMKYYKGM 363 (558)
Q Consensus 325 ~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m 363 (558)
+++|+..|+.||-.+-..|++++.+.+- ..+..++.-.|
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 8888888888888888888888877664 23333443344
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.33 Score=40.77 Aligned_cols=86 Identities=9% Similarity=-0.154 Sum_probs=44.8
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 008633 418 CSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAV 497 (558)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 497 (558)
...|++++|..+|.-+...+ ..+..-+..|..++-..+++++|+..|......+ .-|...+-....++...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 34566666666666555433 2233344555555555566666666665544332 123333444555556666666666
Q ss_pred HHHHHHHh
Q 008633 498 LVMEESLR 505 (558)
Q Consensus 498 ~~~~~m~~ 505 (558)
..|+..++
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66655554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.8 Score=36.66 Aligned_cols=139 Identities=11% Similarity=0.145 Sum_probs=66.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 008633 175 RRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASS 254 (558)
Q Consensus 175 ~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~ 254 (558)
-.|.+++..+++.+.... .+..-++.+|.-....-+-+-..++++.+-+ -.|.. .+|++.....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHHHH
Confidence 345666666666665543 2444555555444444444444444443332 11211 1222222222
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008633 255 LFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCG 334 (558)
Q Consensus 255 ~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 334 (558)
.+-.+-. +....+..+..+.+.|+-+...+++.++.+.+ +++......+..+|.+.|+..++.+++.+..+.|++
T Consensus 78 C~~~~n~----~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 78 CYAKRNK----LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHTT-------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHhcc----hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 2222211 33445556666677777777777777766532 566666677777777777777777777777777653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.70 E-value=2.2 Score=41.43 Aligned_cols=76 Identities=13% Similarity=0.038 Sum_probs=39.9
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhcC----CCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008633 237 NVVLWCLCQRLHVGAASSLFNSMKGK----VLFNVMTYNIVISGWSK---LGQVVEMERVLKEIVAEGFSPDSLTFSFLI 309 (558)
Q Consensus 237 ~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 309 (558)
..++-.|....+++...++.+.+... +.-....--..+-++-+ .|+.++|++++..+....-.++..||..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34444566666666666666666543 11112222233344444 666677777766655444455666666555
Q ss_pred HHH
Q 008633 310 EGL 312 (558)
Q Consensus 310 ~~~ 312 (558)
+.|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.73 Score=47.02 Aligned_cols=160 Identities=18% Similarity=0.198 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhcC--CCC-----ChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 008633 237 NVVLWCLCQRLHVGAASSLFNSMKGK--VLF-----NVMTYNIVISGWSK----LGQVVEMERVLKEIVAEGFSPDSLTF 305 (558)
Q Consensus 237 ~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~-----~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 305 (558)
..++....=.|+-+.+++.+.+.... +.. -...|+..+..++- ....+.|.++++.+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34455555556666666666554332 110 11234444444443 45677888888888775 4666555
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 008633 306 SFL-IEGLGRAGRIDDAIEVFDTMKEKGC---GPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISG 381 (558)
Q Consensus 306 ~~l-l~~~~~~g~~~~a~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 381 (558)
... .+.+...|++++|.+.|+....... +.....+--+.-.+.-.+++++|.+.|..+.+.+ .-+..+|.-+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 433 3455667888888888886553211 1123344456667888889999999999988754 2334444443333
Q ss_pred -HHhcCCH-------HHHHHHHHHHH
Q 008633 382 -LLKSRKV-------ADALEVFEEML 399 (558)
Q Consensus 382 -~~~~g~~-------~~A~~~~~~m~ 399 (558)
+...|+. ++|.++|.+..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3445666 88888888764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.60 E-value=2.5 Score=41.33 Aligned_cols=144 Identities=10% Similarity=0.147 Sum_probs=91.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCC
Q 008633 184 NVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKV 263 (558)
Q Consensus 184 ~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 263 (558)
++=++.++. +.|..+|-.||..+...|..++..+++++|..- ++.-..+|..-+.+=...+++.....+|.+...+.
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 554555443 568899999999999999999999999999853 34445677777877777889999999998875542
Q ss_pred CCChhhHHHHHHHHHhcCCHH------HHHHHHHHHH-HcCCCCCH-HHH---HHHHHHHHhcCCH------HHHHHHHH
Q 008633 264 LFNVMTYNIVISGWSKLGQVV------EMERVLKEIV-AEGFSPDS-LTF---SFLIEGLGRAGRI------DDAIEVFD 326 (558)
Q Consensus 264 ~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~-~~g~~p~~-~t~---~~ll~~~~~~g~~------~~a~~~~~ 326 (558)
.+...|..-+..-.+....- ...+.|+-.. -.++.|-. ..| ...+...-..|.+ +...+.+.
T Consensus 107 -l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 107 -LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred -ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 25777877777655544211 1122333222 24555543 233 3344443344544 44556666
Q ss_pred HHHHC
Q 008633 327 TMKEK 331 (558)
Q Consensus 327 ~m~~~ 331 (558)
+|...
T Consensus 186 ral~t 190 (660)
T COG5107 186 RALQT 190 (660)
T ss_pred HHHcC
Confidence 66665
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.055 Score=39.63 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=12.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIV 294 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (558)
+|+.+...|...|++++|++.|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555555555555444
|
... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.51 E-value=2.3 Score=40.18 Aligned_cols=123 Identities=13% Similarity=0.042 Sum_probs=63.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHHhC-CHHHHHHHHHHHHhC--------CCCCC-----
Q 008633 174 GRRKFFDFMCNVLSDMAKEGVNPDLETLSIV-------MDSFIRAG-QVYKAIQMLGRLEDF--------GLKFD----- 232 (558)
Q Consensus 174 ~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~l-------i~~~~~~g-~~~~A~~~~~~~~~~--------g~~~~----- 232 (558)
.+.|+++.|..++.+....-...++.....+ .......+ +++.|..++++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4677888888888777654211222222222 22223445 777777666654432 11122
Q ss_pred HHHHHHHHHHHHhcCCHh---HHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008633 233 AESLNVVLWCLCQRLHVG---AASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 233 ~~~~~~ll~~~~~~~~~~---~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (558)
..++..++.+|...+..+ +|..+++.+....+-....+-.-+..+.+.++.+++.+.+.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 234455555555555433 3444555554444434455555555555566666666666666654
|
It is also involved in sporulation []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.52 Score=45.39 Aligned_cols=139 Identities=14% Similarity=0.065 Sum_probs=94.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 008633 378 LISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGK 457 (558)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 457 (558)
-.+.|.+.|++..|...|+..+.. +. ++..-+.++..... ..-..+++.+..++.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhh
Confidence 347788889999998888876542 00 11111111111111 1123566778888999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCH-HHHHHHH
Q 008633 458 CGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKL-ESAYNLF 535 (558)
Q Consensus 458 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~-~~A~~~~ 535 (558)
+.+|++......+.+ ++|....-.-..++...|+++.|+..|+++++. .|+ ..+-.-|+.+--+.... +...++|
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999876 678888888889999999999999999999976 565 44444455444444444 3446778
Q ss_pred HHHHH
Q 008633 536 RKIKI 540 (558)
Q Consensus 536 ~~m~~ 540 (558)
..|-.
T Consensus 350 ~~mF~ 354 (397)
T KOG0543|consen 350 ANMFA 354 (397)
T ss_pred HHHhh
Confidence 77753
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.31 E-value=1.4 Score=36.52 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=18.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 008633 343 VISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLK 384 (558)
Q Consensus 343 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 384 (558)
++..+...+.......+++.+...+ ..+...++.+|..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3444444444444444444444443 2334444444444444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.17 Score=45.99 Aligned_cols=102 Identities=20% Similarity=0.270 Sum_probs=72.0
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh----------------CCHHH
Q 008633 158 NVAKDVKSYNVIVKALGRR-----KFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRA----------------GQVYK 216 (558)
Q Consensus 158 ~~~~~~~~~~~li~~~~~~-----~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~----------------g~~~~ 216 (558)
+-..|-.+|-.++..+... +.++-.-..++.|.+-|+.-|..+|+.|++.+-+. .+-+-
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C 141 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNC 141 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhH
Confidence 3456777788887777543 45666667788888999999999999998776443 22344
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHh
Q 008633 217 AIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHV-GAASSLFNSM 259 (558)
Q Consensus 217 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~-~~A~~~~~~m 259 (558)
+++++++|...|+.||-++-..|++++.+.+-. .+..++.-.|
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 678888888888888888888888888776642 3344444444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.86 Score=45.86 Aligned_cols=57 Identities=9% Similarity=0.165 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 336 DTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
+...|..|.+...+.|+++-|++.|.+..+ |..|+-.|.-.|+.+.-.++.+.....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 334455555555555555555555444432 334444444444444444444443333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.79 Score=45.21 Aligned_cols=65 Identities=12% Similarity=-0.023 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008633 232 DAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNV---MTYNIVISGWSKLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 232 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (558)
+...++.+..+|.+.|++++|+..|++..+..|-+. .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666666666666666666666666554333333 23666666666666666666666666553
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.5 Score=36.26 Aligned_cols=41 Identities=10% Similarity=0.066 Sum_probs=18.2
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008633 204 VMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQ 245 (558)
Q Consensus 204 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 245 (558)
++..+...+.......+++.+.+.+. .+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 44444444444444444444444432 334444444444443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.98 E-value=2.6 Score=37.76 Aligned_cols=223 Identities=19% Similarity=0.178 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 281 GQVVEMERVLKEIVAEGFSP-DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK-GCGPDTNAYNAVISNYISVGDFDECMK 358 (558)
Q Consensus 281 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~ 358 (558)
+....+...+.......... ....+......+...+.+..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 45555555555555432211 2455555666666666666666666665542 222244455555666666666666666
Q ss_pred HHHHhhhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008633 359 YYKGMSSYNCEPNMDTYTRLIS-GLLKSRKVADALEVFEEMLDRGI--VPSTGTITSFLEPLCSYGPPHAAMMMYKKARK 435 (558)
Q Consensus 359 ~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (558)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....+
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666666543222 112222222 55666666666666666644211 01222222233333445555555555555554
Q ss_pred cCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 436 VGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSD-GEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 436 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
.........+..+...+...+..+.|...+....... |+ ...+..+...+...|..+++...+.+....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3211134445555555555555555555555555431 22 223333333333444555555555555443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.97 E-value=3.3 Score=39.04 Aligned_cols=62 Identities=13% Similarity=0.196 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 339 AYNAVISNYISVGDF---DECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 339 ~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
+...++.+|...+.. ++|.++++.+.... .-....+..-+..+.+.++.+++.+++.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 455566666665543 34444555554331 112334444455555566677777777777664
|
It is also involved in sporulation []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.87 Score=42.60 Aligned_cols=155 Identities=10% Similarity=-0.006 Sum_probs=106.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHh
Q 008633 174 GRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDF---GLKFDAESLNVVLWCLCQRLHVG 250 (558)
Q Consensus 174 ~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~ll~~~~~~~~~~ 250 (558)
--+|++.+|-..++++.+. .+.|..++...=.+|.-.|+...-...++++... +++...++-..+.-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3567788888888888776 4567778888888888899988888888888743 23323344445555667789999
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 251 AASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE---GFSPDSLTFSFLIEGLGRAGRIDDAIEVFDT 327 (558)
Q Consensus 251 ~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 327 (558)
+|++.-++.-+-.+.|..+-.++...+--.|++.++.+++.+-... +--.-..-|=...-.+...+.++.|+++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 9998888877767778888888888888899999988876654321 0000111122222334455888888888876
Q ss_pred HH
Q 008633 328 MK 329 (558)
Q Consensus 328 m~ 329 (558)
-+
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 43
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.90 E-value=2.9 Score=37.97 Aligned_cols=177 Identities=14% Similarity=0.155 Sum_probs=99.3
Q ss_pred HHhcCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----
Q 008633 347 YISVGDFDECMKYYKGMSSYN--CEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSY---- 420 (558)
Q Consensus 347 ~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---- 420 (558)
-.+.|++++|.+.|+.+.... -+-...+--.++.++.+.+++++|+..+++....-......-|...|.+++..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 346778888888888777542 11233445556677778888888888888777653322333344444444421
Q ss_pred ---CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 008633 421 ---GPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAV 497 (558)
Q Consensus 421 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 497 (558)
.+...+.+.+..+.+ ++.-|=...-...|......+... =...=..+...|.+.|.+..|.
T Consensus 124 ~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 124 DVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred ccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcChHHHH
Confidence 222223333322222 111111111112222222211110 0001123456788999999999
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 498 LVMEESLRKGFCPS----RLVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 498 ~~~~~m~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
.-+++|++. .|+ ...+..+.++|.+.|..++|.+.-+-+...
T Consensus 188 nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 188 NRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 999999987 233 456677888999999999999887777643
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.34 Score=47.65 Aligned_cols=66 Identities=12% Similarity=0.056 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHhhcC
Q 008633 195 NPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDA----ESLNVVLWCLCQRLHVGAASSLFNSMKGK 262 (558)
Q Consensus 195 ~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 262 (558)
+.+...++.+..+|.+.|++++|+..|++..+.. |+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4568899999999999999999999999998864 442 46899999999999999999999998764
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.83 Score=42.72 Aligned_cols=153 Identities=8% Similarity=0.008 Sum_probs=88.3
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHH--HHHHHHHHhcCChh
Q 008633 349 SVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPST--GTI--TSFLEPLCSYGPPH 424 (558)
Q Consensus 349 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~--~~ll~~~~~~g~~~ 424 (558)
-.|+..+|-..++++.+. .+.|...+.--=.+|.-+|+.+.-...++++... ..+|. ..| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456777777777777654 3566677777777777777777777777776654 12222 222 22222334567777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 008633 425 AAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQES---GYPSDGEIYEYVIAGLCNIGQLENAVLVME 501 (558)
Q Consensus 425 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (558)
+|++.-++..+.+ +.|.-.-.+....+...|+..++.++..+-.+. +--.-..-|....-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 7777776666654 445555555666666777777777766554421 100011223333334445577777777777
Q ss_pred HHH
Q 008633 502 ESL 504 (558)
Q Consensus 502 ~m~ 504 (558)
+=+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 644
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.69 Score=46.55 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 008633 198 LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGW 277 (558)
Q Consensus 198 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~ 277 (558)
..-...+++.+-+.|..+.|+++...-. .-.+...+.|+++.|.++.++.. +...|..|.+..
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~-----~~~~W~~Lg~~A 357 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELD-----DPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCS-----THHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcC-----cHHHHHHHHHHH
Confidence 3445566666666666666666543211 12344455666666665543332 455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 278 SKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECM 357 (558)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 357 (558)
.+.|+++-|.+.|.+... +..|+-.|.-.|+.+...++.+.....|- ++....++.-.|+.++..
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence 666666666666655432 33444455556666666666655555542 344444455556666666
Q ss_pred HHHHHh
Q 008633 358 KYYKGM 363 (558)
Q Consensus 358 ~~~~~m 363 (558)
+++.+.
T Consensus 423 ~lL~~~ 428 (443)
T PF04053_consen 423 DLLIET 428 (443)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 655544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.87 Score=41.60 Aligned_cols=88 Identities=13% Similarity=0.118 Sum_probs=37.8
Q ss_pred hcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCCHh
Q 008633 419 SYGPPHAAMMMYKKARKVG--CKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQES-GYPSD-GEIYEYVIAGLCNIGQLE 494 (558)
Q Consensus 419 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-~~~~~~li~~~~~~g~~~ 494 (558)
+.|++..|.+.|...++.. -......+-.|..++...|++++|..+|..+.+. +-.|. +..+--|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 3344444444444444421 1112333444445555555555555544444431 11111 133444444444555555
Q ss_pred HHHHHHHHHHhC
Q 008633 495 NAVLVMEESLRK 506 (558)
Q Consensus 495 ~A~~~~~~m~~~ 506 (558)
+|+..|++..+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.74 E-value=3.9 Score=38.77 Aligned_cols=129 Identities=17% Similarity=0.287 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC-
Q 008633 283 VVEMERVLKEIVAEGFSPDSLTFSFLIEGLGR--AG----RIDDAIEVFDTMKEKGC---GPDTNAYNAVISNYISVGD- 352 (558)
Q Consensus 283 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~g----~~~~a~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~- 352 (558)
+++...+++.|.+.|+.-+..+|.+..-.... .. ...++..+|+.|++... .++...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556777888888888777776653333322 22 34557778888877643 2334445545433 2222
Q ss_pred ---HHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008633 353 ---FDECMKYYKGMSSYNCEPNMD-TYTRLISGLLKSR---KVADALEVFEEMLDRGIVPSTGTITSF 413 (558)
Q Consensus 353 ---~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l 413 (558)
.+.++.+|+.+.+.|...+.. -+.+-|-+++... ....+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 355666777777766554332 2222222222211 134566677777777776666555544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.70 E-value=6.2 Score=40.92 Aligned_cols=189 Identities=13% Similarity=0.184 Sum_probs=105.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHhHHH
Q 008633 176 RKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGL--KFDAESLNVVLWCLCQRLHVGAAS 253 (558)
Q Consensus 176 ~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~~~~~~A~ 253 (558)
-|++++|.+++-+|.++.+ .|..+.+.|++-...++++.--. +. +.-...++.+...++....|++|.
T Consensus 747 ~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred hcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999988876632 45666777888777776643110 10 011346777777777777788887
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008633 254 SLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGC 333 (558)
Q Consensus 254 ~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 333 (558)
+.|..-... ...+.++.+...+++.+.+-+.+. -+....-.+..++.+.|.-++|.+.|-+ .+.
T Consensus 817 ~yY~~~~~~--------e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~ 880 (1189)
T KOG2041|consen 817 KYYSYCGDT--------ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLR---RSL 880 (1189)
T ss_pred HHHHhccch--------HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHh---ccC
Confidence 777654321 124455555555555444444332 2344445556666666666666655432 221
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 334 GPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTY--------------TRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 334 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
+ ...+..|...++|.+|.++-+... -|.+.+. .--|..+-++|++-+|.+++.+|.
T Consensus 881 p------kaAv~tCv~LnQW~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 881 P------KAAVHTCVELNQWGEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred c------HHHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHh
Confidence 1 123445555566666666555433 2222221 112445566777777777776664
Q ss_pred H
Q 008633 400 D 400 (558)
Q Consensus 400 ~ 400 (558)
+
T Consensus 951 e 951 (1189)
T KOG2041|consen 951 E 951 (1189)
T ss_pred H
Confidence 3
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.55 E-value=3.9 Score=37.91 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=34.7
Q ss_pred HHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcC
Q 008633 206 DSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGK 262 (558)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 262 (558)
......|++.+|..+|......... +...--.+..+|...|+.+.|..++..+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 3445667777777777766654322 3445556666677777777777777666543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.46 E-value=7.5 Score=41.33 Aligned_cols=110 Identities=17% Similarity=0.211 Sum_probs=69.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 008633 172 ALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGA 251 (558)
Q Consensus 172 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~ 251 (558)
.+-+.|++++|..-|-+-... +.| .-+|.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.+.
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHH
Confidence 344789999998877665432 233 23556666677777777888888888866 55566778888988888887
Q ss_pred HHHHHHHhhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008633 252 ASSLFNSMKGK-VLFNVMTYNIVISGWSKLGQVVEMERVLK 291 (558)
Q Consensus 252 A~~~~~~m~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 291 (558)
-.++.+....+ ...| ....+..+.+.+-.++|..+-.
T Consensus 450 L~efI~~~~~g~~~fd---~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 450 LTEFISKCDKGEWFFD---VETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHhcCCCcceeee---HHHHHHHHHHhChHHHHHHHHH
Confidence 77776655432 1111 2344555555555555554433
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.7 Score=44.53 Aligned_cols=62 Identities=13% Similarity=0.010 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK 331 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 331 (558)
+++.+.-++.+.+++.+|+..-.+.+..+ ++|+...---..++...|+++.|+..|+++.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44555555555555555555555555443 234444444444555555555555555555544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.38 E-value=1.6 Score=35.90 Aligned_cols=78 Identities=8% Similarity=-0.008 Sum_probs=53.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008633 169 IVKALGRRKFFDFMCNVLSDMAKEG--VNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQR 246 (558)
Q Consensus 169 li~~~~~~~~~~~a~~l~~~m~~~g--~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 246 (558)
-.....+.|++++|.+.|+.+..+- .+-...+-..++.++.+.|++++|...+++.++....-....|...+.+++.-
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3444557889999999999888762 12244567778888889999999999998888765443334455555555443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.35 E-value=1.8 Score=45.62 Aligned_cols=49 Identities=16% Similarity=0.369 Sum_probs=23.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 313 GRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKG 362 (558)
Q Consensus 313 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 362 (558)
..+.++.+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 3334444444445555555544 333444455555555555554444443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.24 E-value=3 Score=39.59 Aligned_cols=227 Identities=15% Similarity=0.121 Sum_probs=102.2
Q ss_pred HhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhc
Q 008633 278 SKLGQVVEMERVLKEIVAE--GFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK--GCGPD---TNAYNAVISNYISV 350 (558)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~~~~~li~~~~~~ 350 (558)
....+.++|+..+.+-... ...--..+|..+..+.++.|.+++++..--.-+.. ...-. -..|-.+.+++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777666665542 11112345666666667777666654432111110 01101 12334444444444
Q ss_pred CCHHHHHHHHHHhhhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHhcC
Q 008633 351 GDFDECMKYYKGMSSY-NCEP---NMDTYTRLISGLLKSRKVADALEVFEEMLDRGI---VP--STGTITSFLEPLCSYG 421 (558)
Q Consensus 351 g~~~~A~~~~~~m~~~-~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p--~~~~~~~ll~~~~~~g 421 (558)
.++.+++.+-..-... |..| -.....++..++...+.++++++.|+...+.-. .| ....+..+-..+....
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4555555544433321 1111 112233455555566666666666666544211 11 1234555555556666
Q ss_pred ChhHHHHHHHHHHH----cCCCCCHHHH-----HHHHHHHHcCCChhHHHHHHHHHH----HCCCCCC-HHHHHHHHHHH
Q 008633 422 PPHAAMMMYKKARK----VGCKLSLTAY-----KLLLRRLSGFGKCGMLLDLWHEMQ----ESGYPSD-GEIYEYVIAGL 487 (558)
Q Consensus 422 ~~~~a~~~~~~~~~----~~~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~----~~~~~p~-~~~~~~li~~~ 487 (558)
++++|.-+..++.+ .++..-..-| ..+.-++-..|....|.+..++.. ..|-.+. ......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 66666655544433 1211111111 122334455566655555555443 2331111 11223444555
Q ss_pred HhcCCHhHHHHHHHHHH
Q 008633 488 CNIGQLENAVLVMEESL 504 (558)
Q Consensus 488 ~~~g~~~~A~~~~~~m~ 504 (558)
...|+.+.|..-|+++.
T Consensus 257 R~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAM 273 (518)
T ss_pred HhcccHhHHHHHHHHHH
Confidence 56666666666665554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.16 E-value=1.6 Score=43.39 Aligned_cols=84 Identities=13% Similarity=0.168 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--HHHHHHH
Q 008633 442 LTAYKLLLRRLSGFGKCGMLLDLWHEMQES-GYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS--RLVYSKL 518 (558)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l 518 (558)
..+-..+..++.+.|+.++|++.+++|.+. ....+..+...|+.++...+.+.++..++.+.-+... |. ...|+..
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaA 337 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAA 337 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHH
Confidence 333345666777889999999999988753 2222445778899999999999999999988754332 33 3455554
Q ss_pred HHHHHhcC
Q 008633 519 SNKLLASN 526 (558)
Q Consensus 519 ~~~~~~~g 526 (558)
+-.+...|
T Consensus 338 LLkaRav~ 345 (539)
T PF04184_consen 338 LLKARAVG 345 (539)
T ss_pred HHHHHhhc
Confidence 44444343
|
The molecular function of this protein is uncertain. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.11 E-value=4.4 Score=36.81 Aligned_cols=81 Identities=9% Similarity=0.027 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEG--VNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g--~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
...|+.-+. -.+.|++++|.+.|+.+..+. -+-...+...++-++-+.++.+.|+..+++..+.-..-....|..-|
T Consensus 35 ~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 344554444 457899999999999998763 22345567777778888899999998888877643333334455555
Q ss_pred HHHH
Q 008633 241 WCLC 244 (558)
Q Consensus 241 ~~~~ 244 (558)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 5554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.93 E-value=1.2 Score=35.52 Aligned_cols=90 Identities=18% Similarity=0.059 Sum_probs=53.6
Q ss_pred HHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHHhcCC
Q 008633 242 CLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE-GFSPDS---LTFSFLIEGLGRAGR 317 (558)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~---~t~~~ll~~~~~~g~ 317 (558)
+++..|+++.|++.|.+...-.|.+...||.-..++.-.|+.++|++-+++..+. |-+ +. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 3455666666666666665555556667777777777777777777766666653 222 21 223333334555667
Q ss_pred HHHHHHHHHHHHHCC
Q 008633 318 IDDAIEVFDTMKEKG 332 (558)
Q Consensus 318 ~~~a~~~~~~m~~~g 332 (558)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777776666666555
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.88 E-value=4.5 Score=36.08 Aligned_cols=166 Identities=19% Similarity=0.162 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008633 233 AESLNVVLWCLCQRLHVGAASSLFNSMKG--KVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIE 310 (558)
Q Consensus 233 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 310 (558)
...+......+...+.+..+...+..... ..+.....+......+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 34444455555555555555555554433 223344444555555555555555555555555432222 111111111
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhcC
Q 008633 311 -GLGRAGRIDDAIEVFDTMKEKGC--GPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEP-NMDTYTRLISGLLKSR 386 (558)
Q Consensus 311 -~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g 386 (558)
.+...|+++.+...+.+...... ......+......+...++.+.|...+....... .. ....+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcc
Confidence 44555555555555555533211 0122222223333444455555555555554432 11 2333444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 008633 387 KVADALEVFEEMLD 400 (558)
Q Consensus 387 ~~~~A~~~~~~m~~ 400 (558)
+++.|...+.....
T Consensus 217 ~~~~a~~~~~~~~~ 230 (291)
T COG0457 217 KYEEALEYYEKALE 230 (291)
T ss_pred cHHHHHHHHHHHHh
Confidence 44444444444443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.096 Score=33.29 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 479 IYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
+|..+...|...|++++|.++++++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.79 E-value=7.2 Score=38.13 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=33.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 273 VISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK 331 (558)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 331 (558)
.+.+.-+.|+++...+........ .++...|.++... +.++.+++....+.+...
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence 356677788888855555444322 2344444444433 778888888877776543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.67 E-value=1.7 Score=39.77 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-CCCCC-HHHHHH
Q 008633 443 TAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPS---DGEIYEYVIAGLCNIGQLENAVLVMEESLRK-GFCPS-RLVYSK 517 (558)
Q Consensus 443 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-~~~~~~ 517 (558)
..|+.-+.. .+.|++..|...|...++.. +- ....+-.|..++...|++++|..+|..+.+. +-.|. +..+..
T Consensus 143 ~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 143 KLYNAALDL-YKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 367776664 46677999999999998742 11 1235666899999999999999999999875 11222 588999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcC
Q 008633 518 LSNKLLASNKLESAYNLFRKIKIARQ 543 (558)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~m~~~~~ 543 (558)
|.....+.|+.++|...|+++.+.-.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999986433
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=7.8 Score=38.59 Aligned_cols=108 Identities=12% Similarity=0.157 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 008633 424 HAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEES 503 (558)
Q Consensus 424 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 503 (558)
.+|.++-++..+.+ +.|......+..++...++++.|...|++....+ +....+|......+.-.|+.++|.+.+++.
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555556666654 4566666666666667777888888888877653 223446666666667788888888888887
Q ss_pred HhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 504 LRKGFCPS---RLVYSKLSNKLLASNKLESAYNLFR 536 (558)
Q Consensus 504 ~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~ 536 (558)
++. .|. ..+....++.|+.++ .++|..++-
T Consensus 399 lrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 399 LQL--EPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred hcc--CchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 754 354 233444444565554 355555543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.09 E-value=2.4 Score=33.98 Aligned_cols=90 Identities=17% Similarity=0.072 Sum_probs=40.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCH
Q 008633 417 LCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDG---EIYEYVIAGLCNIGQL 493 (558)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~ 493 (558)
....|+.+.|++.|.+....- +-....||.-.+++.-+|+.++|++-+++..+..-.-.. ..|..-...|...|+-
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344455555555555544421 233445555555555555555555555554442101111 1222223334445555
Q ss_pred hHHHHHHHHHHhCC
Q 008633 494 ENAVLVMEESLRKG 507 (558)
Q Consensus 494 ~~A~~~~~~m~~~g 507 (558)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 55555555555444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.05 E-value=1.1 Score=41.56 Aligned_cols=78 Identities=12% Similarity=0.082 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 008633 234 ESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA-----EGFSPDSLTFSFL 308 (558)
Q Consensus 234 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~l 308 (558)
.++..++..+...|+.+.+.+.++++....|-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 35556677777788888888888888777777888888888888888888888888887765 3666766655544
Q ss_pred HHH
Q 008633 309 IEG 311 (558)
Q Consensus 309 l~~ 311 (558)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.97 E-value=14 Score=38.88 Aligned_cols=15 Identities=7% Similarity=0.133 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHCC
Q 008633 458 CGMLLDLWHEMQESG 472 (558)
Q Consensus 458 ~~~A~~~~~~m~~~~ 472 (558)
+..|.++++...+.+
T Consensus 525 ~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 525 LHLAKRYYDQASEED 539 (552)
T ss_pred hHHHHHHHHHHHhcC
Confidence 567777777776643
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.82 E-value=1.4 Score=40.82 Aligned_cols=78 Identities=17% Similarity=0.292 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 008633 338 NAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLD-----RGIVPSTGTITS 412 (558)
Q Consensus 338 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~ 412 (558)
.++..++..+...|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 356667777777888888888888777664 55777788888888888888888887777654 466666655554
Q ss_pred HHHH
Q 008633 413 FLEP 416 (558)
Q Consensus 413 ll~~ 416 (558)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=92.74 E-value=3.8 Score=37.96 Aligned_cols=64 Identities=5% Similarity=-0.030 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 008633 194 VNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDF-GLKFDAESLNVVLWCLCQRLHVGAASSLFN 257 (558)
Q Consensus 194 ~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 257 (558)
-.++..+...++..+++.+++.+-.++++..... +..-|...|...|+...+.|+..-...+.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3455555555666666666666666665555433 444455556666666666666555555554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.65 E-value=5.8 Score=33.77 Aligned_cols=51 Identities=16% Similarity=0.420 Sum_probs=27.5
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 008633 357 MKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTIT 411 (558)
Q Consensus 357 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 411 (558)
.++++.+.+.+++|+...|..+|+.+.+.|++. .+.++...++-+|.....
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA 64 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLA 64 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHH
Confidence 445555555566666666666666666666544 333444445555544433
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.63 E-value=11 Score=37.07 Aligned_cols=79 Identities=11% Similarity=0.114 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
+-|..+|-.||.-+...+.+++..+++++|..- .+--..+|..-+++=....++.....+|.+..+..+. ...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHH
Confidence 457788888888888888888888888888654 2223456666676666667778888888777765433 3344443
Q ss_pred HH
Q 008633 240 LW 241 (558)
Q Consensus 240 l~ 241 (558)
+.
T Consensus 116 l~ 117 (660)
T COG5107 116 LE 117 (660)
T ss_pred HH
Confidence 33
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.61 E-value=5.9 Score=33.75 Aligned_cols=132 Identities=16% Similarity=0.103 Sum_probs=66.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--ChhHHHHHHHHHHH
Q 008633 393 EVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFG--KCGMLLDLWHEMQE 470 (558)
Q Consensus 393 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 470 (558)
+.++.+.+.++.|+...+..+++.+.+.|++....+ +...++-+|.......+-.+.... -.+-|++++.++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 344445566677777777777777777766544433 333444444433333322121111 02223333333321
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 471 SGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 471 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
.+..++..+...|++-+|+++.+..... +......++++..+.++...-..+++-..+
T Consensus 91 --------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 --------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred --------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3555666677777777777777654221 111223455666666666555555554443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.48 E-value=16 Score=38.40 Aligned_cols=47 Identities=11% Similarity=0.049 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHhHHHHHHHHHHhCC
Q 008633 458 CGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNI----GQLENAVLVMEESLRKG 507 (558)
Q Consensus 458 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g 507 (558)
...+...+......| +......+...|... .+.+.|...+.....++
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 344444555444433 333344444433322 23555666665555443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.43 E-value=10 Score=36.03 Aligned_cols=131 Identities=15% Similarity=0.197 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCh
Q 008633 353 FDECMKYYKGMSSYNCEPNMDTYTRLISGLLK--SR----KVADALEVFEEMLDRGI---VPSTGTITSFLEPLCSYGPP 423 (558)
Q Consensus 353 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~g~~ 423 (558)
+++...+++.|.+.|...+..+|-+....... .. ....|..+++.|++... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44556677777777777666655543222222 12 34456777777776532 2344455555432 22222
Q ss_pred ----hHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008633 424 ----HAAMMMYKKARKVGCKLSL--TAYKLLLRRLSGFGK--CGMLLDLWHEMQESGYPSDGEIYEYVIA 485 (558)
Q Consensus 424 ----~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~ 485 (558)
+.++.+|+.+.+.|+..+- .....++........ +..+.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 3455566666665554432 233333322222211 3355666677777776666655554443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.42 E-value=3.3 Score=39.39 Aligned_cols=166 Identities=15% Similarity=0.125 Sum_probs=88.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAE-GFSP---DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGC-----GPDTNA 339 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~~ 339 (558)
+|-.+.+++-+..++.+++.+-..-... |..| ......++..++...+.++++++.|+...+-.. .....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4555555555555555555554443321 2222 112233455666666777777777776654311 112346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHH----CCCCCC
Q 008633 340 YNAVISNYISVGDFDECMKYYKGMSS----YNCEPNMDTYTR-----LISGLLKSRKVADALEVFEEMLD----RGIVPS 406 (558)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~----~~~~p~ 406 (558)
|..|...|.+..|+++|.-+..+..+ .++.--..-|.. |.-++-..|...+|.+.-++..+ .|-.+.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 77777788888888877766655432 221111122322 33345566777666666665433 232221
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008633 407 -TGTITSFLEPLCSYGPPHAAMMMYKKAR 434 (558)
Q Consensus 407 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (558)
......+.+.|...|+.+.|+.-|+.+.
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2334556666777788887777776543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.42 E-value=8 Score=34.84 Aligned_cols=208 Identities=13% Similarity=0.070 Sum_probs=107.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008633 162 DVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLW 241 (558)
Q Consensus 162 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 241 (558)
-...|..-..+|...+++++|...+.+..+- ..-+..-|+ . ....+.|.-+.+++.+. .--+..|+--..
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~ 99 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASE 99 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 3455777777788888888888877766532 122222222 1 22335555555555542 112344566667
Q ss_pred HHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--CCCCHHHHHHHHHHHHhcC
Q 008633 242 CLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE---G--FSPDSLTFSFLIEGLGRAG 316 (558)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g--~~p~~~t~~~ll~~~~~~g 316 (558)
+|..+|..+.|-..+++.-.- .+..++++|+++|.+...- + .+.-...|...-+.+.+..
T Consensus 100 lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 778888877776666654321 1223455555555544321 1 0111223444455566666
Q ss_pred CHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCCCHHHHHHHHHHHHhcCCH
Q 008633 317 RIDDAIEVFDTMKEK----GCGPDT-NAYNAVISNYISVGDFDECMKYYKGMSSYN---CEPNMDTYTRLISGLLKSRKV 388 (558)
Q Consensus 317 ~~~~a~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~ 388 (558)
++++|-..+.+-... .--++. ..|...|-.|.-..++..|.+.++.--+.+ -.-+..+...|+.+| ..|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence 666655444332111 111111 234445555666677778888877744322 223455666666665 45666
Q ss_pred HHHHHHH
Q 008633 389 ADALEVF 395 (558)
Q Consensus 389 ~~A~~~~ 395 (558)
+++..++
T Consensus 244 E~~~kvl 250 (308)
T KOG1585|consen 244 EEIKKVL 250 (308)
T ss_pred HHHHHHH
Confidence 6655543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.35 E-value=6 Score=33.25 Aligned_cols=52 Identities=12% Similarity=-0.107 Sum_probs=24.1
Q ss_pred hcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008633 245 QRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (558)
+.++.+++..+++.+.---|-....-..-...+.+.|++.+|..+|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3445555555555554322222222222233344556666666666665443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.36 Score=30.60 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=6.9
Q ss_pred HHHHHhCCHHHHHHHHHHH
Q 008633 206 DSFIRAGQVYKAIQMLGRL 224 (558)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~~ 224 (558)
..|.+.|++++|+++|+++
T Consensus 9 ~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 9 RAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 3333333333333333333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.16 E-value=10 Score=35.35 Aligned_cols=53 Identities=11% Similarity=0.149 Sum_probs=28.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 312 LGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 312 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
....|++.+|..+|+........ +...--.+..+|...|+.+.|..++..+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 34455555666655555544333 233444455666666666666666665543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.26 Score=29.65 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 515 YSKLSNKLLASNKLESAYNLFRKI 538 (558)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~m 538 (558)
|..|.+.|.+.|++++|++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555666666666666666553
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.04 E-value=15 Score=36.98 Aligned_cols=159 Identities=12% Similarity=0.059 Sum_probs=87.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 309 IEGLGRAGRIDDAIEVFDTMKEKGCGPD-TNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRK 387 (558)
Q Consensus 309 l~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 387 (558)
|.-.-+..+...-.+.-.+..+. .|+ ...|.. -+--.+..+.+|+++|++..+.| ...+ +...
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei--~pdCAdAYIL--LAEEeA~Ti~Eae~l~rqAvkAg----E~~l--------g~s~ 238 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEI--NPDCADAYIL--LAEEEASTIVEAEELLRQAVKAG----EASL--------GKSQ 238 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhh--cccccccCHHHHHHHHHHHHHHH----HHhh--------chhh
Confidence 33334455555555555555554 222 122222 22223556888888888877643 1111 0000
Q ss_pred HHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 008633 388 VADAL-EVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVG-CKLSLTAYKLLLRRLSGFGKCGMLLDLW 465 (558)
Q Consensus 388 ~~~A~-~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~ 465 (558)
..+.. ..++.+......+-...-..+..++-+.|+.++|++.++++.+.. ..........|+.++...+.+.++..++
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 00000 111112222222222233445556667899999999999998753 2234567788999999999999999999
Q ss_pred HHHHHCCCCCCHH--HHHHHH
Q 008633 466 HEMQESGYPSDGE--IYEYVI 484 (558)
Q Consensus 466 ~~m~~~~~~p~~~--~~~~li 484 (558)
.+-.+... |... +|+..+
T Consensus 319 ~kYdDi~l-pkSAti~YTaAL 338 (539)
T PF04184_consen 319 AKYDDISL-PKSATICYTAAL 338 (539)
T ss_pred HHhccccC-CchHHHHHHHHH
Confidence 98765433 3333 455544
|
The molecular function of this protein is uncertain. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=91.20 E-value=11 Score=39.97 Aligned_cols=61 Identities=7% Similarity=-0.040 Sum_probs=38.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHhCCC
Q 008633 168 VIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQ-------VYKAIQMLGRLEDFGL 229 (558)
Q Consensus 168 ~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~-------~~~A~~~~~~~~~~g~ 229 (558)
.+|-.|.|.|.+++|.++..+.... .......+...+..++...+ -++...-|.+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 5677888999999999999666554 34445667777777766432 2345555666555433
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.06 E-value=30 Score=38.67 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=40.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008633 344 ISNYISVGDFDECMKYYKGMSSYNCEPNMD--TYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYG 421 (558)
Q Consensus 344 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 421 (558)
+.+|..+|+|.+|+.+-.++.. ..+.. +-..|+.-+...++.-+|-++..+.... |. -.+..+|+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHh
Confidence 4455555555555555555542 11211 1245556666666666666666655432 11 2233455666
Q ss_pred ChhHHHHHHHHH
Q 008633 422 PPHAAMMMYKKA 433 (558)
Q Consensus 422 ~~~~a~~~~~~~ 433 (558)
.+++|.++....
T Consensus 1041 ~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1041 EWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHhc
Confidence 666666655443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.90 E-value=5.1 Score=34.74 Aligned_cols=60 Identities=12% Similarity=0.034 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDS--LTFSFLIEGLGRAGRIDDAIEVFDTM 328 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m 328 (558)
.+..+...|++.|+.++|.+.|.++.+....+.. ..+-.+|+...-.+++..+.....+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4455555566666666666666655554322221 23444555555555555555554444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.69 E-value=5.2 Score=34.69 Aligned_cols=63 Identities=10% Similarity=0.038 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 008633 164 KSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD--LETLSIVMDSFIRAGQVYKAIQMLGRLED 226 (558)
Q Consensus 164 ~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~--~~t~~~li~~~~~~g~~~~A~~~~~~~~~ 226 (558)
..+..+.+.|.+.|+.+.|++.|.++......+. ...+-.+|+.....+++..+...+.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4577777888888888888888888777643332 34566777777788888887777766653
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=90.69 E-value=19 Score=35.91 Aligned_cols=132 Identities=11% Similarity=0.063 Sum_probs=72.9
Q ss_pred hhH--HHHHHHHHhcC-----CHHHHHHHHHHHHHc-CCCCCH-HHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 008633 268 MTY--NIVISGWSKLG-----QVVEMERVLKEIVAE-GFSPDS-LTFSFLIEGLGR---------AGRIDDAIEVFDTMK 329 (558)
Q Consensus 268 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~~-g~~p~~-~t~~~ll~~~~~---------~g~~~~a~~~~~~m~ 329 (558)
..| ..++.+..... ..+.|+.+|.+.... .+.|+- ..|..+..++.. .....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 55555554421 345667777777621 234442 333333222211 223445666666666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 330 EKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 330 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
+.+.. |......+..+..-.++++.|...|++....+ +-...+|......+.-+|+.++|.+.+++..+.
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 66544 66666666666666677777777777776653 222344444444555577777777777775553
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=90.55 E-value=15 Score=34.26 Aligned_cols=147 Identities=15% Similarity=0.184 Sum_probs=85.5
Q ss_pred CchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHH-hC-CHHHH
Q 008633 141 LSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAK-EGVNPDLETLSIVMDSFIR-AG-QVYKA 217 (558)
Q Consensus 141 ~~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~-~g~~~~~~t~~~li~~~~~-~g-~~~~A 217 (558)
...+....|++-+..+....+... |..|+. ++..+.+|+.+|+.... ..+--|..+...+++.... .+ ....-
T Consensus 110 Lt~~Dli~FL~~~i~~~~~~k~~~-Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~al 185 (292)
T PF13929_consen 110 LTKEDLISFLKLVIINLSSNKSFN-YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNAL 185 (292)
T ss_pred CcHHHHHHHHHHHHhccccccchH-HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhH
Confidence 334455566666554443333322 555443 34456677777774322 2344577777777777765 22 12222
Q ss_pred HHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008633 218 IQMLGRLE-DFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGK--VLFNVMTYNIVISGWSKLGQVVEMERVLK 291 (558)
Q Consensus 218 ~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 291 (558)
-++.+.+. ..|-.++..+...++..+++.+++..-.++.+..... ...|...|...|......|+..-+.++.+
T Consensus 186 YEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 186 YEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 23333333 3345667777777788888888888777777766443 33466778888888888887765555544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=90.31 E-value=23 Score=36.23 Aligned_cols=162 Identities=10% Similarity=0.015 Sum_probs=89.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHh----cCCHhHHHHHHHHhhcCCCCChhhHH
Q 008633 202 SIVMDSFIRAGQVYKAIQMLGRLEDFG-LKFD-----AESLNVVLWCLCQ----RLHVGAASSLFNSMKGKVLFNVMTYN 271 (558)
Q Consensus 202 ~~li~~~~~~g~~~~A~~~~~~~~~~g-~~~~-----~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~ 271 (558)
..++...+=.|+-+.+++.+.+..+.+ +.-. .-.|+..+..++. ....+.|.++++.+..+.|-+....-
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 334445555677777777777665432 2111 1233344443333 34566777777777776664444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHH
Q 008633 272 IVISGWSKLGQVVEMERVLKEIVAEG---FSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAV-ISNY 347 (558)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~ 347 (558)
.-.+.+...|++++|++.|++..... .+.....+--+.-.+.-..++++|.+.|..+.+..-- +..+|.-+ ..++
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~ 350 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHH
Confidence 55566677777888888777655311 0112233344455566677788887777777765322 33333333 2334
Q ss_pred HhcCCH-------HHHHHHHHHhh
Q 008633 348 ISVGDF-------DECMKYYKGMS 364 (558)
Q Consensus 348 ~~~g~~-------~~A~~~~~~m~ 364 (558)
...|+. ++|.++|.+..
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHH
Confidence 455665 66666666554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.72 Score=27.66 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 479 IYEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
+|..|...|.+.|++++|+.++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888899999999999998854
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.88 E-value=10 Score=31.30 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=34.7
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNV---MTYNIVISGWSKLGQVVEMERVLKEIVAEG 297 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 297 (558)
..+.|++++|.+.|+.+..+.|.+. .+--.++.+|.+.+++++|...+++.++..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3456667777777777666544433 334456677777777777777777776653
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.48 E-value=25 Score=35.39 Aligned_cols=179 Identities=12% Similarity=0.085 Sum_probs=124.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
.|-...-+++..++.+..+.-...+..+|..-| -+-..|..++..|... .-+.-..+++++.+..+. |++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 455667788999999999999999999999876 4677889999999888 556778889988886543 444444455
Q ss_pred HHHHhcCCHhHHHHHHHHhhcCCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 008633 241 WCLCQRLHVGAASSLFNSMKGKVLF------NVMTYNIVISGWSKLGQVVEMERVLKEIVA-EGFSPDSLTFSFLIEGLG 313 (558)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~ 313 (558)
..|- .++...+...|..+..++-| -...|..++..- ..+.+..+.+..+... .|...-.+.+.-+-.-|.
T Consensus 140 ~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 5554 48888888888877544222 122465555532 2466777777666654 344455566677777788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008633 314 RAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNY 347 (558)
Q Consensus 314 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 347 (558)
...++++|.+++..+.+..-. |..+-..++..+
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 889999999999988776543 544444444433
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.35 E-value=7.4 Score=34.07 Aligned_cols=73 Identities=14% Similarity=-0.002 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 008633 180 DFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLED---FGLKFDAESLNVVLWCLCQRLHVGAAS 253 (558)
Q Consensus 180 ~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~---~g~~~~~~~~~~ll~~~~~~~~~~~A~ 253 (558)
++|.+.|-.+...+.--++.....+...|. ..+.+++++++....+ .+-.+|+..+.+|+..+.+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 566777777776665556666655555554 6678888888877664 233567777778888777777777664
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.25 E-value=12 Score=31.45 Aligned_cols=19 Identities=21% Similarity=0.566 Sum_probs=9.7
Q ss_pred HHhcCCHHHHHHHHHHhhh
Q 008633 347 YISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 347 ~~~~g~~~~A~~~~~~m~~ 365 (558)
+...|++.+|..+|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3445555555555555443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.77 E-value=31 Score=35.48 Aligned_cols=345 Identities=12% Similarity=0.088 Sum_probs=198.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLET-LSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t-~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
-+...|..+|.---.....+.+..+++.+... .|...- |......=.+.|..+.+.++|++.+. |++.+...|...
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 45666777777766666777888888888765 455553 44445555678999999999999885 466677777777
Q ss_pred HHHHHh-cCCHhHHHHHHHHhhcC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--
Q 008633 240 LWCLCQ-RLHVGAASSLFNSMKGK---VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLG-- 313 (558)
Q Consensus 240 l~~~~~-~~~~~~A~~~~~~m~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-- 313 (558)
+..++. .|+.+.....|+....- .-.+...|...|.--...+++.....++++.++. ....|+..-.-|.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHH
Confidence 665554 46777788888877542 2235667888888888889999999999998874 2223333222221
Q ss_pred -hc------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH--HH-------HH
Q 008633 314 -RA------GRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMD--TY-------TR 377 (558)
Q Consensus 314 -~~------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~-------~~ 377 (558)
+. ...+++.++-....+. ..-...++ .+..+=..+...+.+-+.. .- ..
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~--~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~ 260 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAER-------------SKITHSQE--PLEELEIGVKDSTDPSKSLTEEKTILKRIVSI 260 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccC--hhHHHHHHHhhccCccchhhHHHHHHHHHHHH
Confidence 11 1222222222211111 00000011 1111111111111111110 11 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008633 378 LISGLLKSRKVADALEVFEEMLDR---GIVP----STGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLR 450 (558)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~m~~~---~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 450 (558)
.-..+-......+....+++-+.. .++| +..+|...+.--...|+.+.+.-+++++.-- +..-...|-..+.
T Consensus 261 ~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~ 339 (577)
T KOG1258|consen 261 HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYAR 339 (577)
T ss_pred HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHH
Confidence 112222333334444444444332 1222 3467888887777889999999988877541 1222344444555
Q ss_pred HHHcCCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 008633 451 RLSGFGKCGMLLDLWHEMQESGY--PSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNK 527 (558)
Q Consensus 451 ~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 527 (558)
-....|+.+-|..++....+.-+ .|......+.+ .-..|+++.|..+++...+. + |+ ...-..-+....+.|.
T Consensus 340 ~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~ 415 (577)
T KOG1258|consen 340 WMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGN 415 (577)
T ss_pred HHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcc
Confidence 55556888888888877765332 33333333333 33568999999999998876 3 66 3344444556677888
Q ss_pred HHHHH
Q 008633 528 LESAY 532 (558)
Q Consensus 528 ~~~A~ 532 (558)
.+.+.
T Consensus 416 ~~~~~ 420 (577)
T KOG1258|consen 416 LEDAN 420 (577)
T ss_pred hhhhh
Confidence 88877
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.54 E-value=3 Score=31.37 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008633 180 DFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLE 225 (558)
Q Consensus 180 ~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 225 (558)
-++.+-+..+....+.|++....+.+++|-+.+++..|+.+++-++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444445555555566666666666666666666666666666555
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.29 E-value=2.9 Score=31.87 Aligned_cols=43 Identities=12% Similarity=0.213 Sum_probs=19.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008633 183 CNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLE 225 (558)
Q Consensus 183 ~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 225 (558)
.+-+..+....+.|++....+.+++|-+.+++..|+.+++-++
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333333344444555555555555555555555555555544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.21 E-value=9.5 Score=35.71 Aligned_cols=100 Identities=11% Similarity=0.087 Sum_probs=47.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008633 264 LFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEG---FSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAY 340 (558)
Q Consensus 264 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 340 (558)
+....+...++..-....+++.++..+-+++..- ..|+... .+.++.+. .-+.++++.++..=+.-|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchhhH
Confidence 3344444445554444555556655555554321 1111111 11222222 22344555555555555555566666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 341 NAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 341 ~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
+.+|+.+.+.+++.+|..+...|..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6666666666665555555555443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.00 E-value=16 Score=31.16 Aligned_cols=139 Identities=13% Similarity=0.107 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHH-HHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD-LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAE-SLNV 238 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~-~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~ 238 (558)
.+...|..-++ +.+.+..++|+.-|.++.+.|...= +-..-.+.......|+...|+..|.++-+....|-.. -...
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34455555444 3566778888888888888764321 1222333455667788888888888887654333332 1111
Q ss_pred H--HHHHHhcCCHhHHHHHHHHhhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008633 239 V--LWCLCQRLHVGAASSLFNSMKGK-VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSP 300 (558)
Q Consensus 239 l--l~~~~~~~~~~~A~~~~~~m~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 300 (558)
| ...+...|.++......+-+... .+.-...-..|.-+-.+.|++..|..+|..+......|
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 1 22355667777777766666443 33333445566667777788888888887777644333
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=87.81 E-value=31 Score=34.30 Aligned_cols=364 Identities=9% Similarity=0.030 Sum_probs=191.9
Q ss_pred hHHHHHHHHHHhcCCCCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHH
Q 008633 143 GEAMVLFFNWAIKHPNVAK------------DVKSYNVIVKALGRRKFFDFMCNVLSDMAKEG----VNPDLETLSIVMD 206 (558)
Q Consensus 143 ~~~~~~ff~~~~~~~~~~~------------~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g----~~~~~~t~~~li~ 206 (558)
..+...+-.|..+..+..+ |...=+..++.+...|++.++..++++|...= ..-+..+|+.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 3566677777665333322 22333566777889999999999999987653 3478889988666
Q ss_pred HHHHhC--------CHHHHHHHH-------HHHHhC------CCCCCHHHHHHHHHHHHhc--CCHhHHHHHHHHhhcC-
Q 008633 207 SFIRAG--------QVYKAIQML-------GRLEDF------GLKFDAESLNVVLWCLCQR--LHVGAASSLFNSMKGK- 262 (558)
Q Consensus 207 ~~~~~g--------~~~~A~~~~-------~~~~~~------g~~~~~~~~~~ll~~~~~~--~~~~~A~~~~~~m~~~- 262 (558)
.+.+.= ..+-+.+.| ++|... .+.|.......++....-. .+..--.++++.-...
T Consensus 176 mlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~y 255 (549)
T PF07079_consen 176 MLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFY 255 (549)
T ss_pred HHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhc
Confidence 555431 111111111 112111 1122222222232222211 1111111222222111
Q ss_pred CCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008633 263 VLFNV-MTYNIVISGWSKLGQVVEMERVLKEIVAEGFS----PDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDT 337 (558)
Q Consensus 263 ~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 337 (558)
+.|+- -....|+..+.+ +.+++..+-+.+....+. -=..++..++....+.++..+|.+.+.-+.........
T Consensus 256 v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~sv 333 (549)
T PF07079_consen 256 VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISV 333 (549)
T ss_pred cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchh
Confidence 22222 122333333333 455555554444332211 12457888888889999999999988877665322111
Q ss_pred H-----HHHHHHHHHHhc----CCHHHHHHHHHHhhhCCCCCCHHHHHHHHH---HHHhcCC-HHHHHHHHHHHHHCCCC
Q 008633 338 N-----AYNAVISNYISV----GDFDECMKYYKGMSSYNCEPNMDTYTRLIS---GLLKSRK-VADALEVFEEMLDRGIV 404 (558)
Q Consensus 338 ~-----~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~---~~~~~g~-~~~A~~~~~~m~~~~~~ 404 (558)
. +-..+-+..+.. -+..+-+.+|+.....++.. ...-.-|+. -+-+.|. -++|+++++...+-. .
T Consensus 334 s~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~ 411 (549)
T PF07079_consen 334 SEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-N 411 (549)
T ss_pred hhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-c
Confidence 0 111222333311 13444556666665543211 111122222 2334454 788999999887742 1
Q ss_pred CCHHHHHH----HHHHHHh---cCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHH--HHcCCChhHHHHHHHHHHHC
Q 008633 405 PSTGTITS----FLEPLCS---YGPPHAAMMMYKKARKVGCKLS----LTAYKLLLRR--LSGFGKCGMLLDLWHEMQES 471 (558)
Q Consensus 405 p~~~~~~~----ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~ 471 (558)
-|...-|. +=.+|.. ......-..+-+-+.+.|+.|- ...-|.|.++ +...|++.++.-.-.-+.+
T Consensus 412 yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~- 490 (549)
T PF07079_consen 412 YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK- 490 (549)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-
Confidence 22222222 2222322 2333444445555566787764 3344555443 5567888888765555554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 008633 472 GYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSK 517 (558)
Q Consensus 472 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 517 (558)
+.|++.+|..+.-++....++++|..++.. ++|+..++..
T Consensus 491 -iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 491 -IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred -hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 478999999999999999999999999984 4677666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.46 E-value=37 Score=34.91 Aligned_cols=350 Identities=9% Similarity=0.068 Sum_probs=199.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 008633 166 YNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFI-RAGQVYKAIQMLGRLEDF-GLK-FDAESLNVVLWC 242 (558)
Q Consensus 166 ~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~-~~g~~~~A~~~~~~~~~~-g~~-~~~~~~~~ll~~ 242 (558)
|-.....=.+.|..+.+..+|++.... ++.+...|...+.-++ ..|+.+.....|+.++.. |.. .+...|...|..
T Consensus 82 W~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~ 160 (577)
T KOG1258|consen 82 WKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEF 160 (577)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHH
Confidence 444444446789999999999998764 6666777766655444 457888888899888753 322 244567778888
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHh---c------CCHHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSK---L------GQVVEMERVLKEIVAE----GFSPDSLTFSFLI 309 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~---~------g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll 309 (558)
-..++++.....+++++.+- ....|+..-.-|.+ . ...+++.++-....+. -..+.......-+
T Consensus 161 en~qks~k~v~~iyeRilei---P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v 237 (577)
T KOG1258|consen 161 ENGQKSWKRVANIYERILEI---PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGV 237 (577)
T ss_pred HhccccHHHHHHHHHHHHhh---hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHH
Confidence 88889999999999999874 33344444333332 2 2334444333222210 0001111111111
Q ss_pred HH-------------------------HHhcCCHHHHHHHHHHHHHCC---C----CCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 310 EG-------------------------LGRAGRIDDAIEVFDTMKEKG---C----GPDTNAYNAVISNYISVGDFDECM 357 (558)
Q Consensus 310 ~~-------------------------~~~~g~~~~a~~~~~~m~~~g---~----~p~~~~~~~li~~~~~~g~~~~A~ 357 (558)
.. +-......+....++.-++.- + .++..+|..-+..-.+.|+.+.+.
T Consensus 238 ~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~ 317 (577)
T KOG1258|consen 238 KDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVF 317 (577)
T ss_pred hhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHH
Confidence 11 111111111222222222211 1 123456777777778888888888
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008633 358 KYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIV--PSTGTITSFLEPLCSYGPPHAAMMMYKKARK 435 (558)
Q Consensus 358 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (558)
-+|+...-- |..=...|-..+.-....|+.+-|..++....+--++ |....+.+.+ +-..|+...|..+++.+..
T Consensus 318 ~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~ 394 (577)
T KOG1258|consen 318 ILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIES 394 (577)
T ss_pred HHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 888877631 1111233444444444458888888777665554322 2233333332 2346799999999998877
Q ss_pred cCCCCCH-HHHHHHHHHHHcCCChhHHH---HHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCCHhHHHHHHHHHHhC
Q 008633 436 VGCKLSL-TAYKLLLRRLSGFGKCGMLL---DLWHEMQESGYPSDGEIYEYVIAGL-----CNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 436 ~~~~~~~-~~~~~li~~~~~~g~~~~A~---~~~~~m~~~~~~p~~~~~~~li~~~-----~~~g~~~~A~~~~~~m~~~ 506 (558)
.- |+. ..-..-+....+.|+.+.+. +++....+. .-+..+...+.--+ .-.++.+.|..++.++.+.
T Consensus 395 e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~ 470 (577)
T KOG1258|consen 395 EY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI 470 (577)
T ss_pred hC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 53 442 22223344566778887777 444444332 22333333333333 2357889999999998875
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 008633 507 GFCPSRLVYSKLSNKLLASNK 527 (558)
Q Consensus 507 g~~p~~~~~~~l~~~~~~~g~ 527 (558)
++++...|..+++.....+.
T Consensus 471 -~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 471 -LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred -CCccHHHHHHHHHHHHhCCc
Confidence 45667888888888777663
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.43 E-value=78 Score=38.54 Aligned_cols=311 Identities=12% Similarity=0.000 Sum_probs=160.2
Q ss_pred HHHHhcCChHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008633 171 KALGRRKFFDFMCNVLSDM----AKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQR 246 (558)
Q Consensus 171 ~~~~~~~~~~~a~~l~~~m----~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 246 (558)
.+=-+.+.+.+|+..++.- .+.. ....-|..+...|+..++++...-+...-.. .|+ ...-|-.....
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEAS 1462 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHhh
Confidence 3445677888888888873 2211 1122334444488888888888777764221 122 22344556778
Q ss_pred CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHH
Q 008633 247 LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFS-FLIEGLGRAGRIDDAIEVF 325 (558)
Q Consensus 247 ~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~a~~~~ 325 (558)
|++..|...|+.+.+..++...+++-++......|.++.+.-..+-.... ..+....++ .=+.+--+.++++.....+
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 99999999999998888877888888888888888888887766555443 222333333 3344446677777766665
Q ss_pred HHHHHCCCCCCHHHHHHH--HHHHHhcC--CHHHHHHHHHHhhhC--------CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 008633 326 DTMKEKGCGPDTNAYNAV--ISNYISVG--DFDECMKYYKGMSSY--------NCEP-NMDTYTRLISGLLKSRKVADAL 392 (558)
Q Consensus 326 ~~m~~~g~~p~~~~~~~l--i~~~~~~g--~~~~A~~~~~~m~~~--------~~~p-~~~~~~~li~~~~~~g~~~~A~ 392 (558)
. .. +..+|... .....+.. +.-.-.+..+.+.+. ++.- -...|..++....-..--...
T Consensus 1542 ~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~- 1613 (2382)
T KOG0890|consen 1542 S---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI- 1613 (2382)
T ss_pred h---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH-
Confidence 5 12 22222222 22222211 111111222222211 1110 012333333333222111111
Q ss_pred HHHHHHHHCCCCCCHH------HHHHHHHHHHhcCChhHHHHHHHH-HHHc----CC-CCCHHHHHHHHHHHHcCCChhH
Q 008633 393 EVFEEMLDRGIVPSTG------TITSFLEPLCSYGPPHAAMMMYKK-ARKV----GC-KLSLTAYKLLLRRLSGFGKCGM 460 (558)
Q Consensus 393 ~~~~~m~~~~~~p~~~------~~~~ll~~~~~~g~~~~a~~~~~~-~~~~----~~-~~~~~~~~~li~~~~~~g~~~~ 460 (558)
+... ++.++.. -|..-+.--....+..+-+-.+++ +... +. .--..+|-...+...++|+++.
T Consensus 1614 ---~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1614 ---EELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred ---HHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 1111 1122211 111111111111111111111111 1111 11 1124667777777777899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 461 LLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 461 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
|...+-...+.+ .| ..+--...-+.+.|+...|+.++++-++.
T Consensus 1689 A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1689 AQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 887776666654 33 35556667778889999999999988865
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.16 E-value=3.1 Score=38.75 Aligned_cols=103 Identities=13% Similarity=0.096 Sum_probs=68.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 008633 157 PNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEG---VNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDA 233 (558)
Q Consensus 157 ~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g---~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 233 (558)
.|.+.++.+-..++.......+++.+...+-+++..- ..++. +-.++++.|.+ -+.++++.++..=+..|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 3555666666677777777777888877777765431 12221 22223333333 3566888887777788888888
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhc
Q 008633 234 ESLNVVLWCLCQRLHVGAASSLFNSMKG 261 (558)
Q Consensus 234 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 261 (558)
.+++.+|+.+.+.+++.+|.++...|..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 8888888888888888888777766644
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.03 E-value=31 Score=33.58 Aligned_cols=65 Identities=11% Similarity=0.123 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 336 DTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEP---NMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
...+|..+...+.+.|.++.|...+..+.+.+... .....-.-...+-..|+..+|+..+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777888888888888888888877643111 223333445556667888888888877766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.01 E-value=18 Score=30.81 Aligned_cols=19 Identities=32% Similarity=0.573 Sum_probs=9.9
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 008633 384 KSRKVADALEVFEEMLDRG 402 (558)
Q Consensus 384 ~~g~~~~A~~~~~~m~~~~ 402 (558)
+.+..++|+.-|.++.+.|
T Consensus 70 ~~~k~d~Alaaf~~lektg 88 (221)
T COG4649 70 QENKTDDALAAFTDLEKTG 88 (221)
T ss_pred HcCCchHHHHHHHHHHhcC
Confidence 3445555555555555544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.01 E-value=0.65 Score=27.49 Aligned_cols=25 Identities=20% Similarity=0.097 Sum_probs=14.5
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHH
Q 008633 263 VLFNVMTYNIVISGWSKLGQVVEME 287 (558)
Q Consensus 263 ~~~~~~~~~~li~~~~~~g~~~~A~ 287 (558)
.|-|..+|+.+...|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3445566666666666666665553
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.55 E-value=1.2 Score=26.29 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHH
Q 008633 512 RLVYSKLSNKLLASNKLESAY 532 (558)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~ 532 (558)
...|..|...|...|++++|+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhc
Confidence 566666666666666666654
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=86.38 E-value=20 Score=36.08 Aligned_cols=209 Identities=14% Similarity=0.086 Sum_probs=96.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCH
Q 008633 174 GRRKFFDFMCNVLSDMAKEGVNPDLET--LSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAE--SLNVVLWCLCQRLHV 249 (558)
Q Consensus 174 ~~~~~~~~a~~l~~~m~~~g~~~~~~t--~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~~~~ 249 (558)
++.|+.+.+ +.+.+.|..|+... ..+.+..++..|+.+- .+.+.+.|..++.. ...+.+...+..|+.
T Consensus 10 ~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 445555443 33334565554332 2334455556676653 34444455544432 122345566677888
Q ss_pred hHHHHHHHHhhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHH
Q 008633 250 GAASSLFNSMKGKV-LFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLT--FSFLIEGLGRAGRIDDAIEVFD 326 (558)
Q Consensus 250 ~~A~~~~~~m~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~ 326 (558)
+.+..+++.-.... ..+..- .+.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+..+
T Consensus 82 ~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L-- 154 (413)
T PHA02875 82 KAVEELLDLGKFADDVFYKDG-MTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL-- 154 (413)
T ss_pred HHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH--
Confidence 77776665432110 001111 1233334455655 34455555666554322 12344555566776544443
Q ss_pred HHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 327 TMKEKGCGPDTN--AYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDT---YTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 327 ~m~~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
.+.|..++.. .-.+.+...+..|+.+-+ +.+.+.|..++... ..+++...+..|+.+ +.+-+.+.
T Consensus 155 --l~~g~~~~~~d~~g~TpL~~A~~~g~~eiv----~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~ 224 (413)
T PHA02875 155 --IDHKACLDIEDCCGCTPLIIAMAKGDIAIC----KMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKR 224 (413)
T ss_pred --HhcCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHC
Confidence 3444433221 111233344555665443 34445554444322 123444344556654 44445556
Q ss_pred CCCCCH
Q 008633 402 GIVPST 407 (558)
Q Consensus 402 ~~~p~~ 407 (558)
|..++.
T Consensus 225 gad~n~ 230 (413)
T PHA02875 225 GADCNI 230 (413)
T ss_pred CcCcch
Confidence 665553
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.17 E-value=51 Score=35.16 Aligned_cols=24 Identities=8% Similarity=0.336 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhh
Q 008633 341 NAVISNYISVGDFDECMKYYKGMS 364 (558)
Q Consensus 341 ~~li~~~~~~g~~~~A~~~~~~m~ 364 (558)
..|+..|...+++.+|..++-...
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhcc
Confidence 347788888888888888777665
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=85.86 E-value=66 Score=36.17 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=27.1
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 449 LRRLSGFGKCGMLLDLWHEMQESGYPSDGE--IYEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 449 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
+.+|..+|++.+|+.+-.++... -|.. +-..|+.-+...++.-+|-+++.+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 44555556666666655555321 1111 11445555566666666666665554
|
|
| >PF14669 Asp_Glu_race_2: Putative aspartate racemase | Back alignment and domain information |
|---|
Probab=85.14 E-value=24 Score=30.54 Aligned_cols=181 Identities=14% Similarity=0.121 Sum_probs=94.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----HHCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Q 008633 158 NVAKDVKSYNVIVKALGRRKFFDFMCNVLSDM----AKEGVNPD----LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGL 229 (558)
Q Consensus 158 ~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m----~~~g~~~~----~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 229 (558)
|...+...+|.++..+.+..-...-++.+-.| ...+...+ ......-+..|-+.|++.+--.+|-.+.. |.
T Consensus 3 Gm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~-gc 81 (233)
T PF14669_consen 3 GMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKM-GC 81 (233)
T ss_pred cccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHh-hc
Confidence 45567788888888876654333333333333 33344333 22333334566666666665555544332 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008633 230 KFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLI 309 (558)
Q Consensus 230 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 309 (558)
+ +..-+..+- + --|..+.++.+++ ..+.|......-++.-..+++.+.+- ..+-.+++
T Consensus 82 e-~~~dlq~~~-~-------~va~~Ltkd~Kdk---~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m 139 (233)
T PF14669_consen 82 E-KFADLQRFC-A-------CVAEALTKDSKDK---PGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLM 139 (233)
T ss_pred C-CHHHHHHHH-H-------HHHHHHHhccccc---CCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHH
Confidence 1 111111000 0 0122233333332 34456666666666655555444332 12234567
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC--------------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 310 EGLGRAGRIDDAIEVFDTMKEKGCG--------------PDTNAYNAVISNYISVGDFDECMKYYK 361 (558)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~m~~~g~~--------------p~~~~~~~li~~~~~~g~~~~A~~~~~ 361 (558)
..|.+.-++.++.++++.|-+..+. +--...|.....+.+.|.+|.|..+++
T Consensus 140 ~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 140 YSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 7788888899999999888765322 122344555666666666666666665
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.76 E-value=12 Score=28.58 Aligned_cols=47 Identities=15% Similarity=0.100 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 460 MLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 460 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
+..+-++.+...++.|++.+..+.+.+|.+.+++..|+++++-...+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444445555566666666666666666666666666666655443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=84.60 E-value=36 Score=32.07 Aligned_cols=74 Identities=15% Similarity=0.119 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008633 441 SLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSN 520 (558)
Q Consensus 441 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 520 (558)
+..+-...+.++.+.|.. .|+..+-...+.+ + .....+.++...|.. +|+..+.++.+. .||..+-...+.
T Consensus 205 ~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~ 275 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAID 275 (280)
T ss_pred ChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHH
Confidence 444444555555555553 3333333333322 1 123455666666664 566666666653 345555555555
Q ss_pred HHH
Q 008633 521 KLL 523 (558)
Q Consensus 521 ~~~ 523 (558)
+|.
T Consensus 276 a~~ 278 (280)
T PRK09687 276 KLK 278 (280)
T ss_pred HHh
Confidence 543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.36 E-value=22 Score=36.57 Aligned_cols=131 Identities=20% Similarity=0.176 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 008633 305 FSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLK 384 (558)
Q Consensus 305 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 384 (558)
.+.+.+.+-+.|..++|+++ .+|.. .-.....+.|+++.|.++..+.. +..-|..|.++..+
T Consensus 617 rt~va~Fle~~g~~e~AL~~---------s~D~d---~rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALEL---------STDPD---QRFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhc---------CCChh---hhhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 34455555566666555543 12221 12234456677777776665543 45567777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 008633 385 SRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDL 464 (558)
Q Consensus 385 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 464 (558)
.+++..|.+.|......+ .|+-.+...|+.+....+-....+.| +. |...-+|...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d~~---------~LlLl~t~~g~~~~l~~la~~~~~~g-~~-----N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARDLG---------SLLLLYTSSGNAEGLAVLASLAKKQG-KN-----NLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcchh---------hhhhhhhhcCChhHHHHHHHHHHhhc-cc-----chHHHHHHHcCCHHHHHHH
Confidence 777777777776654422 34444555566554444444444444 11 2222345556666666666
Q ss_pred HHHH
Q 008633 465 WHEM 468 (558)
Q Consensus 465 ~~~m 468 (558)
+.+-
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 5443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.27 E-value=2.7 Score=24.47 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=10.8
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 480 YEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
|..+...+...|++++|+..+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3444444444444444444444444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.70 E-value=38 Score=31.59 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 008633 305 FSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGM 363 (558)
Q Consensus 305 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 363 (558)
++.....|..+|.+.+|.++.+...... +.+...+-.|+..+...|+--.|.+-++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3344556666677777777666666553 225556666677777777655555555555
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.66 E-value=3 Score=24.18 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=10.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 515 YSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
+..+...+.+.|++++|++.+++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3334444444444444444444433
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=83.64 E-value=72 Score=34.72 Aligned_cols=205 Identities=13% Similarity=0.056 Sum_probs=98.5
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHH-------HHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 008633 348 ISVGDFDECMKYYKGMSSYNCEPNMD-------TYTRLIS-GLLKSRKVADALEVFEEMLDR----GIVPSTGTITSFLE 415 (558)
Q Consensus 348 ~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~li~-~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~ll~ 415 (558)
....++++|..+..++...-..|+.. .++.+-. .....|++++|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45667788877777765432122211 2232221 123457778887777766543 11223344455555
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHH---HH--HHHHHcCCCh--hHHHHHHHHHHHC--CCCC----CHHHHHH
Q 008633 416 PLCSYGPPHAAMMMYKKARKVGCKLSLTAYK---LL--LRRLSGFGKC--GMLLDLWHEMQES--GYPS----DGEIYEY 482 (558)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~l--i~~~~~~g~~--~~A~~~~~~m~~~--~~~p----~~~~~~~ 482 (558)
+..-.|++++|..+.+...+..-.-+...+. .+ ...+...|+. .+.+..+...... +-.| -.-++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 5556788888887777665542222322222 22 1224455632 2223333333211 0011 1223444
Q ss_pred HHHHHHhc-CCHhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhhhc
Q 008633 483 VIAGLCNI-GQLENAVLVMEESLRKGFCPSRL--VYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRLWR 552 (558)
Q Consensus 483 li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 552 (558)
+..++.+. +...+|..-++-.......|-.. .+..|+..+...|+.++|...++++......+.+..+|.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 44444441 22222222222222221111112 223567777788888888888888877666665555553
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.49 E-value=4.4 Score=23.56 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 513 LVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
.+|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57889999999999999999999998854
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.43 E-value=0.42 Score=39.85 Aligned_cols=83 Identities=13% Similarity=0.104 Sum_probs=39.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008633 413 FLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQ 492 (558)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 492 (558)
++..+.+.+.+.....+++.+...+...+....+.++..|++.+..++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34444445555555555555555444444555555555555555555555554411 11122334444455555
Q ss_pred HhHHHHHHHH
Q 008633 493 LENAVLVMEE 502 (558)
Q Consensus 493 ~~~A~~~~~~ 502 (558)
+++|..++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.26 E-value=4.4 Score=23.38 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 478 EIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
..|..+...+...|++++|++.+++.++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788899999999999999999999865
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.13 E-value=13 Score=32.53 Aligned_cols=73 Identities=11% Similarity=0.050 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 459 GMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK---GFCPSRLVYSKLSNKLLASNKLESAY 532 (558)
Q Consensus 459 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~ 532 (558)
++|.+.|-.+...+.--++.....+...|. ..+.++|+.++-++++. +-.+|+..+..|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 566777777766654445555554444444 56777788877777764 33567788888888888888887775
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.12 E-value=3.4 Score=25.28 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 513 LVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
.+++.|...|...|++++|.+++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777777777888888777777654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.02 E-value=3.3 Score=25.37 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008633 478 EIYEYVIAGLCNIGQLENAVLVMEESLR 505 (558)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (558)
.+++.+...|...|++++|..++++.++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4778888888999999999998888764
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.84 E-value=12 Score=28.31 Aligned_cols=45 Identities=16% Similarity=0.333 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 285 EMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMK 329 (558)
Q Consensus 285 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 329 (558)
++.+-+..+....+.|+.....+.+++|.+.+++..|..+++..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444444555555555555555555555555554443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=82.59 E-value=33 Score=34.23 Aligned_cols=121 Identities=13% Similarity=0.104 Sum_probs=71.6
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 244 CQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIE 323 (558)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 323 (558)
...|++-.|-+-+.......+.+..........+...|+++.+...+....+. +.....+..++++...+.|++++|..
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34566555544333333333333333333344455668888887777665442 23455677778888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 008633 324 VFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSY 366 (558)
Q Consensus 324 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 366 (558)
.-+.|....++ +........-..-..|-++++.-.|+++...
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 88877777665 4444433333344556677777777777543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.57 E-value=38 Score=30.76 Aligned_cols=205 Identities=11% Similarity=0.119 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 008633 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLL 383 (558)
Q Consensus 304 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 383 (558)
.|.....+|..+.++++|...+.+..+. .+-+...|. ....++.|.-+.++|.+. .--+..|+--...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3455556677777777777766665432 111221121 122234444444444431 111233445555666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc---C--CCCCHHHHHHHHHHHHcCCCh
Q 008633 384 KSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKV---G--CKLSLTAYKLLLRRLSGFGKC 458 (558)
Q Consensus 384 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~--~~~~~~~~~~li~~~~~~g~~ 458 (558)
.+|..+.|-..+++.-+. ....+++.|+++|++.... + ...-...|...-+.+.+..++
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 666666655555443221 1122233333333332211 0 000112233334445555666
Q ss_pred hHHHHHHHHHH----HCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-C--CCCHHHHHHHHHHHHhcCCHHH
Q 008633 459 GMLLDLWHEMQ----ESGYPSD-GEIYEYVIAGLCNIGQLENAVLVMEESLRKG-F--CPSRLVYSKLSNKLLASNKLES 530 (558)
Q Consensus 459 ~~A~~~~~~m~----~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~--~p~~~~~~~l~~~~~~~g~~~~ 530 (558)
++|-..+.+-. +..--++ ...|-..|-.+....++..|.+.++...+-+ + .-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 65544333221 1111112 1234444555555667777777777644331 1 12245566666555 3566666
Q ss_pred HHHHH
Q 008633 531 AYNLF 535 (558)
Q Consensus 531 A~~~~ 535 (558)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 65554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.44 E-value=27 Score=28.99 Aligned_cols=51 Identities=12% Similarity=-0.027 Sum_probs=24.5
Q ss_pred cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008633 246 RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (558)
.++.+++..+++.|.---|-....-..-...+...|++++|.++|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 455555666655554322212222222223344556666666666666554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.31 E-value=18 Score=31.61 Aligned_cols=94 Identities=19% Similarity=0.117 Sum_probs=64.0
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008633 416 PLCSYGPPHAAMMMYKKARKVGCKLS----LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIG 491 (558)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 491 (558)
-+...|++++|..-|..+++.-.... ...|..-..++.+.+.++.|+.-....++.+ +........-..+|-+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 46778999999998888887532222 2345555567788888888888887777764 212223333345677888
Q ss_pred CHhHHHHHHHHHHhCCCCCCH
Q 008633 492 QLENAVLVMEESLRKGFCPSR 512 (558)
Q Consensus 492 ~~~~A~~~~~~m~~~g~~p~~ 512 (558)
++++|+.-|+++.+. .|..
T Consensus 183 k~eealeDyKki~E~--dPs~ 201 (271)
T KOG4234|consen 183 KYEEALEDYKKILES--DPSR 201 (271)
T ss_pred hHHHHHHHHHHHHHh--Ccch
Confidence 899999999888876 3553
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.95 E-value=34 Score=29.85 Aligned_cols=94 Identities=11% Similarity=0.024 Sum_probs=57.7
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHHH-----HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008633 449 LRRLSGFGKCGMLLDLWHEMQESGYPSDGEIY-----EYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLL 523 (558)
Q Consensus 449 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 523 (558)
...+...|++++|+.-++..... +-| ..+ -.|.......|.+|+|+..++.....+. .......-.+.+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~--t~D-e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ--TKD-ENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc--chh-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 44566777777777777766543 112 122 2234556677888888887776554432 2333445567777
Q ss_pred hcCCHHHHHHHHHHHHHhcCCchh
Q 008633 524 ASNKLESAYNLFRKIKIARQNDYA 547 (558)
Q Consensus 524 ~~g~~~~A~~~~~~m~~~~~~~~~ 547 (558)
..|+-++|+.-|++..+....+..
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 171 AKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred HcCchHHHHHHHHHHHHccCChHH
Confidence 888888888888877776544433
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.74 E-value=11 Score=33.45 Aligned_cols=46 Identities=9% Similarity=-0.093 Sum_probs=18.3
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMER 288 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 288 (558)
+.+.+.+.+|+...++-....|.|...-..++..+|-.|++++|..
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~ 56 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALA 56 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHH
Confidence 3333344444443333332233333444444444444444444443
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=81.66 E-value=78 Score=33.79 Aligned_cols=45 Identities=11% Similarity=0.120 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008633 201 LSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQR 246 (558)
Q Consensus 201 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 246 (558)
.-.+|=.|.++|+.++|.++..+..+. .......+...+..|+..
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 344566677888888888877554432 333445556666666554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 87.2 bits (214), Expect = 4e-18
Identities = 35/223 (15%), Positives = 72/223 (32%), Gaps = 5/223 (2%)
Query: 184 NVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCL 243
+ + +P E L+ ++ + G+ L + L C
Sbjct: 78 CLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCC 137
Query: 244 CQRLHVGAASSLFNSMKGKV----LFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFS 299
+ A L G+ L + YN V+ GW++ G E+ VL + G +
Sbjct: 138 LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197
Query: 300 PDSLTFSFLIEGLGRAGRIDDAIE-VFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMK 358
PD L+++ ++ +GR + IE + M ++G ++S K
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257
Query: 359 YYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR 401
S P ++L+ + ++ +
Sbjct: 258 VKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL 300
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 63.3 bits (152), Expect = 1e-10
Identities = 14/135 (10%), Positives = 35/135 (25%), Gaps = 3/135 (2%)
Query: 299 SPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFD---E 355
SP + L++ +D + A +
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 356 CMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLE 415
+ + G +D Y ++ G + + + V + D G+ P + + L+
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
Query: 416 PLCSYGPPHAAMMMY 430
+ +
Sbjct: 209 CMGRQDQDAGTIERC 223
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.4 bits (129), Expect = 8e-08
Identities = 18/151 (11%), Positives = 49/151 (32%), Gaps = 4/151 (2%)
Query: 370 PNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAA--- 426
P + RL+ + + + + +F + A
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 427 MMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAG 486
++++ R+ L+L Y ++ + G L+ + ++++G D Y +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 487 LCNIGQLENAVL-VMEESLRKGFCPSRLVYS 516
+ Q + +E+ ++G L +
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 48.3 bits (113), Expect = 7e-06
Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 1/126 (0%)
Query: 136 VNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVN 195
+ L +L + + + YN ++ R+ F + VL + G+
Sbjct: 138 LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197
Query: 196 PDLETLSIVMDSFIRAGQVYKAIQ-MLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASS 254
PDL + + + R Q I+ L ++ GLK A V+L + + A
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257
Query: 255 LFNSMK 260
+ +
Sbjct: 258 VKPTFS 263
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 4e-11
Identities = 91/569 (15%), Positives = 174/569 (30%), Gaps = 113/569 (19%)
Query: 9 RTRYPLSSL----SSSFSLFSFSTSVRSNLSYNELLSNQKKNMSSLDEHHVLKELSDLFQ 64
T +L F +R N Y L MS + +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKF-VEEVLRIN--YKFL-------MSPIKTEQRQPSMMTRMY 112
Query: 65 ISSHNSFPNVYKESRSNSVKRIDSSRAVDEFLLPEERLRGVFLQKLKGKG---VIEDALW 121
I + N + +V R+ + + LL + V + + G G V D
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 122 NVNVDLSLDVVGKV--VNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFF 179
+ V +D K+ +N N + VL + + + + S + + R
Sbjct: 173 SYKVQCKMD--FKIFWLNLKNCNSPETVLEMLQKLLY-QIDPNWTSRSDHSSNIKLR--I 227
Query: 180 DFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239
+ L + K + L +V+ + ++ + + A F L
Sbjct: 228 HSIQAELRRLLKSKPYEN--CL-LVLLN-VQNAKAWNA---------FNLS--------- 265
Query: 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFS 299
C+ L + + + T +I + S E++ +L + +
Sbjct: 266 ----CKILLTTRFKQVTDFLSAAT-----TTHISLDHHSMTLTPDEVKSLLLKYL--DCR 314
Query: 300 PDSL------TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDF 353
P L T + + I D + +D K + + +I + ++V +
Sbjct: 315 PQDLPREVLTTNPRRLSIIAE--SIRDGLATWDNWKH----VNCDKLTTIIESSLNVLEP 368
Query: 354 DECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIV---PSTGTI 410
E K + +S + P+ T L+S + +D + V ++ +V P TI
Sbjct: 369 AEYRKMFDRLSVF--PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 411 T---SFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHE 467
+ +LE Y R + + Y + D
Sbjct: 427 SIPSIYLELKVK------LENEYALHRSI-----VDHYNIPKT-----------FDSDDL 464
Query: 468 MQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNK 527
+ D Y ++ L NI E L R F R + K+ + A N
Sbjct: 465 IPP---YLDQYFYSHIGHHLKNIEHPERMTL-----FRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 528 LESAYNLFRKIKIARQ----ND--YARRL 550
S N +++K + ND Y R +
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLV 545
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 2e-07
Identities = 45/269 (16%), Positives = 87/269 (32%), Gaps = 56/269 (20%)
Query: 320 DAIEVF--DTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTR 377
D + VF + C + +++S + D + + + T
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSK----EEIDHIIM----------SKDAVSGTL 65
Query: 378 LISGLLKSRK-------VADALE-----VFEEMLDRGIVPSTGTIT--SFLEPLCSYGPP 423
+ L S++ V + L + + PS T + L +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 424 HAAMM-----MYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLW--HEMQESGYPSD 476
A Y K R+ +L +L+ + G GK + LD+ +++Q D
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKN-VLIDGVLGSGKTWVALDVCLSYKVQCK---MD 181
Query: 477 GEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFR 536
+I+ ++ CN VL M + L P+ S S+ + ++ S R
Sbjct: 182 FKIF-WLNLKNCNS---PETVLEMLQKLLYQIDPNWTSRSDHSSNI--KLRIHSIQAELR 235
Query: 537 KIKIARQNDYARRL------WRSKGW-HF 558
++ + Y L +K W F
Sbjct: 236 --RLLKSKPYENCLLVLLNVQNAKAWNAF 262
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 5e-07
Identities = 65/467 (13%), Positives = 135/467 (28%), Gaps = 167/467 (35%)
Query: 165 SYNVIVKALGRRKFF-DFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGR 223
Y I+ F +F C + DM K I + + I
Sbjct: 17 QYKDILSVF-EDAFVDNFDCKDVQDMPKS----------------ILSKEEIDHI----- 54
Query: 224 LEDFGLKFDAESLNVVLWCLCQ-----------------------RLHV-----GAASSL 255
K + W L + + +
Sbjct: 55 ---IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 256 FNSMKGKVLFN----VMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEG 311
+ + + L+N YN+ S+L +++ + L E+ LI+G
Sbjct: 112 YIEQRDR-LYNDNQVFAKYNV-----SRLQPYLKLRQALLELRPAKN--------VLIDG 157
Query: 312 LGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVG---DFDECMK-----YYKGM 363
+ +G+ A++V + K + C D + ++++ + ++ Y+
Sbjct: 158 VLGSGKTWVALDVCLSYKVQ-CKMDFKIF------WLNLKNCNSPETVLEMLQKLLYQID 210
Query: 364 SSYNCEPNMDTYTRL--------ISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLE 415
++ + + +L + LLKS+ + L V L V + +F
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV----LLN--VQNAKAWNAF-- 262
Query: 416 PLCSYGPPHAAMMMYKKARKVGCK-LSLTAYKLLLRRLSGFGKC---------GM----- 460
+ CK L T +K + LS +
Sbjct: 263 -------------------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 461 --LLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSR------ 512
LL + + + P E+ + ++ ES+R G +
Sbjct: 304 KSLLLKYLDCRPQDLPR--EV--------LTTNPR--RLSIIAESIRDG--LATWDNWKH 349
Query: 513 LVYSKLSNKLLAS-NKLESAY--NLFRKIKIARQN-----DYARRLW 551
+ KL+ + +S N LE A +F ++ + + +W
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 558 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.79 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.67 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.64 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.61 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.56 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.56 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.54 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.5 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.49 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.47 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.43 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.43 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.41 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.4 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.39 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.39 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.39 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.35 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.33 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.31 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.31 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.3 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.3 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.23 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.2 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.18 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.16 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.14 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.14 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.12 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.03 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.02 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.02 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.99 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.99 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.97 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.94 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.93 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.93 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.89 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.88 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.86 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.86 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.85 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.83 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.82 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.81 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.81 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.8 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.8 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.8 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.8 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.79 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.78 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.77 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.76 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.75 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.7 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.68 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.68 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.68 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.66 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.66 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.66 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.63 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.62 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.61 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.59 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.54 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.52 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.51 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.51 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.5 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.5 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.48 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.47 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.47 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.47 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.46 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.46 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.44 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.43 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.43 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.43 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.41 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.41 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.39 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.38 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.36 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.36 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.34 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.33 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.32 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.31 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.24 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.23 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.21 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.21 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.2 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.2 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.19 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.18 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.17 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.17 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.16 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.15 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.14 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.13 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.11 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.08 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.08 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.08 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.08 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.08 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.07 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.06 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.05 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.98 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.94 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.92 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.87 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.86 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.86 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.84 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.82 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.8 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.79 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.78 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.78 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.75 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.74 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.73 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.69 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.68 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.62 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.61 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.61 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.59 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.58 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.58 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.54 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.52 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.51 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.47 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.39 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.34 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.33 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.27 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.22 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.09 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.07 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.96 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.71 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.7 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.54 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.44 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.39 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.34 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.15 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.08 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.06 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.01 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.86 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.84 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.8 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.2 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.17 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.11 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.06 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.84 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.75 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.69 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.39 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.02 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.38 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.02 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.54 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 92.01 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.72 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 91.53 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 90.87 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 90.71 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.49 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.2 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.17 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.04 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.69 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.5 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.25 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.06 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.27 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.3 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 85.48 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.38 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 84.44 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 83.93 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 83.19 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 82.69 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 82.24 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.49 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-35 Score=307.02 Aligned_cols=395 Identities=8% Similarity=-0.014 Sum_probs=339.9
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHH
Q 008633 144 EAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKE---------------GVNPDLETLSIVMDSF 208 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~---------------g~~~~~~t~~~li~~~ 208 (558)
+.|..+|+-+.. .+++..+|+.++..|.+.|++++|.++|+++... |...+..+|..++.+|
T Consensus 134 ~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (597)
T 2xpi_A 134 ARAKCLLTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY 210 (597)
T ss_dssp HHHHHHHHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHH
Confidence 455666654432 3678999999999999999999999999954222 2234688999999999
Q ss_pred HHhCCHHHHHHHHHHHHhCCCCCCHHHHHH--------------------------------------HHHHHHhcCCHh
Q 008633 209 IRAGQVYKAIQMLGRLEDFGLKFDAESLNV--------------------------------------VLWCLCQRLHVG 250 (558)
Q Consensus 209 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~--------------------------------------ll~~~~~~~~~~ 250 (558)
.+.|++++|+++|++|.+.+.. +...+.. ++..|.+.|+++
T Consensus 211 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 289 (597)
T 2xpi_A 211 TNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELR 289 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHH
Confidence 9999999999999999876532 3333332 355667889999
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 251 AASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKE 330 (558)
Q Consensus 251 ~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 330 (558)
+|.++|+++... +++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+++.++.++.+.|++++|.++++++.+
T Consensus 290 ~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 367 (597)
T 2xpi_A 290 RAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367 (597)
T ss_dssp HHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999998764 6799999999999999999999999999999875 33778899999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008633 331 KGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTI 410 (558)
Q Consensus 331 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 410 (558)
.. +.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++
T Consensus 368 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 444 (597)
T 2xpi_A 368 RH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPY 444 (597)
T ss_dssp HC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHH
T ss_pred hC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHH
Confidence 64 3478899999999999999999999999998753 4568899999999999999999999999999874 4577899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC----CCCCC--HHHHHHHH
Q 008633 411 TSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQES----GYPSD--GEIYEYVI 484 (558)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li 484 (558)
..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++
T Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 523 (597)
T 2xpi_A 445 LFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG 523 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 999999999999999999999998865 457899999999999999999999999999865 66787 78999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhhh
Q 008633 485 AGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRLW 551 (558)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 551 (558)
.+|.+.|++++|.++++++.+.+ +.+..+|..++.+|.+.|++++|.+.++++.+. .|+....|
T Consensus 524 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~ 587 (597)
T 2xpi_A 524 HAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMAS 587 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHH
Confidence 99999999999999999999875 447899999999999999999999999999864 45544444
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-34 Score=300.28 Aligned_cols=394 Identities=10% Similarity=0.029 Sum_probs=333.4
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008633 144 EAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGR 223 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~ 223 (558)
+.|...|+.+.. ..|+..+++.++.+|.+.|++++|..+|+.+... .++..++..++.+|.+.|++++|.++|++
T Consensus 101 ~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 175 (597)
T 2xpi_A 101 KCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGE 175 (597)
T ss_dssp HHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCS
T ss_pred hHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 556666665553 3467788999999999999999999999988643 57888999999999999999999999985
Q ss_pred HHh-C--------------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHH---------------
Q 008633 224 LED-F--------------GLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIV--------------- 273 (558)
Q Consensus 224 ~~~-~--------------g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l--------------- 273 (558)
+.. . |.+.+..+|+.++.+|.+.|++++|.++|++|....+.+...+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 255 (597)
T 2xpi_A 176 TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLV 255 (597)
T ss_dssp SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHH
T ss_pred cCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHH
Confidence 332 2 2344678899999999999999999999999876544455544433
Q ss_pred -----------------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 274 -----------------------ISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKE 330 (558)
Q Consensus 274 -----------------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 330 (558)
+..|.+.|++++|.++|+++.+. .++..+++.++.+|.+.|++++|.++|+++.+
T Consensus 256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 333 (597)
T 2xpi_A 256 LKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333 (597)
T ss_dssp HHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 55566788899999999988765 57899999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008633 331 KGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTI 410 (558)
Q Consensus 331 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 410 (558)
.+.. +..+++.++.+|.+.|++++|.++++++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|
T Consensus 334 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 410 (597)
T 2xpi_A 334 IDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAW 410 (597)
T ss_dssp HCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred cCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHH
Confidence 7644 77789999999999999999999999998654 5678899999999999999999999999998753 3467899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 411 TSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNI 490 (558)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 490 (558)
+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.
T Consensus 411 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 488 (597)
T 2xpi_A 411 IGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNK 488 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHh
Confidence 999999999999999999999998865 4578899999999999999999999999999764 55788999999999999
Q ss_pred CCHhHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhhh
Q 008633 491 GQLENAVLVMEESLRK----GFCPS--RLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRLW 551 (558)
Q Consensus 491 g~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 551 (558)
|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.. |+....|
T Consensus 489 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~ 553 (597)
T 2xpi_A 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVH 553 (597)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHH
Confidence 9999999999999876 66787 7899999999999999999999999998754 4444444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=279.19 Aligned_cols=212 Identities=13% Similarity=0.165 Sum_probs=105.9
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 287 ERVLKEIVAEGFSPDS-LTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 287 ~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
..+.+++.+.+..+.. ..++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------- 80 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------- 80 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS---------
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh---------
Confidence 3344444444433322 234455555555555555555555555555555555555555555544321000
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 008633 366 YNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAY 445 (558)
Q Consensus 366 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 445 (558)
.+.+.+++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 81 -----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 143 (501)
T 4g26_A 81 -----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY 143 (501)
T ss_dssp -----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred -----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence 001123445555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008633 446 KLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLA 524 (558)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 524 (558)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|..
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555555555544
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.98 E-value=5.6e-31 Score=267.75 Aligned_cols=186 Identities=15% Similarity=0.254 Sum_probs=112.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHCCCCCCHHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGR---------IDDAIEVFDTMKEKGCGPDTNA 339 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---------~~~a~~~~~~m~~~g~~p~~~~ 339 (558)
.++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. +++|.++|++|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3555556666666666666666666666666666666666666554432 4556666666666666666666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008633 340 YNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCS 419 (558)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 419 (558)
|++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 008633 420 YGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSG 454 (558)
Q Consensus 420 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 454 (558)
.|+.++|.+++++|.+.+..|+..||+.++..|+.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666555554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-27 Score=236.40 Aligned_cols=374 Identities=12% Similarity=0.044 Sum_probs=243.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 170 VKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHV 249 (558)
Q Consensus 170 i~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 249 (558)
...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..+|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 344556677777777777666542 2345556666666667777777777776666543 34566677777777777777
Q ss_pred hHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 250 GAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMK 329 (558)
Q Consensus 250 ~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 329 (558)
++|.+.|+++....|.+..+|..+..++.+.|++++|.+.|+++.+.. +-+...+..+...+...|++++|.+.|+++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777777665555556667777777777777777777777776643 1133455556666666777777777777776
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 008633 330 EKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGT 409 (558)
Q Consensus 330 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 409 (558)
+.... +..+|..+...|.+.|++++|.+.|+++.+.+ +.+...|..+...+...|++++|...+++..+.. +.+..+
T Consensus 163 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 163 ETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 65332 55667777777777777777777777776643 3345666667777777777777777777666542 223556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008633 410 ITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCN 489 (558)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 489 (558)
+..+...+...|++++|...++++.+.+ +.+..+|..+...+.+.|++++|.+.++++.+.. +.+..+|..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 6666667777777777777777776643 3345667777777777777777777777776643 4566677777777777
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhhhccc
Q 008633 490 IGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRLWRSK 554 (558)
Q Consensus 490 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 554 (558)
.|++++|...++++++.. +.+..++..+..+|.+.|++++|.+.++++.+ ..|+....|...
T Consensus 318 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~l 379 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 379 (388)
T ss_dssp TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhH
Confidence 777777777777776542 23366677777777777777777777777763 445544444433
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-25 Score=222.09 Aligned_cols=358 Identities=14% Similarity=0.062 Sum_probs=316.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
+.+...+..+...+.+.|++++|...++...+.. +.+..+|..+...+.+.|++++|++.|+++.+.. +.+..+|..+
T Consensus 30 p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 107 (388)
T 1w3b_A 30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINL 107 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHH
Confidence 3567788888899999999999999999988764 5688999999999999999999999999998764 3356789999
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRID 319 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 319 (558)
..++.+.|++++|.+.|+++....|.+...+..+...+...|++++|.+.|+++.+.. +-+..+|..+...+.+.|+++
T Consensus 108 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999987667778889999999999999999999999999864 335788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 320 DAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 320 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
+|...|+++.+.+.. +...|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|.+.|+++.
T Consensus 187 ~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 187 LAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999987654 67889999999999999999999999998763 4467899999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH
Q 008633 400 DRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEI 479 (558)
Q Consensus 400 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 479 (558)
+.+ +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..+
T Consensus 265 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 341 (388)
T 1w3b_A 265 ELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAA 341 (388)
T ss_dssp HTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHH
T ss_pred hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 864 3356788899999999999999999999998864 6678999999999999999999999999998763 556789
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 008633 480 YEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNK 527 (558)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 527 (558)
+..+..++.+.|++++|...++++++. .|+ ...|..+...+...|+
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 342 HSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999999999975 454 7788888888776653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-23 Score=215.43 Aligned_cols=278 Identities=9% Similarity=-0.070 Sum_probs=228.5
Q ss_pred hhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 267 VMTYNIVISGWSK---LGQVVEMERVLKEIVA-----EGF--------SPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKE 330 (558)
Q Consensus 267 ~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 330 (558)
...+......+.. .|++++|..+|+++.+ ... +.+..++..+...+...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444444454554 8999999999999988 311 12356788888999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008633 331 KGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTI 410 (558)
Q Consensus 331 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 410 (558)
.... ...+..+..+|...|++++|.+.++++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+
T Consensus 266 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 341 (514)
T 2gw1_A 266 LFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPY 341 (514)
T ss_dssp HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHH
T ss_pred hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHH
Confidence 7644 8889999999999999999999999998764 4577889999999999999999999999999864 3355678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHH
Q 008633 411 TSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGY-PSD----GEIYEYVIA 485 (558)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~ 485 (558)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .++ ...|..+..
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 888888999999999999999998764 34567888999999999999999999999875321 112 448899999
Q ss_pred HHHh---cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhhhc
Q 008633 486 GLCN---IGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRLWR 552 (558)
Q Consensus 486 ~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 552 (558)
.+.. .|++++|...++++.+.. +.+..++..+...|.+.|++++|.+.+++..+. .|+....|.
T Consensus 421 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~ 487 (514)
T 2gw1_A 421 LLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEKLQ 487 (514)
T ss_dssp HHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHHHH
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHHHH
Confidence 9999 999999999999998763 345788999999999999999999999999864 445444443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-22 Score=204.15 Aligned_cols=334 Identities=12% Similarity=0.069 Sum_probs=268.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
+.+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+...+...|++++|++.++++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 3567889999999999999999999999998763 4578899999999999999999999999999875 3368899999
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCCh---hhHHHHHH------------HHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNV---MTYNIVIS------------GWSKLGQVVEMERVLKEIVAEGFSPDSLT 304 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~li~------------~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 304 (558)
..+|.+.|++++|.+.|+++....+.+. ..+..++. .+.+.|++++|...|+++.+.. +.+..+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 9999999999999999999988766666 77766644 4888999999999999988764 346788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH------
Q 008633 305 FSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRL------ 378 (558)
Q Consensus 305 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l------ 378 (558)
+..+..++.+.|++++|.++++++.+... .+..++..+..+|...|++++|.+.|+++.+.. +.+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHH
Confidence 88899999999999999999999887643 367888999999999999999999999988653 3344445444
Q ss_pred ------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 008633 379 ------ISGLLKSRKVADALEVFEEMLDRGIVPS-----TGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKL 447 (558)
Q Consensus 379 ------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 447 (558)
...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|+..++++.+.. +.+...|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 77888889999999999988874 344 3467777888888899999999998887754 446788888
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHhcC-----CHhHHHHHHHH
Q 008633 448 LLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAG------------LCNIG-----QLENAVLVMEE 502 (558)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~------------~~~~g-----~~~~A~~~~~~ 502 (558)
+..+|...|++++|...++++.+.. +-+...+..+..+ |...| +.+++.+.+++
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 8888999999999999999888753 3345566655533 22333 45666777765
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.8e-22 Score=199.62 Aligned_cols=334 Identities=14% Similarity=0.060 Sum_probs=279.6
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHH
Q 008633 195 NPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVI 274 (558)
Q Consensus 195 ~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li 274 (558)
+.+...+..+...+.+.|++++|+++|+++.+.. +.+..++..+..+|...|++++|...|+++....|.+..+|..++
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3467789999999999999999999999998764 447889999999999999999999999999877777899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 008633 275 SGWSKLGQVVEMERVLKEIVAEGFSPDS----LTFSFL------------IEGLGRAGRIDDAIEVFDTMKEKGCGPDTN 338 (558)
Q Consensus 275 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 338 (558)
..|.+.|++++|...|+++.+.. |+. ..+..+ ...+...|++++|...++++.+.... +..
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 178 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAE 178 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChH
Confidence 99999999999999999999764 443 455544 44488999999999999999987543 788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----
Q 008633 339 AYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSF----- 413 (558)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l----- 413 (558)
++..+..+|.+.|++++|.++|+++.+.. +.+..+|..+...|...|++++|...|+++.+.. +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 99999999999999999999999998754 5678999999999999999999999999998753 2233444444
Q ss_pred -------HHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 008633 414 -------LEPLCSYGPPHAAMMMYKKARKVGCKLS----LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEY 482 (558)
Q Consensus 414 -------l~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 482 (558)
...+...|++++|...++++.+.... + ...|..+..++.+.|++++|+..++++.+.. +.+...|..
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 77888999999999999999885421 2 4578889999999999999999999998753 457889999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHH------------HHhcC-----CHHHHHHHHHHH
Q 008633 483 VIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNK------------LLASN-----KLESAYNLFRKI 538 (558)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~m 538 (558)
+..+|...|++++|...++++++. .|+ ..++..+..+ |...| ..+++.+.++++
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999999975 454 6666666633 33344 556677777763
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-20 Score=194.85 Aligned_cols=357 Identities=11% Similarity=0.037 Sum_probs=297.5
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008633 144 EAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGR 223 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~ 223 (558)
+.|...|+.+.... |+..+|..+..++.+.|++++|...++++.+.+ +.+..++..+..++.+.|++++|.+.|++
T Consensus 23 ~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 98 (514)
T 2gw1_A 23 DDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSV 98 (514)
T ss_dssp HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56666666666543 689999999999999999999999999999875 45778999999999999999999999999
Q ss_pred HHhCCCCC------------------------------------------------------------------------
Q 008633 224 LEDFGLKF------------------------------------------------------------------------ 231 (558)
Q Consensus 224 ~~~~g~~~------------------------------------------------------------------------ 231 (558)
+.+.+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (514)
T 2gw1_A 99 LSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178 (514)
T ss_dssp HHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCS
T ss_pred HHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHH
Confidence 87765210
Q ss_pred ------CHHHHHHHHHHHHh---cCCHhHHHHHHHHhhc-----C--C-------CCChhhHHHHHHHHHhcCCHHHHHH
Q 008633 232 ------DAESLNVVLWCLCQ---RLHVGAASSLFNSMKG-----K--V-------LFNVMTYNIVISGWSKLGQVVEMER 288 (558)
Q Consensus 232 ------~~~~~~~ll~~~~~---~~~~~~A~~~~~~m~~-----~--~-------~~~~~~~~~li~~~~~~g~~~~A~~ 288 (558)
+...+..+...+.. .|++++|...|+++.. . . +.+..+|..+...+...|++++|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 258 (514)
T 2gw1_A 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHE 258 (514)
T ss_dssp SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 12333333333443 8999999999998865 2 1 3346788999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 008633 289 VLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNC 368 (558)
Q Consensus 289 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 368 (558)
.++++.+.. |+...+..+...+...|++++|.+.++.+.+.... +..++..+...|...|++++|...|+++.+..
T Consensus 259 ~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 334 (514)
T 2gw1_A 259 DIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD- 334 (514)
T ss_dssp HHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-
T ss_pred HHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-
Confidence 999999875 34888999999999999999999999999887544 67789999999999999999999999998865
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HH
Q 008633 369 EPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGC-KLS----LT 443 (558)
Q Consensus 369 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~ 443 (558)
+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .++ ..
T Consensus 335 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 413 (514)
T 2gw1_A 335 PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIA 413 (514)
T ss_dssp SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHH
Confidence 4567889999999999999999999999998763 33457788888899999999999999999876421 122 44
Q ss_pred HHHHHHHHHHc---CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH
Q 008633 444 AYKLLLRRLSG---FGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSR 512 (558)
Q Consensus 444 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 512 (558)
.+..+...+.. .|++++|...++.+.+.. +.+..++..+...+.+.|++++|...++++.+. .|+.
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 88899999999 999999999999998764 456788999999999999999999999999976 4663
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.6e-20 Score=191.06 Aligned_cols=369 Identities=11% Similarity=0.023 Sum_probs=258.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
.+..+|..+...+.+.|++++|+..++++.+.. +.+..++..+...+...|++++|++.|+. .... |+ .....+
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~--~~--~~~~~~ 130 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSV-LSLN--GD--FDGASI 130 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH-HC--------------
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHH-HhcC--CC--CChHHH
Confidence 456666666666666666666666666666553 23556666666666666666666666642 2211 11 111122
Q ss_pred HHHHhcCCHhHHHHHHHHhhcC-------CCCChh------------------------------hHHHHHHHHHh----
Q 008633 241 WCLCQRLHVGAASSLFNSMKGK-------VLFNVM------------------------------TYNIVISGWSK---- 279 (558)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~-------~~~~~~------------------------------~~~~li~~~~~---- 279 (558)
..+...+....|...++.+... ..|+.. ....+...+..
T Consensus 131 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 210 (537)
T 3fp2_A 131 EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEG 210 (537)
T ss_dssp -CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhh
Confidence 3333344444555555554321 011111 12222222211
Q ss_pred ----cCCHHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008633 280 ----LGQVVEMERVLKEIVAEGFSPD--------SLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNY 347 (558)
Q Consensus 280 ----~g~~~~A~~~~~~m~~~g~~p~--------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 347 (558)
.|++++|..+++++.+.. |+ ..++..+...+...|++++|.+.++.+.+.. |+...+..+...|
T Consensus 211 ~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 286 (537)
T 3fp2_A 211 YLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTL 286 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHH
Confidence 247889999999988753 33 2356667778888999999999999998874 4578888899999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 008633 348 ISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAM 427 (558)
Q Consensus 348 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 427 (558)
...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 287 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 287 ADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp CCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998764 4567889999999999999999999999998864 234567788888899999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CC
Q 008633 428 MMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESG-----YPSDGEIYEYVIAGLCNI----------GQ 492 (558)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~----------g~ 492 (558)
..++++.+.. +.+...+..+...+...|++++|...++++.+.. .......+......+... |+
T Consensus 365 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 443 (537)
T 3fp2_A 365 AFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK 443 (537)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH
Confidence 9999998864 4456788889999999999999999999887532 111223345556677777 99
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 008633 493 LENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQ 543 (558)
Q Consensus 493 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 543 (558)
+++|...++++.+.. +.+..++..+..+|.+.|++++|.+.+++..+...
T Consensus 444 ~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 444 FNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999999999998763 34578899999999999999999999999886543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-18 Score=170.28 Aligned_cols=328 Identities=11% Similarity=0.002 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC 242 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 242 (558)
+..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|++.++++.+.. +.+...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4456666666666666666666666666543 2345666666666666666666666666666543 2244556666666
Q ss_pred HHhcCCHhHHHHHHHHhhcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVL---FNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRID 319 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 319 (558)
+...|++++|...|++.....+ .+...+..+...+. ...+..+...+...|+++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 6666666666666666655433 33333333321100 001122245566667777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 320 DAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 320 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
+|.+.++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...+++..
T Consensus 138 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 138 AAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777776665432 55666667777777777777777777776553 4456666777777777777777777777766
Q ss_pred HCCCCCCHHHHH------------HHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCChhHHHH
Q 008633 400 DRGIVPSTGTIT------------SFLEPLCSYGPPHAAMMMYKKARKVGCKLSL----TAYKLLLRRLSGFGKCGMLLD 463 (558)
Q Consensus 400 ~~~~~p~~~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~ 463 (558)
+.. +.+...+. .+...+...|++++|...++++.+.... +. ..+..+...+...|++++|..
T Consensus 216 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 542 11222221 1244466677777777777776664321 22 234456667777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 008633 464 LWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKL 522 (558)
Q Consensus 464 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~ 522 (558)
.+++..+.. +.+..+|..+...+...|++++|...++++++. .|+ ...+..+..+.
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 294 ICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 777777642 346667777777777777777777777777755 344 44555554443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-18 Score=169.64 Aligned_cols=314 Identities=10% Similarity=0.024 Sum_probs=203.6
Q ss_pred hHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 008633 143 GEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLG 222 (558)
Q Consensus 143 ~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~ 222 (558)
.+.|..+|+.+.... +.+..+|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++
T Consensus 19 ~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 95 (359)
T 3ieg_A 19 LADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFK 95 (359)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHH
Confidence 356676777666532 3578899999999999999999999999998864 3477899999999999999999999999
Q ss_pred HHHhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008633 223 RLEDFGLK--FDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSP 300 (558)
Q Consensus 223 ~~~~~g~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 300 (558)
++.+.... .+...+..+...+. ...+..+...+...|++++|...++++.+.. +.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~~----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 152 (359)
T 3ieg_A 96 KVLKSNPSEQEEKEAESQLVKADE----------------------MQRLRSQALDAFDGADYTAAITFLDKILEVC-VW 152 (359)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHhcCCcccChHHHHHHHHHHHH----------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 99986420 23344444421110 1123334445555566666666666555542 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH----
Q 008633 301 DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYT---- 376 (558)
Q Consensus 301 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~---- 376 (558)
+...+..+...+...|++++|...++++.+.... +..++..+...|...|++++|.+.|++..+.. +.+...+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~ 230 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ 230 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHH
Confidence 4455555555666666666666666665554322 45556666666666666666666666655432 22222222
Q ss_pred --------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 008633 377 --------RLISGLLKSRKVADALEVFEEMLDRGIVPST----GTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTA 444 (558)
Q Consensus 377 --------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 444 (558)
.+...+.+.|++++|...++++.+.... +. ..+..+...+...|++++|...++++.+.. +.+..+
T Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 308 (359)
T 3ieg_A 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNA 308 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHH
Confidence 2355677778888888888877765321 22 223445667777888888888888877753 446777
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008633 445 YKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGL 487 (558)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 487 (558)
+..+...+...|++++|.+.|+++.+.. +-+...+..+..+.
T Consensus 309 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 309 LKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 8888888888888888888888888753 33455555555444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.2e-18 Score=175.62 Aligned_cols=351 Identities=14% Similarity=0.100 Sum_probs=267.1
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008633 144 EAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGR 223 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~ 223 (558)
+.|...++-+.... +.+..+|..+...+...|++++|...|+.+.. .|+. ....+..+...+....|...++.
T Consensus 76 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~a~~~~~~ 148 (537)
T 3fp2_A 76 EKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVLSL---NGDF--DGASIEPMLERNLNKQAMKVLNE 148 (537)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---CCCC--ChHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666555432 45788999999999999999999999974422 2222 22234455566667788888888
Q ss_pred HHhCC------CCCCHH------------------------------HHHHHHHHHHh--------cCCHhHHHHHHHHh
Q 008633 224 LEDFG------LKFDAE------------------------------SLNVVLWCLCQ--------RLHVGAASSLFNSM 259 (558)
Q Consensus 224 ~~~~g------~~~~~~------------------------------~~~~ll~~~~~--------~~~~~~A~~~~~~m 259 (558)
+.... ..|+.. ....+...+.. .|++++|..+|+++
T Consensus 149 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 149 NLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp HCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 76531 112211 12222222211 24789999999999
Q ss_pred hcCCCCChh-------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008633 260 KGKVLFNVM-------TYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKG 332 (558)
Q Consensus 260 ~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 332 (558)
....|.+.. +|..+...+...|++++|...+++..+. .|+...+..+...+...|++++|.+.++++.+..
T Consensus 229 l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 306 (537)
T 3fp2_A 229 LSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN 306 (537)
T ss_dssp HC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred HHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence 876665543 5777778889999999999999999986 4668888899999999999999999999998875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008633 333 CGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITS 412 (558)
Q Consensus 333 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 412 (558)
.. +..++..+...|...|++++|.+.|+++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..
T Consensus 307 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 383 (537)
T 3fp2_A 307 PE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTF 383 (537)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHH
T ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 44 78899999999999999999999999998764 4457889999999999999999999999998864 344567888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHcC----------CChhHHHHHHHHHHHCCCCCCH
Q 008633 413 FLEPLCSYGPPHAAMMMYKKARKVG-----CKLSLTAYKLLLRRLSGF----------GKCGMLLDLWHEMQESGYPSDG 477 (558)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~ 477 (558)
+...+...|++++|...++++.+.. .......+..+...+... |++++|...++++.+.. +.+.
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~ 462 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSE 462 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCH
Confidence 8899999999999999999987642 112233344555667777 99999999999998764 4577
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 008633 478 EIYEYVIAGLCNIGQLENAVLVMEESLRKG 507 (558)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 507 (558)
..+..+...+...|++++|...++++++..
T Consensus 463 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 463 QAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-16 Score=158.93 Aligned_cols=355 Identities=11% Similarity=0.052 Sum_probs=291.9
Q ss_pred CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhCCCCCC
Q 008633 161 KDVKSYNVIVKALGR----RKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIR----AGQVYKAIQMLGRLEDFGLKFD 232 (558)
Q Consensus 161 ~~~~~~~~li~~~~~----~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~~~ 232 (558)
.+..++..+...|.. .+++++|+..|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 466777778877877 889999999999988875 67788888888888 899999999999988865 6
Q ss_pred HHHHHHHHHHHHh----cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 008633 233 AESLNVVLWCLCQ----RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSK----LGQVVEMERVLKEIVAEGFSPDSLT 304 (558)
Q Consensus 233 ~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 304 (558)
...+..|...|.. .+++++|...|++.... -+...+..|...|.. .+++++|.+.|++..+.| +...
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 6777788888888 78999999999987543 267788888888887 789999999999988875 6777
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 008633 305 FSFLIEGLGR----AGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYIS----VGDFDECMKYYKGMSSYNCEPNMDTYT 376 (558)
Q Consensus 305 ~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~ 376 (558)
+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|.++|++..+.| +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 8888888887 889999999999988875 56677888888886 789999999999988754 456677
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHH
Q 008633 377 RLISGLLK----SRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSY-----GPPHAAMMMYKKARKVGCKLSLTAYKL 447 (558)
Q Consensus 377 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~ 447 (558)
.+...|.. .++.++|+..|++..+.| +...+..+...|... ++.++|...+++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 77777777 889999999999988765 445556666667666 89999999999988875 4567777
Q ss_pred HHHHHHcCC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008633 448 LLRRLSGFG---KCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCN----IGQLENAVLVMEESLRKGFCPSRLVYSKLSN 520 (558)
Q Consensus 448 li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 520 (558)
+...|...| +.++|++.|++..+.| +...+..+...|.. .+++++|...+++..+.| +...+..|..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777766 7889999999998864 67788888888888 889999999999998875 4778888999
Q ss_pred HHHh----cCCHHHHHHHHHHHHHhcCC
Q 008633 521 KLLA----SNKLESAYNLFRKIKIARQN 544 (558)
Q Consensus 521 ~~~~----~g~~~~A~~~~~~m~~~~~~ 544 (558)
.|.+ .++.++|.+.+++..+.+..
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 9988 89999999999999887744
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-18 Score=167.09 Aligned_cols=292 Identities=12% Similarity=-0.009 Sum_probs=185.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008633 232 DAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEG 311 (558)
Q Consensus 232 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 311 (558)
+...+..+...+...|++++|.++|+++....|.+...+..++..+...|++++|..+++++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 344455555555556666666666666554444455555556666666666666666666666542 2244555556666
Q ss_pred HHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 312 LGRAG-RIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVAD 390 (558)
Q Consensus 312 ~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 390 (558)
+...| ++++|.+.++++.+.... +...|..+..++...|++++|.+.|+++.+.. +.+...+..+...|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 66666 666666666666655332 44556666666666666666666666666543 2334555556666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHcCCChhHHH
Q 008633 391 ALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVG--------CKLSLTAYKLLLRRLSGFGKCGMLL 462 (558)
Q Consensus 391 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~ 462 (558)
|...+++..+.. +.+...+..+...+...|++++|...++++.+.. .+....++..+...+...|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 766666666543 3345556666666666777777777766665531 1333567778888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHH
Q 008633 463 DLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKL-LASNKLE 529 (558)
Q Consensus 463 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~ 529 (558)
..+++..+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 8888887653 4466788888888888888888888888887653 23467777777777 4555543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-18 Score=164.74 Aligned_cols=292 Identities=11% Similarity=0.012 Sum_probs=185.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHH
Q 008633 196 PDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVIS 275 (558)
Q Consensus 196 ~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~ 275 (558)
.+...+..+...+...|++++|+++++++.+.. +.+...+..++.++...|++++|..+++++....+.+...|..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 344455556666666666666666666666543 2234455555566666666666666666665555556666666666
Q ss_pred HHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 276 GWSKLG-QVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFD 354 (558)
Q Consensus 276 ~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 354 (558)
.+...| ++++|...|++..+.. +.+...|..+...+...|++++|.+.++++.+.... +...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 666666 6667777766666543 223455666666666777777777777766665433 3445555667777777777
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCChhHH
Q 008633 355 ECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRG--------IVPSTGTITSFLEPLCSYGPPHAA 426 (558)
Q Consensus 355 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~ll~~~~~~g~~~~a 426 (558)
+|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. .......+..+...+...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 7777777776553 4455667777777777777777777777665431 122345666677777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCH
Q 008633 427 MMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGL-CNIGQL 493 (558)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~ 493 (558)
...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++ ...|+.
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 77777776654 3356677777777888888888888888777653 33566666666666 344543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-18 Score=166.60 Aligned_cols=288 Identities=11% Similarity=-0.007 Sum_probs=207.5
Q ss_pred cCCHhHHHH-HHHHhhcCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 246 RLHVGAASS-LFNSMKGKVLF----NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDD 320 (558)
Q Consensus 246 ~~~~~~A~~-~~~~m~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 320 (558)
.|++++|.+ .|++.....+. +...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 456666666 66644332111 34556677777777777777777777777653 3356667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH---------------HHHHHHhc
Q 008633 321 AIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTR---------------LISGLLKS 385 (558)
Q Consensus 321 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~---------------li~~~~~~ 385 (558)
|.+.++++.+.... +..++..+..+|...|++++|.+.++++.+.. +.+...+.. .+..+...
T Consensus 117 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 77777777766433 66677777777777777777777777777653 222222211 23334488
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 008633 386 RKVADALEVFEEMLDRGIVP-STGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDL 464 (558)
Q Consensus 386 g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 464 (558)
|++++|...++++.+..... +..++..+...+...|++++|...++++.+.. +.+..+|..+...+...|++++|+..
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999988764221 47788888888999999999999999988764 44678899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHhcCCHHHHHHH
Q 008633 465 WHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCP----------SRLVYSKLSNKLLASNKLESAYNL 534 (558)
Q Consensus 465 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------~~~~~~~l~~~~~~~g~~~~A~~~ 534 (558)
++++.+.. +.+...+..+...+.+.|++++|...++++++..... ...+|..+..+|...|++++|..+
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99998754 4567889999999999999999999999998652111 168899999999999999999988
Q ss_pred HHHH
Q 008633 535 FRKI 538 (558)
Q Consensus 535 ~~~m 538 (558)
+++-
T Consensus 353 ~~~~ 356 (368)
T 1fch_A 353 DARD 356 (368)
T ss_dssp HTTC
T ss_pred HHHH
Confidence 7643
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.8e-18 Score=168.12 Aligned_cols=289 Identities=11% Similarity=0.011 Sum_probs=203.5
Q ss_pred hCCHHHHHH-HHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 008633 211 AGQVYKAIQ-MLGRLEDFGLK---FDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEM 286 (558)
Q Consensus 211 ~g~~~~A~~-~~~~~~~~g~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A 286 (558)
.|++++|++ .+++..+.... .+...+..+...+.+.|++++|...|+++....|.+..+|..+...+.+.|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 466667766 66655433211 12345666677777777777777777777666666677777777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHhcC
Q 008633 287 ERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNA---------------VISNYISVG 351 (558)
Q Consensus 287 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~---------------li~~~~~~g 351 (558)
...|+++.+.. +.+..++..+...+...|++++|.+.++++.+.... +...+.. .+..+...|
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 77777777653 335667777777777777777777777777665432 1111110 133333888
Q ss_pred CHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 008633 352 DFDECMKYYKGMSSYNCEP--NMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMM 429 (558)
Q Consensus 352 ~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 429 (558)
++++|.++|+++.+.. +. +..++..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 196 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 196 LFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999888753 22 47888888999999999999999999888753 34567888888888899999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHhcCCHhHHHHH
Q 008633 430 YKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYP----------SDGEIYEYVIAGLCNIGQLENAVLV 499 (558)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------p~~~~~~~li~~~~~~g~~~~A~~~ 499 (558)
++++.+.. +.+..++..+..+|.+.|++++|...++++.+.... ....+|..+..++...|+.++|..+
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99888764 456788888999999999999999999888753211 1267899999999999999999988
Q ss_pred HHHHH
Q 008633 500 MEESL 504 (558)
Q Consensus 500 ~~~m~ 504 (558)
+++.+
T Consensus 353 ~~~~l 357 (368)
T 1fch_A 353 DARDL 357 (368)
T ss_dssp HTTCH
T ss_pred HHHHH
Confidence 87443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-18 Score=168.86 Aligned_cols=266 Identities=14% Similarity=0.022 Sum_probs=209.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVIS 345 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 345 (558)
+...|..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.+.|+++.+.... +..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 45568888888888888999988888888764 346778888888888889999999988888877533 6778888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHH
Q 008633 346 NYISVGDFDECMKYYKGMSSYNCEPN-----------MDTYTRLISGLLKSRKVADALEVFEEMLDRGIV-PSTGTITSF 413 (558)
Q Consensus 346 ~~~~~g~~~~A~~~~~~m~~~~~~p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l 413 (558)
+|...|++++|.+.|+++.+.. |+ ...+..+...+...|++++|...++++.+.... .+..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999998887642 22 223344578888899999999999999886422 157788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 414 LEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQL 493 (558)
Q Consensus 414 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 493 (558)
...+...|++++|...++++.+.. +.+..+|..+..+|...|++++|+..++++.+.. +.+..+|..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 899999999999999999988864 4568899999999999999999999999998763 44688999999999999999
Q ss_pred hHHHHHHHHHHhCCC---C--------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 494 ENAVLVMEESLRKGF---C--------PSRLVYSKLSNKLLASNKLESAYNLFRK 537 (558)
Q Consensus 494 ~~A~~~~~~m~~~g~---~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (558)
++|...++++++... . .+..+|..+..++...|+.+.+.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999986421 0 1257899999999999999998887654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-14 Score=146.86 Aligned_cols=365 Identities=11% Similarity=-0.008 Sum_probs=296.1
Q ss_pred chHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----hCC
Q 008633 142 SGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGR----RKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIR----AGQ 213 (558)
Q Consensus 142 ~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~----~g~ 213 (558)
+.+.|..+|+-+... -+..++..|...|.. .+++++|...|++..+.| +...+..+...|.. .++
T Consensus 58 ~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 58 DLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 345666666666554 367888899999988 899999999999999876 67888888888888 789
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHh----cCCHHH
Q 008633 214 VYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQ----RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSK----LGQVVE 285 (558)
Q Consensus 214 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~ 285 (558)
+++|++.|++..+.| +...+..|...|.. .++.++|.+.|++.... .+..++..+...|.. .++.++
T Consensus 131 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 131 KAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHH
Confidence 999999999999876 67788888888887 78999999999988654 378889999999998 899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 008633 286 MERVLKEIVAEGFSPDSLTFSFLIEGLGR----AGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYIS----VGDFDECM 357 (558)
Q Consensus 286 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 357 (558)
|.++|++..+.| +...+..+...|.. .+++++|.++|++..+.| +...+..+..+|.. .++.++|.
T Consensus 206 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~ 279 (490)
T 2xm6_A 206 SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKAL 279 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHH
Confidence 999999999875 56777778888876 789999999999998875 56677788888888 89999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHHHH
Q 008633 358 KYYKGMSSYNCEPNMDTYTRLISGLLKS-----RKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYG---PPHAAMMM 429 (558)
Q Consensus 358 ~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~ 429 (558)
++|++..+.| +...+..+...|... +++++|+..+++..+.| +...+..+...|...| +.++|.++
T Consensus 280 ~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~ 353 (490)
T 2xm6_A 280 EWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEW 353 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 9999998765 566777888888887 89999999999999875 4455666666666656 78999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHH
Q 008633 430 YKKARKVGCKLSLTAYKLLLRRLSG----FGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCN----IGQLENAVLVME 501 (558)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~ 501 (558)
+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.+ .++.++|...|+
T Consensus 354 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 427 (490)
T 2xm6_A 354 FRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFD 427 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99999875 67888888888988 899999999999999876 57788889999988 899999999999
Q ss_pred HHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 502 ESLRKGFC-P-SRLVYSKLSNKLLASNKLESAYNLFRKI 538 (558)
Q Consensus 502 ~m~~~g~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 538 (558)
++.+.+.. | +......+...+.. +.+.|.+...++
T Consensus 428 ~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~ 464 (490)
T 2xm6_A 428 TASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQY 464 (490)
T ss_dssp HHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHH
T ss_pred HHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHH
Confidence 99988633 2 33444444443332 334444433333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.1e-19 Score=185.53 Aligned_cols=120 Identities=13% Similarity=0.052 Sum_probs=98.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVA---EGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNA 342 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 342 (558)
-..|||+||++||+.|++++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 456888888888888888888888877654 47888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCC-HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc
Q 008633 343 VISNYISVGD-FDECMKYYKGMSSYNCEPNMDTYTRLISGLLKS 385 (558)
Q Consensus 343 li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 385 (558)
||+++|+.|+ .++|.++|++|.+.|+.||..+|++++.+..+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 8888888887 467888888888888888888888887665554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.6e-18 Score=165.17 Aligned_cols=265 Identities=9% Similarity=-0.031 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008633 234 ESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLG 313 (558)
Q Consensus 234 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 313 (558)
..+..+...+.+.|++++|...|+++....|.+..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3455666666666666666666666655555566666666666666666766766666666543 224566666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHH
Q 008633 314 RAGRIDDAIEVFDTMKEKGCG---------PDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEP--NMDTYTRLISGL 382 (558)
Q Consensus 314 ~~g~~~~a~~~~~~m~~~g~~---------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~ 382 (558)
..|++++|.+.++++.+.... .....+..+...+...|++++|.++|+++.+.. +. +..+|..+...|
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHH
Confidence 667777777666666554211 012234445777788888888888888887653 22 577788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 008633 383 LKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLL 462 (558)
Q Consensus 383 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 462 (558)
...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..+|...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 88888888888888877753 3456777788888888888888888888887754 345777888888888888888888
Q ss_pred HHHHHHHHCC---C--------CCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 008633 463 DLWHEMQESG---Y--------PSDGEIYEYVIAGLCNIGQLENAVLVMEE 502 (558)
Q Consensus 463 ~~~~~m~~~~---~--------~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (558)
..|+++.+.. . ..+..+|..+..++...|+.+.|..+.++
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8888876521 0 11357899999999999999988877664
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.9e-15 Score=151.95 Aligned_cols=388 Identities=11% Similarity=0.055 Sum_probs=259.4
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHhCCHHHHHH---
Q 008633 144 EAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSF-IRAGQVYKAIQ--- 219 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~-~~~g~~~~A~~--- 219 (558)
+.+...|+-+... .+.+...|...+..+.+.|++++|..+|+++.... |+...|...+... ...|+.+.|.+
T Consensus 29 ~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~ 104 (530)
T 2ooe_A 29 DKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMA 104 (530)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHH
Confidence 4555555555543 24566778888888888888888888888877653 5766666666533 34466555544
Q ss_pred -HHHHHHh-CCCCC-CHHHHHHHHHHHHh---------cCCHhHHHHHHHHhhcCCCCC--hhhHHHHHHHHH-------
Q 008633 220 -MLGRLED-FGLKF-DAESLNVVLWCLCQ---------RLHVGAASSLFNSMKGKVLFN--VMTYNIVISGWS------- 278 (558)
Q Consensus 220 -~~~~~~~-~g~~~-~~~~~~~ll~~~~~---------~~~~~~A~~~~~~m~~~~~~~--~~~~~~li~~~~------- 278 (558)
+|+...+ .|..| +...|...+....+ .|+++.|..+|++... .|.+ ...|........
T Consensus 105 ~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~ 183 (530)
T 2ooe_A 105 QAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLA 183 (530)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHH
Confidence 6665543 34333 45666666666554 5777888888887765 3222 123333222111
Q ss_pred ------hcCCHHHHHHHHHHHHH------cC---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHH
Q 008633 279 ------KLGQVVEMERVLKEIVA------EG---FSPD--------SLTFSFLIEGLGRA----GRI----DDAIEVFDT 327 (558)
Q Consensus 279 ------~~g~~~~A~~~~~~m~~------~g---~~p~--------~~t~~~ll~~~~~~----g~~----~~a~~~~~~ 327 (558)
+.+++..|..++.++.. .. +.|+ ...|...+...... ++. .++..+|++
T Consensus 184 ~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~ 263 (530)
T 2ooe_A 184 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQ 263 (530)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHH
Confidence 12345566665555321 11 2333 13444444332221 222 367778888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 328 MKEKGCGPDTNAYNAVISNYIS-------VGDFD-------ECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALE 393 (558)
Q Consensus 328 m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 393 (558)
..... +-+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..
T Consensus 264 al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~ 342 (530)
T 2ooe_A 264 CLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS 342 (530)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence 87763 3367788888888775 68877 899999998863234568889999999999999999999
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCChhHHHHHHHHHHH
Q 008633 394 VFEEMLDRGIVPS--TGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRR-LSGFGKCGMLLDLWHEMQE 470 (558)
Q Consensus 394 ~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~ 470 (558)
+|+++.+. .|+ ...|..++..+.+.|+.++|..+|++..+.. +.+...|...... +...|+.++|..+|+...+
T Consensus 343 ~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~ 419 (530)
T 2ooe_A 343 IYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK 419 (530)
T ss_dssp HHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 99999885 444 2478888887888899999999999998753 2233333332222 3468999999999998887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 471 SGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKG-FCPS--RLVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 471 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
.. +.+...|..++..+.+.|+.++|..+|++++..+ ..|+ ...|...+......|+.+.+..+.+++.+.
T Consensus 420 ~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 420 KY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 53 4467889999999999999999999999998863 2232 458888888888899999999999888754
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-18 Score=165.90 Aligned_cols=287 Identities=10% Similarity=0.062 Sum_probs=132.8
Q ss_pred HHHHHHcCCCchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Q 008633 132 VGKVVNRGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRA 211 (558)
Q Consensus 132 v~~~l~~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~ 211 (558)
+..++...+.- +.|..|++-. ++..+|..+..++.+.|++++|++.|.+. +|..+|..++.++...
T Consensus 9 ~~~ll~~~~~l-d~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~ 74 (449)
T 1b89_A 9 VQVLIEHIGNL-DRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCH-HHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC
Confidence 33444433322 4566676533 33359999999999999999999999653 5788999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008633 212 GQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLK 291 (558)
Q Consensus 212 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 291 (558)
|++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|..+|.
T Consensus 75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 75 GNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp ------------------------------------CHHHHTTTTT------CC----------------CTTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999988877764 4567889999999999999999998884 3677899999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 008633 292 EIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPN 371 (558)
Q Consensus 292 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 371 (558)
.+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .+
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ 206 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VH 206 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TC
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hC
Confidence 77 37899999999999999999999998 278999999999999999999966655433 33
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHHcCCCC------CHH
Q 008633 372 MDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSY--GPPHAAMMMYKKARKVGCKL------SLT 443 (558)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~ 443 (558)
..-...++..|.+.|++++|+.+++...... .-....|+-+.-.|++. ++..+.++.|.. +.++++ +..
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAH 283 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHH
Confidence 3445579999999999999999999988665 55567777777667664 333444443321 122222 345
Q ss_pred HHHHHHHHHHcCCChhHHHH
Q 008633 444 AYKLLLRRLSGFGKCGMLLD 463 (558)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~ 463 (558)
.|..+.-.|.+.++++.|..
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHH
Confidence 68888888999999998865
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.2e-19 Score=183.66 Aligned_cols=153 Identities=19% Similarity=0.263 Sum_probs=126.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhc----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008633 229 LKFDAESLNVVLWCLCQRLHVGAASSLFNSMKG----KVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLT 304 (558)
Q Consensus 229 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 304 (558)
...-..+||+||++||+.|++++|.++|+.|.+ +..||++|||+||.+||+.|++++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 344567999999999999999999999988753 4889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC------HHHHHH
Q 008633 305 FSFLIEGLGRAGR-IDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPN------MDTYTR 377 (558)
Q Consensus 305 ~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~ 377 (558)
|+++|+++|+.|+ .++|.++|++|.+.|+.||..+|++++..+.+. .+++..+++ ..+..|+ +.+...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHH
Confidence 9999999999998 578999999999999999999999999877665 334444444 2333443 344445
Q ss_pred HHHHHHhcC
Q 008633 378 LISGLLKSR 386 (558)
Q Consensus 378 li~~~~~~g 386 (558)
|.+.|.+.+
T Consensus 278 L~dl~s~d~ 286 (1134)
T 3spa_A 278 LRDVYAKDG 286 (1134)
T ss_dssp THHHHCCCS
T ss_pred HHHHHccCC
Confidence 555555544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-16 Score=152.94 Aligned_cols=265 Identities=9% Similarity=-0.021 Sum_probs=189.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008633 268 MTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNY 347 (558)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 347 (558)
..+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.++++.+.... +..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHH
Confidence 345555666666666666666666666543 224555666666666666666666666666655322 555666666666
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008633 348 ISVGDFDECMKYYKGMSSYNCEPNMDTYTRL--------------IS-GLLKSRKVADALEVFEEMLDRGIVPSTGTITS 412 (558)
Q Consensus 348 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 412 (558)
...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+.. +.+...+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 77777777777776666542 1122222222 22 3667788888888888887764 335677788
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008633 413 FLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQ 492 (558)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 492 (558)
+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...|..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 8888888899999999988887764 4467888899999999999999999999988754 4467889999999999999
Q ss_pred HhHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 493 LENAVLVMEESLRKGFCP-----------SRLVYSKLSNKLLASNKLESAYNLFRKI 538 (558)
Q Consensus 493 ~~~A~~~~~~m~~~g~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 538 (558)
+++|...++++.+..... +..++..+..++.+.|++++|.+++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999998753211 3778999999999999999999998754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.6e-16 Score=149.11 Aligned_cols=234 Identities=9% Similarity=-0.067 Sum_probs=140.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008633 162 DVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLW 241 (558)
Q Consensus 162 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 241 (558)
+...|..+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 33456677778888888888888888887764 3467788888888888888888888888887754 336677777888
Q ss_pred HHHhcCCHhHHHHHHHHhhcCCCCChhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008633 242 CLCQRLHVGAASSLFNSMKGKVLFNVMTYNIV--------------IS-GWSKLGQVVEMERVLKEIVAEGFSPDSLTFS 306 (558)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 306 (558)
.+...|++++|.+.++++....+.+...+..+ .. .+...|++++|.+.++++.+.. +.+...+.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 88888888888888887766544444444443 22 2444555555555555555442 22444555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 008633 307 FLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSR 386 (558)
Q Consensus 307 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 386 (558)
.+...+...|++++|.+.++++.+.... +..++..+...|...|++++|.+.|+++.+.. +.+..+|..+...+...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 5555555555555555555555544322 34455555555555555555555555554432 223444555555555555
Q ss_pred CHHHHHHHHHHHHH
Q 008633 387 KVADALEVFEEMLD 400 (558)
Q Consensus 387 ~~~~A~~~~~~m~~ 400 (558)
++++|...++++.+
T Consensus 255 ~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 255 QYDLAAKQLVRAIY 268 (327)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 55555555555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.7e-15 Score=150.67 Aligned_cols=375 Identities=9% Similarity=-0.049 Sum_probs=252.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhC----
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKE-----G---VNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDF---- 227 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~-----g---~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~---- 227 (558)
......||.|..++...|++++|++.|++..+. + -.....+|..+...|...|++++|...++++.+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344678999999999999999999999887542 1 1234678999999999999999999999887642
Q ss_pred -C-C-CCCHHHHHHHHHHHHhc--CCHhHHHHHHHHhhcCCCCChhhHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCC
Q 008633 228 -G-L-KFDAESLNVVLWCLCQR--LHVGAASSLFNSMKGKVLFNVMTYNIVISGW---SKLGQVVEMERVLKEIVAEGFS 299 (558)
Q Consensus 228 -g-~-~~~~~~~~~ll~~~~~~--~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~ 299 (558)
+ . .....+++.+..++... +++++|.+.|++.....|-+...+..+..++ ...++.++|++.+++..+.. +
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 1 12356677666666654 4689999999998776666777777666554 45677888999999888754 2
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH
Q 008633 300 PDSLTFSFLIEGLGR----AGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTY 375 (558)
Q Consensus 300 p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 375 (558)
.+...+..+...+.. .++.++|.+.+++....... +..++..+...|...|++++|.+.+++..+.. +-+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 355666666555544 46788999999998887544 77889999999999999999999999998763 4456667
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 008633 376 TRLISGLLKS-------------------RKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKV 436 (558)
Q Consensus 376 ~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (558)
..+..+|... +.+++|...+++..+.. +.+...+..+...+...|++++|+..|+++.+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 7666655432 23567777787777653 233455677788889999999999999998886
Q ss_pred CCCCCHH--HHHHHHH-HHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 008633 437 GCKLSLT--AYKLLLR-RLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRL 513 (558)
Q Consensus 437 ~~~~~~~--~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 513 (558)
...+... .+..+.. .+...|+.++|+..|++..+. .|+....... .+.+.+++++.++.. +.+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~~~~~~l~~~-p~~~~ 431 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQKIAKMRLSKN-GADSE 431 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHHHHHHHHHHHC-C-CTT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHHHHHHHHHHhC-CCCHH
Confidence 5433221 2222222 245678999999999998875 4444332222 234455666666543 34578
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhh
Q 008633 514 VYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRL 550 (558)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 550 (558)
+|..|..+|...|++++|.+.+++..+.+........
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHHHHHHHHHHHCC---------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 9999999999999999999999999876544333333
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=160.84 Aligned_cols=287 Identities=11% Similarity=0.116 Sum_probs=105.4
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 008633 175 RRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASS 254 (558)
Q Consensus 175 ~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~ 254 (558)
+.|+.++|.+.++++ ++..+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 456677777777766 23357777777777777777777777542 355677777777777777777777
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008633 255 LFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCG 334 (558)
Q Consensus 255 ~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 334 (558)
.++..... .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+
T Consensus 83 yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 83 YLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 66555443 3345667777777777777777776664 256667777777777777777777777755
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008633 335 PDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFL 414 (558)
Q Consensus 335 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 414 (558)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|+..|+++.|...... +.....-...++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHH
Confidence 25667777777777777777777766 1566777777777777777777544433 222333344566
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHH-CCCCC------CHHHHHHHHHHH
Q 008633 415 EPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQE-SGYPS------DGEIYEYVIAGL 487 (558)
Q Consensus 415 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p------~~~~~~~li~~~ 487 (558)
..|.+.|.+++|..+++...... +-....|+.+.-+|++. ++++.++.++.... .+++| +...|.-++..|
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777666544 44566666666666655 23333333332221 22232 344566666666
Q ss_pred HhcCCHhHHHHHHHHHHhC
Q 008633 488 CNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~ 506 (558)
.+.++++.|.. .|+++
T Consensus 293 ~~~~e~d~A~~---tm~~h 308 (449)
T 1b89_A 293 DKYEEYDNAII---TMMNH 308 (449)
T ss_dssp HHTTCHHHHHH---HHHHS
T ss_pred HhhchHHHHHH---HHHhC
Confidence 66677766654 45554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-15 Score=142.71 Aligned_cols=270 Identities=11% Similarity=0.056 Sum_probs=151.4
Q ss_pred hcCCHhHHHHHHHHhhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 245 QRLHVGAASSLFNSMKGKVLFN-VMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIE 323 (558)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 323 (558)
..|++..|+..++......|.+ ......+.++|...|++++|+..++. .-.|+..++..+...+...++.++|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 3455555555555443322111 12334445555556666555554433 123444555555555666666666666
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008633 324 VFDTMKEKGCGP-DTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRG 402 (558)
Q Consensus 324 ~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 402 (558)
.++++...+..| +...+..+..+|...|++++|++.+++ +.+...+..++..|.+.|++++|...++++.+..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 666665554323 344455555666666666666666655 2455566666666666666666666666666542
Q ss_pred CCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH
Q 008633 403 IVPSTGTI---TSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEI 479 (558)
Q Consensus 403 ~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 479 (558)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++..+.. +-+..+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 332211 11222233346677777777777665 24566777777777777777777777777776643 446667
Q ss_pred HHHHHHHHHhcCCHhH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 480 YEYVIAGLCNIGQLEN-AVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYN 533 (558)
Q Consensus 480 ~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 533 (558)
+..++..+...|+.++ +.++++++++. .|+... +.+...+.+.++++..
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHH
Confidence 7777777777777765 45777777754 354222 2233444445544443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-15 Score=143.87 Aligned_cols=252 Identities=12% Similarity=0.058 Sum_probs=149.2
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 008633 207 SFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEM 286 (558)
Q Consensus 207 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A 286 (558)
-....|++..|+...+................+..+|...|+++.|...++. ..+|+..++..+...+...|+.++|
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3445566666666665544322111123344455666666666666654433 2444566666666666666667777
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 287 ERVLKEIVAEGFSPD-SLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 287 ~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
++.++++...+..|+ ...+..+...+...|++++|.+.+++ +.+...+..++..|.+.|++++|.+.|+++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 777776666554343 34445555666666777777766665 34566666666777777777777777777665
Q ss_pred CCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 008633 366 YNCEPNMDTY---TRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSL 442 (558)
Q Consensus 366 ~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 442 (558)
.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|...++++.+.. +-+.
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~ 234 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHP 234 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 42 332211 11222333346777777777777665 24455666666666777777777777777766654 3456
Q ss_pred HHHHHHHHHHHcCCChhH-HHHHHHHHHHC
Q 008633 443 TAYKLLLRRLSGFGKCGM-LLDLWHEMQES 471 (558)
Q Consensus 443 ~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 471 (558)
.++..++..+...|+.++ +.++++++.+.
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 666667777777777654 45676666654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-13 Score=138.90 Aligned_cols=384 Identities=10% Similarity=0.054 Sum_probs=280.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
+-|..+|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|++++|.++|+++.+.. |+...|...
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 358899999998 47899999999999999986 35578899999999999999999999999999864 677788777
Q ss_pred HHHH-HhcCCHhHHHH----HHHHhhcC---CCCChhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCH
Q 008633 240 LWCL-CQRLHVGAASS----LFNSMKGK---VLFNVMTYNIVISGWSK---------LGQVVEMERVLKEIVAEGFSPDS 302 (558)
Q Consensus 240 l~~~-~~~~~~~~A~~----~~~~m~~~---~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~ 302 (558)
+... ...|+.+.|.+ +|++.... .+.+...|...+....+ .|++++|..+|++..+.......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 7533 45677777765 67665432 33467788888887655 68999999999999873111112
Q ss_pred HHHHHHHHHH-------------HhcCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHhc--
Q 008633 303 LTFSFLIEGL-------------GRAGRIDDAIEVFDTMK------EKG---CGPD--------TNAYNAVISNYISV-- 350 (558)
Q Consensus 303 ~t~~~ll~~~-------------~~~g~~~~a~~~~~~m~------~~g---~~p~--------~~~~~~li~~~~~~-- 350 (558)
..|....... .+.+++..|..++..+. +.. ++|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 3343322211 12456777777776632 221 2443 24555555433322
Q ss_pred --CCH----HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHH
Q 008633 351 --GDF----DECMKYYKGMSSYNCEPNMDTYTRLISGLLK-------SRKVA-------DALEVFEEMLDRGIVPSTGTI 410 (558)
Q Consensus 351 --g~~----~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~p~~~~~ 410 (558)
++. +.|..+|++..... +-+...|...+..+.+ .|+++ +|..++++..+.-.+-+...+
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 232 47788999888753 4567888888888876 68987 899999998863223457788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 008633 411 TSFLEPLCSYGPPHAAMMMYKKARKVGCKLS-LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAG-LC 488 (558)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~ 488 (558)
..++..+...|++++|..+|+++.+.. +.+ ...|..++..+.+.|+.++|.++|++..+.. +.+...|...+.. +.
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHH
Confidence 888888899999999999999999853 223 3588999998999999999999999998753 2233444433322 34
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-Cc-hhhhhh
Q 008633 489 NIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQ-ND-YARRLW 551 (558)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~-~~~~~~ 551 (558)
..|+.++|..+|+++++.. +-+...|..++..+.+.|+.++|..+|++...... .| ....+|
T Consensus 403 ~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred HcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence 6899999999999998763 23588999999999999999999999999987643 33 234466
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-12 Score=140.64 Aligned_cols=320 Identities=15% Similarity=0.187 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGV--NPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~--~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
..--...+++|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +..+..+...+..+.. ..-+.
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA 1056 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIA 1056 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHH
Confidence 33345677888889999999999998874421 11233344455444444 3444444444433211 12244
Q ss_pred HHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 241 WCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDD 320 (558)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 320 (558)
..+...|.+++|..+|++... .....+.++. ..|++++|.++.++. -+..+|..+..++...|++++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDV----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCC----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 455555666666666655421 1222222222 345555555555433 124455555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 321 AIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 321 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
|.+.|.+. -|...|..++.++.+.|++++|.+++....+.. ++....+.++.+|++.+++++..... .
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 55555432 144455555555555555555555555544432 22222223555555555555322221 1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHH
Q 008633 401 RGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIY 480 (558)
Q Consensus 401 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 480 (558)
.++...+..+...|...|++++|..+|..+ ..|..+..+|++.|++++|.+.+++.. +..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHH
Confidence 223344444555555555555555555543 245555555555555555555555441 23444
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 481 EYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKI 538 (558)
Q Consensus 481 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 538 (558)
..+-.+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444444444444443321 1222333444444444444444444444433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-12 Score=138.97 Aligned_cols=263 Identities=13% Similarity=0.142 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 008633 198 LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGW 277 (558)
Q Consensus 198 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~ 277 (558)
..+|..+..++...|++++|++.|.+. -|...|..++.++.+.|++++|.+.|....... ++....+.++.+|
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~-~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFAL 1177 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-ccccccHHHHHHH
Confidence 344444444444444444444444332 133344444444444444444444444333221 1111122244444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 278 SKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECM 357 (558)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 357 (558)
++.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.
T Consensus 1178 AKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1178 AKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred HhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHH
Confidence 4444444322221 1 123333334444444444444444444442 23444444444444444444
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 008633 358 KYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVG 437 (558)
Q Consensus 358 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 437 (558)
+.+++.. +..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++......
T Consensus 1242 EaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1242 DGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred HHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 4444432 234444444444444444444443322 22233444455556666666666666665555433
Q ss_pred CCCCHHHHHHHHHHHHcC--CChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHhHHH
Q 008633 438 CKLSLTAYKLLLRRLSGF--GKCGMLLDLWHEMQESGYPS------DGEIYEYVIAGLCNIGQLENAV 497 (558)
Q Consensus 438 ~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~li~~~~~~g~~~~A~ 497 (558)
+-....|.-+...|++. ++..++.++|..-. ++++ +...|.-++..|.+.|+++.|.
T Consensus 1311 -raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1311 -RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred -hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 33344444444444443 22333333333211 1111 3445666666666666666665
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-14 Score=131.53 Aligned_cols=223 Identities=13% Similarity=0.140 Sum_probs=116.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCC----HHHHHHH
Q 008633 305 FSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYN--CEPN----MDTYTRL 378 (558)
Q Consensus 305 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~l 378 (558)
+..+...+...|++++|...++++.+.. .+..++..+..+|...|++++|.+.+++..+.. ..++ ..+|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444433 234444444444444444444444444443321 0001 2444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh
Q 008633 379 ISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKC 458 (558)
Q Consensus 379 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 458 (558)
...+...|++++|...+++..+. .|+. ..+...|++++|...++.+.+.. +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 45555555555555555554442 2221 12333445555555555555432 22344555666666666666
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 459 GMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKI 538 (558)
Q Consensus 459 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 538 (558)
++|...++++.+.. +.+..+|..+...+...|++++|...++++++.. +.+..++..+..++.+.|++++|.+.+++.
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666666666543 3355666667777777777777777777766543 233666666777777777777777777666
Q ss_pred HHh
Q 008633 539 KIA 541 (558)
Q Consensus 539 ~~~ 541 (558)
.+.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-13 Score=137.16 Aligned_cols=332 Identities=11% Similarity=-0.027 Sum_probs=230.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-C-CCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCCC
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKE-----G-V-NPDLETLSIVMDSFIRAG--QVYKAIQMLGRLEDFGLK 230 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~-----g-~-~~~~~t~~~li~~~~~~g--~~~~A~~~~~~~~~~g~~ 230 (558)
+....+|+.+..+|...|++++|...+++..+. + . .....++.....++...| ++++|++.|++..+...
T Consensus 91 ~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p- 169 (472)
T 4g1t_A 91 IRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP- 169 (472)
T ss_dssp TTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-
T ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-
Confidence 445789999999999999999999999887642 1 1 123567777666666654 68999999999987642
Q ss_pred CCHHHHHHHHHH---HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHH
Q 008633 231 FDAESLNVVLWC---LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSK----LGQVVEMERVLKEIVAEGFSPDSL 303 (558)
Q Consensus 231 ~~~~~~~~ll~~---~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ 303 (558)
-+...+..+..+ +...++.++|++.+++.....|.+..++..+...+.. .|++++|.+.+++..... +.+..
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~ 248 (472)
T 4g1t_A 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTD 248 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHH
T ss_pred CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHH
Confidence 245555555554 4456778889999988776666677888777766655 467789999999988764 34677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHhh
Q 008633 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV-------------------GDFDECMKYYKGMS 364 (558)
Q Consensus 304 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~ 364 (558)
.+..+...+...|++++|.+.+++..+.... +..++..+..+|... +..++|...|++..
T Consensus 249 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 327 (472)
T 4g1t_A 249 VLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD 327 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 8889999999999999999999999887544 677777777666432 23677888888877
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCChhHHHHHHHHHHHcCCCCC
Q 008633 365 SYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTG--TITSFLE-PLCSYGPPHAAMMMYKKARKVGCKLS 441 (558)
Q Consensus 365 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~ 441 (558)
+.. +.+..++..+...|...|++++|++.|++..+....+... .+..+.. .....|+.++|+..|++..+.. |+
T Consensus 328 ~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~ 404 (472)
T 4g1t_A 328 EAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QK 404 (472)
T ss_dssp HHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CC
T ss_pred hcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cc
Confidence 654 4556778899999999999999999999998865433221 1222222 2346799999999999998854 33
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 008633 442 LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKG 507 (558)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 507 (558)
....... .+.+.++++...+.. +.+..+|..+...|...|++++|++.|+++++.+
T Consensus 405 ~~~~~~~---------~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 405 SREKEKM---------KDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp CHHHHHH---------HHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred cHHHHHH---------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2222211 234455566555543 5577899999999999999999999999999864
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.5e-14 Score=128.86 Aligned_cols=226 Identities=13% Similarity=0.070 Sum_probs=160.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHH
Q 008633 267 VMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCG--PD----TNAY 340 (558)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--p~----~~~~ 340 (558)
...|..+...+...|++++|...|++..+.. .+...+..+..++...|++++|.+.++++.+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456666667777777777777777776665 56666667777777777777777777766654221 11 4667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 341 NAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSY 420 (558)
Q Consensus 341 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 420 (558)
..+...|...|++++|.+.|+++.+. .|+. ..+...|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 77777777777777777777777764 3442 34556677788888887777652 22345566677777778
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 008633 421 GPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVM 500 (558)
Q Consensus 421 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 500 (558)
|++++|...++++.+.. +.+...+..+...+...|++++|+..+++..+.. +.+...|..+...+...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88888888888877754 3467778888888888888888888888888754 446778888888899999999999998
Q ss_pred HHHHhC
Q 008633 501 EESLRK 506 (558)
Q Consensus 501 ~~m~~~ 506 (558)
+++++.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.1e-14 Score=125.69 Aligned_cols=209 Identities=16% Similarity=0.050 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
++...|..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|++.+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 344455555555555555555555555555442 2244555555555555555555555555555433 12344444444
Q ss_pred HHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 241 WCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDD 320 (558)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 320 (558)
.++.+.+. .. .. .+...|++++|+..+++..+.. +-+...+..+...+...|++++
T Consensus 81 ~~~~~~~~-----------~~---~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 81 EAYVALYR-----------QA---ED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDK 136 (217)
T ss_dssp HHHHHHHH-----------TC---SS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhh-----------hh---hh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHH
Confidence 44444400 00 00 0000055555555555555432 1134445555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 321 AIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEM 398 (558)
Q Consensus 321 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (558)
|...|++..+.. .+...+..+..+|...|++++|...|++..+.. +.+...+..+...+...|++++|+..+++.
T Consensus 137 A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 137 AEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555554 355555555555555555555555555555432 334455555555555555565555555543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.3e-14 Score=125.62 Aligned_cols=200 Identities=15% Similarity=0.042 Sum_probs=147.4
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008633 231 FDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIE 310 (558)
Q Consensus 231 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 310 (558)
++...+..+...+.+.|++++|...|++.....|.+...|..+...+.+.|++++|+..+++..+.. +-+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3455666666677777777777777777766666677777777777777777777777777777653 224566667777
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 008633 311 GLGRA-----------GRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLI 379 (558)
Q Consensus 311 ~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 379 (558)
.+... |++++|...+++..+.... +...+..+..+|...|++++|++.|++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 77777 9999999999999988554 77889999999999999999999999999876 7888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008633 380 SGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARK 435 (558)
Q Consensus 380 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (558)
.+|...|++++|+..|++..+.. +.+...+..+...+...|++++|+..+++...
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999998864 34567788888889999999999999987654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.2e-13 Score=125.14 Aligned_cols=198 Identities=14% Similarity=0.113 Sum_probs=123.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 008633 235 SLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD--SLTFSFLIEGL 312 (558)
Q Consensus 235 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~ 312 (558)
.+......+...|++++|...|++.....|.+...+..+...+...|++++|...+++..+.+..++ ...|..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3444556666677777777777766655555666777777777777777777777777766321121 23466677777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 313 GRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADAL 392 (558)
Q Consensus 313 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 392 (558)
...|++++|.+.+++..+.... +..++..+...|...|++++|.+.|++..+.. +.+...|..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777665433 45667777777777777777777777776652 344555665552333445777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHH
Q 008633 393 EVFEEMLDRGIVPSTGTITSFLEPLCSYGP---PHAAMMMYKKARK 435 (558)
Q Consensus 393 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~ 435 (558)
+.|+++.+.. +.+...+..+...+...|+ .++|...++++.+
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 7777776642 2224444445555555555 5556555555544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.9e-12 Score=118.66 Aligned_cols=224 Identities=12% Similarity=0.016 Sum_probs=123.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGR----AGRIDDAIEVFDTMKEKGCGPDTNAYN 341 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~ 341 (558)
+..++..+...+...|++++|...|++..+.+ +...+..+...+.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44555556666666666666666666665522 34455555555555 666666666666665554 455555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008633 342 AVISNYIS----VGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLK----SRKVADALEVFEEMLDRGIVPSTGTITSF 413 (558)
Q Consensus 342 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 413 (558)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 56666666 666666666666665543 45555556666665 566666666666655543 33334444
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008633 414 LEPLCS----YGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSG----FGKCGMLLDLWHEMQESGYPSDGEIYEYVIA 485 (558)
Q Consensus 414 l~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 485 (558)
...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 444444 555555555555555443 23444445555555 555555555555555543 2344455555
Q ss_pred HHHh----cCCHhHHHHHHHHHHhCC
Q 008633 486 GLCN----IGQLENAVLVMEESLRKG 507 (558)
Q Consensus 486 ~~~~----~g~~~~A~~~~~~m~~~g 507 (558)
.|.+ .+++++|...+++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 5555 555555555555555443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.6e-12 Score=118.27 Aligned_cols=225 Identities=11% Similarity=-0.003 Sum_probs=199.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 008633 301 DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYIS----VGDFDECMKYYKGMSSYNCEPNMDTYT 376 (558)
Q Consensus 301 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~ 376 (558)
+..++..+...+...|++++|.+.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56677888889999999999999999998843 56788889999999 999999999999999875 788899
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 008633 377 RLISGLLK----SRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCS----YGPPHAAMMMYKKARKVGCKLSLTAYKLL 448 (558)
Q Consensus 377 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 448 (558)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 99999999 999999999999999875 67778888888888 999999999999999876 56778888
Q ss_pred HHHHHc----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008633 449 LRRLSG----FGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCN----IGQLENAVLVMEESLRKGFCPSRLVYSKLSN 520 (558)
Q Consensus 449 i~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 520 (558)
...|.. .+++++|+..+++..+.+ +...+..+...|.. .+++++|+..+++..+.+ | ...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHHHH
Confidence 888888 899999999999999875 56788889999999 999999999999999875 2 678888999
Q ss_pred HHHh----cCCHHHHHHHHHHHHHhcC
Q 008633 521 KLLA----SNKLESAYNLFRKIKIARQ 543 (558)
Q Consensus 521 ~~~~----~g~~~~A~~~~~~m~~~~~ 543 (558)
.|.. .|++++|.+.+++..+.+.
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 9999 9999999999999987653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-13 Score=131.56 Aligned_cols=218 Identities=9% Similarity=0.079 Sum_probs=138.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGR-IDDAIEVFDTMKEKGCGPDTNAYNAVI 344 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~li 344 (558)
+...|+.+...+.+.|++++|+..+++..+.. +-+...|+.+..++...|+ +++|+..++++.+.... +...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 56677888888888888888888888887753 2246677777777888886 88888888888777554 677777788
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCh
Q 008633 345 SNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCS-YGPP 423 (558)
Q Consensus 345 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~ 423 (558)
.++...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 88888888888888888777654 4566777777777777777777777777777653 2345566666666666 4443
Q ss_pred hHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHcCC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 424 HAA-----MMMYKKARKVGCKLSLTAYKLLLRRLSGFG--KCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNI 490 (558)
Q Consensus 424 ~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 490 (558)
++| +..++++.+.. +-+...|..+...+...| ++++|++.+.++ +. -+.+...+..+...|.+.
T Consensus 252 ~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence 555 24444444432 223444444444444444 344444444444 21 122334444444444443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-13 Score=122.67 Aligned_cols=199 Identities=9% Similarity=-0.062 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC 242 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 242 (558)
...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5667777777777777777777777776653 3356666677777777777777777777766543 2245555666666
Q ss_pred HHhcCCHhHHHHHHHHhhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 243 LCQRLHVGAASSLFNSMKG--KVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDD 320 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 320 (558)
|...|++++|.+.|+++.. ..+.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666554 333344555555555555555555555555555432 1234444445555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 321 AIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 321 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
|...++.+.+... .+...+..+...+.+.|++++|.++++++.+
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555444322 2344444444444455555555555554443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-13 Score=126.69 Aligned_cols=198 Identities=10% Similarity=0.022 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 008633 268 MTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGP--DTNAYNAVIS 345 (558)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~ 345 (558)
..+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++++.+.+..+ ....|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344455566666666666666666666542 1123355555566666666666666666665532111 1233555666
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 008633 346 NYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHA 425 (558)
Q Consensus 346 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 425 (558)
.|...|++++|.+.|++..+.. +.+..+|..+...|...|++++|...+++..+.. +.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665532 2344555556666666666666666665554431 1223333333312223335555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHH
Q 008633 426 AMMMYKKARKVGCKLSLTAYKLLLRRLSGFGK---CGMLLDLWHEMQ 469 (558)
Q Consensus 426 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~ 469 (558)
|...++++.+.. +.+...+..+...+...|+ +++|...+++..
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 555555444432 1223333334444444443 444444444433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-12 Score=119.95 Aligned_cols=209 Identities=11% Similarity=-0.017 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 008633 198 LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGW 277 (558)
Q Consensus 198 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~ 277 (558)
...+..+...+...|++++|.+.++++.+.. +.+..++..+..+|...|++++|.+.|+++....+.+...|..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 5678888899999999999999999998764 346888999999999999999999999998776677889999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 278 SKLGQVVEMERVLKEIVAEGFSP-DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDEC 356 (558)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 356 (558)
...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+.... +...+..+...|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998743445 4567888899999999999999999999887543 688899999999999999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 008633 357 MKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTIT 411 (558)
Q Consensus 357 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 411 (558)
.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+. .|+...+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~ 246 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHH
Confidence 99999998764 467788899999999999999999999999886 35544433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-13 Score=127.47 Aligned_cols=246 Identities=11% Similarity=-0.013 Sum_probs=150.5
Q ss_pred cCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 280 LGQVVEMERVLKEIVAEGFS---PDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDEC 356 (558)
Q Consensus 280 ~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 356 (558)
.|++++|+..++++.+.... .+..++..+...+...|++++|.+.++++.+.... +..++..+..+|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 35666666666666654211 12445666666666667777777666666665432 566666677777777777777
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 008633 357 MKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKV 436 (558)
Q Consensus 357 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 436 (558)
.+.|+++.+.. +.+..+|..+...|...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 77777766543 334566667777777777777777777776664 233333333333445557777777777666554
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHH
Q 008633 437 GCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYP---SDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRL 513 (558)
Q Consensus 437 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 513 (558)
. +++...+. ++..+...++.++|...++...+.... .+...|..+...+...|++++|...++++++. .|+.
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~- 248 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN- 248 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT-
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh-
Confidence 3 22323333 555566667777777777776543211 01467788888888889999999999888865 3532
Q ss_pred HHHHHHHHHHhcCCHHHHHHHH
Q 008633 514 VYSKLSNKLLASNKLESAYNLF 535 (558)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~ 535 (558)
+.....++...|++++|.+.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 223355677778888887765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-13 Score=137.27 Aligned_cols=368 Identities=8% Similarity=-0.054 Sum_probs=205.9
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhC-----CHH
Q 008633 144 EAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFF---DFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAG-----QVY 215 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g-----~~~ 215 (558)
+.|...|+-+.... +..++..+...|...|+. ++|...|++..+. +...+..+...+...| +.+
T Consensus 20 ~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 20 VTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred HHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHH
Confidence 44555555444331 334455566666666666 7777777776643 4455555555444443 667
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHH---HHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 216 KAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAA---SSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKE 292 (558)
Q Consensus 216 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A---~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 292 (558)
+|++.|++..+.|.. ..+..|...|...+..+.+ .+.+...... .+...+..|...|...+.++++......
T Consensus 92 ~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~~a~~~Lg~~y~~~~~~~~~~~~a~~ 166 (452)
T 3e4b_A 92 EAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYPEAGLAQVLLYRTQGTYDQHLDDVER 166 (452)
T ss_dssp HHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCTTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred HHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 778788777776532 2566666666665544333 3333333211 1455666777777777755544444333
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHhhh
Q 008633 293 IVAEGFSPDSLTFSFLIEGLGRAG---RIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV----GDFDECMKYYKGMSS 365 (558)
Q Consensus 293 m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~ 365 (558)
+.+.-...+...+..+...|...| +.++|.+.|++..+.|.. +...+..|..+|... +++++|.++|++..
T Consensus 167 ~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 167 ICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 332211222336667777777777 778888888888877754 555555666766554 67888888888877
Q ss_pred CCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHHcC
Q 008633 366 YNCEPNMDTYTRLISG-L--LKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYG-----PPHAAMMMYKKARKVG 437 (558)
Q Consensus 366 ~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~ 437 (558)
. -+...+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|..+|++.. .
T Consensus 245 ~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~- 315 (452)
T 3e4b_A 245 P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G- 315 (452)
T ss_dssp G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T-
T ss_pred C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C-
Confidence 3 345555666555 3 35778888888888887766 4555555555554 44 7888888887766 3
Q ss_pred CCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCC
Q 008633 438 CKLSLTAYKLLLRRLSG----FGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCN----IGQLENAVLVMEESLRKGFC 509 (558)
Q Consensus 438 ~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~ 509 (558)
-+...+..|...|.. ..+.++|...|+...+.|. ......|...|.. ..+.++|..+++...+.|.
T Consensus 316 --g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~- 389 (452)
T 3e4b_A 316 --REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT- 389 (452)
T ss_dssp --TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-
T ss_pred --CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-
Confidence 355666666666665 3478888888888877663 2345555555553 3578888888888887763
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 510 PSRLVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 510 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
++.......+......++.++|.++.++.+..
T Consensus 390 ~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 390 PEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 33332222333333445667777777766553
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-12 Score=117.21 Aligned_cols=163 Identities=11% Similarity=-0.083 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 008633 235 SLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKL-GQVVEMERVLKEIVAEGFSPD-SLTFSFLIEGL 312 (558)
Q Consensus 235 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~ 312 (558)
.+..+...+...|++++|.+.+++.....+.+..++..+...+... |++++|...++++.+.+..|+ ...+..+...+
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 123 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence 3333333333334444444433333332233334444444444444 444444444444443111121 23334444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHHhcCCHHHH
Q 008633 313 GRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCE-PNMDTYTRLISGLLKSRKVADA 391 (558)
Q Consensus 313 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A 391 (558)
...|++++|...++++.+.... +...+..+..++.+.|++++|.++++++.+.. + .+...+..+...+...|+.++|
T Consensus 124 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a 201 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAA 201 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHH
Confidence 4444444444444444433211 33444444444444444444444444444322 1 2333344444444444444444
Q ss_pred HHHHHHHH
Q 008633 392 LEVFEEML 399 (558)
Q Consensus 392 ~~~~~~m~ 399 (558)
..+++.+.
T Consensus 202 ~~~~~~~~ 209 (225)
T 2vq2_A 202 YEYEAQLQ 209 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-12 Score=117.00 Aligned_cols=211 Identities=14% Similarity=0.043 Sum_probs=181.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 456788999999999999999999999998864 3468899999999999999999999999998764 34778899999
Q ss_pred HHHHhc-CCHhHHHHHHHHhhc--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 008633 241 WCLCQR-LHVGAASSLFNSMKG--KVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGR 317 (558)
Q Consensus 241 ~~~~~~-~~~~~A~~~~~~m~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 317 (558)
..+... |++++|...++++.. ..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 999999 999999999999987 444457889999999999999999999999998864 3357889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 008633 318 IDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYT 376 (558)
Q Consensus 318 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 376 (558)
+++|.+.++++.+.....+...+..+...+...|+.++|..+++.+.+. .|+.....
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~ 219 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHH
Confidence 9999999999988754247788888889999999999999999998764 35544333
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.7e-13 Score=123.01 Aligned_cols=203 Identities=11% Similarity=0.049 Sum_probs=117.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
..+..+|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|++.++++.+.. +.+..++..+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 97 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA 97 (243)
T ss_dssp ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence 3455667777777888888888888888887753 3467777777788888888888888888777653 2356666667
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRID 319 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 319 (558)
...+...|++++|.+.++++....+.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+.+.|+++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 7777777777777777776655555566666666777777777777777776666542 224555555666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 008633 320 DAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSY 366 (558)
Q Consensus 320 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 366 (558)
+|.+.++++.+.... +..++..+..+|.+.|++++|.+.++++.+.
T Consensus 177 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666665554322 4555555666666666666666666655543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=7.9e-13 Score=121.47 Aligned_cols=157 Identities=10% Similarity=0.052 Sum_probs=55.1
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRID 319 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 319 (558)
...+...|++++|...|+++....+.+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 30 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 108 (243)
T 2q7f_A 30 MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYK 108 (243)
T ss_dssp ------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHH
Confidence 3333333344444443333333333333344444444444444444444444433321 112333333333344444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 320 DAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 320 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
+|.+.++++.+.... +...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 109 ~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 186 (243)
T 2q7f_A 109 EAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVT 186 (243)
T ss_dssp HHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444443333211 23333334444444444444444444433321 1223333333344444444444444444333
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-12 Score=127.66 Aligned_cols=198 Identities=9% Similarity=0.035 Sum_probs=130.0
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HhHHHHHHHHhhcCCCCChhhHHHHHH
Q 008633 197 DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLH-VGAASSLFNSMKGKVLFNVMTYNIVIS 275 (558)
Q Consensus 197 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~li~ 275 (558)
+...|..+...+.+.|++++|++.++++.+... -+..+|+.+..++...|+ +++|+..|++.....|-+...|+.+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 345677777778888888888888888877542 256677777777777775 777777777776666667777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHH
Q 008633 276 GWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYIS-VGDFD 354 (558)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~ 354 (558)
++.+.|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++++.... +...|+.+..++.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 7777777777777777777653 225566666666777777777777777777666444 56666666666666 44435
Q ss_pred HH-----HHHHHHhhhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Q 008633 355 EC-----MKYYKGMSSYNCEPNMDTYTRLISGLLKSR--KVADALEVFEEM 398 (558)
Q Consensus 355 ~A-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m 398 (558)
+| ++.|++..+.. +-+...|..+...+...| ++++|++.+.++
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 55 35555555432 234455555555555555 355555555554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-13 Score=130.05 Aligned_cols=244 Identities=12% Similarity=-0.018 Sum_probs=140.0
Q ss_pred CCHhHHHHHHHHhhcCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 247 LHVGAASSLFNSMKGKV----LFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAI 322 (558)
Q Consensus 247 ~~~~~A~~~~~~m~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 322 (558)
|++++|...|+++.... +.+..+|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 44555555555554321 1134455556666666666666666666665543 224555666666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008633 323 EVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRG 402 (558)
Q Consensus 323 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 402 (558)
+.++++.+.... +..++..+..+|.+.|++++|.+.|+++.+. .|+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 666666655322 4556666666666677777777777666654 2333333334444455567777777776655542
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHH
Q 008633 403 IVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCK---LSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEI 479 (558)
Q Consensus 403 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 479 (558)
+++...+ .++..+...++.++|...+..+.+.... .+...+..+...|...|++++|...|++..+.. |+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN-- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--
Confidence 2222222 2444555566666677666665443211 114677778888888888999998888888753 322
Q ss_pred HHHHHHHHHhcCCHhHHHHHH
Q 008633 480 YEYVIAGLCNIGQLENAVLVM 500 (558)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~ 500 (558)
+.....++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 233355667778888877665
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-12 Score=129.36 Aligned_cols=344 Identities=12% Similarity=0.001 Sum_probs=228.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008633 168 VIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQV---YKAIQMLGRLEDFGLKFDAESLNVVLWCLC 244 (558)
Q Consensus 168 ~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~---~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 244 (558)
.+...+.+.|++++|.++|++..+.| +..++..+...|...|+. ++|+++|++..+. +...+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35667788899999999999998776 344555666666777877 8999999988854 5566777777555
Q ss_pred hcC-----CHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008633 245 QRL-----HVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVV---EMERVLKEIVAEGFSPDSLTFSFLIEGLGRAG 316 (558)
Q Consensus 245 ~~~-----~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 316 (558)
..+ +.++|...|++...... ...+..|...|...+..+ ++.+.+......|. ......+...|...+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQG 155 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHT
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCC
Confidence 555 77899999988765433 347778888887766543 34555555555553 345556667777777
Q ss_pred CHHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc----
Q 008633 317 RIDDA----IEVFDTMKEKGCGPDTNAYNAVISNYISVG---DFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKS---- 385 (558)
Q Consensus 317 ~~~~a----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---- 385 (558)
.++++ ..++...... +...+..|..+|.+.| +.++|++.|++..+.| .++...+..+...|...
T Consensus 156 ~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSS
T ss_pred CcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCC
Confidence 55444 4444443332 3337788889999999 8999999999999887 56777667777777654
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-----C
Q 008633 386 RKVADALEVFEEMLDRGIVPSTGTITSFLEP-L--CSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFG-----K 457 (558)
Q Consensus 386 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~ 457 (558)
+++++|+..|++.. .| +...+..+... + ...++.++|..+|++..+.| +...+..|...|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 79999999999987 33 33344444444 3 45789999999999998877 6677777777776 45 8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 008633 458 CGMLLDLWHEMQESGYPSDGEIYEYVIAGLCN----IGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLA----SNKLE 529 (558)
Q Consensus 458 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~ 529 (558)
+++|.+.|++.. .| +...+..|...|.. ..+.++|..+|++..+.|. + .....|...|.. ..+.+
T Consensus 303 ~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~G~g~~~d~~ 375 (452)
T 3e4b_A 303 AKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-N--SADFAIAQLFSQGKGTKPDPL 375 (452)
T ss_dssp HHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-T--THHHHHHHHHHSCTTBCCCHH
T ss_pred HHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-H--HHHHHHHHHHHhCCCCCCCHH
Confidence 999999999887 43 66777778777766 3489999999999998763 3 345567777764 45889
Q ss_pred HHHHHHHHHHHhcC
Q 008633 530 SAYNLFRKIKIARQ 543 (558)
Q Consensus 530 ~A~~~~~~m~~~~~ 543 (558)
+|...+++..+.|.
T Consensus 376 ~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 376 NAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCC
Confidence 99999888876654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-12 Score=130.35 Aligned_cols=301 Identities=12% Similarity=0.035 Sum_probs=164.5
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHhhcC------CCC
Q 008633 196 PDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD----AESLNVVLWCLCQRLHVGAASSLFNSMKGK------VLF 265 (558)
Q Consensus 196 ~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~------~~~ 265 (558)
.....+......+...|++++|+..++++.+.+.. + ..++..+...+...|++++|...+++.... .+.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34455555666666667777777777666654321 2 234555555566666666666665554211 011
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFS-PDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVI 344 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 344 (558)
...++..+...+...|++++|...+++..+.... ++ ......++..+.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------------------------~~~~~~~~~~l~ 134 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-------------------------------KVGEARALYNLG 134 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-------------------------------ccchHHHHHHHH
Confidence 2334445555555555555555555554442100 01 000122445555
Q ss_pred HHHHhcCC--------------------HHHHHHHHHHhhhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 345 SNYISVGD--------------------FDECMKYYKGMSSY----NCE-PNMDTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 345 ~~~~~~g~--------------------~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
..|...|+ +++|.+.+++..+. +.. ....++..+...|...|++++|...+++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55555555 55555555544321 101 112345556666666666666666666654
Q ss_pred HCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 008633 400 DRGI-VPS----TGTITSFLEPLCSYGPPHAAMMMYKKARKV----GCKL-SLTAYKLLLRRLSGFGKCGMLLDLWHEMQ 469 (558)
Q Consensus 400 ~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 469 (558)
+... .++ ...+..+...+...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3210 111 124555666666677777777777665542 1111 14566677777888888888888877765
Q ss_pred HCCC-CCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCH
Q 008633 470 ESGY-PSD----GEIYEYVIAGLCNIGQLENAVLVMEESLRK----GFCPS-RLVYSKLSNKLLASNKL 528 (558)
Q Consensus 470 ~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~ 528 (558)
+..- ..+ ..++..+...+...|++++|...++++.+. +..+. ..++..+...+...|+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 4210 111 446777888888888888888888887653 21111 45677777777777655
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-12 Score=130.78 Aligned_cols=133 Identities=11% Similarity=-0.053 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHCC--CC---CCHH
Q 008633 409 TITSFLEPLCSYGPPHAAMMMYKKARKVGC-KLS----LTAYKLLLRRLSGFGKCGMLLDLWHEMQESG--YP---SDGE 478 (558)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~---p~~~ 478 (558)
.+..+...+...|++++|...+++..+... ..+ ...+..+...|...|++++|...+++..+.. .. ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444555555666666666666665544210 011 2356667777778888888887777665421 00 1145
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 479 IYEYVIAGLCNIGQLENAVLVMEESLRK----GFCP-SRLVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
++..+...+...|++++|...++++++. +-.+ ...++..+...|.+.|++++|.+.+++..+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 6777888888888888888888887653 1011 1457777888888888888888888887643
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-12 Score=128.96 Aligned_cols=236 Identities=14% Similarity=0.031 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhC----C-CCCCH
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDL----ETLSIVMDSFIRAGQVYKAIQMLGRLEDF----G-LKFDA 233 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~----~t~~~li~~~~~~g~~~~A~~~~~~~~~~----g-~~~~~ 233 (558)
...+..+...+...|++++|+..|++..+.+. .+. .++..+...+...|++++|++.++++.+. + .....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 34455677788899999999999999988642 233 46788888899999999999998887643 1 12234
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcC------CCCChhhHHHHHHHHHhcCC-----------------HHHHHHHH
Q 008633 234 ESLNVVLWCLCQRLHVGAASSLFNSMKGK------VLFNVMTYNIVISGWSKLGQ-----------------VVEMERVL 290 (558)
Q Consensus 234 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~------~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~ 290 (558)
.++..+...|...|++++|...+++.... .+....++..+...|...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 56777777888888888888887765421 12234467777777777777 77777766
Q ss_pred HHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 291 KEIVAE----GFSP-DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCG-PD----TNAYNAVISNYISVGDFDECMKYY 360 (558)
Q Consensus 291 ~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~ 360 (558)
++..+. +..+ ...++..+...+...|++++|.+.+++..+.... .+ ..++..+...|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 665431 1111 1234555556666666666666666665433110 01 124555555666666666666666
Q ss_pred HHhhhCCC----C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 361 KGMSSYNC----E-PNMDTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 361 ~~m~~~~~----~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
++..+... . ....++..+...|...|++++|...+++..
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55543110 0 012344455555555555555555555543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=130.39 Aligned_cols=240 Identities=13% Similarity=0.050 Sum_probs=164.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhC----CCCC
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD----LETLSIVMDSFIRAGQVYKAIQMLGRLEDF----GLKF 231 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~----~~t~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~~ 231 (558)
......+......+...|++++|...|++..+.+. .+ ..++..+...+...|++++|.+.++++.+. +-.+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 45677788889999999999999999999988742 23 357888899999999999999999887542 2122
Q ss_pred -CHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCC------CChhhHHHHHHHHHhcCC--------------------HH
Q 008633 232 -DAESLNVVLWCLCQRLHVGAASSLFNSMKGKVL------FNVMTYNIVISGWSKLGQ--------------------VV 284 (558)
Q Consensus 232 -~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~------~~~~~~~~li~~~~~~g~--------------------~~ 284 (558)
...++..+...|...|++++|...+++.....+ ....++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 256788889999999999999999987743211 124478888899999999 88
Q ss_pred HHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHH
Q 008633 285 EMERVLKEIVAE----GFSP-DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGC-GPD----TNAYNAVISNYISVGDFD 354 (558)
Q Consensus 285 ~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~ 354 (558)
+|...+++..+. +..+ ...++..+...+...|++++|.+.+++..+... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888888776542 1111 124566666777777777777777777654311 011 235666666777777777
Q ss_pred HHHHHHHHhhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 355 ECMKYYKGMSSY----NCEP-NMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 355 ~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
+|...+++..+. +..+ ...++..+...|...|++++|...+++..+
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 777777665532 1000 034555566666666666666666665543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-09 Score=113.33 Aligned_cols=222 Identities=11% Similarity=0.016 Sum_probs=162.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 321 AIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECM-KYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 321 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
+..+|++.... ++-+...|-..+..+...|+.++|. ++|++.... ++.+...|-..+...-+.|++++|.++|+.+.
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44556666554 2335667777777777888888996 999998864 45567778888888889999999999999887
Q ss_pred HCC---------CCCC------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CC
Q 008633 400 DRG---------IVPS------------TGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGF-GK 457 (558)
Q Consensus 400 ~~~---------~~p~------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~ 457 (558)
... -.|+ ...|...+....+.|..+.|..+|.++.+.-.......|...+..-.+. ++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 631 0132 2357777777777889999999999998761122334444333333344 45
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 458 CGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCP--SRLVYSKLSNKLLASNKLESAYNLF 535 (558)
Q Consensus 458 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 535 (558)
.+.|..+|+...+. ++-+...|...+......|+.+.|..+|++++.....+ ....|...+..-.+.|+.+.+.++.
T Consensus 486 ~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 486 TKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 89999999988875 35566777888888888999999999999998764222 2567888888888999999999999
Q ss_pred HHHHHhcCCc
Q 008633 536 RKIKIARQND 545 (558)
Q Consensus 536 ~~m~~~~~~~ 545 (558)
+++.+.-...
T Consensus 565 ~R~~~~~P~~ 574 (679)
T 4e6h_A 565 KRFFEKFPEV 574 (679)
T ss_dssp HHHHHHSTTC
T ss_pred HHHHHhCCCC
Confidence 9998765543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-12 Score=124.12 Aligned_cols=198 Identities=14% Similarity=0.073 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhC----CCC-CCHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD----LETLSIVMDSFIRAGQVYKAIQMLGRLEDF----GLK-FDAES 235 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~----~~t~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~-~~~~~ 235 (558)
.+......+...|++++|...|+++.+... .+ ...+..+...+...|++++|.+.++++.+. +-. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 445556667788888888888888877532 23 356677777888888888888887776532 111 12345
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhcC---CC---CChhhHHHHHHHHHhcCC--------------------HHHHHHH
Q 008633 236 LNVVLWCLCQRLHVGAASSLFNSMKGK---VL---FNVMTYNIVISGWSKLGQ--------------------VVEMERV 289 (558)
Q Consensus 236 ~~~ll~~~~~~~~~~~A~~~~~~m~~~---~~---~~~~~~~~li~~~~~~g~--------------------~~~A~~~ 289 (558)
+..+...|...|++++|...+++.... .. ....++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 666666777777777777777665321 10 012356666666666666 6666666
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008633 290 LKEIVAE----GFSP-DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGC-----GPDTNAYNAVISNYISVGDFDECMKY 359 (558)
Q Consensus 290 ~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~~~~~li~~~~~~g~~~~A~~~ 359 (558)
+++.... +..+ ...++..+...+...|++++|.+.+++..+... .....++..+...|...|++++|.+.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6554331 1011 122344445555555555555555555432200 00112344444445555555555555
Q ss_pred HHHh
Q 008633 360 YKGM 363 (558)
Q Consensus 360 ~~~m 363 (558)
+++.
T Consensus 246 ~~~a 249 (338)
T 3ro2_A 246 YKKT 249 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.4e-12 Score=122.30 Aligned_cols=275 Identities=11% Similarity=0.051 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHhhcC------CCCChhh
Q 008633 200 TLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD----AESLNVVLWCLCQRLHVGAASSLFNSMKGK------VLFNVMT 269 (558)
Q Consensus 200 t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~------~~~~~~~ 269 (558)
.+......+...|++++|+..++++.+.... + ...+..+...+...|++++|.+.+++.... .+....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4445566777888888888888888775322 3 356777777888888888888887765321 1123456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 008633 270 YNIVISGWSKLGQVVEMERVLKEIVAEGF-SPD----SLTFSFLIEGLGRAGR--------------------IDDAIEV 324 (558)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~--------------------~~~a~~~ 324 (558)
+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 77777777788888888877777654210 011 2355566666666666 6666666
Q ss_pred HHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHH
Q 008633 325 FDTMKEK----GCG-PDTNAYNAVISNYISVGDFDECMKYYKGMSSYNC-EP----NMDTYTRLISGLLKSRKVADALEV 394 (558)
Q Consensus 325 ~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p----~~~~~~~li~~~~~~g~~~~A~~~ 394 (558)
+++..+. +.. ....++..+...|...|++++|.+.+++..+... .+ ...++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6554322 100 0122444555555555555555555555442100 00 012344444444445555555544
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC--
Q 008633 395 FEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCK-LSLTAYKLLLRRLSGFGKCGMLLDLWHEMQES-- 471 (558)
Q Consensus 395 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 471 (558)
+++..+... ..+.. ....++..+...+...|++++|...+++..+.
T Consensus 246 ~~~al~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 246 YKKTLLLAR-------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHHHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------------------------------hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 444332100 00000 01344555666666677777777666665431
Q ss_pred --CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 472 --GY-PSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 472 --~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
+- .....++..+...+...|++++|...++++.+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 10 111336677777888888888888888887764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-10 Score=109.81 Aligned_cols=219 Identities=9% Similarity=-0.018 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------hCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008633 180 DFMCNVLSDMAKEGVNPDLETLSIVMDSFIR-------AGQV-------YKAIQMLGRLEDFGLKFDAESLNVVLWCLCQ 245 (558)
Q Consensus 180 ~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~-------~g~~-------~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 245 (558)
++|..+|++..... +-+...|...+..+.. .|+. ++|..+|++..+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777652 3466677777766653 3664 6777777777762112355567777777777
Q ss_pred cCCHhHHHHHHHHhhcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHH
Q 008633 246 RLHVGAASSLFNSMKGKVLFNVM-TYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLG-RAGRIDDAIE 323 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~~ 323 (558)
.|++++|.++|++.....|.+.. .|..++..+.+.|++++|..+|++..+.. +.+...|........ ..|+.++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777654333443 67777777777777777777777776643 223333433322221 2567777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 324 VFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYN-CEP--NMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 324 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
+|+...+.... +...|..++..+.+.|++++|..+|++..+.. ..| ....|..++..+.+.|+.++|..+++++.+
T Consensus 191 ~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77776655322 56666666777777777777777777776642 233 345666666666666777777777766665
Q ss_pred C
Q 008633 401 R 401 (558)
Q Consensus 401 ~ 401 (558)
.
T Consensus 270 ~ 270 (308)
T 2ond_A 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-11 Score=121.60 Aligned_cols=235 Identities=9% Similarity=-0.019 Sum_probs=112.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCCHHHHH
Q 008633 273 VISGWSKLGQVVEMERVLKEIVAE----GFSP-DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGC------GPDTNAYN 341 (558)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~------~p~~~~~~ 341 (558)
....+...|++++|...+++..+. +-.+ ...++..+...+...|++++|...+++..+.-. .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444455566666666666665542 1011 123455555555556666666555555443210 00123455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008633 342 AVISNYISVGDFDECMKYYKGMSSY----NCEP-NMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEP 416 (558)
Q Consensus 342 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 416 (558)
.+...|...|++++|.+.|++..+. +..+ ...++..+...|...|++++|...+++..+..
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-------------- 254 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF-------------- 254 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------
Confidence 5555555566666665555554421 0000 01244445555555555555555555444310
Q ss_pred HHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcC
Q 008633 417 LCSYGPPHAAMMMYKKARKVGC-KLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQES----GYPSDGEIYEYVIAGLCNIG 491 (558)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g 491 (558)
.+.+. +....++..+...+...|++++|...+++..+. +-+.....+..+...+...|
T Consensus 255 -----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 255 -----------------EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp -----------------HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred -----------------HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 00011 122334444444455555555555544444321 10111122444555566666
Q ss_pred C---HhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008633 492 Q---LENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIKIA 541 (558)
Q Consensus 492 ~---~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 541 (558)
+ +++|+.++++. +..|+ ...+..+...|.+.|++++|.+.+++..+.
T Consensus 318 ~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 318 DEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6 55566555544 22222 345666777777777777777777766543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.6e-10 Score=107.95 Aligned_cols=236 Identities=13% Similarity=0.075 Sum_probs=165.1
Q ss_pred ChhhHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHH
Q 008633 266 NVMTYNIVISGWSKL----GQV----VEMERVLKEIVAEGFSPDSLTFSFLIEGLG-------RAGRI-------DDAIE 323 (558)
Q Consensus 266 ~~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~g~~-------~~a~~ 323 (558)
+...|...+..-.+. ++. ++|..+|++..... +-+...|..+...+. +.|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 345566666654443 233 67788888887753 335667777776665 34775 78888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 324 VFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPN-MD-TYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 324 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
+|++..+.-.+-+...|..++..+.+.|++++|.++|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+.
T Consensus 86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888887312225668888888888888888888888888874 443 33 7888888888888888888888888875
Q ss_pred CCCCCHHHHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC-CCC--CH
Q 008633 402 GIVPSTGTITSFLEPL-CSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESG-YPS--DG 477 (558)
Q Consensus 402 ~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~ 477 (558)
.. .+...|....... ...|+.++|..+|+++.+.. +-+...|..++..+.+.|++++|..+|++..+.. ++| ..
T Consensus 164 ~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 164 AR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp TT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred CC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 42 2333443332221 12688888888888877653 3467777888888888888888888888888752 344 35
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 478 EIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
..|..++....+.|+.++|..+++++.+.
T Consensus 242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 242 EIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57777788888888888888888888765
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.40 E-value=7.8e-11 Score=103.10 Aligned_cols=165 Identities=14% Similarity=0.074 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008633 233 AESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGL 312 (558)
Q Consensus 233 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 312 (558)
..+|..+...|.+.|++++|++.|++.....|-+..+|..+...|.+.|++++|...+....... +-+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 33444444444444444444444444443333444455555555555555555555555544432 12333444444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 313 GRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADAL 392 (558)
Q Consensus 313 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 392 (558)
...++++.+.+.+.+..+.... +...+..+..+|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|+
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence 4555555555555554444322 44445555555555555555555555554432 234445555555555555555555
Q ss_pred HHHHHHHH
Q 008633 393 EVFEEMLD 400 (558)
Q Consensus 393 ~~~~~m~~ 400 (558)
+.|++..+
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-11 Score=126.17 Aligned_cols=196 Identities=11% Similarity=-0.003 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008633 336 DTNAYNAVISNYISVGDF-DECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFL 414 (558)
Q Consensus 336 ~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 414 (558)
+...+..+...|...|++ ++|++.|++..+.. +.+...|..+...|...|++++|.+.|++..+. .|+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 344444444444444444 45555444444332 223444444455555555555555555554443 23344444444
Q ss_pred HHHHhc---------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--------CChhHHHHHHHHHHHCCCC---
Q 008633 415 EPLCSY---------GPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGF--------GKCGMLLDLWHEMQESGYP--- 474 (558)
Q Consensus 415 ~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~--- 474 (558)
..+... |++++|+..++++.+.. +.+...|..+..+|... |++++|+..|++..+.. +
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcc
Confidence 444444 55555555555555433 23345555555555555 66666666666666542 2
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 475 SDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRK 537 (558)
Q Consensus 475 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 537 (558)
-+...|..+..+|...|++++|...|+++.+.. +-+...+..+..++...|++++|.+.+.+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356666667777777777777777777766542 22355666666666666777666655433
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.5e-11 Score=117.52 Aligned_cols=227 Identities=11% Similarity=0.012 Sum_probs=160.2
Q ss_pred HhcCChHHHHHHHHHHHHC--CCCCCHH--HHHHHHHH--HHHhCCHHHHH-----------HHHHHHHhCCCCCC----
Q 008633 174 GRRKFFDFMCNVLSDMAKE--GVNPDLE--TLSIVMDS--FIRAGQVYKAI-----------QMLGRLEDFGLKFD---- 232 (558)
Q Consensus 174 ~~~~~~~~a~~l~~~m~~~--g~~~~~~--t~~~li~~--~~~~g~~~~A~-----------~~~~~~~~~g~~~~---- 232 (558)
.+.+++++|..+++++.+. .+..|.. .|-.++.. ..-.+..+.+. +.++.+.......+
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 5689999999999998764 2333433 33333332 22334444455 66666654221111
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhcC---CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC---C-C
Q 008633 233 AESLNVVLWCLCQRLHVGAASSLFNSMKGK---VLF---NVMTYNIVISGWSKLGQVVEMERVLKEIVAE--GF---S-P 300 (558)
Q Consensus 233 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~---~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~---~-p 300 (558)
...+......+...|++++|...|++.... .+. ...+|..+...|...|++++|...+.+..+. .. . .
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 112223556778899999999999988543 221 3467899999999999999999999988763 11 1 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-CC
Q 008633 301 DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCG-PD----TNAYNAVISNYISVGDFDECMKYYKGMSSY----NC-EP 370 (558)
Q Consensus 301 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p 370 (558)
...+++.+...|...|++++|.+.+++..+.... .+ ..++..+..+|...|++++|.+.|++..+. +. +.
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 2357888889999999999999999988754211 11 247888999999999999999999998762 22 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 371 NMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 371 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
...++..+...|.+.|++++|...+++..+
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456788888899999999999999888754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.1e-12 Score=123.37 Aligned_cols=240 Identities=12% Similarity=0.057 Sum_probs=150.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhC-----
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKE-------GVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDF----- 227 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~-------g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~----- 227 (558)
+.+..+|..+...+...|++++|..+++++.+. .......++..+...+...|++++|.+.++++.+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345677899999999999999999999998763 22334567888889999999999999999888753
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcC--------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 008633 228 -G-LKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGK--------VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE- 296 (558)
Q Consensus 228 -g-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 296 (558)
+ ......++..+...|...|++++|...|++.... .+....++..+...+...|++++|.+++++..+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 1223566778888888888888888888776432 1234556777888888888888888888877664
Q ss_pred -----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCC-------HHHHHHHHHHHHhcCCHHHH
Q 008633 297 -----GFSP-DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKG-------CGPD-------TNAYNAVISNYISVGDFDEC 356 (558)
Q Consensus 297 -----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g-------~~p~-------~~~~~~li~~~~~~g~~~~A 356 (558)
+..| ...++..+...+...|++++|.+.++++.+.. ..+. ...+..+...+...+.+.+|
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 2122 23456777777788888888888887776531 1111 11122222233334444444
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 357 MKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 357 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
...+....... +.+..++..+...|.+.|++++|.+.+++..+
T Consensus 264 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 264 GGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555444321 23344566666666666666666666665543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.6e-12 Score=121.72 Aligned_cols=169 Identities=12% Similarity=0.076 Sum_probs=83.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAE-------GFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK------G 332 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~------g 332 (558)
+..++..+...+...|++++|..+++++.+. ........+..+...+...|++++|...++++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3445555555555556666665555555542 11122344555555555555666555555555433 1
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 008633 333 C-GPDTNAYNAVISNYISVGDFDECMKYYKGMSSY------NC-EPNMDTYTRLISGLLKSRKVADALEVFEEMLDR--- 401 (558)
Q Consensus 333 ~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 401 (558)
. +....++..+...|...|++++|.+.|+++.+. +. +.....+..+...+...|++++|.+.++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 112344555555666666666666666555432 11 112334555555555666666666665555442
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008633 402 ---GIVPS-TGTITSFLEPLCSYGPPHAAMMMYKKAR 434 (558)
Q Consensus 402 ---~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (558)
+..|. ..++..+...+...|++++|...++++.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11111 2234444445555555555555555444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.39 E-value=9.7e-11 Score=102.52 Aligned_cols=167 Identities=17% Similarity=0.058 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHH
Q 008633 197 DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISG 276 (558)
Q Consensus 197 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~ 276 (558)
+...|..+...+.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...++......+.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 44556666666666666666666666666543 22555666666666666666666666666655555566666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 277 WSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDEC 356 (558)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 356 (558)
+...++++.|...+.+..+.. +-+...+..+...+.+.|++++|.+.|++..+.... +..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHH
Confidence 677777777777776666543 234556666666777777777777777776665433 566677777777777777777
Q ss_pred HHHHHHhhhC
Q 008633 357 MKYYKGMSSY 366 (558)
Q Consensus 357 ~~~~~~m~~~ 366 (558)
++.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 7777776654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-11 Score=122.48 Aligned_cols=192 Identities=13% Similarity=0.037 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHhcCCH-hHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008633 232 DAESLNVVLWCLCQRLHV-GAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIE 310 (558)
Q Consensus 232 ~~~~~~~ll~~~~~~~~~-~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 310 (558)
+...+..+...|...|++ ++|.+.|++.....|.+...|..+...|.+.|++++|.+.|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 334444444444444444 44444444443333334444444444444445555555544444443 233344444444
Q ss_pred HHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHhhhCCCC---C
Q 008633 311 GLGRA---------GRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV--------GDFDECMKYYKGMSSYNCE---P 370 (558)
Q Consensus 311 ~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~---p 370 (558)
.+... |++++|.+.+++..+.... +...|..+..+|... |++++|++.|++..+.. + -
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCccc
Confidence 44444 4455555555554444322 344444455555444 44555555555544431 1 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 008633 371 NMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMM 428 (558)
Q Consensus 371 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 428 (558)
+...|..+..+|...|++++|.+.|++..+.. +-+...+..+...+...|++++|+.
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555544432 1122333344444444444444433
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.4e-10 Score=110.13 Aligned_cols=128 Identities=16% Similarity=0.119 Sum_probs=67.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHC----CCCCCHHHHH
Q 008633 410 ITSFLEPLCSYGPPHAAMMMYKKARKV----GCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQES----GYPSDGEIYE 481 (558)
Q Consensus 410 ~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~ 481 (558)
+..+...|...|++++|...+++..+. +.+....++..+...+.+.|++++|...+++..+. +-+.....+.
T Consensus 225 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 304 (378)
T 3q15_A 225 LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFL 304 (378)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 334444444455555555555444430 11222455555666666666666666666665542 1111122344
Q ss_pred HHHHHHHhcCC---HhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 482 YVIAGLCNIGQ---LENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 482 ~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
.+...+...|+ +++|+.++++ .+..|+ ...+..+...|...|++++|.+.+++..+
T Consensus 305 ~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 305 FLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445555566 6666666654 222222 34556677777777777777777777654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-10 Score=113.36 Aligned_cols=308 Identities=11% Similarity=-0.002 Sum_probs=217.7
Q ss_pred CCCCHHHHHHHHHHH--HHhCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHH--HhcCCHhHHH---------HHH
Q 008633 194 VNPDLETLSIVMDSF--IRAGQVYKAIQMLGRLEDF--GLKFD--AESLNVVLWCL--CQRLHVGAAS---------SLF 256 (558)
Q Consensus 194 ~~~~~~t~~~li~~~--~~~g~~~~A~~~~~~~~~~--g~~~~--~~~~~~ll~~~--~~~~~~~~A~---------~~~ 256 (558)
+.|+..+-..+-..| ...+++++|.++++++.+. ....| ...|-.|+..- .-.+.++.+. +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 345666667777777 8899999999999998753 22233 33344444331 1123333334 666
Q ss_pred HHhhcCCCC-C-hh---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 257 NSMKGKVLF-N-VM---TYNIVISGWSKLGQVVEMERVLKEIVAEGF-SPD----SLTFSFLIEGLGRAGRIDDAIEVFD 326 (558)
Q Consensus 257 ~~m~~~~~~-~-~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~ 326 (558)
+.+.....+ + .. .|......+...|++++|...|++..+... .++ ..++..+...|...|++++|...++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 666432111 1 11 233455667889999999999999886411 122 4578888999999999999999999
Q ss_pred HHHHCCC-----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 327 TMKEKGC-----GP-DTNAYNAVISNYISVGDFDECMKYYKGMSSY----NCEP-NMDTYTRLISGLLKSRKVADALEVF 395 (558)
Q Consensus 327 ~m~~~g~-----~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~ 395 (558)
+..+... .+ ...+++.+..+|...|++++|.+.|++..+. +..+ ...++..+...|...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8875411 11 2457888999999999999999999988752 2111 2357788999999999999999999
Q ss_pred HHHHH-----CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHcCCC---hhHHHH
Q 008633 396 EEMLD-----RGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVG----CKLSLTAYKLLLRRLSGFGK---CGMLLD 463 (558)
Q Consensus 396 ~~m~~-----~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~ 463 (558)
++..+ .. +....++..+...+...|++++|...+++..+.. .+.....+..+...+...++ +.+|+.
T Consensus 246 ~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99877 43 2236678888889999999999999999988742 22234556667777778888 777777
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008633 464 LWHEMQESGYPSD-GEIYEYVIAGLCNIGQLENAVLVMEESLR 505 (558)
Q Consensus 464 ~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (558)
.+++. +..|+ ...+..+...|...|++++|...++++.+
T Consensus 325 ~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 325 YFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77663 22222 34677888999999999999999998875
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.4e-10 Score=97.88 Aligned_cols=163 Identities=13% Similarity=0.052 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008633 235 SLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGR 314 (558)
Q Consensus 235 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 314 (558)
.+..+...+...|++++|...++++....+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 344444555555555555555555544444455555555555555566666665555555442 2234455555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008633 315 AGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEV 394 (558)
Q Consensus 315 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 394 (558)
.|++++|.+.++++.+.... +...+..+...+...|++++|.++++++.+.. +.+...+..+...+...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555544322 44555555555666666666666666555432 33445555555555566666666665
Q ss_pred HHHHHH
Q 008633 395 FEEMLD 400 (558)
Q Consensus 395 ~~~m~~ 400 (558)
+++..+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=9.3e-10 Score=108.16 Aligned_cols=300 Identities=11% Similarity=-0.021 Sum_probs=201.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHH
Q 008633 236 LNVVLWCLCQRLHVGAASSLFNSMKGKVLFNV-----MTYNIVISGWSKLGQVVEMERVLKEIVAEGF-SPDS----LTF 305 (558)
Q Consensus 236 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~ 305 (558)
.......+...|++++|...+++.....+++. .+++.+...+...|++++|...+++...... ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34455567778999999999988765443332 2567777888889999999999988765310 1122 335
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC---C-CHHH
Q 008633 306 SFLIEGLGRAGRIDDAIEVFDTMKEK----GCG--P-DTNAYNAVISNYISVGDFDECMKYYKGMSSYNCE---P-NMDT 374 (558)
Q Consensus 306 ~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p-~~~~ 374 (558)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+..-. + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66777888899999999999887653 222 2 2346677888889999999999999987653211 1 2356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHH----HHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHH
Q 008633 375 YTRLISGLLKSRKVADALEVFEEMLDRGIVP--STGTIT----SFLEPLCSYGPPHAAMMMYKKARKVGCKL---SLTAY 445 (558)
Q Consensus 375 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~ 445 (558)
|..+...+...|++++|...+++.......+ ...... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 7778888889999999999999876531111 111111 22334668899999999888876543211 13356
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008633 446 KLLLRRLSGFGKCGMLLDLWHEMQE----SGYPSDG-EIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSN 520 (558)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 520 (558)
..+...+...|++++|...+++..+ .|..++. ..+..+..++...|+.++|...+++..... +. ...+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHH
Confidence 6777888888999999988887753 2322222 256666777888899999999988887541 10 11234
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcC
Q 008633 521 KLLASNKLESAYNLFRKIKIARQ 543 (558)
Q Consensus 521 ~~~~~g~~~~A~~~~~~m~~~~~ 543 (558)
.+...| +....+++.+.....
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHcc--HHHHHHHHHHHhCCC
Confidence 455555 667777777765444
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.9e-09 Score=104.56 Aligned_cols=269 Identities=10% Similarity=-0.003 Sum_probs=158.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC-CC----HHHH
Q 008633 166 YNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLE----TLSIVMDSFIRAGQVYKAIQMLGRLEDFGLK-FD----AESL 236 (558)
Q Consensus 166 ~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~----t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~ 236 (558)
+......+...|++++|...+++........+.. ++..+...+...|++++|.+.+++....... .+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444555667889999999988887754222322 4556667777889999998888877642110 11 2335
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhcC-----C---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHH
Q 008633 237 NVVLWCLCQRLHVGAASSLFNSMKGK-----V---LFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFS----PDSLT 304 (558)
Q Consensus 237 ~~ll~~~~~~~~~~~A~~~~~~m~~~-----~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t 304 (558)
..+...+...|++++|...+++.... . +.....+..+...+...|++++|...+++....... ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66677777888888888887766321 1 112345666777778888888888888777653211 12345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHH----HHHHHHHhcCCHHHHHHHHHHhhhCCCCC---CHHHH
Q 008633 305 FSFLIEGLGRAGRIDDAIEVFDTMKEKGCGP--DTNAYN----AVISNYISVGDFDECMKYYKGMSSYNCEP---NMDTY 375 (558)
Q Consensus 305 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~ 375 (558)
+..+...+...|++++|...+++.......+ ...... ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 6667777777788888887777765431111 111111 23344667777777777777776532111 12234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008633 376 TRLISGLLKSRKVADALEVFEEMLDR----GIVPST-GTITSFLEPLCSYGPPHAAMMMYKKAR 434 (558)
Q Consensus 376 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (558)
..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55666667777777777777665432 111111 133333444445555555555555443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.27 E-value=7e-10 Score=96.58 Aligned_cols=163 Identities=16% Similarity=0.129 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 008633 200 TLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSK 279 (558)
Q Consensus 200 t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~ 279 (558)
.+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++....+.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34444555555555555555555555432 22445555555555666666666666655544444455666666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008633 280 LGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKY 359 (558)
Q Consensus 280 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 359 (558)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666666542 234555666666666666666666666666655322 456666677777777777777777
Q ss_pred HHHhhh
Q 008633 360 YKGMSS 365 (558)
Q Consensus 360 ~~~m~~ 365 (558)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5.9e-08 Score=101.54 Aligned_cols=407 Identities=9% Similarity=0.006 Sum_probs=276.4
Q ss_pred cCCCchHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCC---H
Q 008633 138 RGNLSGEAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQ---V 214 (558)
Q Consensus 138 ~~~~~~~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~---~ 214 (558)
+.....+....|.+-+.+++ .|..+|..++..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.|+ .
T Consensus 44 ~~~~~~d~i~~lE~~l~~np---~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~ 119 (679)
T 4e6h_A 44 RVRDESDVIGKLNDMIEEQP---TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDA 119 (679)
T ss_dssp --CCCSCHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCH
T ss_pred cccCCHHHHHHHHHHHHHCc---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchH
Confidence 33444566777877777664 69999999999999999999999999999987 45677888888888888888 9
Q ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCH--------hHHHHHHHHhhcC--C--CCChhhHHHHHHHHHh--
Q 008633 215 YKAIQMLGRLEDFG-LKFDAESLNVVLWCLCQRLHV--------GAASSLFNSMKGK--V--LFNVMTYNIVISGWSK-- 279 (558)
Q Consensus 215 ~~A~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~~~~--------~~A~~~~~~m~~~--~--~~~~~~~~~li~~~~~-- 279 (558)
+.+.++|++..... ..|++..|...+....+.++. +.+.++|+..... . +.+...|...+.....
T Consensus 120 ~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~ 199 (679)
T 4e6h_A 120 AVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWK 199 (679)
T ss_dssp HHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcc
Confidence 99999999999764 247888998888877666554 3345778765432 2 3345678888876542
Q ss_pred -------cCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhc----------CCHHHHHHHHHHHHHC--CCC---
Q 008633 280 -------LGQVVEMERVLKEIVAEGFSPDSLTFS---FLIEGLGRA----------GRIDDAIEVFDTMKEK--GCG--- 334 (558)
Q Consensus 280 -------~g~~~~A~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~----------g~~~~a~~~~~~m~~~--g~~--- 334 (558)
.++++.+.++|++.+......-..+|. .+...+... .+++.|...+.++... ++.
T Consensus 200 ~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 200 PVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcc
Confidence 345778899999988532221223443 333332100 1123344444443211 111
Q ss_pred ------------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 335 ------------P-----D---TNAYNAVISNYISVG-------DFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRK 387 (558)
Q Consensus 335 ------------p-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 387 (558)
| + ...|...+..--..+ ..+.+..+|++..... +-+...|...+.-+...|+
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSC
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCc
Confidence 1 0 134555544332222 1234567788887652 4577788888888888999
Q ss_pred HHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC---------CCCC------------HHHH
Q 008633 388 VADAL-EVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVG---------CKLS------------LTAY 445 (558)
Q Consensus 388 ~~~A~-~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------~~~~------------~~~~ 445 (558)
.++|. ++|++.... ++.+...+...+......|+++.|..+|+++.+.. ..|+ ..+|
T Consensus 359 ~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 99997 999999874 34455566677777888999999999999987631 0131 3467
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008633 446 KLLLRRLSGFGKCGMLLDLWHEMQES-GYPSDGEIYEYVIAGLCNI-GQLENAVLVMEESLRKGFCPSRLVYSKLSNKLL 523 (558)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 523 (558)
...+....+.|..+.|..+|....+. + ......|...+..-.+. ++.+.|..+|+..++. ++-+...+...++...
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 78888888889999999999999875 2 22334444333333344 4599999999999987 3345677788888888
Q ss_pred hcCCHHHHHHHHHHHHHhcCC-chhhhhhc
Q 008633 524 ASNKLESAYNLFRKIKIARQN-DYARRLWR 552 (558)
Q Consensus 524 ~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~ 552 (558)
..|+.+.|+.+|++....... .....+|.
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~ 545 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQ 545 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999998865542 24555553
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=7.3e-10 Score=117.33 Aligned_cols=164 Identities=13% Similarity=0.041 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 008633 198 LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGW 277 (558)
Q Consensus 198 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~ 277 (558)
..+|+.+...+.+.|++++|++.|++..+.. +-+..+++.+..+|.+.|++++|++.|++..+..|-+..+|+.+..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455555555555555555555555555432 113444555555555555555555555544443333444555555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 278 SKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECM 357 (558)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 357 (558)
.+.|++++|++.|++..+.. +-+...|+.+..++.+.|++++|++.|++..+.... +...+..+..+|...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHH
Confidence 55555555555555544432 112344444444444444444444444444444322 3444444444444444444444
Q ss_pred HHHHHhh
Q 008633 358 KYYKGMS 364 (558)
Q Consensus 358 ~~~~~m~ 364 (558)
+.++++.
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-09 Score=116.17 Aligned_cols=168 Identities=10% Similarity=-0.059 Sum_probs=148.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
-+..+|+.+..++.+.|++++|+..|++..+.. +-+..+|..+..+|.+.|++++|++.|++..+... -+...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 457889999999999999999999999998864 33688999999999999999999999999998652 3678999999
Q ss_pred HHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 241 WCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDD 320 (558)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 320 (558)
.+|.+.|++++|++.|++..+..|-+..+|+.+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999999877667789999999999999999999999999998864 2256789999999999999999
Q ss_pred HHHHHHHHHHC
Q 008633 321 AIEVFDTMKEK 331 (558)
Q Consensus 321 a~~~~~~m~~~ 331 (558)
|.+.++++.+.
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99998887654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.16 E-value=6.3e-10 Score=104.20 Aligned_cols=156 Identities=13% Similarity=-0.002 Sum_probs=87.5
Q ss_pred hcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHH
Q 008633 175 RRKFFDFMCNVLSDMAKE-------GVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDF------GL-KFDAESLNVVL 240 (558)
Q Consensus 175 ~~~~~~~a~~l~~~m~~~-------g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~------g~-~~~~~~~~~ll 240 (558)
..|++++|...+++..+. ..+....++..+...+...|++++|++.++++.+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 445666666655555431 11223556777777777777777777777776643 11 12234566666
Q ss_pred HHHHhcCCHhHHHHHHHHhhcC--------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHH
Q 008633 241 WCLCQRLHVGAASSLFNSMKGK--------VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE------GFSP-DSLTF 305 (558)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~ 305 (558)
.+|...|++++|.+.|++.... .+....++..+...+...|++++|...+++..+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6666666666666666655321 1223445566666666666666666666665543 1111 23345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 306 SFLIEGLGRAGRIDDAIEVFDTMKE 330 (558)
Q Consensus 306 ~~ll~~~~~~g~~~~a~~~~~~m~~ 330 (558)
..+...+...|++++|.+.++++.+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555666666665555543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.7e-09 Score=94.17 Aligned_cols=196 Identities=10% Similarity=-0.041 Sum_probs=155.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
.|...|......+...|++++|...|++..+....++...+..+..++...|++++|++.+++..+.... +..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4668888999999999999999999999988764478888888999999999999999999999986533 667899999
Q ss_pred HHHHhcCCHhHHHHHHHHhhcCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 008633 241 WCLCQRLHVGAASSLFNSMKGKVLFNV-------MTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD---SLTFSFLIE 310 (558)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~ 310 (558)
.+|...|++++|...|++.....|.+. ..|..+...+...|++++|+..|++..+. .|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 999999999999999999877666666 56888899999999999999999999875 455 456666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 008633 311 GLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYN 367 (558)
Q Consensus 311 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 367 (558)
++... +..+++++...+.. +...|.... ....+.+++|+..|++..+..
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 76544 34455666555433 444554443 344567899999999998763
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.14 E-value=5.7e-10 Score=104.49 Aligned_cols=137 Identities=15% Similarity=0.064 Sum_probs=111.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhC-----
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKE------GV-NPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDF----- 227 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~------g~-~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~----- 227 (558)
+....+|..+...+...|++++|...+++..+. +- +....++..+...+...|++++|++.++++.+.
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 345778999999999999999999999998764 21 223567888999999999999999999998764
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcC--------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008633 228 -G-LKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGK--------VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 228 -g-~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (558)
. .+....++..+...|...|++++|...|++.... .+....++..+...+.+.|++++|...+++..+.
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 1234577888999999999999999999987542 3334667889999999999999999999998763
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-08 Score=92.79 Aligned_cols=201 Identities=13% Similarity=0.088 Sum_probs=157.6
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHH
Q 008633 196 PDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVIS 275 (558)
Q Consensus 196 ~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~ 275 (558)
.|+..+......+...|++++|++.|++..+....++...+..+..++...|++++|.+.|++.....|.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 46788888999999999999999999999987654677888889999999999999999999998877778889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 008633 276 GWSKLGQVVEMERVLKEIVAEGFSPDS-------LTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPD---TNAYNAVIS 345 (558)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~ 345 (558)
.+...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.+++..+. .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 9999999999999999998864 2234 45777888888999999999999999876 343 456777777
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 008633 346 NYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGT 409 (558)
Q Consensus 346 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 409 (558)
+|...| ..+++++...+ ..+...|.... ....+.+++|...+++..+. .|+...
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~ 215 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTE 215 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHH
Confidence 776544 44455555443 33444454443 23456789999999999885 355433
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=5.7e-09 Score=98.69 Aligned_cols=130 Identities=9% Similarity=0.011 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCC----CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----
Q 008633 268 MTYNIVISGWSKL-GQVVEMERVLKEIVAEGF----SPD-SLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDT---- 337 (558)
Q Consensus 268 ~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~----~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~---- 337 (558)
.+|+.+...|... |++++|+..|++..+... ... ..++..+...+.+.|++++|...|++..+.......
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 3556666666664 777777766666654210 000 245666666777777777777777776665432211
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 008633 338 --NAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNM------DTYTRLISGLL--KSRKVADALEVFEEML 399 (558)
Q Consensus 338 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~--~~g~~~~A~~~~~~m~ 399 (558)
..|..+..++...|++++|...|++..+. .|+. ..+..++.++. ..+++++|+..|+++.
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 14556666677777777777777776643 2221 12333445443 3455667776665543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=8.8e-09 Score=97.38 Aligned_cols=216 Identities=12% Similarity=0.073 Sum_probs=136.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 008633 317 RIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSY----NCEPN-MDTYTRLISGLLKSRKVADA 391 (558)
Q Consensus 317 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A 391 (558)
++++|...|++. ...|...|++++|.+.|++..+. |-.++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666654 34566777777777777766542 21111 45677777777778888888
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHcCCChhH
Q 008633 392 LEVFEEMLDR----GIVP-STGTITSFLEPLCSY-GPPHAAMMMYKKARKVGCKL-S----LTAYKLLLRRLSGFGKCGM 460 (558)
Q Consensus 392 ~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~ 460 (558)
+..+++..+. |-.. ...++..+...|... |++++|+..|++..+..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 7777776542 1100 124566777777775 88888888888776532110 1 3467778888888888888
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH--hcC
Q 008633 461 LLDLWHEMQESGYPSDG------EIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSR------LVYSKLSNKLL--ASN 526 (558)
Q Consensus 461 A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~l~~~~~--~~g 526 (558)
|+..|++..+....... ..|..+..++...|++++|...+++.++. .|+. ..+..++.+|. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 88888888875322211 15667777888888888888888887753 3431 23444556664 456
Q ss_pred CHHHHHHHHHHHHHhcCCchhhhhh
Q 008633 527 KLESAYNLFRKIKIARQNDYARRLW 551 (558)
Q Consensus 527 ~~~~A~~~~~~m~~~~~~~~~~~~~ 551 (558)
++++|.+.++++. .+.|....+|
T Consensus 255 ~~~~A~~~~~~~~--~l~~~~~~~~ 277 (292)
T 1qqe_A 255 QLSEHCKEFDNFM--RLDKWKITIL 277 (292)
T ss_dssp THHHHHHHHTTSS--CCCHHHHHHH
T ss_pred HHHHHHHHhccCC--ccHHHHHHHH
Confidence 7888888776664 3444444333
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.02 E-value=7.6e-08 Score=89.59 Aligned_cols=10 Identities=0% Similarity=0.016 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 008633 495 NAVLVMEESL 504 (558)
Q Consensus 495 ~A~~~~~~m~ 504 (558)
+|.+++.++.
T Consensus 271 ~a~~l~~qL~ 280 (310)
T 3mv2_B 271 DTEDLTNQLV 280 (310)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.5e-08 Score=81.37 Aligned_cols=129 Identities=9% Similarity=0.035 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLC 244 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 244 (558)
+|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|.+.++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45556666666666666666666665543 2345556666666666666666666666665543 224445555555555
Q ss_pred hcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 245 QRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
..|++++|.+.++++....+.+...+..++..+.+.|++++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 556666666655555444444455555555555555555555555555544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-08 Score=81.12 Aligned_cols=127 Identities=18% Similarity=0.286 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 271 NIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV 350 (558)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 350 (558)
..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|.+.++++.+.+.. +...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHh
Confidence 333444444444444444444443322 112333334444444444444444444444433211 333444444444444
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 351 GDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 351 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
|++++|.++++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 44444444444444332 22334444444444444455555444444443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.97 E-value=2.2e-07 Score=86.52 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=70.9
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 252 ASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFS-PDSLTFSFLIEGLGRAGRIDDAIEVFDTMKE 330 (558)
Q Consensus 252 A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 330 (558)
|...|++.....+++..++..+..++...|++++|++++.+....|.. -+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455555544333334444455556666666666666666655444321 1334455555556666666666666666554
Q ss_pred CCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 331 KGCGP-----DTNAYNAVISN--YISVG--DFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 331 ~g~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
. .| +..+...|..+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 22 12333333333 22222 566666666665443 2332222333335555566666666655443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.94 E-value=5.3e-08 Score=90.26 Aligned_cols=188 Identities=8% Similarity=0.026 Sum_probs=117.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC-C-CCHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD---LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGL-K-FDAE 234 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~---~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~-~~~~ 234 (558)
+.+...+-.+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++.+.|++++|+..|+++.+... . ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3456677777888888899999999998888763 223 66778888888888999999998888887532 1 1245
Q ss_pred HHHHHHHHHHh--------cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008633 235 SLNVVLWCLCQ--------RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFS 306 (558)
Q Consensus 235 ~~~~ll~~~~~--------~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 306 (558)
.+..+..++.. .|++++|...|+++....|.+...+..+.... .+... -...+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~--------------~~~~~----~~~~~~ 152 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIR--------------ELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH--------------HHHHH----HHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHH--------------HHHHH----HHHHHH
Confidence 66677777777 88888888888887665554444442221110 00000 001133
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhhC
Q 008633 307 FLIEGLGRAGRIDDAIEVFDTMKEKGCGP--DTNAYNAVISNYISV----------GDFDECMKYYKGMSSY 366 (558)
Q Consensus 307 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 366 (558)
.+...+.+.|++++|...|+.+.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 44555666666666666666665543221 233455555556544 6666666666666654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.93 E-value=8.2e-07 Score=83.42 Aligned_cols=228 Identities=8% Similarity=0.054 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH----Hhc---CCHH
Q 008633 319 DDAIEVFDTMKEKGCGPDTNAYNAVISNYISVG--DFDECMKYYKGMSSYNCEPNMDTYTRLISGL----LKS---RKVA 389 (558)
Q Consensus 319 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~----~~~---g~~~ 389 (558)
++|+++.+.++..... +..+|+.--..+...| ++++++++++.+...+ +.+..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3555555555555433 4445555555555555 6666666666665543 33444444433333 333 5566
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC------hhHH
Q 008633 390 DALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPH--AAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGK------CGML 461 (558)
Q Consensus 390 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~A 461 (558)
+++++++.+.+.. +-+...++.-.-.+...|.++ ++++.++++.+.+ .-+...|+.-...+...++ ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 6666666666543 234444444444445555555 6666666666654 3455555555555555555 7888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 462 LDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLEN-AVLVMEESLRKG--FCPSRLVYSKLSNKLLASNKLESAYNLFRKI 538 (558)
Q Consensus 462 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 538 (558)
++.++.+.... +-|...|+.+...+.+.|+..+ +..+.+++.+.+ -..+...+..++++|.+.|+.++|.++++++
T Consensus 206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 88888888765 5578889888888888887544 555666665432 1346788889999999999999999999998
Q ss_pred HHhcCCchhhhhhc
Q 008633 539 KIARQNDYARRLWR 552 (558)
Q Consensus 539 ~~~~~~~~~~~~~~ 552 (558)
.+ ...|....||.
T Consensus 285 ~~-~~Dpir~~yW~ 297 (306)
T 3dra_A 285 KS-KYNPIRSNFWD 297 (306)
T ss_dssp HH-TTCGGGHHHHH
T ss_pred Hh-ccChHHHHHHH
Confidence 63 36777778885
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.93 E-value=5.6e-08 Score=90.11 Aligned_cols=182 Identities=12% Similarity=0.076 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCC---CChhhH
Q 008633 197 DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD---AESLNVVLWCLCQRLHVGAASSLFNSMKGKVL---FNVMTY 270 (558)
Q Consensus 197 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~---~~~~~~ 270 (558)
+...+-.....+.+.|++++|++.|+++.+.... + ...+..+..+|.+.|++++|...|++.....| ....++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4556666666666777777777777777654321 2 45566666667777777777777766654322 123445
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 008633 271 NIVISGWSK--------LGQVVEMERVLKEIVAEGFSPDS-LTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYN 341 (558)
Q Consensus 271 ~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 341 (558)
..+..++.. .|++++|...|++..+.. |+. .....+. .+..+... ....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHHH----HHHHHH
Confidence 566666666 666666666666666542 221 1111110 00000000 011235
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHC
Q 008633 342 AVISNYISVGDFDECMKYYKGMSSYNCEPN----MDTYTRLISGLLKS----------RKVADALEVFEEMLDR 401 (558)
Q Consensus 342 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 401 (558)
.+...|.+.|++++|+..|+++.+.. |+ ...+..+..+|... |++++|...++++.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 56778888888888888888887642 32 34566777777755 7788888888888775
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.89 E-value=9.7e-08 Score=85.13 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=24.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 239 VLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 239 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
+..+|.+.|++++|...|++.....|.+...|..+...+...|++++|...|++..+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444444333333444444444444444444444444444443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-07 Score=84.61 Aligned_cols=135 Identities=15% Similarity=0.077 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008633 270 YNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYIS 349 (558)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 349 (558)
++.+...+.+.|++++|+..|++..+.. +-+...+..+...+...|++++|...|++..+.... +..++..+..+|..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 3447778888888888888888887764 235677777888888888888888888888777544 66777777777765
Q ss_pred cCC--HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008633 350 VGD--FDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTI 410 (558)
Q Consensus 350 ~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 410 (558)
.|+ .+.+...++..... .|....+..+..++...|++++|+..|++..+. .|+....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~ 193 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSP--TKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHHHHHC---CC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHH
T ss_pred HhHHHHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHH
Confidence 543 34455555555421 222233444455566677888888888877764 4665433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.86 E-value=7.5e-08 Score=91.68 Aligned_cols=184 Identities=10% Similarity=-0.020 Sum_probs=97.4
Q ss_pred HHHhcCCHHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHH
Q 008633 346 NYISVGDFDECMKYYKGMSSY----NCEP-NMDTYTRLISGLLKSRKVADALEVFEEMLDRG---IVPS--TGTITSFLE 415 (558)
Q Consensus 346 ~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~--~~~~~~ll~ 415 (558)
.|...|++++|.+.|.+..+. +-.. -..+|+.+...|...|++++|+..|++..+.- -.+. ..++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444455555555555544321 1000 12344555555555566666655555543210 0111 234445555
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHcCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 008633 416 PLCSYGPPHAAMMMYKKARKVGCKL-----SLTAYKLLLRRLSGFGKCGMLLDLWHEMQES----GYPSD-GEIYEYVIA 485 (558)
Q Consensus 416 ~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~ 485 (558)
.|.. |++++|+..|++..+..... ...++..+...|...|++++|+..|++..+. +..+. ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 5555 67777776666655421000 1355666777777788888888777776642 21111 125555666
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 008633 486 GLCNIGQLENAVLVMEESLRKGFCPS------RLVYSKLSNKLLASNKLESAYNL 534 (558)
Q Consensus 486 ~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~l~~~~~~~g~~~~A~~~ 534 (558)
++...|++++|...+++.+ . .|+ ......++.++ ..|+.+.+.++
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 6667788888888888877 3 232 12344455544 56776666553
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-06 Score=80.59 Aligned_cols=223 Identities=7% Similarity=-0.009 Sum_probs=159.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc-
Q 008633 174 GRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAG--QVYKAIQMLGRLEDFGLKFDAESLNVVLWCL----CQR- 246 (558)
Q Consensus 174 ~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~----~~~- 246 (558)
.+....++|+.+++.+.... +-+..+|+.--..+...| ++++++++++.+.....+ +..+|+.--..+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 33444568888888888764 224556777667777777 888888888888876533 445565554444 444
Q ss_pred --CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----
Q 008633 247 --LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVV--EMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGR----- 317 (558)
Q Consensus 247 --~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~----- 317 (558)
+++++++++++.+....|-|..+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.-...+.+.++
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhh
Confidence 67888888888887777778888888887788888877 88888888887653 366777766666666665
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 318 -IDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDF-DECMKYYKGMSSYN--CEPNMDTYTRLISGLLKSRKVADALE 393 (558)
Q Consensus 318 -~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~ 393 (558)
++++++.++.++...+. |...|+.+...+.+.|+. +.+..+..++.+.+ -..+...+..+...|.+.|+.++|.+
T Consensus 201 ~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 77888888888877655 778888888888777774 33555666655432 13466777788888888888888888
Q ss_pred HHHHHHH
Q 008633 394 VFEEMLD 400 (558)
Q Consensus 394 ~~~~m~~ 400 (558)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888775
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.5e-08 Score=105.98 Aligned_cols=173 Identities=12% Similarity=0.003 Sum_probs=122.4
Q ss_pred HHhCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhc
Q 008633 209 IRAGQVYKAIQMLGRLE--------DFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKL 280 (558)
Q Consensus 209 ~~~g~~~~A~~~~~~~~--------~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~ 280 (558)
...|++++|++.++++. +.. +.+...+..+..+|.+.|++++|.+.|++.....|.+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56788888888888877 322 335567777777888888888888888877665566777888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 281 GQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYY 360 (558)
Q Consensus 281 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 360 (558)
|++++|.+.|++..+.. +-+...|..+..++.+.|++++ .+.|++..+.... +...|..+..+|.+.|++++|++.|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888877653 2245667777777788888888 8888887776544 6667777888888888888888888
Q ss_pred HHhhhCCCCCC-HHHHHHHHHHHHhcCC
Q 008633 361 KGMSSYNCEPN-MDTYTRLISGLLKSRK 387 (558)
Q Consensus 361 ~~m~~~~~~p~-~~~~~~li~~~~~~g~ 387 (558)
++..+. .|+ ...|..+..++...++
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC----
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCC
Confidence 877765 343 4566666666655444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.8e-07 Score=78.78 Aligned_cols=176 Identities=10% Similarity=-0.030 Sum_probs=92.2
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHH
Q 008633 356 CMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYG----PPHAAMMMYK 431 (558)
Q Consensus 356 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~ 431 (558)
|.+.|++..+.| +...+..+...|...+++++|+..|++..+.| +...+..+...|.. + +.++|..+|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 344444444432 34444444444444555555555555544433 23333333333333 3 4555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHhHHHHHHHH
Q 008633 432 KARKVGCKLSLTAYKLLLRRLSG----FGKCGMLLDLWHEMQESGYP-SDGEIYEYVIAGLCN----IGQLENAVLVMEE 502 (558)
Q Consensus 432 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~ 502 (558)
+..+.+ +...+..|...|.. .+++++|++.|++..+.|.. .+...+..|...|.. .++.++|+.+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554443 34444555555554 56666666666666655411 014556666666666 5667777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHhcC
Q 008633 503 SLRKGFCPSRLVYSKLSNKLLAS-N-----KLESAYNLFRKIKIARQ 543 (558)
Q Consensus 503 m~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 543 (558)
..+. ..+...+..|...|... | +.++|.+++++..+.|.
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7665 12334555666666543 2 67777777777666543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.3e-08 Score=102.88 Aligned_cols=186 Identities=10% Similarity=-0.017 Sum_probs=153.2
Q ss_pred HhcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008633 174 GRRKFFDFMCNVLSDMA--------KEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQ 245 (558)
Q Consensus 174 ~~~~~~~~a~~l~~~m~--------~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 245 (558)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|++.++++.+.. +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 78899999999999998 432 4467889999999999999999999999999764 3377899999999999
Q ss_pred cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 246 RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVF 325 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 325 (558)
.|++++|.+.|++.....|.+...|..+..++.+.|++++ ++.|++..+.. +-+...|..+..++.+.|++++|.+.|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999987777789999999999999999999 99999998864 336778999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHhh
Q 008633 326 DTMKEKGCGPDTNAYNAVISNYISVGD--------FDECMKYYKGMS 364 (558)
Q Consensus 326 ~~m~~~g~~p~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~ 364 (558)
+++.+.... +...+..+..++...++ +++|.+.+..+.
T Consensus 558 ~~al~l~P~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 558 DEVPPTSRH-FTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HTSCTTSTT-HHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HhhcccCcc-cHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 998876433 46677778888766554 555555555443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.81 E-value=6e-07 Score=81.05 Aligned_cols=188 Identities=9% Similarity=-0.047 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC-CH-HHHH
Q 008633 162 DVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVN-P-DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKF-DA-ESLN 237 (558)
Q Consensus 162 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~-~-~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~-~~-~~~~ 237 (558)
+...+..+...+.+.|++++|+..|+++.+.... + ....+..+..++.+.|++++|++.|+++.+..... .. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666777888999999999999999875321 1 14578888899999999999999999988754321 11 2344
Q ss_pred HHHHHHHh------------------cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008633 238 VVLWCLCQ------------------RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFS 299 (558)
Q Consensus 238 ~ll~~~~~------------------~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 299 (558)
.+..++.+ .|+.++|...|+++....|-+...+........ +...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~~----- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRLA----- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHHH-----
Confidence 44444443 456777777777777665555544433221110 000000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 008633 300 PDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPD--TNAYNAVISNYISVGDFDECMKYYKGMSSYN 367 (558)
Q Consensus 300 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 367 (558)
.....+...+.+.|++++|...|+.+.+...... ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1123456778889999999999999988743311 2467788899999999999999999888764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.5e-07 Score=81.03 Aligned_cols=175 Identities=13% Similarity=0.095 Sum_probs=102.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 008633 321 AIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSR----KVADALEVFE 396 (558)
Q Consensus 321 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~~ 396 (558)
|.+.|++..+.| +...+..|...|...+++++|.++|++..+.| +...+..|...|.. + ++++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555555443 44555555566666666666666666665543 34445555555554 4 5666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHc----CCChhHHHHHHHH
Q 008633 397 EMLDRGIVPSTGTITSFLEPLCS----YGPPHAAMMMYKKARKVGCK-LSLTAYKLLLRRLSG----FGKCGMLLDLWHE 467 (558)
Q Consensus 397 ~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 467 (558)
+..+.| +...+..+...|.. .+++++|+.+|++..+.+.. .....+..|...|.. .++.++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 665543 33444444444444 55666666666666655421 114556666666666 6677778888777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----CHhHHHHHHHHHHhCC
Q 008633 468 MQESGYPSDGEIYEYVIAGLCNI-G-----QLENAVLVMEESLRKG 507 (558)
Q Consensus 468 m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 507 (558)
..+. ..+...+..|...|... | +.++|..++++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7765 22444566666666543 2 7888888888877766
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.80 E-value=2.6e-05 Score=78.99 Aligned_cols=343 Identities=8% Similarity=-0.061 Sum_probs=201.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHh-CCCC-CCHHHHHHHHHHHH----hcCCH
Q 008633 177 KFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQ-VYKAIQMLGRLED-FGLK-FDAESLNVVLWCLC----QRLHV 249 (558)
Q Consensus 177 ~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~-~~~A~~~~~~~~~-~g~~-~~~~~~~~ll~~~~----~~~~~ 249 (558)
|+++.+..+|++.... .|+...|..-+....+.+. .+....+|+.+.. .|.. .+...|...+..+. ..+++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 6677777777777664 3577777777766666553 3445566666553 2432 24556666665543 23456
Q ss_pred hHHHHHHHHhhcCCCCC-h-hhHHHHHHHHH-------------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008633 250 GAASSLFNSMKGKVLFN-V-MTYNIVISGWS-------------KLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGR 314 (558)
Q Consensus 250 ~~A~~~~~~m~~~~~~~-~-~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 314 (558)
+.+.++|++... .|+. . ..|......-. ..+.+..|..+++++...--..+...|...+.--..
T Consensus 106 ~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 106 EKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 677777777655 2221 1 11111111000 012233344444444321000123345444443222
Q ss_pred cC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 315 AG--R-----IDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRK 387 (558)
Q Consensus 315 ~g--~-----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 387 (558)
.+ - .+.+..+|+++.... +-+...|-..+..+.+.|+.++|.++|++.... +.+...|. .|....+
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e 257 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMD 257 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTT
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcc
Confidence 11 1 345678888888764 346778888888888999999999999999886 33333332 2222222
Q ss_pred HHHHHHHHHHHHHC---------CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 008633 388 VADALEVFEEMLDR---------GIVP---STGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGF 455 (558)
Q Consensus 388 ~~~A~~~~~~m~~~---------~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 455 (558)
.++. ++.+.+. +..+ ....|...+....+.++.+.|..+|+++ +.. ..+...|......-...
T Consensus 258 ~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 258 EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA 332 (493)
T ss_dssp CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH
T ss_pred hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH
Confidence 2222 2222211 0011 1244566666666678899999999999 322 23445554333222222
Q ss_pred -CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008633 456 -GKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNL 534 (558)
Q Consensus 456 -g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 534 (558)
++.+.|..+|+...+.- +-+...|...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+
T Consensus 333 ~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v 406 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFREL 406 (493)
T ss_dssp HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 36999999999988742 3345567778888888999999999999872 2478888888877888999999998
Q ss_pred HHHHHH
Q 008633 535 FRKIKI 540 (558)
Q Consensus 535 ~~~m~~ 540 (558)
+++...
T Consensus 407 ~~~~~~ 412 (493)
T 2uy1_A 407 VDQKMD 412 (493)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.4e-08 Score=82.92 Aligned_cols=120 Identities=9% Similarity=-0.033 Sum_probs=59.0
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008633 244 CQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIE 323 (558)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 323 (558)
...|++++|++.++......|.+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|..
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 334455555555555443333334444455555555555555555555555432 1234455555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHhhh
Q 008633 324 VFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKY-YKGMSS 365 (558)
Q Consensus 324 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~ 365 (558)
.|++..+.... +..++..+...|.+.|++++|.+. +++..+
T Consensus 87 ~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 87 CYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555554322 444555555555555555443332 344443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.80 E-value=7.8e-08 Score=83.15 Aligned_cols=156 Identities=10% Similarity=0.011 Sum_probs=70.4
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEG-LGRAGRI 318 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~ 318 (558)
...+.+.|++++|...|++.....|.+...+..+...+.+.|++++|...+++..... |+...+..+... +...+..
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~ 90 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAE 90 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhccc
Confidence 3344444555555555544433333344555555555555555555555555443322 122221111101 1111111
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 319 DDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEP-NMDTYTRLISGLLKSRKVADALEVFEE 397 (558)
Q Consensus 319 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 397 (558)
.+|...+++..+.... +...+..+..++...|++++|...|+++.+..-.+ +...+..+...+...|+.++|...|++
T Consensus 91 ~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 91 SPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp CHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred chHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 2344455555444322 44555555555555555555555555555442111 133455555555555555555555554
Q ss_pred H
Q 008633 398 M 398 (558)
Q Consensus 398 m 398 (558)
.
T Consensus 170 a 170 (176)
T 2r5s_A 170 Q 170 (176)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-07 Score=89.52 Aligned_cols=164 Identities=13% Similarity=0.047 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHH
Q 008633 197 DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISG 276 (558)
Q Consensus 197 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~ 276 (558)
+...+..+...+...|++++|++.|+++.+.. +-+...+..+...+.+.|++++|...++++....|.+..........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 34455555555556666666666666655443 12444555555555555555555555555543322111122222222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 008633 277 WSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGP-DTNAYNAVISNYISVGDFDE 355 (558)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~ 355 (558)
+.+.++.++|...+++..... +.+...+..+...+...|++++|...+.++.+..... +...+..++..|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 334444444555554444432 1233444444445555555555555555544442221 13344444444444444444
Q ss_pred HHHHHHH
Q 008633 356 CMKYYKG 362 (558)
Q Consensus 356 A~~~~~~ 362 (558)
|...|++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-07 Score=97.82 Aligned_cols=155 Identities=9% Similarity=-0.056 Sum_probs=89.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 008633 176 RKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSL 255 (558)
Q Consensus 176 ~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~ 255 (558)
.|++++|...+++..+.. +.+...+..+...+...|++++|++.+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 356677777777666542 2346667777777777777777777777776653 22456666677777777777777777
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 008633 256 FNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRA---GRIDDAIEVFDTMKEKG 332 (558)
Q Consensus 256 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~---g~~~~a~~~~~~m~~~g 332 (558)
|++.....+.+...|..+...+.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 776655555566667777777777777777777777766643 22455666666666666 67777777776666654
Q ss_pred C
Q 008633 333 C 333 (558)
Q Consensus 333 ~ 333 (558)
.
T Consensus 159 p 159 (568)
T 2vsy_A 159 V 159 (568)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-07 Score=87.86 Aligned_cols=167 Identities=11% Similarity=0.021 Sum_probs=115.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHH-
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNV- 238 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~- 238 (558)
+.+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|.+.++++.... |+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3445666777777778888888888888777653 3356777777788888888888888887776543 34433222
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCC
Q 008633 239 VLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFS-PDSLTFSFLIEGLGRAGR 317 (558)
Q Consensus 239 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~g~ 317 (558)
....+.+.++.+.|...+++.....|.+...+..+...+...|++++|...|+++.+.... .+...+..+...+...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 2233556677777777777776666667778888888888888888888888887775322 125567777777777888
Q ss_pred HHHHHHHHHHHH
Q 008633 318 IDDAIEVFDTMK 329 (558)
Q Consensus 318 ~~~a~~~~~~m~ 329 (558)
.++|...+++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 777777776654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.2e-07 Score=96.74 Aligned_cols=154 Identities=7% Similarity=-0.097 Sum_probs=101.6
Q ss_pred hCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 008633 211 AGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVL 290 (558)
Q Consensus 211 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 290 (558)
.|++++|++.++++.+.. +.+...+..+...|.+.|++++|.+.|++.....+.+...|..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467788888888777653 2356777778888888888888888888877766667777888888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHhhhCC
Q 008633 291 KEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV---GDFDECMKYYKGMSSYN 367 (558)
Q Consensus 291 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~ 367 (558)
++..+.. +.+...+..+..++.+.|++++|.+.+++..+.... +...+..+..++... |+.++|.+.+++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 8877653 234667777777788888888888888877776433 566777777777777 78888888888777654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.76 E-value=6.7e-07 Score=80.72 Aligned_cols=83 Identities=7% Similarity=-0.061 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChh---hHH
Q 008633 197 DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLK-F-DAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVM---TYN 271 (558)
Q Consensus 197 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~-~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~---~~~ 271 (558)
+...+..+...+.+.|++++|++.|+++.+.... + ....+..+..+|.+.|++++|...|+++....|.+.. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455556667777888888888888887764322 1 1356667777778888888888888777654443332 344
Q ss_pred HHHHHHHh
Q 008633 272 IVISGWSK 279 (558)
Q Consensus 272 ~li~~~~~ 279 (558)
.+..++.+
T Consensus 83 ~~g~~~~~ 90 (225)
T 2yhc_A 83 MRGLTNMA 90 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-07 Score=81.83 Aligned_cols=156 Identities=13% Similarity=0.037 Sum_probs=64.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhc
Q 008633 168 VIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC-LCQR 246 (558)
Q Consensus 168 ~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~-~~~~ 246 (558)
.....+.+.|++++|...|++..+.. +.+...+..+...+...|++++|++.++++.+.. |+...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 34444555555555555555544432 2244455555555555555555555555554332 122222111111 1111
Q ss_pred CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 247 LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSP-DSLTFSFLIEGLGRAGRIDDAIEVF 325 (558)
Q Consensus 247 ~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~ 325 (558)
+....|...|++.....|.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 112223444444333333344444444444444444444444444444332111 1223334444444444444444444
Q ss_pred H
Q 008633 326 D 326 (558)
Q Consensus 326 ~ 326 (558)
+
T Consensus 168 ~ 168 (176)
T 2r5s_A 168 R 168 (176)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=6.7e-08 Score=81.13 Aligned_cols=139 Identities=7% Similarity=-0.104 Sum_probs=76.5
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008633 210 RAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERV 289 (558)
Q Consensus 210 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 289 (558)
..|++++|++.++...... +-+...+-.+...|.+.|++++|.+.|++.....|-+..+|..+..+|.+.|++++|+..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 3455566666555554421 112233445555666666666666666665554455666666666666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008633 290 LKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEV-FDTMKEKGCGPDTNAYNAVISNYISVG 351 (558)
Q Consensus 290 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g 351 (558)
|++..+.. +-+...|..+...+.+.|+.++|.+. +++..+..+. +..+|......+...|
T Consensus 88 ~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 88 YRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 66666542 12355566666666666666554433 3555554332 4555555555555444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.68 E-value=3.4e-06 Score=79.51 Aligned_cols=127 Identities=12% Similarity=0.063 Sum_probs=61.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CHHHHH
Q 008633 273 VISGWSKLGQVVEMERVLKEIVAEGFS-PD----SLTFSFLIEGLGRAGRIDDAIEVFDTMKEK-----GCGP-DTNAYN 341 (558)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~~p-~~~~~~ 341 (558)
+...+...|++++|+..+++..+.... ++ ..+++.+...|...|++++|...++++.+. +..+ ...++.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 444444445555555555555542111 11 123555555555555555555555555421 1111 122455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 008633 342 AVISNYISVGDFDECMKYYKGMSSY----NCEPN-MDTYTRLISGLLKSR-KVADALEVFEEML 399 (558)
Q Consensus 342 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 399 (558)
.+...|.+.|++++|.+.+++..+. +..+. ..+|..+..+|.+.| ++++|.+.+++..
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5566666666666666666555421 11111 345555556666666 3466665555543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-05 Score=76.48 Aligned_cols=244 Identities=11% Similarity=0.052 Sum_probs=132.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-C
Q 008633 276 GWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAG-RIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV-G-D 352 (558)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~ 352 (558)
...+.+..++|+++++++.... +-+...|+.--..+...| .+++++++++.+.....+ +..+|+.-...+.+. + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence 3344444556666666666643 123344555555555555 366666666666665444 555666555555554 4 5
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008633 353 FDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKK 432 (558)
Q Consensus 353 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 432 (558)
+++++++++++.+.. +.|..+|+--...+.+.|.++. .+. ..+.++++.+++
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~--------------~~~-------------~~~~eELe~~~k 192 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGR--------------ISE-------------AQWGSELDWCNE 192 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTC--------------CCH-------------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccc--------------cch-------------hhHHHHHHHHHH
Confidence 666666666666543 4455555544444444333330 000 001144444444
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCC-------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH------------
Q 008633 433 ARKVGCKLSLTAYKLLLRRLSGFGK-------CGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQL------------ 493 (558)
Q Consensus 433 ~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~------------ 493 (558)
+.+.+ .-|...|+.....+.+.++ ++++++.++++.... +-|...|+.+-..+.+.|+.
T Consensus 193 ~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~ 270 (349)
T 3q7a_A 193 MLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYT 270 (349)
T ss_dssp HHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGT
T ss_pred HHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccc
Confidence 44433 2344444444444444443 466666666666543 44666666666666655543
Q ss_pred --------hHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhhhc
Q 008633 494 --------ENAVLVMEESLRKG-----FCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRLWR 552 (558)
Q Consensus 494 --------~~A~~~~~~m~~~g-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 552 (558)
.+...+..++...+ -.++...+..|++.|...|+.++|.++++.+.+ ...|-...||.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~-~~dpir~~yw~ 341 (349)
T 3q7a_A 271 ASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS-EYDQMRAGYWE 341 (349)
T ss_dssp C--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCGGGHHHHH
T ss_pred cccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hhChHHHHHHH
Confidence 22333333332221 135678888899999999999999999999753 56777777774
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.68 E-value=8.1e-07 Score=84.45 Aligned_cols=124 Identities=11% Similarity=-0.045 Sum_probs=55.1
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcC----CCC--ChhhHHHH
Q 008633 205 MDSFIRAGQVYKAIQMLGRLEDF----GLK-FDAESLNVVLWCLCQRLHVGAASSLFNSMKGK----VLF--NVMTYNIV 273 (558)
Q Consensus 205 i~~~~~~g~~~~A~~~~~~~~~~----g~~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~----~~~--~~~~~~~l 273 (558)
...|...|++++|.+.|.+..+. |-. .-..+|+.+..+|.+.|++++|...|++.... ..+ -..+++.+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555556666666666554431 100 01234555555555555555555555543210 001 12344445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 274 ISGWSKLGQVVEMERVLKEIVAE----GFSP-DSLTFSFLIEGLGRAGRIDDAIEVFDTMK 329 (558)
Q Consensus 274 i~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 329 (558)
...|.. |++++|+..|++..+. |-.. ...++..+...+.+.|++++|...|++..
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555544 5555555555544431 1000 02334444444444455555554444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=4.4e-06 Score=78.69 Aligned_cols=163 Identities=9% Similarity=0.005 Sum_probs=113.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHH
Q 008633 378 LISGLLKSRKVADALEVFEEMLDRGI-VPSTG----TITSFLEPLCSYGPPHAAMMMYKKARKVGCK-LS----LTAYKL 447 (558)
Q Consensus 378 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 447 (558)
.+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|+..++++.+.... .+ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45667777888888888887766421 12211 2233455555667888888888888763221 22 346788
Q ss_pred HHHHHHcCCChhHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCCC-HHHHH
Q 008633 448 LLRRLSGFGKCGMLLDLWHEMQE----S-GYPSD-GEIYEYVIAGLCNIGQLENAVLVMEESLRK----GFCPS-RLVYS 516 (558)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~ 516 (558)
+...|...|++++|+..++++.+ . +..+. ..+|..+...|.+.|++++|+.+++++++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888888888888888888773 1 11222 237788888999999999999999988753 22233 67888
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHH
Q 008633 517 KLSNKLLASN-KLESAYNLFRKIKI 540 (558)
Q Consensus 517 ~l~~~~~~~g-~~~~A~~~~~~m~~ 540 (558)
.+..+|.+.| .+++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999 46999998888764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.66 E-value=4.7e-06 Score=78.48 Aligned_cols=126 Identities=10% Similarity=-0.016 Sum_probs=65.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCC----CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH---c-CCCC--CHHHHH
Q 008633 239 VLWCLCQRLHVGAASSLFNSMKGKV----LFN--VMTYNIVISGWSKLGQVVEMERVLKEIVA---E-GFSP--DSLTFS 306 (558)
Q Consensus 239 ll~~~~~~~~~~~A~~~~~~m~~~~----~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~-g~~p--~~~t~~ 306 (558)
+...+...|++++|...+++..... .+. ..+|+.+...|...|++++|...|++..+ . +..+ ...++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 3344444555555555555443210 011 23556666666666666666666665542 1 1111 113555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHhh
Q 008633 307 FLIEGLGRAGRIDDAIEVFDTMKEK----GCGP-DTNAYNAVISNYISVGDFDEC-MKYYKGMS 364 (558)
Q Consensus 307 ~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 364 (558)
.+...|.+.|++++|.+.+++..+. +... -..+|..+..+|.+.|++++| ...+++..
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6666666666666666666655432 1111 144566666677777777666 55555543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.3e-05 Score=73.29 Aligned_cols=230 Identities=9% Similarity=-0.013 Sum_probs=141.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008633 167 NVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAG-QVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQ 245 (558)
Q Consensus 167 ~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 245 (558)
+.+-..+.+.+..++|+++++++.... +-+..+|+.--..+...| .+++++++++.+.....+ +..+|+.-..++.+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 333334444555667888888887764 225556666666666677 488888888888876533 66777777666666
Q ss_pred c-C-CHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 008633 246 R-L-HVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVV--------EMERVLKEIVAEGFSPDSLTFSFLIEGLGRA 315 (558)
Q Consensus 246 ~-~-~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 315 (558)
. + +.++++++++.+....+-|..+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.....+.+.
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTS
T ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 5 6 7778888888887776777777777666665555555 77777777777643 3666677666666666
Q ss_pred CC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHhhhCC-
Q 008633 316 GR-------IDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDF--------------------DECMKYYKGMSSYN- 367 (558)
Q Consensus 316 g~-------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~~- 367 (558)
++ ++++++.+++++...+. |...|+-+-..+.+.|+. .+..++..++...+
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPL 293 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CC
T ss_pred cccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccc
Confidence 55 56777777777766544 667776666666555542 22233333332211
Q ss_pred ----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 368 ----CEPNMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 368 ----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
-.++......++..|...|+.++|.++++.+.+
T Consensus 294 ~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 294 PEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 024455555566666666666666666666543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-06 Score=76.36 Aligned_cols=124 Identities=10% Similarity=-0.087 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008633 272 IVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVG 351 (558)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 351 (558)
.+...+...|++++|...|++.. .|+...+..+...+.+.|++++|.+.+++..+.... +...+..+..+|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcc
Confidence 33444444444444444444331 234444444444444455555555554444443221 3444445555555555
Q ss_pred CHHHHHHHHHHhhhCCCCC----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 352 DFDECMKYYKGMSSYNCEP----------------NMDTYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 352 ~~~~A~~~~~~m~~~~~~p----------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
++++|.+.|++..+.. +. ....+..+..+|...|++++|...|++..+.
T Consensus 86 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555555555544421 11 1144555555555555555555555555543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.4e-06 Score=76.01 Aligned_cols=128 Identities=11% Similarity=-0.104 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLC 244 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~ 244 (558)
.+..+...+...|++++|...|++.. .|+..++..+...+...|++++|++.+++..+.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45566677778888888888887663 5577788888888888888888888888887654 336677888888888
Q ss_pred hcCCHhHHHHHHHHhhcCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008633 245 QRLHVGAASSLFNSMKGKVLFNV----------------MTYNIVISGWSKLGQVVEMERVLKEIVAEG 297 (558)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 297 (558)
..|++++|.+.|++.....+.+. ..+..+..++.+.|++++|...|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 88888888888887765444333 677778888888888888888888877653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.61 E-value=5.2e-06 Score=78.21 Aligned_cols=166 Identities=10% Similarity=0.015 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCC--HH
Q 008633 374 TYTRLISGLLKSRKVADALEVFEEMLDRGIVPST-----GTITSFLEPLCSYGPPHAAMMMYKKARKVGC---KLS--LT 443 (558)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~ 443 (558)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|+..++++.+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444556666677777777777666654321111 1122334445566777777777777664321 111 34
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCCC-H
Q 008633 444 AYKLLLRRLSGFGKCGMLLDLWHEMQES-GYPSD-----GEIYEYVIAGLCNIGQLENAVLVMEESLRK----GFCPS-R 512 (558)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~ 512 (558)
+|+.+...|...|++++|+..+++..+. ...|+ ..+|..+...|...|++++|+..+++.++. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6777777788888888888888776621 00112 147777888888888888888888887643 11111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 008633 513 LVYSKLSNKLLASNKLESA-YNLFRKIK 539 (558)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 539 (558)
.+|..+..+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6778888888888888888 66666654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.59 E-value=0.00012 Score=74.03 Aligned_cols=343 Identities=11% Similarity=0.005 Sum_probs=207.2
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHH----HhCCHHH
Q 008633 144 EAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKF-FDFMCNVLSDMAKE-GVN-PDLETLSIVMDSFI----RAGQVYK 216 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~l~~~m~~~-g~~-~~~~t~~~li~~~~----~~g~~~~ 216 (558)
+.+...|+-++.. .|++..|...+....+.+. .+....+|+..... |.. .+...|...+..+. ..|+.+.
T Consensus 31 e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 31 RSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp HHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred HHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 4444444444432 3688899888888877663 35566777776654 433 36677777776543 3567888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------------cCCHhHHHHHHHHhhcCCC-CChhhHHHHHHHHHhcC-
Q 008633 217 AIQMLGRLEDFGLKFDAESLNVVLWCLCQ-------------RLHVGAASSLFNSMKGKVL-FNVMTYNIVISGWSKLG- 281 (558)
Q Consensus 217 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~-------------~~~~~~A~~~~~~m~~~~~-~~~~~~~~li~~~~~~g- 281 (558)
+.++|+++.......-...|......-.. ...+..|..+++.+....+ .+...|...+..-...+
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 99999998874322111222222211100 1223334444444432111 13445665555433221
Q ss_pred -C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 282 -Q-----VVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDE 355 (558)
Q Consensus 282 -~-----~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 355 (558)
- .+.+..+|+++.... +-+...|...+.-+.+.|+.++|.++++..... +.+...+. .|....+.++
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~ 260 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEA 260 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTH
T ss_pred cCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhH
Confidence 1 345678899988753 445777887888888999999999999999988 33433332 2332222222
Q ss_pred H-HHHHHHhhhCC-----C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChh
Q 008633 356 C-MKYYKGMSSYN-----C---EPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTIT--SFLEPLCSYGPPH 424 (558)
Q Consensus 356 A-~~~~~~m~~~~-----~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~g~~~ 424 (558)
. ..+.+...... . ......|...+..+.+.+..+.|..+|... ... ..+...|. +.+... ..++.+
T Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~-~~~d~~ 337 (493)
T 2uy1_A 261 VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY-ATGSRA 337 (493)
T ss_dssp HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH-HHCCSH
T ss_pred HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH-HCCChH
Confidence 2 11222111000 0 111245666777777788899999999998 321 23444443 223222 234799
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 425 AAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 425 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
.|..+|+...+.. +-+...+...++.....|+.+.|..+|+.+. .....|...+..-...|+.+.+..+++++.
T Consensus 338 ~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 338 TPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999988753 2345556667787888899999999999973 256788888888888899999999999887
Q ss_pred h
Q 008633 505 R 505 (558)
Q Consensus 505 ~ 505 (558)
.
T Consensus 412 ~ 412 (493)
T 2uy1_A 412 D 412 (493)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3e-06 Score=71.80 Aligned_cols=129 Identities=12% Similarity=-0.005 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008633 409 TITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLC 488 (558)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 488 (558)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|+..+++..+.. +.+...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34445555666677777777777666643 3356677777777888888888888888877653 446778888888888
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 489 NIGQLENAVLVMEESLRKGFCPSRLVYS--KLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
..|++++|...++++.+.. +.+...+. .++..+.+.|++++|.+.+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8899999999998888753 22344553 344447788899999988887754
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.52 E-value=3.7e-06 Score=71.27 Aligned_cols=94 Identities=9% Similarity=0.084 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008633 270 YNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYIS 349 (558)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 349 (558)
|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 3333444444444444444444443321 112333444444444444444444444444433211 33344444444444
Q ss_pred cCCHHHHHHHHHHhhh
Q 008633 350 VGDFDECMKYYKGMSS 365 (558)
Q Consensus 350 ~g~~~~A~~~~~~m~~ 365 (558)
.|++++|.+.|++..+
T Consensus 94 ~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 LGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 4444444444444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-06 Score=70.34 Aligned_cols=95 Identities=14% Similarity=0.098 Sum_probs=55.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008633 444 AYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLL 523 (558)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 523 (558)
.+......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..++++++.+ +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 34444555666666666666666655543 3345566666666666666666666666666542 223556666666666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 008633 524 ASNKLESAYNLFRKIKI 540 (558)
Q Consensus 524 ~~g~~~~A~~~~~~m~~ 540 (558)
..|++++|.+.|++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66666666666666553
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-06 Score=76.81 Aligned_cols=154 Identities=11% Similarity=0.042 Sum_probs=71.7
Q ss_pred cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHH
Q 008633 246 RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE----GFSP-DSLTFSFLIEGLGRAGRIDD 320 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~ 320 (558)
.|++++|.++++.+.........++..+...+...|++++|...+++.... |..+ ...++..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 445555555333332221123445555555555556666665555555431 1111 12344455555555556655
Q ss_pred HHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC-CCHHHHHHHHHHHHhcCCHH
Q 008633 321 AIEVFDTMKEK----GCGP--DTNAYNAVISNYISVGDFDECMKYYKGMSSY----NCE-PNMDTYTRLISGLLKSRKVA 389 (558)
Q Consensus 321 a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~ 389 (558)
|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+. +.. .-..++..+...+...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 55555554332 1111 1234555555666666666666666555421 100 01122345555555666666
Q ss_pred HHHHHHHHHH
Q 008633 390 DALEVFEEML 399 (558)
Q Consensus 390 ~A~~~~~~m~ 399 (558)
+|.+.+++..
T Consensus 165 ~A~~~~~~al 174 (203)
T 3gw4_A 165 EAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6665555543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.50 E-value=4.9e-06 Score=66.35 Aligned_cols=25 Identities=32% Similarity=0.701 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHh
Q 008633 339 AYNAVISNYISVGDFDECMKYYKGM 363 (558)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~~~~~m 363 (558)
++..+...|...|++++|.+.|+++
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 79 AWYNLGNAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3333333333344444444444333
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-06 Score=76.97 Aligned_cols=133 Identities=9% Similarity=-0.066 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhc------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC--
Q 008633 233 AESLNVVLWCLCQRLHVGAASSLFNSMKG------KVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE----GFSP-- 300 (558)
Q Consensus 233 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-- 300 (558)
..++..+...+...|++++|...+++... ..+....+++.+...+...|++++|...+++..+. +-.+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 34445555555555555555555554432 11123445666667777777777777777665542 1111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 301 DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK----GCG-PDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 301 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
....+..+...+...|++++|...+++..+. +.. .-..++..+...+...|++++|.+.+++..+
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1344666667777777777777777766532 111 0123456777888888888888888877653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.48 E-value=9.8e-06 Score=75.76 Aligned_cols=193 Identities=11% Similarity=-0.004 Sum_probs=117.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHH
Q 008633 197 DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISG 276 (558)
Q Consensus 197 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~ 276 (558)
+...+..+...+.+.|++++|++.|+++.+.. +.+...+..+..+|.+.|++++|...+++.....+.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45566677777777788888888887777653 22667777778888888888888888888777666677888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 277 WSKLGQVVEMERVLKEIVAEGFSPDS-LTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDE 355 (558)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 355 (558)
+...|++++|...|++..+.. |+. ..+...+....+ ..++. -+..........+......+... ..|+.++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 888888888888888776532 110 001111111111 11111 12222233334444444444332 2578888
Q ss_pred HHHHHHHhhhCCCCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 008633 356 CMKYYKGMSSYNCEPNMD-TYTRLISGLLKS-RKVADALEVFEEMLD 400 (558)
Q Consensus 356 A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~-g~~~~A~~~~~~m~~ 400 (558)
|++.+++..+. .|+.. ....+-..+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88888877765 34433 333333334443 567788888877654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=4.1e-05 Score=72.29 Aligned_cols=245 Identities=11% Similarity=0.054 Sum_probs=128.8
Q ss_pred hcCCH-HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008633 279 KLGQV-VEMERVLKEIVAEGFSPD-SLTFSFLIEGLGRAGR----------IDDAIEVFDTMKEKGCGPDTNAYNAVISN 346 (558)
Q Consensus 279 ~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 346 (558)
+.|.+ ++|+++++.+...+ |+ ...|+.--..+...+. +++++.+++.+...... +..+|+.-..+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 34444 36777777776643 33 3334433222222222 45566666666655443 55566655555
Q ss_pred HHhcC--CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008633 347 YISVG--DFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRK-VADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPP 423 (558)
Q Consensus 347 ~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 423 (558)
+.+.+ .+++++++++.+.+.. +.|..+|+.-...+...|. ++++++.+.++.+.. +-|...|+.....+...+..
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 55555 3566666666666544 4455666655555555555 456666666666543 23444444333333222110
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CC
Q 008633 424 HAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNI-----------GQ 492 (558)
Q Consensus 424 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~ 492 (558)
..+- ..+ . ...+.++++++.++...... +-|...|+.+-..+.+. +.
T Consensus 196 ~~~~-------~~~-~-------------~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~ 253 (331)
T 3dss_A 196 PDSG-------PQG-R-------------LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTV 253 (331)
T ss_dssp C--------------C-------------CCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHH
T ss_pred cccc-------ccc-c-------------cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHH
Confidence 0000 000 0 00033566667776666543 44566666555444444 45
Q ss_pred HhHHHHHHHHHHhCCCCCCH-HHHHHHH---HHHHhcCCHHHHHHHHHHHHHhcCCchhhhhhccc
Q 008633 493 LENAVLVMEESLRKGFCPSR-LVYSKLS---NKLLASNKLESAYNLFRKIKIARQNDYARRLWRSK 554 (558)
Q Consensus 493 ~~~A~~~~~~m~~~g~~p~~-~~~~~l~---~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 554 (558)
++++++.++++.+. .||. -.+..++ .+....|..+++...+.++. .+.|....+|..+
T Consensus 254 l~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 254 LQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK--AVDPMRAAYLDDL 315 (331)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH--HHCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHH--HhCcchhhHHHHH
Confidence 77888888888865 4552 2222222 12224677888888888888 5677777777543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.47 E-value=4.3e-06 Score=69.83 Aligned_cols=99 Identities=8% Similarity=-0.120 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 442 LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNK 521 (558)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 521 (558)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|+++++.. +-+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 3455566666777777777777777777653 4456677777777777777777777777777653 2235667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHhc
Q 008633 522 LLASNKLESAYNLFRKIKIAR 542 (558)
Q Consensus 522 ~~~~g~~~~A~~~~~~m~~~~ 542 (558)
|.+.|++++|.+.|++..+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 777777777777777776544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.8e-06 Score=67.23 Aligned_cols=24 Identities=8% Similarity=0.313 Sum_probs=9.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Q 008633 340 YNAVISNYISVGDFDECMKYYKGM 363 (558)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~~~~~m 363 (558)
|..+..+|...|++++|.+.|++.
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333333333333333333333333
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-06 Score=82.32 Aligned_cols=197 Identities=9% Similarity=-0.011 Sum_probs=134.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 161 KDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 161 ~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
.+...+..+...+.+.|++++|...|++..+.. +.+...|..+...+.+.|++++|++.++++.+.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 356788889999999999999999999998864 3378899999999999999999999999999865 34678899999
Q ss_pred HHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 241 WCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDD 320 (558)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 320 (558)
.+|...|++++|...|++.....|.+...+...+....+ ..++.. +..........+......+ ..+ ..|+.++
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~ 153 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYL-TRL-IAAERER 153 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHHHH
Confidence 999999999999999998754322111111112222111 111111 2223333334444443333 222 3688899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhC
Q 008633 321 AIEVFDTMKEKGCGPDTNAYNAVISNYISV-GDFDECMKYYKGMSSY 366 (558)
Q Consensus 321 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 366 (558)
|.+.++...+... .+......+...+.+. +.+++|.++|.++.+.
T Consensus 154 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhcccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9988888776532 2344444455555555 6788999999988753
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.46 E-value=6e-06 Score=65.83 Aligned_cols=112 Identities=9% Similarity=0.020 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC 242 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 242 (558)
...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455555666666666666666666655542 2344555555555556666666666665555432 2234444555555
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISG 276 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~ 276 (558)
+...|++++|...|+++....|.+...+..+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 5555555555555555443333334444433333
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.7e-06 Score=66.96 Aligned_cols=26 Identities=15% Similarity=0.335 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 008633 339 AYNAVISNYISVGDFDECMKYYKGMS 364 (558)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~~~~~m~ 364 (558)
.+..+..+|.+.|++++|.+.|++..
T Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333444444444444444444333
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.43 E-value=4e-06 Score=67.88 Aligned_cols=120 Identities=5% Similarity=-0.175 Sum_probs=75.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVV 239 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 239 (558)
+.+...|..+...+.+.|++++|...+++..+.. +.+..++..+...+...|++++|++.++++.+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 4456667777777777777777777777776653 2356666777777777777777777777766543 2245566666
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLG 281 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g 281 (558)
..++.+.|++++|.+.|++.....+.+...+..+...+.+.|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 666666666666666666655443434455555555554433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=5.9e-06 Score=66.52 Aligned_cols=94 Identities=12% Similarity=0.089 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008633 270 YNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYIS 349 (558)
Q Consensus 270 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 349 (558)
+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.++...+.... +...+..+..+|..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHHH
Confidence 3333344444444444444444433321 112333333444444444444444444444333211 23344444444444
Q ss_pred cCCHHHHHHHHHHhhh
Q 008633 350 VGDFDECMKYYKGMSS 365 (558)
Q Consensus 350 ~g~~~~A~~~~~~m~~ 365 (558)
.|++++|.+.|++..+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.1e-06 Score=73.99 Aligned_cols=120 Identities=6% Similarity=0.024 Sum_probs=69.6
Q ss_pred hcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH--HHH
Q 008633 245 QRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEG-LGRAGRI--DDA 321 (558)
Q Consensus 245 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~--~~a 321 (558)
..|++++|...++......|.+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34556666666665554445566666666666666666666666666666542 1244455555555 5566665 666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 008633 322 IEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSY 366 (558)
Q Consensus 322 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 366 (558)
...++++.+.... +...+..+..+|...|++++|...|+++.+.
T Consensus 101 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 6666666655332 4555666666666666666666666666654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=8.6e-06 Score=65.50 Aligned_cols=116 Identities=11% Similarity=0.034 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008633 234 ESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLG 313 (558)
Q Consensus 234 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 313 (558)
..+..+...+...|++++|...|++.....+.+...|..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 3444444455555555555555554443333344455555555555555555555555544432 123444444445555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008633 314 RAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVG 351 (558)
Q Consensus 314 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 351 (558)
..|++++|.+.+++..+.... +...+..+..++.+.|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 555555555555554444222 3344444444444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.41 E-value=8.4e-06 Score=74.82 Aligned_cols=187 Identities=5% Similarity=-0.098 Sum_probs=98.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHHhCCHHHHHHHHHHHHhCCCCCC---------------
Q 008633 175 RRKFFDFMCNVLSDMAKEGVNPDLETLSIV-------MDSFIRAGQVYKAIQMLGRLEDFGLKFD--------------- 232 (558)
Q Consensus 175 ~~~~~~~a~~l~~~m~~~g~~~~~~t~~~l-------i~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------- 232 (558)
+.++...|.+.|.+..+.. +-....|..+ ...+.+.++..+++..+....+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5678888888888887763 2245666666 3555555555555544444433 1111
Q ss_pred -------HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HH
Q 008633 233 -------AESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD--SL 303 (558)
Q Consensus 233 -------~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~ 303 (558)
....-.+...+...|++++|.++|+.+....|-+. ....+...+.+.+++++|+..|+...... .|. ..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 12333445556666666666666666654433233 44555556666666666666665332211 110 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 008633 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPD--TNAYNAVISNYISVGDFDECMKYYKGMSSY 366 (558)
Q Consensus 304 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 366 (558)
.+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444455555566666666666665553322132 223344455555566666666666655543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.39 E-value=4e-06 Score=76.98 Aligned_cols=189 Identities=9% Similarity=-0.021 Sum_probs=129.8
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCCHhHHHHHHHHhhcCCC------CC----------
Q 008633 210 RAGQVYKAIQMLGRLEDFGLKFDAESLNVV-------LWCLCQRLHVGAASSLFNSMKGKVL------FN---------- 266 (558)
Q Consensus 210 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-------l~~~~~~~~~~~A~~~~~~m~~~~~------~~---------- 266 (558)
..++...|.+.|.++.+.... ....|+.+ ...+.+.++..++...+..-.+.-+ .+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 579999999999999986533 56677777 4556665556666555554432100 01
Q ss_pred -----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHH
Q 008633 267 -----VMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPD--TNA 339 (558)
Q Consensus 267 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~ 339 (558)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 1234456777888899999999998887643 444355555667888899999998887554432 111 236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008633 340 YNAVISNYISVGDFDECMKYYKGMSSYNCEPN--MDTYTRLISGLLKSRKVADALEVFEEMLDRG 402 (558)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 402 (558)
+..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67788888889999999999988875432243 3356667777888889999999988888753
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2e-06 Score=71.74 Aligned_cols=92 Identities=10% Similarity=-0.019 Sum_probs=42.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008633 412 SFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIG 491 (558)
Q Consensus 412 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 491 (558)
.+...+...|++++|...|+++.+.. +.+...|..+..+|...|++++|+..|++..+.. +.+...|..+..++...|
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g 103 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXG 103 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 33344444455555555555444432 2234444444444445555555555554444432 223344444444445555
Q ss_pred CHhHHHHHHHHHHh
Q 008633 492 QLENAVLVMEESLR 505 (558)
Q Consensus 492 ~~~~A~~~~~~m~~ 505 (558)
++++|...|+++++
T Consensus 104 ~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 104 ELAEAESGLFLAQE 117 (148)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555544443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1e-05 Score=77.85 Aligned_cols=94 Identities=14% Similarity=0.103 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 008633 303 LTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGL 382 (558)
Q Consensus 303 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 382 (558)
..|..+..++.+.|++++|...+++..+.... +...|..+..+|...|++++|...|++..+.. +.+...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 45555556666666666666666666555332 55566666666666666666666666665542 33455556666666
Q ss_pred HhcCCHHHH-HHHHHHH
Q 008633 383 LKSRKVADA-LEVFEEM 398 (558)
Q Consensus 383 ~~~g~~~~A-~~~~~~m 398 (558)
.+.|+.++| ...++.|
T Consensus 275 ~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 666666655 3344444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.1e-06 Score=72.11 Aligned_cols=122 Identities=6% Similarity=0.029 Sum_probs=82.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCCh--
Q 008633 382 LLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRR-LSGFGKC-- 458 (558)
Q Consensus 382 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 458 (558)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345677777877777776653 3455667777777777888888888888777654 3356666667666 6677777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 459 GMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 459 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
++|...+++..+.. +.+...+..+...+...|++++|...++++++.
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888887777653 335667777777778888888888888877765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-06 Score=77.53 Aligned_cols=124 Identities=12% Similarity=-0.003 Sum_probs=64.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 267 VMTYNIVISGWSKLGQVVEMERVLKEIVAEGFS-PD--------------SLTFSFLIEGLGRAGRIDDAIEVFDTMKEK 331 (558)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 331 (558)
...+..+...+.+.|++++|...|++..+.... |+ ...|..+..++.+.|++++|...++...+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344555666666666666666666666553211 10 144555555555556666666666555554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 332 GCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADAL 392 (558)
Q Consensus 332 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 392 (558)
... +...+..+..+|...|++++|.+.|++..+.. +-+...+..+..++...++.+++.
T Consensus 118 ~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 DKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp STT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred Ccc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 322 44555555556666666666666666555432 223444444444444444444433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=3.3e-06 Score=70.42 Aligned_cols=98 Identities=12% Similarity=0.002 Sum_probs=46.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVIS 345 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 345 (558)
+...+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|...|++..+.... +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 34444445555555555555555555544432 123444444444455555555555555554444322 3344444455
Q ss_pred HHHhcCCHHHHHHHHHHhhh
Q 008633 346 NYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 346 ~~~~~g~~~~A~~~~~~m~~ 365 (558)
+|...|++++|.+.|++..+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555554443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-05 Score=77.31 Aligned_cols=124 Identities=9% Similarity=-0.072 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHhHHHHHHHHhhcC
Q 008633 197 DLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD--------------AESLNVVLWCLCQRLHVGAASSLFNSMKGK 262 (558)
Q Consensus 197 ~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 262 (558)
+...+..+...+.+.|++++|++.|++..+...... ..+|..+..+|.+.|++++|+..|++....
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666777777777888888888777776432211 244444444555555555555555444443
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 263 VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDA 321 (558)
Q Consensus 263 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 321 (558)
.|.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|+.++|
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555554444432 11233444444444444444444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.31 E-value=7e-06 Score=68.51 Aligned_cols=98 Identities=7% Similarity=0.021 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 008633 198 LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGW 277 (558)
Q Consensus 198 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~ 277 (558)
...+..+...+.+.|++++|++.|+++.+.. +.+...|..+..+|...|++++|...|++.....|.+...|..+..+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3455566666667777777777777766653 225666666667777777777777777766655555666777777777
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 008633 278 SKLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~ 296 (558)
.+.|++++|...|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777664
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=5.1e-05 Score=59.54 Aligned_cols=108 Identities=11% Similarity=-0.114 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC 242 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 242 (558)
...|..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445555666666666666666666665542 2245555556666666666666666666655542 2244555555555
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNI 272 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 272 (558)
+...|++++|.+.+++.....|.+...+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 111 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEG 111 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 555555555555555555444434444333
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=4.6e-05 Score=59.82 Aligned_cols=92 Identities=11% Similarity=0.050 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 271 NIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV 350 (558)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 350 (558)
..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+.... +...+..+..++...
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHH
Confidence 333333444444444444444433321 112333333333444444444444444444333211 333344444444444
Q ss_pred CCHHHHHHHHHHhh
Q 008633 351 GDFDECMKYYKGMS 364 (558)
Q Consensus 351 g~~~~A~~~~~~m~ 364 (558)
|++++|.+.+++..
T Consensus 86 ~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 86 NRFEEAKRTYEEGL 99 (118)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 44444444444444
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.1e-05 Score=66.60 Aligned_cols=98 Identities=9% Similarity=0.045 Sum_probs=56.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVIS 345 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 345 (558)
+...+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|...|+...+.... +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 34445555556666666666666666665543 224455555556666666666666666666555433 4445555666
Q ss_pred HHHhcCCHHHHHHHHHHhhh
Q 008633 346 NYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 346 ~~~~~g~~~~A~~~~~~m~~ 365 (558)
+|...|++++|.+.|++..+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.21 E-value=2e-05 Score=65.00 Aligned_cols=91 Identities=9% Similarity=-0.062 Sum_probs=45.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008633 413 FLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQ 492 (558)
Q Consensus 413 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 492 (558)
+...+...|++++|...|+++.+.+ +.+...|..+..++...|++++|+..|++..+.. +.+...|..+..++...|+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3344445555555555555555433 2344445555555555555555555555555432 2234445555555555555
Q ss_pred HhHHHHHHHHHHh
Q 008633 493 LENAVLVMEESLR 505 (558)
Q Consensus 493 ~~~A~~~~~~m~~ 505 (558)
+++|...|+++++
T Consensus 102 ~~~A~~~~~~al~ 114 (142)
T 2xcb_A 102 LDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0015 Score=61.71 Aligned_cols=148 Identities=11% Similarity=0.001 Sum_probs=89.6
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CH
Q 008633 251 AASSLFNSMKGKVLFNVMTYNIVISGWSKLGQ----------VVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAG--RI 318 (558)
Q Consensus 251 ~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~ 318 (558)
+|+++++.+....|-+..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-...+.+.+ .+
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccH
Confidence 56666666665555555555554333333332 566777777776653 235566666655566666 36
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc------------
Q 008633 319 DDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGD-FDECMKYYKGMSSYNCEPNMDTYTRLISGLLKS------------ 385 (558)
Q Consensus 319 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~------------ 385 (558)
++++++++.+.+.... |..+|+.-..++...|. ++++++.++++.+.. +-|...|+.....+...
T Consensus 127 ~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~ 204 (331)
T 3dss_A 127 ARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRL 204 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcccccccccc
Confidence 7777777777776544 66677766666666676 477777777777654 45666666655555443
Q ss_pred --CCHHHHHHHHHHHHHC
Q 008633 386 --RKVADALEVFEEMLDR 401 (558)
Q Consensus 386 --g~~~~A~~~~~~m~~~ 401 (558)
+.++++++.+.+....
T Consensus 205 ~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 205 PENVLLKELELVQNAFFT 222 (331)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHh
Confidence 3355666666665554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=4.4e-05 Score=61.28 Aligned_cols=94 Identities=13% Similarity=0.158 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 008633 305 FSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLK 384 (558)
Q Consensus 305 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 384 (558)
+..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 333344444444444444444444443222 34444445555555555555555555544432 2234444445555555
Q ss_pred cCCHHHHHHHHHHHHH
Q 008633 385 SRKVADALEVFEEMLD 400 (558)
Q Consensus 385 ~g~~~~A~~~~~~m~~ 400 (558)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555554443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.2e-05 Score=62.12 Aligned_cols=16 Identities=6% Similarity=0.158 Sum_probs=5.9
Q ss_pred HHHhCCHHHHHHHHHH
Q 008633 208 FIRAGQVYKAIQMLGR 223 (558)
Q Consensus 208 ~~~~g~~~~A~~~~~~ 223 (558)
+.+.|++++|++.|++
T Consensus 14 ~~~~~~~~~A~~~~~~ 29 (126)
T 3upv_A 14 YFTKSDWPNAVKAYTE 29 (126)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHH
Confidence 3333333333333333
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.9e-05 Score=63.67 Aligned_cols=95 Identities=17% Similarity=0.084 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC--CCCC----HHHHHHH
Q 008633 445 YKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKG--FCPS----RLVYSKL 518 (558)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~l 518 (558)
+..+...+.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|+..++++++.. ..++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3444455555555555555555555432 2344455555555555555555555555554321 0111 1345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 008633 519 SNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
..++...|++++|.+.+++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555566666555555544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=3.3e-05 Score=67.82 Aligned_cols=95 Identities=8% Similarity=-0.068 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008633 268 MTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNY 347 (558)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 347 (558)
..|..+..++.+.|++++|+..+++..+.. +.+...+..+..++...|++++|.+.|++..+.... +...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 556666666666777777777776666542 234556666666677777777777777766665332 455666666666
Q ss_pred HhcCCHHHHH-HHHHHhh
Q 008633 348 ISVGDFDECM-KYYKGMS 364 (558)
Q Consensus 348 ~~~g~~~~A~-~~~~~m~ 364 (558)
...++.+++. ..|..|.
T Consensus 167 ~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 6665555554 3444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.17 E-value=4.5e-05 Score=62.07 Aligned_cols=97 Identities=9% Similarity=-0.048 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008633 407 TGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAG 486 (558)
Q Consensus 407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 486 (558)
...+..+...+...|++++|...++.+.+.. +.+...|..+..++...|++++|...+++..+.. +.+...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 3444444445555555555555555554432 2234444555555555555555555555544432 2234444555555
Q ss_pred HHhcCCHhHHHHHHHHHHh
Q 008633 487 LCNIGQLENAVLVMEESLR 505 (558)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~ 505 (558)
+...|++++|+..++++++
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.7e-05 Score=61.79 Aligned_cols=98 Identities=16% Similarity=0.094 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 008633 443 TAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCP--SRLVYSKLSN 520 (558)
Q Consensus 443 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~ 520 (558)
..+..+...+...|++++|...+++..+.. +.+...|..+...+...|++++|...++++++.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 345556666777777777777777776643 3456677777777788888888888888877653 22 4677777778
Q ss_pred HHHhc-CCHHHHHHHHHHHHHhc
Q 008633 521 KLLAS-NKLESAYNLFRKIKIAR 542 (558)
Q Consensus 521 ~~~~~-g~~~~A~~~~~~m~~~~ 542 (558)
++.+. |++++|.+.+++.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 88888 88888888887776543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.3e-05 Score=65.43 Aligned_cols=98 Identities=9% Similarity=0.012 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008633 407 TGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAG 486 (558)
Q Consensus 407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 486 (558)
...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|+..+++..+.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4566777778888899999999999888764 4467888888888889999999999998888764 4467788888888
Q ss_pred HHhcCCHhHHHHHHHHHHhC
Q 008633 487 LCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~~ 506 (558)
+...|++++|+..|+++++.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 88999999999999888865
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00013 Score=72.59 Aligned_cols=160 Identities=9% Similarity=0.011 Sum_probs=73.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCH
Q 008633 310 EGLGRAGRIDDAIEVFDTMKEKGCGPD----------------TNAYNAVISNYISVGDFDECMKYYKGMSSYN-CEPNM 372 (558)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~ 372 (558)
..+.+.|++++|.+.|..+.+...... ...+..+...|.+.|++++|.+++..+.+.- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445566777777777776665532211 0134455666666666666666666554310 01111
Q ss_pred H----HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CC---
Q 008633 373 D----TYTRLISGLLKSRKVADALEVFEEMLD----RGIVPS-TGTITSFLEPLCSYGPPHAAMMMYKKARKV--GC--- 438 (558)
Q Consensus 373 ~----~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~--- 438 (558)
. +.+.+-..+...|++++|..++++... .+..+. ..++..+...+...|++++|..+++.+... +.
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 111112222234555555555555432 111121 233444455555555555555555544331 10
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 008633 439 KLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQ 469 (558)
Q Consensus 439 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 469 (558)
.....+|..++..|...|++++|..++++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 0112344444555555555555555554443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00018 Score=71.65 Aligned_cols=196 Identities=7% Similarity=0.008 Sum_probs=136.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC-CC
Q 008633 170 VKALGRRKFFDFMCNVLSDMAKEGVNPD----------------LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLK-FD 232 (558)
Q Consensus 170 i~~~~~~~~~~~a~~l~~~m~~~g~~~~----------------~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~-~~ 232 (558)
.+.+.+.|++++|.+.|....+...... ...+..+...|...|++++|.+.+..+.+.--. .+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456788999999999999987532111 134778889999999999999999887642111 12
Q ss_pred H----HHHHHHHHHHHhcCCHhHHHHHHHHhhc-----C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC--
Q 008633 233 A----ESLNVVLWCLCQRLHVGAASSLFNSMKG-----K-VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE--GF-- 298 (558)
Q Consensus 233 ~----~~~~~ll~~~~~~~~~~~A~~~~~~m~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-- 298 (558)
. .+.+.+-..+...|+.+.|..+++.... . ...-..++..+...|...|++++|..++.+.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 2233333444556888999888876632 1 2223457788899999999999999999887653 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 299 SP-DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK----GCGPD--TNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 299 ~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
.+ ...++..++..|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2456888888999999999999998877543 11111 24566677778888899998888777653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.11 E-value=5.7e-05 Score=61.45 Aligned_cols=97 Identities=10% Similarity=-0.087 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 008633 198 LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGW 277 (558)
Q Consensus 198 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~ 277 (558)
...+..+...+...|++++|+..|....+.. +.+...+..+..++...|++++|...+++.....+.+...|..+..++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3444444444444455555554444444332 113344444444444444444444444444333333444555555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 008633 278 SKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~ 295 (558)
...|++++|...|++..+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555554443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00013 Score=60.00 Aligned_cols=98 Identities=13% Similarity=0.011 Sum_probs=58.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD----SLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYN 341 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 341 (558)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|...+++..+.... +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 4556666666666667777777766666654 244 345555556666666666666666666554322 455555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC
Q 008633 342 AVISNYISVGDFDECMKYYKGMSSY 366 (558)
Q Consensus 342 ~li~~~~~~g~~~~A~~~~~~m~~~ 366 (558)
.+..+|...|++++|.+.|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5666666666666666666665543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.08 E-value=7.1e-05 Score=63.31 Aligned_cols=96 Identities=7% Similarity=0.006 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008633 267 VMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISN 346 (558)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 346 (558)
...|..+...+.+.|++++|+..|++..+.. +-+...|..+..++.+.|++++|...+++..+.... +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3344445555555555555555555554432 113344444444444445555554444444444322 34444444444
Q ss_pred HHhcCCHHHHHHHHHHhh
Q 008633 347 YISVGDFDECMKYYKGMS 364 (558)
Q Consensus 347 ~~~~g~~~~A~~~~~~m~ 364 (558)
|...|++++|.+.|++..
T Consensus 89 ~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 444444444444444444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=3.5e-05 Score=61.55 Aligned_cols=93 Identities=8% Similarity=-0.032 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 008633 446 KLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLAS 525 (558)
Q Consensus 446 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 525 (558)
..+...+.+.|++++|+..+++..+.. +.+...|..+..++...|++++|+..++++++.. +-+...+..+..+|...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 344555677788888888887777653 4466677777778888888888888888877653 22466777788888888
Q ss_pred CCHHHHHHHHHHHHH
Q 008633 526 NKLESAYNLFRKIKI 540 (558)
Q Consensus 526 g~~~~A~~~~~~m~~ 540 (558)
|++++|.+.+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888877763
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.08 E-value=6.6e-05 Score=60.48 Aligned_cols=23 Identities=4% Similarity=0.163 Sum_probs=9.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Q 008633 342 AVISNYISVGDFDECMKYYKGMS 364 (558)
Q Consensus 342 ~li~~~~~~g~~~~A~~~~~~m~ 364 (558)
.+..++...|++++|++.|++..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33344444444444444444433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00012 Score=60.31 Aligned_cols=113 Identities=9% Similarity=-0.122 Sum_probs=78.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHH
Q 008633 160 AKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD----LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAES 235 (558)
Q Consensus 160 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~----~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 235 (558)
+.+...+..+...+...|++++|...|++..+. .|+ ...+..+...+...|++++|++.+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 356777888888888888888888888888775 345 5677777777788888888888887777653 225566
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHH
Q 008633 236 LNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVIS 275 (558)
Q Consensus 236 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~ 275 (558)
+..+..++...|++++|...|++.....+.+...+..+..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 6667777777777777777777665544444444444333
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.07 E-value=4e-05 Score=61.52 Aligned_cols=24 Identities=4% Similarity=-0.011 Sum_probs=9.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKE 292 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~ 292 (558)
.+..+...+...|++++|...+++
T Consensus 40 ~~~~la~~~~~~~~~~~A~~~~~~ 63 (131)
T 1elr_A 40 YITNQAAVYFEKGDYNKCRELCEK 63 (131)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHH
Confidence 333333333333333333333333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.6e-05 Score=59.84 Aligned_cols=100 Identities=11% Similarity=0.027 Sum_probs=57.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCG-PDTNAYNAVI 344 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li 344 (558)
+...|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.... .+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34455555566666666666666666655542 224455555566666666666666666666554211 0355556666
Q ss_pred HHHHhc-CCHHHHHHHHHHhhhC
Q 008633 345 SNYISV-GDFDECMKYYKGMSSY 366 (558)
Q Consensus 345 ~~~~~~-g~~~~A~~~~~~m~~~ 366 (558)
.++.+. |++++|.+.+++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666666554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.05 E-value=3.9e-05 Score=61.59 Aligned_cols=96 Identities=7% Similarity=0.006 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCC-------hhhHHH
Q 008633 200 TLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFN-------VMTYNI 272 (558)
Q Consensus 200 t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~-------~~~~~~ 272 (558)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++.....+.+ ..+|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444444555555555555555544432 2234445555555555555555555555443221111 455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 008633 273 VISGWSKLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~~ 296 (558)
+...+.+.|++++|.+.|++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 666677777777777777766664
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.98 E-value=6.3e-05 Score=62.88 Aligned_cols=131 Identities=11% Similarity=0.077 Sum_probs=59.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAEGFS-PD----SLTFSFLIEGLGRAGRIDDAIEVFDTMKEKG----CGP-DTN 338 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g----~~p-~~~ 338 (558)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++..+.. ..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555555555555555554432100 01 1234444555555555555555555543321 000 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 339 AYNAVISNYISVGDFDECMKYYKGMSSY----NCE-PNMDTYTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
++..+...+...|++++|.+.+++..+. +.. ....++..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4445555555666666666655554421 100 012334445555555555555555555443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.94 E-value=5.7e-05 Score=63.14 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Q 008633 340 YNAVISNYISVGDFDECMKYYKGM 363 (558)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~~~~~m 363 (558)
+..+...|...|++++|.+.+++.
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Confidence 344444444555555555554443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=7.1e-05 Score=59.70 Aligned_cols=27 Identities=4% Similarity=-0.056 Sum_probs=10.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 267 VMTYNIVISGWSKLGQVVEMERVLKEI 293 (558)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~m 293 (558)
...+..+..++.+.|++++|...+++.
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 85 IAVHAALAVSHTNEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333333333
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00023 Score=71.52 Aligned_cols=125 Identities=10% Similarity=-0.008 Sum_probs=75.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 266 NVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD--------------SLTFSFLIEGLGRAGRIDDAIEVFDTMKEK 331 (558)
Q Consensus 266 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 331 (558)
....|..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|...+++..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 344566677777777777777777777665321111 355666666666667777777666666665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 332 GCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADAL 392 (558)
Q Consensus 332 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 392 (558)
... +...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.++|.
T Consensus 347 ~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 DSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred CCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 433 55666666666667777777777776666542 234445566666666666665554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00062 Score=54.42 Aligned_cols=11 Identities=27% Similarity=0.256 Sum_probs=3.9
Q ss_pred CCHHHHHHHHH
Q 008633 212 GQVYKAIQMLG 222 (558)
Q Consensus 212 g~~~~A~~~~~ 222 (558)
|++++|.+.|+
T Consensus 16 ~~~~~A~~~~~ 26 (129)
T 2xev_A 16 GKYDDASQLFL 26 (129)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 33333333333
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.86 E-value=4.1e-05 Score=77.39 Aligned_cols=117 Identities=13% Similarity=-0.018 Sum_probs=73.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 008633 417 LCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENA 496 (558)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 496 (558)
+...|++++|.+.++++.+.. +.+...|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 445667777777777666643 3346677777777777777777777777777653 33566777777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 008633 497 VLVMEESLRKGFCPSRLVYSKLSNK--LLASNKLESAYNLFR 536 (558)
Q Consensus 497 ~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 536 (558)
.+.++++++.. +-+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777652 1123344444444 667777777777766
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00024 Score=71.36 Aligned_cols=124 Identities=7% Similarity=-0.120 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPD--------------LETLSIVMDSFIRAGQVYKAIQMLGRLEDFG 228 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~--------------~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g 228 (558)
...|..+...+.+.|++++|+..|++..+...... ...|..+..+|.+.|++++|+..++++.+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34566666666677777777777776665321111 3445555555555555555555555555432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 008633 229 LKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEME 287 (558)
Q Consensus 229 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 287 (558)
+.+...|..+..+|...|++++|...|++.....|.+...+..+..++.+.++.+++.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1234445555555555555555555555554444444444555555555544444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00021 Score=69.53 Aligned_cols=140 Identities=10% Similarity=0.055 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 008633 372 MDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRR 451 (558)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 451 (558)
...|..+...+.+.|++++|+..|++..+.- +.. ......+.+. +. .+.+..+|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~-------~~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGA-------KL-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHG-------GG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHH-------HH-HHHHHHHHHHHHHH
Confidence 4456777777888888888888887766520 000 0000001110 00 12235678888888
Q ss_pred HHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 452 LSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESA 531 (558)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 531 (558)
|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|+..|+++++.. +-+...+..+..++.+.++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998764 4467788999999999999999999999998763 23567777788888777777766
Q ss_pred HH
Q 008633 532 YN 533 (558)
Q Consensus 532 ~~ 533 (558)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00051 Score=54.95 Aligned_cols=56 Identities=9% Similarity=-0.008 Sum_probs=24.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 008633 170 VKALGRRKFFDFMCNVLSDMAKEGVNPDL---ETLSIVMDSFIRAGQVYKAIQMLGRLED 226 (558)
Q Consensus 170 i~~~~~~~~~~~a~~l~~~m~~~g~~~~~---~t~~~li~~~~~~g~~~~A~~~~~~~~~ 226 (558)
...+.+.|++++|...|+...+... .+. ..+..+..++.+.|++++|++.++++.+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444445555555555555444321 111 2344444444444444444444444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.79 E-value=4.3e-05 Score=60.51 Aligned_cols=85 Identities=14% Similarity=-0.048 Sum_probs=43.4
Q ss_pred hCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 008633 211 AGQVYKAIQMLGRLEDFG--LKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMER 288 (558)
Q Consensus 211 ~g~~~~A~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 288 (558)
.|++++|+..|++..+.+ -+.+..++..+..+|...|++++|...|++.....|.+...+..+..++.+.|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 345555555555555432 112334455555555555555555555555544444455555555555666666666666
Q ss_pred HHHHHHH
Q 008633 289 VLKEIVA 295 (558)
Q Consensus 289 ~~~~m~~ 295 (558)
.+++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.78 E-value=5.5e-05 Score=76.42 Aligned_cols=118 Identities=8% Similarity=-0.048 Sum_probs=78.6
Q ss_pred HHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 242 CLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDA 321 (558)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 321 (558)
.+.+.|++++|.+.|++.....+.+..+|..+..+|.+.|++++|++.+++..+.. +-+...+..+..+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 44566777777777777665555567777778888888888888888887777753 23566777777777888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 008633 322 IEVFDTMKEKGCGPDTNAYNAVISN--YISVGDFDECMKYYK 361 (558)
Q Consensus 322 ~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 361 (558)
.+.+++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888877766432 33344444444 777788888888887
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.78 E-value=4.4e-05 Score=60.42 Aligned_cols=86 Identities=19% Similarity=0.182 Sum_probs=51.5
Q ss_pred cCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 008633 420 YGPPHAAMMMYKKARKVG--CKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAV 497 (558)
Q Consensus 420 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 497 (558)
.|++++|+..|+++.+.+ -+.+...+..+..+|...|++++|+..+++..+.. +-+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 455666666666666543 12234556666666667777777777777666543 334556666666777777777777
Q ss_pred HHHHHHHhC
Q 008633 498 LVMEESLRK 506 (558)
Q Consensus 498 ~~~~~m~~~ 506 (558)
..+++.++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00026 Score=68.84 Aligned_cols=138 Identities=9% Similarity=-0.025 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 008633 198 LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGW 277 (558)
Q Consensus 198 ~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~ 277 (558)
...+..+...+.+.|++++|++.|++..+.- +.. ..... .+......+.+..+|..+..+|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~-------~~~~~~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAE-------DADGAKLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSC-------HHHHGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccC-------hHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777777777777666410 000 00000 0000001111334455555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008633 278 SKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDEC 356 (558)
Q Consensus 278 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 356 (558)
.+.|++++|+..+++..+.. +-+...|..+..+|...|++++|.+.|++..+.... +...+..+..++.+.++.+++
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555432 123444444555555555555555555555444222 334444444444444444333
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.002 Score=66.25 Aligned_cols=171 Identities=11% Similarity=-0.022 Sum_probs=122.0
Q ss_pred HhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--
Q 008633 249 VGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQ----------VVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAG-- 316 (558)
Q Consensus 249 ~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-- 316 (558)
-++|++.++.+....|-+..+|+.--..+.+.|+ ++++++.++++.+.. +-+..+|+.-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 3566777777766666677777776666666666 788888888888764 336677777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc----------
Q 008633 317 RIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVG-DFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKS---------- 385 (558)
Q Consensus 317 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---------- 385 (558)
+++++.+.++++.+.... +..+|+.-..++.+.| .++++++.++++.+.. +-|...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccc
Confidence 668888888888887655 7778888777777888 7888888888888765 45677777776666653
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 008633 386 ----RKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPP 423 (558)
Q Consensus 386 ----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 423 (558)
+.++++++.+.+..... +-+...|..+-..+.+.++.
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 45788888888887753 33455666555555555553
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00038 Score=58.53 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 337 TNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3456666666777777777777777666543 345566666677777777777777777766654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00048 Score=57.90 Aligned_cols=97 Identities=10% Similarity=-0.064 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcC
Q 008633 200 TLSIVMDSFIRAGQVYKAIQMLGRLEDF--------G---------LKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGK 262 (558)
Q Consensus 200 t~~~li~~~~~~g~~~~A~~~~~~~~~~--------g---------~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~ 262 (558)
.+......+.+.|++++|++.|.+..+. . -+.+..+|..+..+|.+.|++++|+..+++....
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444445555555555555555554432 0 0112344555555566666666666666555544
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008633 263 VLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 263 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (558)
.|.+...|..+..++...|++++|...|++..+.
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4445556666666666666666666666665554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0012 Score=67.88 Aligned_cols=172 Identities=7% Similarity=-0.064 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC--C
Q 008633 215 YKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLH----------VGAASSLFNSMKGKVLFNVMTYNIVISGWSKLG--Q 282 (558)
Q Consensus 215 ~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~----------~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g--~ 282 (558)
++|++.++++...... +..+|+.--.++...|+ ++++++.++.+....|-+..+|+.-.-.+.+.| +
T Consensus 46 eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 3445555555443322 33344444334433333 566666666665555556666666666666666 5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------
Q 008633 283 VVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAG-RIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV----------- 350 (558)
Q Consensus 283 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------- 350 (558)
++++++.++++.+.. +-+...|+.-...+.+.| .++++.+.++++++..+. |..+|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccccc
Confidence 577777777777654 235666666666666666 677777777777666544 666776666665552
Q ss_pred ---CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 351 ---GDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVAD 390 (558)
Q Consensus 351 ---g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 390 (558)
+.++++++.+++..... +-|...|.-+-..+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45788888888887654 4567778777777766666443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00041 Score=69.73 Aligned_cols=126 Identities=11% Similarity=0.004 Sum_probs=86.3
Q ss_pred HHhcCChhHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHHcCCChhHHHHHHHHHHH-----CC-CCCC-HHHHHH
Q 008633 417 LCSYGPPHAAMMMYKKARKV---GCKL----SLTAYKLLLRRLSGFGKCGMLLDLWHEMQE-----SG-YPSD-GEIYEY 482 (558)
Q Consensus 417 ~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~-~~~~~~ 482 (558)
+...|++++|+.++++..+. -+.+ ...+++.|...|...|++++|+.++++..+ .| -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34567777777777665542 1111 245677777788888888888777776652 22 1222 347888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 008633 483 VIAGLCNIGQLENAVLVMEESLRK---GFCPS----RLVYSKLSNKLLASNKLESAYNLFRKIKIAR 542 (558)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 542 (558)
|...|...|++++|..+++++++- -+-|+ ..+...+..++...|++++|+.++.++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999888642 11233 4556677778888999999999999987643
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00023 Score=68.32 Aligned_cols=61 Identities=13% Similarity=0.093 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 304 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
.|..+..++.+.|++++|...+++..+.... +...|..+..+|...|++++|.+.|++..+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444445555555555555555555444322 444555555555555555555555555543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00077 Score=55.75 Aligned_cols=96 Identities=14% Similarity=-0.045 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHhcCCHhHHHHHHHHhhcC------
Q 008633 200 TLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKF------D-----AESLNVVLWCLCQRLHVGAASSLFNSMKGK------ 262 (558)
Q Consensus 200 t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~------~-----~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~------ 262 (558)
.+......+.+.|++++|++.|++..+..... + ...|+.+..++.+.|++++|+..+++....
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34445555666677777777776666532210 1 114444444444444444444444443332
Q ss_pred -CCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 263 -VLFNVMTY----NIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 263 -~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
.|.+...| .....++...|++++|+..|++..+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33344444 5555555555555555555555443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00089 Score=54.62 Aligned_cols=110 Identities=13% Similarity=0.062 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 008633 282 QVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYIS----VGDFDECM 357 (558)
Q Consensus 282 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 357 (558)
++++|.++|++..+.| .++.. +...|...+.+++|.+.|++..+.| +...+..|..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4555566666555554 22222 3344444455555666666555553 44455555555555 55566666
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 008633 358 KYYKGMSSYNCEPNMDTYTRLISGLLK----SRKVADALEVFEEMLDRG 402 (558)
Q Consensus 358 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 402 (558)
++|++..+.| +...+..|...|.. .+++++|...|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666655543 34445555555555 555555555555555544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0011 Score=54.89 Aligned_cols=93 Identities=15% Similarity=0.115 Sum_probs=51.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CCCC-
Q 008633 308 LIEGLGRAGRIDDAIEVFDTMKEKGCGP------D-----TNAYNAVISNYISVGDFDECMKYYKGMSSY-----NCEP- 370 (558)
Q Consensus 308 ll~~~~~~g~~~~a~~~~~~m~~~g~~p------~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p- 370 (558)
....+.+.|++++|...|++.++..... + ...|..+..++.+.|++++|+..+++.++. .+.|
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 3344444555555555555544432210 1 226666666666667766666666666553 0123
Q ss_pred CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 371 NMDTY----TRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 371 ~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
+...| .....++...|++++|+..|++..+
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33455 6666667777777777777766653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00024 Score=68.19 Aligned_cols=148 Identities=11% Similarity=-0.048 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 163 VKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWC 242 (558)
Q Consensus 163 ~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 242 (558)
...|..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 455777778888889999999999887764 233321 111222233322211 1366777778
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HHhcCCHHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD-SLTFSFLIEG-LGRAGRIDD 320 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~-~~~~g~~~~ 320 (558)
|.+.|++++|+..+++.....+.+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888776655667778888888888888888888888877654 233 3334444333 233456667
Q ss_pred HHHHHHHHHHC
Q 008633 321 AIEVFDTMKEK 331 (558)
Q Consensus 321 a~~~~~~m~~~ 331 (558)
+.+.|..|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77777777655
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00046 Score=69.34 Aligned_cols=124 Identities=11% Similarity=-0.020 Sum_probs=63.8
Q ss_pred HHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-C-CHHHHHH
Q 008633 277 WSKLGQVVEMERVLKEIVAE-----G-FSPD-SLTFSFLIEGLGRAGRIDDAIEVFDTMKEK-----GCG-P-DTNAYNA 342 (558)
Q Consensus 277 ~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~~-p-~~~~~~~ 342 (558)
+...|++++|+.++++..+. | -.|+ ..+++.|...|...|++++|..++++..+. |.. | ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566666666666665542 1 0121 245666666666666666666666655432 211 1 1335566
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh-----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 343 VISNYISVGDFDECMKYYKGMSS-----YNC-EPN-MDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 343 li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
|...|...|++++|+.++++..+ .|- .|+ ..+.+.+-.++...+.+++|+.++..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665442 120 111 22334444455555556666666555543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.52 E-value=6.7e-05 Score=58.35 Aligned_cols=92 Identities=13% Similarity=0.104 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-------HHH
Q 008633 442 LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-------RLV 514 (558)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~~ 514 (558)
...+..+...+...|++++|++.|++..+.. +.+...|..+..++...|++++|+..++++++. .|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence 4566677777888888888888888887653 446778888888888889999999888888865 344 455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 008633 515 YSKLSNKLLASNKLESAYNLFR 536 (558)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~ 536 (558)
+..+..++...|+.++|.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 6666666666666555544443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.003 Score=51.42 Aligned_cols=89 Identities=8% Similarity=-0.006 Sum_probs=46.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008633 273 VISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGR----AGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYI 348 (558)
Q Consensus 273 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 348 (558)
|...|...+.+++|.++|++..+.| +...+..+-..|.. .++.++|.++|++..+.| +...+..|..+|.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 4444444444555555555555443 34444444444444 455555555555555553 3445555555555
Q ss_pred h----cCCHHHHHHHHHHhhhCC
Q 008633 349 S----VGDFDECMKYYKGMSSYN 367 (558)
Q Consensus 349 ~----~g~~~~A~~~~~~m~~~~ 367 (558)
. .++.++|.++|++..+.|
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC
Confidence 5 556666666666665544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00087 Score=52.47 Aligned_cols=80 Identities=13% Similarity=0.045 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 008633 425 AAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESL 504 (558)
Q Consensus 425 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (558)
.|+..++++.+.. +.+...+..+...|...|++++|+..+++..+.. +.+...|..+..++...|++++|...|++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666643 3456677777777777777777777777777643 3355667777777777777777777777766
Q ss_pred hC
Q 008633 505 RK 506 (558)
Q Consensus 505 ~~ 506 (558)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00033 Score=54.28 Aligned_cols=96 Identities=9% Similarity=0.009 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC------HHH
Q 008633 162 DVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFD------AES 235 (558)
Q Consensus 162 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~------~~~ 235 (558)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|++.+++..+.... + ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST-AEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS-TTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ccHHHHHHHH
Confidence 45667778888888888888888888887763 346778888888888888888888888888875322 2 445
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHh
Q 008633 236 LNVVLWCLCQRLHVGAASSLFNSM 259 (558)
Q Consensus 236 ~~~ll~~~~~~~~~~~A~~~~~~m 259 (558)
+..+..++...|+.+.|...++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHh
Confidence 555566666666666555544443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0015 Score=51.12 Aligned_cols=78 Identities=12% Similarity=0.066 Sum_probs=38.4
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 252 ASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKE 330 (558)
Q Consensus 252 A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 330 (558)
|.+.|++.....|.+...|..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444445555555555555555555555555555432 12334444455555555555555555554443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0027 Score=46.81 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 442 LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNK 521 (558)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 521 (558)
...+..+...+...|++++|+..+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3455556666677777777777777766543 3355667777777777777777777777777653 2235566666665
Q ss_pred HHhc
Q 008633 522 LLAS 525 (558)
Q Consensus 522 ~~~~ 525 (558)
+.+.
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00034 Score=57.76 Aligned_cols=86 Identities=8% Similarity=-0.016 Sum_probs=47.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh----------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008633 419 SYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKC----------GMLLDLWHEMQESGYPSDGEIYEYVIAGLC 488 (558)
Q Consensus 419 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 488 (558)
+.+.+++|.+.++...+.. +.+...|..+..++...+++ ++|+..|++..+.. +-+...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 3445566666666665544 33555555555555555543 35666666655543 224445666666665
Q ss_pred hcC-----------CHhHHHHHHHHHHhC
Q 008633 489 NIG-----------QLENAVLVMEESLRK 506 (558)
Q Consensus 489 ~~g-----------~~~~A~~~~~~m~~~ 506 (558)
..| ++++|+..|+++++.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 543 566666666666543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0027 Score=46.80 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLE 225 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 225 (558)
.|..+...+...|++++|...+++..+.. +.+..++..+...+.+.|++++|++.+++..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33334444444444444444444443321 1123333333344444444444444444333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0029 Score=48.01 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008633 441 SLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLR 505 (558)
Q Consensus 441 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (558)
+...+..+..+|...|++++|+..|++..+.. +.+...|..+..+|...|++++|+..+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45666667777777777777777777776643 33455677777777777777777777776654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0023 Score=48.64 Aligned_cols=64 Identities=11% Similarity=-0.002 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 476 DGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
+...+..+...+...|++++|+..|+++++.. +-+...|..+..+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45556666666666666666666666666543 12345666666666666666666666666553
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0022 Score=52.93 Aligned_cols=98 Identities=13% Similarity=0.011 Sum_probs=54.3
Q ss_pred HhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HhHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 008633 210 RAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLH----------VGAASSLFNSMKGKVLFNVMTYNIVISGWSK 279 (558)
Q Consensus 210 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~----------~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~ 279 (558)
+.+.+++|++.++...+.. +.+...|+.+..++...++ +++|+..|++...-.|.+..+|..+..+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3344455555555555433 2244455544445444443 3466666666655555566666666666665
Q ss_pred c-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 008633 280 L-----------GQVVEMERVLKEIVAEGFSPDSLTFSFLIE 310 (558)
Q Consensus 280 ~-----------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 310 (558)
. |++++|++.|++..+. .|+...|...+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 5 3677777777777764 455555544333
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.1 Score=56.18 Aligned_cols=29 Identities=7% Similarity=0.103 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 008633 336 DTNAYNAVISNYISVGDFDECMKYYKGMS 364 (558)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 364 (558)
+...|..+...+.+.++++.|++.|.++.
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 33444445555555555555555444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.023 Score=53.84 Aligned_cols=69 Identities=13% Similarity=0.061 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 008633 474 PSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQN 544 (558)
Q Consensus 474 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 544 (558)
+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.+++.......
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 4455566666555555566666666666666653 56556666666666666666666666666644333
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.016 Score=57.12 Aligned_cols=85 Identities=12% Similarity=0.122 Sum_probs=54.5
Q ss_pred CCChhHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-----C-CCCC-HHHHHHHHH
Q 008633 455 FGKCGMLLDLWHEMQE---SGYPSD----GEIYEYVIAGLCNIGQLENAVLVMEESLRK-----G-FCPS-RLVYSKLSN 520 (558)
Q Consensus 455 ~g~~~~A~~~~~~m~~---~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~~l~~ 520 (558)
.|++++|+.++++..+ .-+.|+ ..+++.+..+|...|++++|..+++++++- | -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4566666666665543 112222 346777777777777877777777776641 2 1222 456777777
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 008633 521 KLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 521 ~~~~~g~~~~A~~~~~~m~ 539 (558)
.|...|++++|..++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 8888888888887777664
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.17 Score=54.46 Aligned_cols=155 Identities=10% Similarity=0.040 Sum_probs=97.1
Q ss_pred HHHHhcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 171 KALGRRKFFDFMCN-VLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHV 249 (558)
Q Consensus 171 ~~~~~~~~~~~a~~-l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 249 (558)
......+++++|.+ ++..+ ++......++..+.+.|..+.|+++.+.-. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 33446788888866 44221 113334777788888888888887663211 113445678899
Q ss_pred hHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 250 GAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMK 329 (558)
Q Consensus 250 ~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 329 (558)
+.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-+...
T Consensus 669 ~~A~~~~~~~~-----~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 669 TLARDLLTDES-----AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHHTTCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-----cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 99988876553 677899999999999999999998887743 3344444555666666555555544
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 008633 330 EKGCGPDTNAYNAVISNYISVGDFDECMKYYKGM 363 (558)
Q Consensus 330 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 363 (558)
..|. ++....+|.+.|++++|++++.++
T Consensus 735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 735 TTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4431 233334455556666665555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.056 Score=51.25 Aligned_cols=63 Identities=14% Similarity=0.052 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 301 DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 301 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33344443333333344444444444444442 3343444444444444444444444444433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.033 Score=54.88 Aligned_cols=88 Identities=17% Similarity=0.187 Sum_probs=50.4
Q ss_pred HHcCCChhHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-----C-CCCC-HHHHHH
Q 008633 452 LSGFGKCGMLLDLWHEMQES---GYPSD----GEIYEYVIAGLCNIGQLENAVLVMEESLRK-----G-FCPS-RLVYSK 517 (558)
Q Consensus 452 ~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~~~~~ 517 (558)
+...|++++|+.++++..+. -+.|+ ..+++.+...|...|++++|..++++++.- | -.|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44556666666666666531 11222 335666666666677777776666665531 1 1122 355666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 008633 518 LSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
|...|...|++++|..++++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 6666777777777776666553
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.014 Score=57.44 Aligned_cols=60 Identities=12% Similarity=0.183 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-----CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 339 AYNAVISNYISVGDFDECMKYYKGMSS-----YN-CEPN-MDTYTRLISGLLKSRKVADALEVFEEM 398 (558)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 398 (558)
+++.|..+|...|++++|+.++++..+ .| -.|+ ..+++.|...|...|++++|+.++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 444444445555555555444444332 11 0111 234455555555555555555555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.032 Score=55.00 Aligned_cols=61 Identities=10% Similarity=-0.016 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAE-----G-FSPD-SLTFSFLIEGLGRAGRIDDAIEVFDTMK 329 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 329 (558)
+++.|+..|...|++++|+.++++.... | -.|+ ..+++.|...|...|++++|..++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4555555555555555555555554431 1 1122 2345555555555666666555555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.049 Score=40.46 Aligned_cols=48 Identities=8% Similarity=-0.033 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 458 CGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 458 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
.++|..++++..+.. +-+......+...+.+.|++++|+..|+++.+.
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555555444432 223344444444445555555555555554443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.018 Score=43.18 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=10.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIV 294 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (558)
.|..+..++...|++++|...|++..
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333444444444444444444433
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.027 Score=42.92 Aligned_cols=70 Identities=13% Similarity=0.040 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 008633 440 LSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESG------YPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS 511 (558)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 511 (558)
.+..-+..|...+...|+++.|...++...+.. -.+...++..+..++.+.|++++|+.+++++.+. .|+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~ 78 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPE 78 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCC
Confidence 345566677778888888888888887766421 1234567788888888888888888888888764 455
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.042 Score=40.98 Aligned_cols=54 Identities=9% Similarity=0.099 Sum_probs=25.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 008633 172 ALGRRKFFDFMCNVLSDMAKEGVNPDLE-TLSIVMDSFIRAGQVYKAIQMLGRLED 226 (558)
Q Consensus 172 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~-t~~~li~~~~~~g~~~~A~~~~~~~~~ 226 (558)
.+.+.|++++|+..+++..+.. +.+.. .+..+..++...|++++|++.|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444455555555555544432 12333 444444445555555555555555444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.059 Score=43.85 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHhHHH
Q 008633 423 PHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFG---KCGMLLDLWHEMQESGYPS--DGEIYEYVIAGLCNIGQLENAV 497 (558)
Q Consensus 423 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 497 (558)
...+.+-|.+..+.+. ++..+...+..++++.+ +.++++.++++..+.+ .| +...+-.+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4455556665555443 66677777777777776 4557777777777653 23 2445555666677777777777
Q ss_pred HHHHHHHhCCCCCC
Q 008633 498 LVMEESLRKGFCPS 511 (558)
Q Consensus 498 ~~~~~m~~~g~~p~ 511 (558)
++++.+++. .|+
T Consensus 92 ~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 92 KYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHH--CTT
T ss_pred HHHHHHHhc--CCC
Confidence 777777755 454
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.20 E-value=1.2 Score=37.25 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=21.9
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 244 CQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEI 293 (558)
Q Consensus 244 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 293 (558)
.+.|+++.|.++.+.+. +...|..|.......|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLN-----DSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHHC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHhC-----CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34455555554444431 3444555555555555555555555443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.15 Score=37.69 Aligned_cols=46 Identities=9% Similarity=0.078 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 319 DDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 319 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
++|..++++..+.... ++.....+...+.+.|++++|+..|+++.+
T Consensus 26 ~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444443322 333444444444444444444444444443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.93 Score=35.64 Aligned_cols=139 Identities=13% Similarity=0.117 Sum_probs=82.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 008633 175 RRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASS 254 (558)
Q Consensus 175 ~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~ 254 (558)
-.|..++..++..+.... .+..-|+.+|.-....-+-+-..++++.+-+. .|. ..+|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 346666666666666553 24555666665555555555555555544331 111 12344444444
Q ss_pred HHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008633 255 LFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCG 334 (558)
Q Consensus 255 ~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 334 (558)
.+-.+.. +....+..++.+...|+-++..+++.++.. +.+|+......+..+|.+.|+..++.+++.+..+.|++
T Consensus 83 C~~~~n~----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 83 CGVINNT----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHTTC----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcc----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4433322 445566667777777777777777777543 23566777777777788888888888877777777754
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.18 Score=38.20 Aligned_cols=25 Identities=4% Similarity=-0.116 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Q 008633 201 LSIVMDSFIRAGQVYKAIQMLGRLE 225 (558)
Q Consensus 201 ~~~li~~~~~~g~~~~A~~~~~~~~ 225 (558)
+..+...+.+.|++..|..+|+...
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al 32 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQAL 32 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHH
Confidence 3344444444444444444444433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.84 E-value=0.17 Score=41.14 Aligned_cols=79 Identities=10% Similarity=0.087 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHhhcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008633 217 AIQMLGRLEDFGLKFDAESLNVVLWCLCQRL---HVGAASSLFNSMKGKVLF--NVMTYNIVISGWSKLGQVVEMERVLK 291 (558)
Q Consensus 217 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~---~~~~A~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~ 291 (558)
+.+-|.+..+.|. ++..+...+..++++.+ +++++..+|+.......| +...+-.|.-++.+.|++++|.+.++
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3344444443332 45555555555555555 344555555554433212 23344445555566666666666666
Q ss_pred HHHHc
Q 008633 292 EIVAE 296 (558)
Q Consensus 292 ~m~~~ 296 (558)
.+.+.
T Consensus 96 ~lL~i 100 (152)
T 1pc2_A 96 GLLQT 100 (152)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 65553
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.75 E-value=1.6 Score=36.46 Aligned_cols=97 Identities=14% Similarity=0.161 Sum_probs=47.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 313 GRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADAL 392 (558)
Q Consensus 313 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 392 (558)
...|+++.|.++.+.+ -+...|..|.+...+.|+++-|++.|.+..+ +..+.-.|.-.|+.+.-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3455666665555443 1455566666666666666666666665542 334444444455555544
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 008633 393 EVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMY 430 (558)
Q Consensus 393 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 430 (558)
.+-+.....|- ++.....+...|+++++.+++
T Consensus 81 kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 81 KMQNIAQTRED------FGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHH
Confidence 44443333331 122222333445555555554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.69 E-value=1.2 Score=34.98 Aligned_cols=63 Identities=21% Similarity=0.202 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 008633 445 YKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGF 508 (558)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 508 (558)
....++.+..+|+-+...+++.++... .+|++...-.+..+|.+.|+..+|.+++.++.++|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 333444455555555555555554321 244555555555555555555555555555555553
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.53 Score=42.78 Aligned_cols=83 Identities=13% Similarity=0.200 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc-CCHHH
Q 008633 320 DAIEVFDTMKEKGCGPD---TNAYNAVISNYISV-----GDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKS-RKVAD 390 (558)
Q Consensus 320 ~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~ 390 (558)
.|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++..+.+-.-+..++......++.. |+.++
T Consensus 181 ~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 181 AAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 344444444443 222 33555666666653 66666666666666542111255555555666553 66666
Q ss_pred HHHHHHHHHHCCCC
Q 008633 391 ALEVFEEMLDRGIV 404 (558)
Q Consensus 391 A~~~~~~m~~~~~~ 404 (558)
|.+.+++.......
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 66666666665444
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.34 Score=44.07 Aligned_cols=107 Identities=15% Similarity=0.073 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc-----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHh
Q 008633 424 HAAMMMYKKARKVGCKLS---LTAYKLLLRRLSG-----FGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNI-GQLE 494 (558)
Q Consensus 424 ~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~ 494 (558)
..|...++++.+.. |+ -..|..+...|.+ .|+.++|.+.|++..+.+-.-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 44555555555543 33 4566777777777 488888888888888753111366777777877774 8888
Q ss_pred HHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 495 NAVLVMEESLRKGFC--PSRLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 495 ~A~~~~~~m~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
+|.+.+++.+..... |+....+ .+.-++|..+++++..
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan--------~~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLV--------ILSQKRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHH--------HHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHH--------HHHHHHHHHHHHHhHH
Confidence 888888888877555 5533222 2233566666665543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.38 E-value=10 Score=40.78 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=7.1
Q ss_pred hcCCHHHHHHHHHHhh
Q 008633 349 SVGDFDECMKYYKGMS 364 (558)
Q Consensus 349 ~~g~~~~A~~~~~~m~ 364 (558)
-.|+.+.+..+.+.+.
T Consensus 536 ~~g~~e~~~~li~~L~ 551 (963)
T 4ady_A 536 NYGRQELADDLITKML 551 (963)
T ss_dssp TTTCGGGGHHHHHHHH
T ss_pred hCCChHHHHHHHHHHH
Confidence 3344444444444444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.02 E-value=1.7 Score=34.89 Aligned_cols=53 Identities=8% Similarity=0.019 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008633 281 GQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCG 334 (558)
Q Consensus 281 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 334 (558)
++.++|.++|+.+++.+-.- ...|.....--.+.|++.+|.+++...+..+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 45555555555554432111 333333334444555555555555555555444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.54 E-value=13 Score=39.90 Aligned_cols=241 Identities=12% Similarity=0.034 Sum_probs=118.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCH--HHHH
Q 008633 272 IVISGWSKLGQVVEMERVLKEIVAEGF-------SPDSLTFSFLIEGLGRAGR-IDDAIEVFDTMKEKGCGPDT--NAYN 341 (558)
Q Consensus 272 ~li~~~~~~g~~~~A~~~~~~m~~~g~-------~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~p~~--~~~~ 341 (558)
.+.-+....|..+++..++.......- .+....-.++.-+++-.|. -+++.+.+..+....-. .. ..--
T Consensus 416 llaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~-~~~~~Aal 494 (963)
T 4ady_A 416 LYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSA-TSGEAAAL 494 (963)
T ss_dssp HHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHH
Confidence 344445555655667776666554311 0111112222222322332 13445555554443110 01 1111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHH
Q 008633 342 AVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLIS--GLLKSRKVADALEVFEEMLDRGIVPSTGTI--TSFLEPL 417 (558)
Q Consensus 342 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--~~ll~~~ 417 (558)
+|...+.-.|+-+....++..+.+. .+......+.- ++...|+.+.+..+++.+.... .|....- .++.-+|
T Consensus 495 ALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAy 570 (963)
T 4ady_A 495 GMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAY 570 (963)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHT
T ss_pred HHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHh
Confidence 2333444567777777777766653 12233333333 3446678887777777776631 2222211 1233456
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-hHH
Q 008633 418 CSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQL-ENA 496 (558)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A 496 (558)
+..|+.....+++..+.... ..++.....+.-++...|+.+.+.++++.+.+.+ .|....-.++.-|....|+. .+|
T Consensus 571 aGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~a 648 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSA 648 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHH
T ss_pred cCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHH
Confidence 66778766666777776532 2233333344444555677666677776666543 34443334444445555553 567
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008633 497 VLVMEESLRKGFCPSRLVYSKLSNKL 522 (558)
Q Consensus 497 ~~~~~~m~~~g~~p~~~~~~~l~~~~ 522 (558)
+..+..+.. .+|..+-..-+.++
T Consensus 649 id~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 649 IDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp HHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHcc---CCCHHHHHHHHHHH
Confidence 778877764 24544443333333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=92.01 E-value=2.3 Score=34.25 Aligned_cols=51 Identities=6% Similarity=0.011 Sum_probs=24.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 008633 456 GKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKG 507 (558)
Q Consensus 456 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 507 (558)
++.++|.++|+.+.+..-. =...|......-.++|+++.|.+++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 4445555555554432111 14444444444555555666666665555544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.72 E-value=2 Score=33.49 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHhHHHH
Q 008633 424 HAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGM---LLDLWHEMQESGYPS--DGEIYEYVIAGLCNIGQLENAVL 498 (558)
Q Consensus 424 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~ 498 (558)
..+.+-|......|. ++..+--.+..++.+...... ++.++.++...+ .| .....-.+.-++.+.|++++|.+
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 344444444444332 555565566666666665544 666666666543 22 23344445556777777777777
Q ss_pred HHHHHHhC
Q 008633 499 VMEESLRK 506 (558)
Q Consensus 499 ~~~~m~~~ 506 (558)
+++.+++.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777755
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=91.53 E-value=2 Score=33.53 Aligned_cols=82 Identities=11% Similarity=0.077 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH---HHHHHHHhhcCCCC--ChhhHHHHHHHHHhcCCHHHHHH
Q 008633 214 VYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGA---ASSLFNSMKGKVLF--NVMTYNIVISGWSKLGQVVEMER 288 (558)
Q Consensus 214 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~---A~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~ 288 (558)
...+.+-|......|. ++..+--.+..++++..+... ++.+++.+.....| .....-.|.-++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444444444444332 455555556666666655444 55666655444322 23334455566666667777766
Q ss_pred HHHHHHHc
Q 008633 289 VLKEIVAE 296 (558)
Q Consensus 289 ~~~~m~~~ 296 (558)
.++.+.+.
T Consensus 96 ~~~~lL~~ 103 (126)
T 1nzn_A 96 YVRGLLQT 103 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=90.87 E-value=9.9e-05 Score=71.28 Aligned_cols=234 Identities=15% Similarity=0.084 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008633 233 AESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGL 312 (558)
Q Consensus 233 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 312 (558)
+.+|..|..+..+.+++.+|++.|= +.. |...|..+|....+.|.+++-.+++...++..-.|. .=+.|+-+|
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI--kA~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ay 126 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI--KAD---DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFAL 126 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC--CCS---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH--hCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHH
Confidence 3456666777766676666665442 222 556677777777777777777777765555433333 334677777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 313 GRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADAL 392 (558)
Q Consensus 313 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 392 (558)
++.++..+-.+++ -.||..-...+.+-|...|.++.|.-+|..+.. |..|..++.+.|++..|.
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSST
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHH
Confidence 7777755433332 224544455667777777777777766665442 333444555666666665
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCC
Q 008633 393 EVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESG 472 (558)
Q Consensus 393 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 472 (558)
+.-++ .-+..||..+-.+|...+.+.-|...--.++-.. .....++..|-..|.+++.+.+++.-....
T Consensus 191 daArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglglE 259 (624)
T 3lvg_A 191 DGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGLE 259 (624)
T ss_dssp TTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTST
T ss_pred HHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Confidence 43221 2345667777777777777766644433332211 112234555777788888888887776432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 008633 473 YPSDGEIYEYVIAGLCNIGQLENAVLVMEE 502 (558)
Q Consensus 473 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (558)
+.....|+-|.-.|++- +.++-.+.++.
T Consensus 260 -rAHmGmFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 260 -RAHMGMFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp -TCCHHHHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred -chhHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 44666787777777765 45555555543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=90.71 E-value=0.037 Score=53.82 Aligned_cols=215 Identities=13% Similarity=0.073 Sum_probs=129.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008633 162 DVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLW 241 (558)
Q Consensus 162 ~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 241 (558)
|...|..+|.+..+.|.+++-+..+...++..- +...=+.|+-+|++.++..+-.+++ -.|+..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHH
Confidence 444577788888888888888777765554422 3334456777888887765533332 2356656667777
Q ss_pred HHHhcCCHhHHHHHHHHhhc---------------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008633 242 CLCQRLHVGAASSLFNSMKG---------------------KVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSP 300 (558)
Q Consensus 242 ~~~~~~~~~~A~~~~~~m~~---------------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 300 (558)
-|...|.++.|.-+|..+.. +-..++.||-.+-.+|...+.+.-|.-.--.+.-. |
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a 229 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A 229 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H
Confidence 77777888777777766532 11236778888888888888877665544443321 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCC------CHH
Q 008633 301 DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS-YNCEP------NMD 373 (558)
Q Consensus 301 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p------~~~ 373 (558)
| -...++..|-..|.+++.+.+++.-... -......|+-|.-.|++- +.++..+.++..-. -+++. ...
T Consensus 230 d--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ah 305 (624)
T 3lvg_A 230 D--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 305 (624)
T ss_dssp S--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTT
T ss_pred H--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 1 1223555666777777777777765532 123566777777777665 34444443332211 11111 234
Q ss_pred HHHHHHHHHHhcCCHHHHH
Q 008633 374 TYTRLISGLLKSRKVADAL 392 (558)
Q Consensus 374 ~~~~li~~~~~~g~~~~A~ 392 (558)
.|.-++-.|+.-.+++.|.
T Consensus 306 LW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 306 LWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHhcchhHHHHH
Confidence 5777777777777777664
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.49 E-value=14 Score=36.21 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 008633 177 KFFDFMCNVLSDMAKE-----GVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLED 226 (558)
Q Consensus 177 ~~~~~a~~l~~~m~~~-----g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~ 226 (558)
|++++|++.+-.+.+. ...........++..|...|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6788888877666532 2344567788888889999999888877776654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.20 E-value=0.88 Score=47.73 Aligned_cols=125 Identities=15% Similarity=0.104 Sum_probs=79.8
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHhC-CHHHHHHHHHHHHhC------CC-CCCH--
Q 008633 167 NVIVKALGRRKF-FDFMCNVLSDMAKEGVNPDLETL--SIVMDSFIRAG-QVYKAIQMLGRLEDF------GL-KFDA-- 233 (558)
Q Consensus 167 ~~li~~~~~~~~-~~~a~~l~~~m~~~g~~~~~~t~--~~li~~~~~~g-~~~~A~~~~~~~~~~------g~-~~~~-- 233 (558)
..++..+...++ ++.|+.+|+++.... |...++ ..++..+.+.+ +--+|++++.+..+. .. ..+.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344455555666 588999999998864 332322 22333322222 233455555544321 11 1121
Q ss_pred --------HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 234 --------ESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEI 293 (558)
Q Consensus 234 --------~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 293 (558)
...+.=.+.+...|+++.|+++-++...-.|.+-.+|..|..+|.+.|+++.|+-.+..+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 112222344667899999999999988877888999999999999999999999888776
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.17 E-value=1.1 Score=43.36 Aligned_cols=54 Identities=4% Similarity=-0.029 Sum_probs=25.2
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 240 LWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEI 293 (558)
Q Consensus 240 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 293 (558)
+..+...|+.++|...++.+....|.+...|..+|.++.+.|+..+|++.|+.+
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444444444444444444434444444444444444444444444444443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.04 E-value=3.7 Score=43.05 Aligned_cols=54 Identities=19% Similarity=0.081 Sum_probs=38.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 484 IAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 484 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
...|...|+++-|+++.++++.. .|+ -.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34456677788888888777754 344 6778888888888888888877777664
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.69 E-value=1.8 Score=31.99 Aligned_cols=48 Identities=8% Similarity=0.091 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008633 178 FFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLE 225 (558)
Q Consensus 178 ~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 225 (558)
+.-+..+-+..+....+.|++....+.+++|-+.+++..|+.+++-++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334455555555555566666666666666666666666666666655
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.50 E-value=4.2 Score=39.18 Aligned_cols=75 Identities=8% Similarity=0.054 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 008633 445 YKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLR-----KGFCPSRLVYSKLS 519 (558)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l~ 519 (558)
...++..+...|+.++|...+..+.... +-+...|..++.++.+.|+..+|++.|+++.+ .|+.|...+-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4456667778888888888888877643 55777888888899999999999888888654 38888876554443
Q ss_pred H
Q 008633 520 N 520 (558)
Q Consensus 520 ~ 520 (558)
.
T Consensus 253 ~ 253 (388)
T 2ff4_A 253 R 253 (388)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.25 E-value=17 Score=35.52 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=94.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHH
Q 008633 156 HPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKE-GVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAE 234 (558)
Q Consensus 156 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~-g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 234 (558)
......+......++..|...|+++...+.+.-+.+. |.. ......+++.+ ...+.... .++..
T Consensus 49 ~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~---------~~~l~~~~----~~d~~ 113 (445)
T 4b4t_P 49 ASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKV---------MEYLKSSK----SLDLN 113 (445)
T ss_dssp SCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHH---------HHHHHHHC----TTHHH
T ss_pred ccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHH---------HHHHhcCC----chhHH
Confidence 3345566788888999999999999887777666543 322 22222333322 12222111 11222
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcC-CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHH
Q 008633 235 SLNVVLWCLCQRLHVGAASSLFNSMKGK-VLF---NVMTYNIVISGWSKLGQVVEMERVLKEIVAE--GFSPD---SLTF 305 (558)
Q Consensus 235 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~ 305 (558)
+...++..+. ...++ +-. .......|...|...|++.+|.+++.++... |.... ...+
T Consensus 114 ~~~~~i~~l~-------------~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~ 180 (445)
T 4b4t_P 114 TRISVIETIR-------------VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFI 180 (445)
T ss_dssp HHHHHHHCCS-------------SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHH
T ss_pred HHHHHHHHHH-------------HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 2211111110 00011 111 1123345667777777777777777776543 21111 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 008633 306 SFLIEGLGRAGRIDDAIEVFDTMKE----KGCGPD--TNAYNAVISNYISVGDFDECMKYYKGMS 364 (558)
Q Consensus 306 ~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 364 (558)
...++.|...+++.+|..++.++.. ....|+ ...|...+..+...+++.+|-+.|.++.
T Consensus 181 l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 181 LEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5566677777777777777766532 122222 2345556666667777777776666654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.06 E-value=8.4 Score=43.12 Aligned_cols=191 Identities=14% Similarity=0.045 Sum_probs=104.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------------------
Q 008633 238 VVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGF------------------- 298 (558)
Q Consensus 238 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------------- 298 (558)
.++..+.+.+..+.|.++...... +....-.+..+|...|++++|...|.+... |+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 345555566666666555443332 344444556666667777777666654311 00
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 008633 299 ----SPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDT----NAYNAVISNYISVGDFDECMKYYKGMSSYNCEP 370 (558)
Q Consensus 299 ----~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 370 (558)
..-..-|..++..+-+.+.++.+.++-...++....-+. ..|..+.+++...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 011234667777777888888877776666554322121 2567778888888888888888877766533
Q ss_pred CHHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChh-HHHHHHHHHHH
Q 008633 371 NMDTYTRLISGLLKSR------------KVADALEVFEEMLDRG--IVPSTGTITSFLEPLCSYGPPH-AAMMMYKKARK 435 (558)
Q Consensus 371 ~~~~~~~li~~~~~~g------------~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~ 435 (558)
-......+|..+|..| ..++..+++....+.. +......|..|=.-....|++. .|.-+|+.+.+
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 3445666666666544 4455556654432211 1111122333333334456654 44556666554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.27 E-value=13 Score=41.62 Aligned_cols=146 Identities=10% Similarity=0.040 Sum_probs=99.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------------------
Q 008633 342 AVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGI------------------ 403 (558)
Q Consensus 342 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------------ 403 (558)
.++..+.+.+..+.|.++..... .+...--.+..+|...|++++|.+.|.+... |+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 35556666777777766554433 2444444566778889999999999876421 11
Q ss_pred -----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCC
Q 008633 404 -----VPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLS----LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYP 474 (558)
Q Consensus 404 -----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 474 (558)
..-...|..++..+.+.+.++.+.++-+.+.+....-+ ...|..+.+.+...|++++|...+-.+.+...
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 11123467777788888999999988887776432222 23678889999999999999999988876543
Q ss_pred CCHHHHHHHHHHHHhcCCHhH
Q 008633 475 SDGEIYEYVIAGLCNIGQLEN 495 (558)
Q Consensus 475 p~~~~~~~li~~~~~~g~~~~ 495 (558)
-......++..+|..|..+.
T Consensus 970 -r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHH
T ss_pred -HHHHHHHHHHHHHhCCChhh
Confidence 34577778888887665443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.30 E-value=21 Score=33.15 Aligned_cols=164 Identities=15% Similarity=0.074 Sum_probs=90.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHH
Q 008633 238 VVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERV----LKEIVAEGFSPDSLTFSFLIEGLG 313 (558)
Q Consensus 238 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 313 (558)
++..-|.+.+++++|.+++..-. ..+.+.|+...|.++ ++-+.+.++++|..+...++..+.
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA--------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVS--------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34445667777777777654321 123334444444333 344445566677666666666655
Q ss_pred hcCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 008633 314 RAGRID-DAIEVFDTMK----EKG--CGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSR 386 (558)
Q Consensus 314 ~~g~~~-~a~~~~~~m~----~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 386 (558)
....-+ .=.++.++++ +.| ..-|......+...|.+.+++.+|+..|- . |..++...|..++.-+.+.+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTS
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhc
Confidence 443211 1122222222 222 33467788888999999999999988883 2 32344466766665555444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008633 387 KVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKAR 434 (558)
Q Consensus 387 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 434 (558)
... .++...-.+++. |...++...|..+++...
T Consensus 182 ~~~--------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 182 ESH--------------TAPLYCARAVLP-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp CGG--------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred CCc--------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence 322 122333344443 556678888877665544
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=85.48 E-value=5.4 Score=31.24 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHH
Q 008633 216 KAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVI 274 (558)
Q Consensus 216 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li 274 (558)
+..+-++.+....+.|++.+..+.+.++-+.+++..|.++|+.++.+..+....|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 33444444445555555555555555555555555555555555544333333444443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.38 E-value=23 Score=32.84 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHH----HHHHHhCCCCCCHHHHHHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQM----LGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~----~~~~~~~g~~~~~~~~~~ll 240 (558)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...|.++ ++-..+.++++|......|+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 56677777888888888887765432 234455555544443 34455677777877777777
Q ss_pred HHHHhcCCHhHH-HHHHHHhh-------cCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 008633 241 WCLCQRLHVGAA-SSLFNSMK-------GKVLFNVMTYNIVISGWSKLGQVVEMERVL 290 (558)
Q Consensus 241 ~~~~~~~~~~~A-~~~~~~m~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 290 (558)
..+.....-+-. ..+.+++. ....-|......+...|.+.+++.+|...|
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 766554432111 11122111 111225555666666677777766666655
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=84.44 E-value=7.3 Score=28.79 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=38.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 457 KCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLS 519 (558)
Q Consensus 457 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 519 (558)
+.-++.+-++.+...++.|++.+..+.+.+|.+.+++..|+++++-...+ ..+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 34455556666666667777777777777777777777777777765544 122234455544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=83.93 E-value=11 Score=29.54 Aligned_cols=73 Identities=10% Similarity=0.088 Sum_probs=48.4
Q ss_pred CCCCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 008633 437 GCKLSLTAYKLLLRRLSGFGKC---GMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS 511 (558)
Q Consensus 437 ~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 511 (558)
+-.|+..+--.+..++.+..+. .+++.+++++.+.+..-....+-.+.-|+.+.|++++|.++.+.+++. .|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 4456666666666677776554 456777777776541113445666667788888888888888888755 565
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=83.19 E-value=44 Score=34.23 Aligned_cols=134 Identities=10% Similarity=-0.047 Sum_probs=64.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 008633 174 GRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAAS 253 (558)
Q Consensus 174 ~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~ 253 (558)
.+.|++..+..+...+...-+ ..-..|..+...+ ......+...++.+-.. .+.....-+.-+..+.+.+++....
T Consensus 17 ~~~~~~~~~~~l~~~l~~~pL-~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~~~~~w~~~l 92 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLKDYPL-YPYLEYRQITDDL-MNQPAVTVTNFVRANPT--LPPARTLQSRFVNELARREDWRGLL 92 (618)
T ss_dssp HHTTCHHHHHHHSGGGTTSTT-HHHHHHHHHHHTG-GGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHhhcCCCc-HHHHHHHHHHhCc-ccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHhCCCHHHHH
Confidence 345777766666555532211 1112333332222 11234444444433221 1222233345556666677776666
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 008633 254 SLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAG 316 (558)
Q Consensus 254 ~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 316 (558)
..+.. .|.+...-.....+....|+..+|....+.+-..|. .....+..++..+.+.|
T Consensus 93 ~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 93 AFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTT
T ss_pred HhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCC
Confidence 54432 234555555666777777777777666666655442 22334444555554444
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.69 E-value=6.4 Score=32.23 Aligned_cols=35 Identities=14% Similarity=0.060 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCc
Q 008633 511 SRLVYSKLSNKLLASNKLESAYNLFRKIKIARQND 545 (558)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 545 (558)
+...-..+..+|.+.|++++|+..++.+....-.|
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~ 155 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTP 155 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCH
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCH
Confidence 34555568888899999999999888776544443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=82.24 E-value=17 Score=28.85 Aligned_cols=73 Identities=10% Similarity=0.088 Sum_probs=49.9
Q ss_pred CCCCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 008633 437 GCKLSLTAYKLLLRRLSGFGKC---GMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS 511 (558)
Q Consensus 437 ~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 511 (558)
+-.++..+--.+..++.+..+. .+++.+++++...+..-.....-.+.-++.+.|++++|.++.+.+++. .|+
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 3356777777777777777654 456778877776432223445555666788888888888888888876 565
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.49 E-value=17 Score=28.42 Aligned_cols=66 Identities=9% Similarity=-0.044 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 474 PSDGEIYEYVIAGLCNIGQ---LENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 474 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
.|+..+--.+.+++.+..+ ..+++.++++..+.+..-....+-.|.-++.+.|++++|.++.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444444444444433 23455555555543310113444445555555555555555555554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 558 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.56 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.55 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.24 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.19 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.18 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.17 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.12 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.09 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.01 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.99 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.95 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.92 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.45 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.45 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.4 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.38 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.38 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.37 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.35 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.3 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.28 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.23 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.23 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.23 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.23 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.07 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.02 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.0 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.89 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.89 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.82 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.75 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.68 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.66 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.64 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.62 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.62 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.57 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.56 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.55 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.54 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.47 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.46 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.4 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.39 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.29 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.29 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.24 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.85 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.73 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.64 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.24 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.17 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.01 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.71 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.7 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.31 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.12 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 88.61 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 87.51 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 85.25 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.65 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.1e-20 Score=184.80 Aligned_cols=372 Identities=13% Similarity=0.064 Sum_probs=222.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHh
Q 008633 171 KALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVG 250 (558)
Q Consensus 171 ~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~ 250 (558)
..+-+.|++++|.+.++++.+.. +-+...+..+...+.+.|++++|++.++++.+.. +-+..++..+..+|.+.|+++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence 44556677777777777766542 2346666666677777777777777777766543 224566666777777777777
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 251 AASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKE 330 (558)
Q Consensus 251 ~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 330 (558)
+|...++......+.+...+..........+....+............ ................+....+...+.....
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHhhc
Confidence 777777666555444555555555555555555555555544444332 2333333444455555666666666665555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 008633 331 KGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTI 410 (558)
Q Consensus 331 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 410 (558)
.... +...+..+...+...|++++|...+++..+.. +-+...|..+...+...|++++|...+++....+ ..+...+
T Consensus 164 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 240 (388)
T d1w3ba_ 164 TQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred cCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHH
Confidence 4322 45556666666666666666666666665542 3345556666666666666666666666665543 2344455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 411 TSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNI 490 (558)
Q Consensus 411 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 490 (558)
..+...+...|++++|...++++.+.. +-+..++..+...+...|++++|++.++...... +.+...+..+...+...
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHC
Confidence 555566666666666666666666543 3345566666666666667777766666665542 44555666666666666
Q ss_pred CCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhhhccc
Q 008633 491 GQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRLWRSK 554 (558)
Q Consensus 491 g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 554 (558)
|++++|+..++++++. .|+ ..++..+..+|.+.|++++|.+.+++.. .+.|+....|...
T Consensus 319 ~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~l~P~~~~a~~~l 379 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAI--RISPTFADAYSNM 379 (388)
T ss_dssp TCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH--TTCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHH
Confidence 7777777766666643 333 5566666666666777777776666665 3445544444433
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=5.9e-19 Score=172.24 Aligned_cols=372 Identities=14% Similarity=0.054 Sum_probs=309.0
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 008633 144 EAMVLFFNWAIKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGR 223 (558)
Q Consensus 144 ~~~~~ff~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~ 223 (558)
+.|...++-+.+.. +-+..++..+..++.+.|++++|...+++..+.. +-+..++..+...+.+.|++++|++.+..
T Consensus 16 ~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 92 (388)
T d1w3ba_ 16 EAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccccccccc
Confidence 44555555544432 3468899999999999999999999999998864 34678999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 008633 224 LEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSL 303 (558)
Q Consensus 224 ~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 303 (558)
+.+... .+..............+....+............................+....+...+....... +-+..
T Consensus 93 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 170 (388)
T d1w3ba_ 93 ALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAV 170 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHH
T ss_pred cccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cchhH
Confidence 987653 3555566666666667777777766666655455567777778888888999999999988887764 33567
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 008633 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLL 383 (558)
Q Consensus 304 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 383 (558)
.+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++..+.+ +.+...+..+...+.
T Consensus 171 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 248 (388)
T d1w3ba_ 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHH
Confidence 7888889999999999999999999887544 67889999999999999999999999998765 567788888999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 008633 384 KSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLD 463 (558)
Q Consensus 384 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 463 (558)
+.|++++|...|++..+.. +-+...+..+...+...|++++|.+.++...... +.+...+..+...+...|++++|++
T Consensus 249 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 326 (388)
T d1w3ba_ 249 EQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp HTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHH
Confidence 9999999999999998864 3356778888889999999999999999988754 5678889999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 008633 464 LWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLLASNK 527 (558)
Q Consensus 464 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 527 (558)
.+++..+.. +-+..+|..+..++.+.|++++|+..|+++++. .|+ ...|..++.+|.+.|+
T Consensus 327 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 327 LYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 999998753 446778999999999999999999999999965 565 7889999999988875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=6.5e-13 Score=125.75 Aligned_cols=242 Identities=14% Similarity=0.053 Sum_probs=137.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 271 NIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV 350 (558)
Q Consensus 271 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 350 (558)
-.....+.+.|++++|...|++..+.. +-+..+|..+..++...|++++|...+++..+.... +...+..+...|...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccc
Confidence 345667788888888888888888764 225677888888888888888888888888776543 667777888888888
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 008633 351 GDFDECMKYYKGMSSYNCEPNMDTY-TRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMM 429 (558)
Q Consensus 351 g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 429 (558)
|++++|.+.+++..... |+.... ........ . .+.......+..+...+...+|...
T Consensus 101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-G-------------------AGLGPSKRILGSLLSDSLFLEVKEL 158 (323)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhc--cchHHHHHhhhhhhh-h-------------------cccccchhhHHHHHHhhHHHHHHHH
Confidence 88888888888877642 221110 00000000 0 0000000001111222333444555
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 008633 430 YKKARKVG-CKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGF 508 (558)
Q Consensus 430 ~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 508 (558)
+.++.+.. ...+...+..+...+...|++++|+..+++..... +-+...|..+...+...|++++|++.++++++.
T Consensus 159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 235 (323)
T d1fcha_ 159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL-- 235 (323)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHH--
Confidence 54444322 22334455555555555666666666665555432 224455555566666666666666666665543
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 509 CPS-RLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 509 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
.|+ ..++..++.+|.+.|++++|.+.|++..
T Consensus 236 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 267 (323)
T d1fcha_ 236 QPGYIRSRYNLGISCINLGAHREAVEHFLEAL 267 (323)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 232 4555556666666666666666665554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.8e-12 Score=121.25 Aligned_cols=243 Identities=9% Similarity=0.015 Sum_probs=129.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 169 IVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLH 248 (558)
Q Consensus 169 li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~ 248 (558)
....+.+.|++++|+..|++..+.. +-+..+|..+..++...|++++|+..+.++.+... -+...+..+..+|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccccc
Confidence 4455667777777777777777653 23566777777777777777777777777766432 245666666677777777
Q ss_pred HhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 249 VGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTM 328 (558)
Q Consensus 249 ~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 328 (558)
+++|.+.++......+.....+........ ..+.......+..+...+...+|.+.+.+.
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 777777776664432211111100000000 000000011111222334445555555555
Q ss_pred HHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 008633 329 KEKGC-GPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPST 407 (558)
Q Consensus 329 ~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 407 (558)
.+... ..+..++..+...+...|++++|...|++..... +-+...|..+...|...|++++|.+.|++..+.. +-+.
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 240 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYI 240 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccH
Confidence 44322 2244555556666666666666666666655432 2345555666666666666666666666655532 1233
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008633 408 GTITSFLEPLCSYGPPHAAMMMYKKARK 435 (558)
Q Consensus 408 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 435 (558)
..+..+..+|...|++++|+..|+++.+
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455555555666666666666655544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.6e-09 Score=101.29 Aligned_cols=249 Identities=10% Similarity=0.074 Sum_probs=123.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008633 268 MTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAG-RIDDAIEVFDTMKEKGCGPDTNAYNAVISN 346 (558)
Q Consensus 268 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 346 (558)
..|+.+...+.+.+.+++|+++++++.+.. +-+...|+....++...| ++++|+..++...+.... +..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence 345555555666666666666666666542 123444555555555544 356666666666555433 45566666666
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 008633 347 YISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAA 426 (558)
Q Consensus 347 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 426 (558)
+.+.|++++|++.++++.+.. +.+...|..+...+...|++++|++.++++++.+ +-+...|+.+...+...+...
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~-- 197 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN-- 197 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC--
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccc--
Confidence 666666666666666665543 3445556666666666666666666666655542 123334443333333322211
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 427 MMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
..+.+++|++.+....+.. +.+...|..+...+. ....+++...++...+.
T Consensus 198 ---------------------------~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 198 ---------------------------DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDL 248 (315)
T ss_dssp ---------------------------SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHH
T ss_pred ---------------------------hhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHh
Confidence 0111345555555555432 334455555444332 33345555666555543
Q ss_pred CCCC-CHHHHHHHHHHHHhc--C-------CHHHHHHHHHHHHHhcCCchhhhhhc
Q 008633 507 GFCP-SRLVYSKLSNKLLAS--N-------KLESAYNLFRKIKIARQNDYARRLWR 552 (558)
Q Consensus 507 g~~p-~~~~~~~l~~~~~~~--g-------~~~~A~~~~~~m~~~~~~~~~~~~~~ 552 (558)
...+ +...+..++..|... + .+++|.++++.+.. ...|....+|+
T Consensus 249 ~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~-~~DpiR~~yw~ 303 (315)
T d2h6fa1 249 QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAK-EKDTIRKEYWR 303 (315)
T ss_dssp TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH-TTCGGGHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHH
Confidence 2111 244444555554322 2 23444445444332 34455556664
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=2.5e-08 Score=94.28 Aligned_cols=265 Identities=12% Similarity=0.026 Sum_probs=138.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-C
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAE----GFSP-DSLTFSFLIEGLGRAGRIDDAIEVFDTMKEK----GCG--P-D 336 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~--p-~ 336 (558)
.++.+...+...|++++|...+++..+. +..+ ...++..+...+...|++..+...+...... +.. + .
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~ 132 (366)
T d1hz4a_ 53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 132 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence 3444445555555555555555544331 1000 1123334444555556666655555544321 111 1 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----
Q 008633 337 TNAYNAVISNYISVGDFDECMKYYKGMSSY----NCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR--GIVPS---- 406 (558)
Q Consensus 337 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~---- 406 (558)
...+..+...+...|+++.+...+...... +.......+..+...+...++..++...+.+.... .....
T Consensus 133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 212 (366)
T d1hz4a_ 133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 212 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence 123444556666666666666666655432 11122334444555566666666666666554331 11111
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHcCCChhHHHHHHHHHHH----CCCCCC-HH
Q 008633 407 TGTITSFLEPLCSYGPPHAAMMMYKKARKVGCK---LSLTAYKLLLRRLSGFGKCGMLLDLWHEMQE----SGYPSD-GE 478 (558)
Q Consensus 407 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~ 478 (558)
...+......+...|+.+.|...++...+.... .....+..+...+...|++++|...++.... .+..|+ ..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 292 (366)
T d1hz4a_ 213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence 122334444555667777777776665543211 2234455566777777888888777776652 233333 33
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhC----CCCC----CHHHHHHHHHHHHhcCCHHHHHH
Q 008633 479 IYEYVIAGLCNIGQLENAVLVMEESLRK----GFCP----SRLVYSKLSNKLLASNKLESAYN 533 (558)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p----~~~~~~~l~~~~~~~g~~~~A~~ 533 (558)
.+..+...|...|++++|.+.++++++. |... ....+..++..+...|+.+++.+
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 5667777788888888888888877642 2211 12344455566666666665544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=5.7e-09 Score=97.40 Aligned_cols=162 Identities=9% Similarity=0.023 Sum_probs=73.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 008633 236 LNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLG-QVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGR 314 (558)
Q Consensus 236 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 314 (558)
++.+...+.+.+..++|+++++++....|-+..+|+....++...| ++++|+..++...+.. +-+..+|..+...+.+
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~ 124 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEW 124 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHh
Confidence 3333334444444444444444444444444444444444444433 2455555555444432 1234444444444455
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC------H
Q 008633 315 AGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRK------V 388 (558)
Q Consensus 315 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~------~ 388 (558)
.|++++|++.++++.+.... +...|..+...+.+.|++++|++.++++.+.+ +-+...|+.+...+.+.+. +
T Consensus 125 l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~ 202 (315)
T d2h6fa1 125 LRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVL 202 (315)
T ss_dssp HTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred hccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhh
Confidence 55555555555555444322 44455555555555555555555555554432 2334444444443333332 3
Q ss_pred HHHHHHHHHHHH
Q 008633 389 ADALEVFEEMLD 400 (558)
Q Consensus 389 ~~A~~~~~~m~~ 400 (558)
++|++.+.+..+
T Consensus 203 ~~ai~~~~~al~ 214 (315)
T d2h6fa1 203 EREVQYTLEMIK 214 (315)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhHHHHHHHHH
Confidence 445555544444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=2.1e-08 Score=94.77 Aligned_cols=272 Identities=11% Similarity=-0.007 Sum_probs=197.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C----CHHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAEGFSPD----SLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCG-P----DTNA 339 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-p----~~~~ 339 (558)
........+...|++++|++++++..+.....+ ...+..+...+...|++++|...+++..+.... + ....
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 344456677889999999999999887532211 245777888999999999999999988654211 1 1345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHH
Q 008633 340 YNAVISNYISVGDFDECMKYYKGMSS----YNCEP---NMDTYTRLISGLLKSRKVADALEVFEEMLDRG----IVPSTG 408 (558)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~ 408 (558)
+..+...+...|++..|...+.+... .+... ....+..+...+...|+++.+...+....... ......
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 66777889999999999999987653 11111 12355667788889999999999999887642 222234
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC---CHHH
Q 008633 409 TITSFLEPLCSYGPPHAAMMMYKKARKV--GCKL----SLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPS---DGEI 479 (558)
Q Consensus 409 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~ 479 (558)
.+......+...++...+...+...... .... ....+..+...+...|++++|...++...+..... ....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 5555666677789999999888876542 1111 13345666777889999999999998877543222 2345
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 480 YEYVIAGLCNIGQLENAVLVMEESLR----KGFCPS-RLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
+..+...+...|++++|...+++++. .+..|+ ..++..+..+|.+.|++++|.+.+++..+
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66788899999999999999998864 244444 56788899999999999999999988754
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.12 E-value=1.9e-08 Score=93.65 Aligned_cols=186 Identities=15% Similarity=0.102 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008633 353 FDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKK 432 (558)
Q Consensus 353 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 432 (558)
.++|..+|++..+...+.+...|...+..+...|++++|..+|+++.+.........|...+..+.+.|+.+.|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34555555555543333344455555555555566666666665555443222233455555555555556666666665
Q ss_pred HHHcCCCCCHHHHHHHHHH-HHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC-CCC
Q 008633 433 ARKVGCKLSLTAYKLLLRR-LSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKG-FCP 510 (558)
Q Consensus 433 ~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 510 (558)
+.+.+ +.+...|...... +...|+.+.|..+|+.+.+. .+.+...|...+..+.+.|+++.|..+|+++++.. ..|
T Consensus 160 al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 55543 1222223222222 23345566666666666553 23345566666666666666666666666666542 222
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 511 S--RLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 511 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
+ ...|...+..-...|+.+.+.++.+++.+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 34555555555566666666666666544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.09 E-value=3e-08 Score=92.17 Aligned_cols=186 Identities=11% Similarity=0.021 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHH
Q 008633 213 QVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFN-VMTYNIVISGWSKLGQVVEMERVLK 291 (558)
Q Consensus 213 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 291 (558)
..++|..+|++..+...+.+...+...+..+.+.|+++.|..+|+++....+.+ ...|...+....+.|++++|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 345666677766654444455566666666666777777777777665543333 2356666666666677777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CC
Q 008633 292 EIVAEGFSPDSLTFSFLIEG-LGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYN-CE 369 (558)
Q Consensus 292 ~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~ 369 (558)
++.+.+.. +...|...... +...|+.+.|..+|+.+.+.. +.+...|...++.+.+.|+++.|..+|++..+.. ..
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 66655322 22233222222 233466666666666666552 2255666666666666666666666666665532 12
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 370 P--NMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 370 p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
| ....|...+.--...|+.+.+.++++++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 133555555555566666666666665544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.01 E-value=7.3e-10 Score=104.83 Aligned_cols=224 Identities=8% Similarity=-0.025 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHH
Q 008633 318 IDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVG--DFDECMKYYKGMSSYNCEPNMDTYTR-LISGLLKSRKVADALEV 394 (558)
Q Consensus 318 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~ 394 (558)
+++|+..++...+.... +...|..+..++...+ ++++|...+.++.+.. +++...+.. ....+...+.+++|+..
T Consensus 89 ~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~ 166 (334)
T d1dcea1 89 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (334)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHH
Confidence 44455555555444322 4444444444444433 2455555555554432 223333322 22334444555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCC
Q 008633 395 FEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYP 474 (558)
Q Consensus 395 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 474 (558)
++.+...+ +-+...|..+...+...|++++|...+....+.. | ....+...+...+..+++...+....... +
T Consensus 167 ~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~---~~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~ 239 (334)
T d1dcea1 167 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--L---KELELVQNAFFTDPNDQSAWFYHRWLLGR-A 239 (334)
T ss_dssp HHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--H---HHHHHHHHHHHHCSSCSHHHHHHHHHHSC-C
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--H---HHHHHHHHHHHhcchhHHHHHHHHHHHhC-c
Confidence 55554432 2233444444444555555544433332222110 0 00111222333444555555555555432 3
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhhhcc
Q 008633 475 SDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCP-SRLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRLWRS 553 (558)
Q Consensus 475 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 553 (558)
++...+..++..+...|+.++|+..+.+..... | +..++..++.+|...|+.++|.+.+++..+ +.|+...+|+.
T Consensus 240 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~~ 315 (334)
T d1dcea1 240 EPLFRCELSVEKSTVLQSELESCKELQELEPEN--KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDD 315 (334)
T ss_dssp CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHHH
T ss_pred chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHHHH
Confidence 334445555555666666666666666655432 3 245566666666666777777777766653 45566666654
Q ss_pred c
Q 008633 554 K 554 (558)
Q Consensus 554 ~ 554 (558)
.
T Consensus 316 L 316 (334)
T d1dcea1 316 L 316 (334)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.99 E-value=2.3e-09 Score=101.33 Aligned_cols=263 Identities=10% Similarity=-0.046 Sum_probs=167.9
Q ss_pred HhHHHHHHHHhhcCCCCChhhHHHHHHH----------HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--
Q 008633 249 VGAASSLFNSMKGKVLFNVMTYNIVISG----------WSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAG-- 316 (558)
Q Consensus 249 ~~~A~~~~~~m~~~~~~~~~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-- 316 (558)
.++|++++++.....|-+...|+..-.. +...|.+++|+.+++...+.. +-+...|..+..++...+
T Consensus 45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~ 123 (334)
T d1dcea1 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (334)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccc
Confidence 3555555555544444344444433222 223345677888888777653 235556666666665554
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 317 RIDDAIEVFDTMKEKGCGPDTNAYN-AVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVF 395 (558)
Q Consensus 317 ~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 395 (558)
++++|...++.+.+.... +...+. .....+...+..++|+..++.+.+.+ +-+...|..+...+.+.|++++|...+
T Consensus 124 ~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~ 201 (334)
T d1dcea1 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (334)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 477888888887776433 444443 44466777788888888888887765 456777888888888888887776555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCC
Q 008633 396 EEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPS 475 (558)
Q Consensus 396 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 475 (558)
....+. .|.. ..+...+...+..+++...+....... +++...+..+...+...|+.++|...+.+..+.. +-
T Consensus 202 ~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~ 274 (334)
T d1dcea1 202 RLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KW 274 (334)
T ss_dssp SSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HH
T ss_pred HHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-ch
Confidence 433321 1111 122233455567777777777776654 3344445556666777788889998888887653 33
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 008633 476 DGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS-RLVYSKLSNKLL 523 (558)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 523 (558)
+..+|..+...+...|+.++|++.++++++. .|+ ...|..|...+.
T Consensus 275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 275 CLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHh
Confidence 4567788888899999999999999999876 465 455565655554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.95 E-value=2.2e-08 Score=90.44 Aligned_cols=198 Identities=9% Similarity=-0.048 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 008633 304 TFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLL 383 (558)
Q Consensus 304 t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 383 (558)
+|..+...|.+.|++++|.+.|++..+.... +..+|..+..+|.+.|++++|++.|+++.+.. +-+..+|..+..+|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 3444455555556666666666655554333 45556666666666666666666666655542 223445555555666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC----hh
Q 008633 384 KSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGK----CG 459 (558)
Q Consensus 384 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----~~ 459 (558)
..|++++|...|++..+.. +.+......+..++...+..+.+..+..........+. .++ ++..+..... .+
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW--GWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST--HHH-HHHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh--hhh-HHHHHHHHHHHHHHHH
Confidence 6666666666666655542 11222222222223333333333333333333221111 111 1111111111 11
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC
Q 008633 460 MLLDLWHEMQESGYPS-DGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPS 511 (558)
Q Consensus 460 ~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 511 (558)
.+...+...... .| ...+|..+...+...|++++|...|++++.. .|+
T Consensus 193 ~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~ 241 (259)
T d1xnfa_ 193 RLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH 241 (259)
T ss_dssp HHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred HHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCC
Confidence 111111111110 11 1235666777888888888888888888865 454
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=3.6e-08 Score=88.93 Aligned_cols=194 Identities=12% Similarity=-0.040 Sum_probs=102.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008633 269 TYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYI 348 (558)
Q Consensus 269 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 348 (558)
+|..+...|.+.|++++|...|++..+.. +-+..+|..+..++.+.|++++|.+.|+++.+.... +..++..+..+|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 45555666666666666666666666542 224556666666666666666666666666665433 4445666666666
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 008633 349 SVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMM 428 (558)
Q Consensus 349 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 428 (558)
..|++++|.+.|++..+.. +.+......+..++.+.+..+.+..+..........+.. ++ ++..+ .+......
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~--~~~~~~~~- 189 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG--WN-IVEFY--LGNISEQT- 189 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH--HH-HHHHH--TTSSCHHH-
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhh--hh-HHHHH--HHHHHHHH-
Confidence 6677777777666666543 233333333344444445444444444444443221111 11 11111 11111111
Q ss_pred HHHHHHHcCC-----CC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 008633 429 MYKKARKVGC-----KL-SLTAYKLLLRRLSGFGKCGMLLDLWHEMQES 471 (558)
Q Consensus 429 ~~~~~~~~~~-----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 471 (558)
.+..+..... .| ...+|..+...|...|++++|.+.|+.....
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 190 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 1111111100 01 1245666778888889999999999888865
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.45 E-value=5.4e-06 Score=75.68 Aligned_cols=61 Identities=15% Similarity=0.077 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKE----GVNP-DLETLSIVMDSFIRAGQVYKAIQMLGRLE 225 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~----g~~~-~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 225 (558)
.|......|...|++++|.+.|.+..+. +-.+ -..+|..+...|.+.|++++|++.+++..
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~ 104 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhh
Confidence 3566666777777777777777766542 1111 12356666666666777777766666544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=7.8e-06 Score=69.32 Aligned_cols=122 Identities=11% Similarity=-0.070 Sum_probs=63.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008633 276 GWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDE 355 (558)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 355 (558)
.+...|++++|++.|.++ ..|+..+|..+..++...|++++|.+.|++.++.... +...|..+..+|.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHH
Confidence 344455555555555432 1344445555555555555555555555555554333 44555555555555555555
Q ss_pred HHHHHHHhhhCC------------C--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008633 356 CMKYYKGMSSYN------------C--EP-NMDTYTRLISGLLKSRKVADALEVFEEMLDRG 402 (558)
Q Consensus 356 A~~~~~~m~~~~------------~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 402 (558)
|++.|++..... . .. ...++..+..++.+.|++++|.+.+....+..
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 555555543311 0 00 02334455556666777777777666665543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=1.1e-05 Score=68.32 Aligned_cols=120 Identities=8% Similarity=-0.048 Sum_probs=56.4
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 008633 347 YISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAA 426 (558)
Q Consensus 347 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a 426 (558)
+...|++++|++.|+++. +|+..+|..+..+|...|++++|++.|++.++.+ +-+...|..+..++.+.|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHH
Confidence 344445555554444432 3344444444444555555555555555444432 12233444444444444555555
Q ss_pred HHHHHHHHHcCC--------------CC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHC
Q 008633 427 MMMYKKARKVGC--------------KL-SLTAYKLLLRRLSGFGKCGMLLDLWHEMQES 471 (558)
Q Consensus 427 ~~~~~~~~~~~~--------------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 471 (558)
+..|++...... .. ...++..+..++.+.|++++|.+.+....+.
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 444444433110 00 0233444555666667777777766666654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=2.6e-06 Score=65.76 Aligned_cols=98 Identities=15% Similarity=0.101 Sum_probs=57.8
Q ss_pred HHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 008633 450 RRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLE 529 (558)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 529 (558)
..+...|++++|+..|++..+.. +-+...|..+..++.+.|++++|+..++++++.+ +.+...|..+..++...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence 34555666666666666666543 3455566666666666666666666666666543 234566666666666666666
Q ss_pred HHHHHHHHHHHhcCCchhhhhh
Q 008633 530 SAYNLFRKIKIARQNDYARRLW 551 (558)
Q Consensus 530 ~A~~~~~~m~~~~~~~~~~~~~ 551 (558)
+|...+++..+ ..|+...++
T Consensus 89 ~A~~~~~~a~~--~~p~~~~~~ 108 (117)
T d1elwa_ 89 EAKRTYEEGLK--HEANNPQLK 108 (117)
T ss_dssp HHHHHHHHHHT--TCTTCHHHH
T ss_pred HHHHHHHHHHH--hCCCCHHHH
Confidence 66666666663 344444333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.38 E-value=5.9e-06 Score=75.41 Aligned_cols=196 Identities=12% Similarity=0.038 Sum_probs=112.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHH
Q 008633 344 ISNYISVGDFDECMKYYKGMSSY----NCEP-NMDTYTRLISGLLKSRKVADALEVFEEMLDR----GI-VPSTGTITSF 413 (558)
Q Consensus 344 i~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~l 413 (558)
...|...|++++|.+.|.+..+. +-.+ -..+|..+..+|.+.|++++|.+.+++..+. |. .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 45566667777777777665431 1111 1345666677777777777777777665431 11 0112334444
Q ss_pred HHHHHh-cCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-----H-HHHH
Q 008633 414 LEPLCS-YGPPHAAMMMYKKARKV----GCKL-SLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSD-----G-EIYE 481 (558)
Q Consensus 414 l~~~~~-~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~-~~~~ 481 (558)
...|.. .|+++.|+..++++.+. +..+ ...++..+...+...|++++|+..|+++........ . ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 444533 57788888777766542 1111 134566777888888888888888888775421111 1 1233
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 008633 482 YVIAGLCNIGQLENAVLVMEESLRKGFC-PS---RLVYSKLSNKLLA--SNKLESAYNLFRKIK 539 (558)
Q Consensus 482 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~---~~~~~~l~~~~~~--~g~~~~A~~~~~~m~ 539 (558)
..+..+...|+++.|...++++.+.... ++ ......++.++.. .+.+++|...|+++.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 4455566778888888888887754211 11 2344556666554 345777777765543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.37 E-value=0.00081 Score=61.35 Aligned_cols=131 Identities=10% Similarity=0.015 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHh
Q 008633 200 TLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSK 279 (558)
Q Consensus 200 t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~ 279 (558)
-...+...|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+...+.+
T Consensus 16 d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~-----~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 16 HIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFACVD 81 (336)
T ss_dssp -------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT-----CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC-----CHHHHHHHHHHHHh
Confidence 333444445555555555555543322 3344445555555555555544332 34455555555554
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 280 LGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV 350 (558)
Q Consensus 280 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 350 (558)
.....-| .+...+...+......++..|-..|.+++...+++..... -..+...++-++..|++.
T Consensus 82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 4443322 1112222234444445555555555555555555554332 122444555555555554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.35 E-value=0.0004 Score=61.74 Aligned_cols=81 Identities=9% Similarity=-0.080 Sum_probs=41.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCH
Q 008633 457 KCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCN----IGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLA----SNKL 528 (558)
Q Consensus 457 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~ 528 (558)
+...+...++...+.| +......+...+.. ..+.++|+.+|++..+.| ++..+..|...|.+ ..+.
T Consensus 161 ~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~ 234 (265)
T d1ouva_ 161 DLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNE 234 (265)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCS
T ss_pred ccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCH
Confidence 3444445555554443 33344444444433 345666666666666654 24444555555553 2256
Q ss_pred HHHHHHHHHHHHhcC
Q 008633 529 ESAYNLFRKIKIARQ 543 (558)
Q Consensus 529 ~~A~~~~~~m~~~~~ 543 (558)
++|.+.|++.-+.|.
T Consensus 235 ~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 235 KQAIENFKKGCKLGA 249 (265)
T ss_dssp TTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCcC
Confidence 666666666655544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.30 E-value=2.2e-06 Score=73.42 Aligned_cols=99 Identities=11% Similarity=-0.014 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008633 405 PSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVI 484 (558)
Q Consensus 405 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 484 (558)
|+...+......+.+.|++++|+..|.++.+.. +.+...|..+..+|.+.|++++|+..|+...+.. +-+...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 455555566666677777777777777666654 4456666667777777777777777777766542 22455666677
Q ss_pred HHHHhcCCHhHHHHHHHHHHh
Q 008633 485 AGLCNIGQLENAVLVMEESLR 505 (558)
Q Consensus 485 ~~~~~~g~~~~A~~~~~~m~~ 505 (558)
.+|...|++++|+..|+++++
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777776654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=1.8e-05 Score=60.90 Aligned_cols=49 Identities=12% Similarity=0.007 Sum_probs=18.4
Q ss_pred cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 246 RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIV 294 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (558)
.|++++|+..|++.....|.+...|..+..+|.+.|++++|+..+.+..
T Consensus 16 ~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 64 (117)
T d1elwa_ 16 VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 64 (117)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHH
Confidence 3333333333333333333333333333333333333333333333333
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=2.2e-05 Score=64.19 Aligned_cols=88 Identities=7% Similarity=-0.058 Sum_probs=39.2
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAI 322 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 322 (558)
|.+.|++++|...|++.....|.+...|..+..+|...|++++|...|++.++.. +-+...|..+..++...|++++|.
T Consensus 20 ~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~eA~ 98 (159)
T d1a17a_ 20 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAAL 98 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 3444444444444444433333344444444444444444444444444444432 113334444444444444444444
Q ss_pred HHHHHHHHC
Q 008633 323 EVFDTMKEK 331 (558)
Q Consensus 323 ~~~~~m~~~ 331 (558)
+.+++..+.
T Consensus 99 ~~~~~a~~~ 107 (159)
T d1a17a_ 99 RDYETVVKV 107 (159)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 444444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.23 E-value=1.1e-05 Score=68.93 Aligned_cols=99 Identities=11% Similarity=-0.058 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHH
Q 008633 196 PDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVIS 275 (558)
Q Consensus 196 ~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~ 275 (558)
|+...+......+.+.|++++|++.|.++.+.. +.+...|+.+..+|.+.|++++|+..|+....-.|-+..+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 455556666666667777777777776666543 2355666666666666777777777766666555556666666777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 008633 276 GWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 276 ~~~~~g~~~~A~~~~~~m~~ 295 (558)
+|.+.|++++|+..|++..+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 77777777777776666554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.23 E-value=0.0014 Score=57.90 Aligned_cols=224 Identities=12% Similarity=0.008 Sum_probs=123.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008633 267 VMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGR----AGRIDDAIEVFDTMKEKGCGPDTNAYNA 342 (558)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 342 (558)
+..+..|...+.+.+++++|+++|++..+.| +...+..|...|.. ..+...|...+......+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 3344555555556666666666666665554 33444444444443 445666666666655554 2233333
Q ss_pred HHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008633 343 VISNYIS----VGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLK----SRKVADALEVFEEMLDRGIVPSTGTITSFL 414 (558)
Q Consensus 343 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 414 (558)
+...+.. ..+.+.|...++...+.|. ......+...+.. ......+...+...... .+...+..+.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhh
Confidence 3333332 3456666666666665542 1222222222222 33455556665555543 2344444455
Q ss_pred HHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008633 415 EPLCS----YGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSG----FGKCGMLLDLWHEMQESGYPSDGEIYEYVIAG 486 (558)
Q Consensus 415 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 486 (558)
..+.. ..+...+...++...+.| +......+...|.. ..+.++|+..|....+.| +...+..|...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~ 223 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 223 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHH
Confidence 44443 345556666666666554 34444444444443 467888888888888876 45566667776
Q ss_pred HHh----cCCHhHHHHHHHHHHhCCC
Q 008633 487 LCN----IGQLENAVLVMEESLRKGF 508 (558)
Q Consensus 487 ~~~----~g~~~~A~~~~~~m~~~g~ 508 (558)
|.+ ..+.++|.++|+++.+.|.
T Consensus 224 y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 224 QYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 664 3478889999988887763
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=2.3e-05 Score=64.03 Aligned_cols=117 Identities=14% Similarity=0.022 Sum_probs=87.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 414 LEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQL 493 (558)
Q Consensus 414 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 493 (558)
...|.+.|++++|+..|+++.+.. +-+...|..+..+|...|++++|+..|+...+.. +-+...|..++.++...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence 345778888888888888888865 4577888888888999999999999999888764 44667888899999999999
Q ss_pred hHHHHHHHHHHhCCCCCC-HHHHHHHHHH--HHhcCCHHHHHHH
Q 008633 494 ENAVLVMEESLRKGFCPS-RLVYSKLSNK--LLASNKLESAYNL 534 (558)
Q Consensus 494 ~~A~~~~~~m~~~g~~p~-~~~~~~l~~~--~~~~g~~~~A~~~ 534 (558)
++|...+++..... |+ ...+..+..+ ....+.+++|...
T Consensus 95 ~eA~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 95 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999988763 44 4544444433 2334445555543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.07 E-value=1.9e-05 Score=60.20 Aligned_cols=89 Identities=8% Similarity=-0.021 Sum_probs=68.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008633 448 LLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNK 527 (558)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 527 (558)
+...+.+.|++++|+..+++..... +-+...|..+..++.+.|++++|+..++++++.. +-+...+..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 3445677888888888888887654 3367788888888888888888888888888753 2347788888888888888
Q ss_pred HHHHHHHHHHH
Q 008633 528 LESAYNLFRKI 538 (558)
Q Consensus 528 ~~~A~~~~~~m 538 (558)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888775
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.02 E-value=2.2e-05 Score=59.77 Aligned_cols=85 Identities=8% Similarity=-0.036 Sum_probs=39.1
Q ss_pred HHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 008633 207 SFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEM 286 (558)
Q Consensus 207 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A 286 (558)
.+.+.|++++|+..|+++.+... -+..+|..+..++.+.|++++|+..|++.....|.+..+|..+...|...|++++|
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A 103 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 103 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhccccc-ccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHH
Confidence 33444444444444444444321 13444444444444444444444444444433344444455555555555555555
Q ss_pred HHHHHH
Q 008633 287 ERVLKE 292 (558)
Q Consensus 287 ~~~~~~ 292 (558)
++.+++
T Consensus 104 ~~~l~~ 109 (112)
T d1hxia_ 104 LASLRA 109 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=9.2e-06 Score=62.90 Aligned_cols=94 Identities=15% Similarity=0.106 Sum_probs=52.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 008633 412 SFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKC---GMLLDLWHEMQESGYPSD-GEIYEYVIAGL 487 (558)
Q Consensus 412 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~-~~~~~~li~~~ 487 (558)
.++..+...+++++|.+.|++....+ +.+..++..+..++.+.++. ++|+.+++++...+..|+ ..+|..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 34555555666666666666666644 34555555566666554333 346666666554432222 12455556666
Q ss_pred HhcCCHhHHHHHHHHHHhC
Q 008633 488 CNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~ 506 (558)
.+.|++++|++.|+++++.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 6666666666666666653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=0.0002 Score=58.89 Aligned_cols=132 Identities=9% Similarity=-0.015 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008633 373 DTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRL 452 (558)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 452 (558)
..+......+.+.|++++|+..|.+.+..- |.. .+....-......+ ...+|+.+..+|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~------------~~~~~~~~~~~~~~-------~~~~~~nla~~y 72 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYE------------SSFSNEEAQKAQAL-------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTC------------CCCCSHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhc------------cccchHHHhhhchh-------HHHHHHHHHHHH
Confidence 344455667788888888888888776531 100 00001111111111 124577788889
Q ss_pred HcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCH
Q 008633 453 SGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCP-SRLVYSKLSNKLLASNKL 528 (558)
Q Consensus 453 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~ 528 (558)
.+.|++++|+..++..++.. +.+...|..+..++...|++++|+..|+++++. .| +..+...+..+..+.+..
T Consensus 73 ~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~~~~~~~ 146 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQ 146 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999864 557889999999999999999999999999976 35 466666665555444433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.89 E-value=4.4e-05 Score=58.92 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=61.8
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 008633 447 LLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQ---LENAVLVMEESLRKGFCPS-RLVYSKLSNKL 522 (558)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~ 522 (558)
.+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++ +++|+.++++++..+..|+ ..++..|+.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45556666777777777777777654 4566677777777766444 3457777777765542232 23566777777
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 008633 523 LASNKLESAYNLFRKIKI 540 (558)
Q Consensus 523 ~~~g~~~~A~~~~~~m~~ 540 (558)
.+.|++++|++.|+++.+
T Consensus 83 ~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 777777777777777775
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=0.00044 Score=56.75 Aligned_cols=60 Identities=12% Similarity=0.081 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 340 YNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLD 400 (558)
Q Consensus 340 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 400 (558)
|+.+..+|.+.|++++|+..++..++.. +.+..+|..+..+|...|++++|+..|++..+
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3334444444444444444444444432 22344444444444444444444444444444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=0.00014 Score=56.60 Aligned_cols=90 Identities=13% Similarity=0.160 Sum_probs=41.6
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-CCC-----HHHHHHHHHHH
Q 008633 449 LRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGF-CPS-----RLVYSKLSNKL 522 (558)
Q Consensus 449 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-----~~~~~~l~~~~ 522 (558)
...+...|++++|+..|.+.++.+ +.+...|..+..+|.+.|++++|+..++++++... .+. ..+|..+...+
T Consensus 11 G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~ 89 (128)
T d1elra_ 11 GNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555554432 23444455555555555555555555555443210 000 13444444555
Q ss_pred HhcCCHHHHHHHHHHHH
Q 008633 523 LASNKLESAYNLFRKIK 539 (558)
Q Consensus 523 ~~~g~~~~A~~~~~~m~ 539 (558)
...+++++|.+.+++..
T Consensus 90 ~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 90 FKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 55555555555554443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=1.6e-05 Score=78.56 Aligned_cols=226 Identities=12% Similarity=0.000 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 216 KAIQMLGRLEDFGLKFD-AESLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIV 294 (558)
Q Consensus 216 ~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 294 (558)
+|.+.|++..+. +|+ ...+..+..++...+++++| |+++....+.....++.....+ ...+..+.+.++...
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhc
Confidence 677888887753 333 34555666777777777765 5554322110111222211111 122455666666666
Q ss_pred HcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 008633 295 AEGFSPDSLTFSFLIEGL--GRAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNM 372 (558)
Q Consensus 295 ~~g~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 372 (558)
+....++..-....+..+ ...+.++.+...+....+.. .++...+..+...+.+.|+.++|...+....... ..
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~ 152 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQ 152 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---HH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HH
Confidence 543333332222222111 12334444444443333222 2245566777777888888888887777665321 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008633 373 DTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRL 452 (558)
Q Consensus 373 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 452 (558)
.++..+...+...|++++|...|++..+.. +-+...|+.+...+...|+..+|...|.+..... +|...++..|...+
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 456667777888888888888888887753 2334677778877888888888888888887755 56677777776655
Q ss_pred Hc
Q 008633 453 SG 454 (558)
Q Consensus 453 ~~ 454 (558)
.+
T Consensus 231 ~~ 232 (497)
T d1ya0a1 231 SK 232 (497)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.66 E-value=0.0015 Score=53.32 Aligned_cols=143 Identities=8% Similarity=-0.049 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 008633 372 MDTYTRLISGLLKSRKVADALEVFEEMLDR---GIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLL 448 (558)
Q Consensus 372 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 448 (558)
...+.-....+.+.|++++|...|.+.... ....+.. .......+ ....|..+
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~-----------------~~~~~~~~-------~~~~~~Nl 70 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK-----------------ESKASESF-------LLAAFLNL 70 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH-----------------HHHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh-----------------hhhhcchh-------HHHHHHhH
Confidence 344555666777778888887777765431 0000000 00000100 13456667
Q ss_pred HHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 008633 449 LRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKL 528 (558)
Q Consensus 449 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 528 (558)
..+|.+.|++++|+..++...+.. +.+...|..+..++...|++++|...|+++++.. +.+..+...+.....+.+..
T Consensus 71 a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~~ 148 (168)
T d1kt1a1 71 AMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAKEH 148 (168)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhH
Confidence 788999999999999999998864 6678899999999999999999999999999764 23456666665555555444
Q ss_pred -HHHHHHHHHHHH
Q 008633 529 -ESAYNLFRKIKI 540 (558)
Q Consensus 529 -~~A~~~~~~m~~ 540 (558)
+...+++.+|-+
T Consensus 149 ~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 149 NERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 334555555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.64 E-value=0.00044 Score=56.72 Aligned_cols=80 Identities=11% Similarity=0.036 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008633 442 LTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNK 521 (558)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 521 (558)
...|..+..++.+.|++++|+..+....+.. +.+...|..+..++...|++++|+..|+++++.. +.+..+...+..+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~ 154 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4566777788888999999999999988765 5577788889999999999999999999998763 2345555555544
Q ss_pred HH
Q 008633 522 LL 523 (558)
Q Consensus 522 ~~ 523 (558)
..
T Consensus 155 ~~ 156 (169)
T d1ihga1 155 KQ 156 (169)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.62 E-value=0.00056 Score=56.51 Aligned_cols=59 Identities=3% Similarity=-0.037 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 235 SLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEI 293 (558)
Q Consensus 235 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 293 (558)
.+..+...+.+.|++++|...++++....|-+...|..++.++.+.|+..+|++.|+++
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 33444444555555555555555554444445555555555555555555555555544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.62 E-value=0.00087 Score=53.77 Aligned_cols=62 Identities=10% Similarity=0.046 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008633 339 AYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR 401 (558)
Q Consensus 339 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 401 (558)
+|+.+..+|.+.|++++|++.++...+.+ +.+..+|..+..++...|++++|...|++..+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45556666666666666666666665543 345566666666666666666666666666553
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.57 E-value=0.00082 Score=53.94 Aligned_cols=109 Identities=8% Similarity=-0.103 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 165 SYNVIVKALGRRKFFDFMCNVLSDMAKEGV----NPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVL 240 (558)
Q Consensus 165 ~~~~li~~~~~~~~~~~a~~l~~~m~~~g~----~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 240 (558)
.+......+.+.|++.+|+..|.+....-. .++...... .. .....+|+.+.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~--------------------~~----~~~~~~~~Nla 74 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK--------------------KK----NIEISCNLNLA 74 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHH--------------------HH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHh--------------------hh----hHHHHHHhhHH
Confidence 455556677788888888888888765311 111111100 00 00123566777
Q ss_pred HHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008633 241 WCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEG 297 (558)
Q Consensus 241 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 297 (558)
.+|.+.|++++|++.++......|.++.+|..+..++...|++++|...|++..+..
T Consensus 75 ~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 75 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 788888888888888887776667778888888888888888888888888887753
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.56 E-value=0.00084 Score=54.92 Aligned_cols=62 Identities=13% Similarity=-0.038 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008633 235 SLNVVLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAE 296 (558)
Q Consensus 235 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 296 (558)
.+..+..++.+.|++++|+..+++.....|.+..+|..+..++.+.|++++|+..|++..+.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34444555555555555555555555444445555555555555555555555555555543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=2.1e-05 Score=77.59 Aligned_cols=225 Identities=9% Similarity=-0.020 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHH
Q 008633 181 FMCNVLSDMAKEGVNPD-LETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDA-ESLNVVLWCLCQRLHVGAASSLFNS 258 (558)
Q Consensus 181 ~a~~l~~~m~~~g~~~~-~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~~~~~~A~~~~~~ 258 (558)
+|.+.|++..+. .|| ...+..+...+...|++++| |+++.... |+. ..++..- .+- ...+..+.+.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~-~Lw-~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQ-DLW-NHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHH-HHH-HHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHH-HHH-HHHHHHHHHHHHH
Confidence 677888887764 343 34666677788888888776 67766532 221 1121111 111 1123456666666
Q ss_pred hhcC-CCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008633 259 MKGK-VLFNVMTYNIVISG--WSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMKEKGCGP 335 (558)
Q Consensus 259 m~~~-~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~p 335 (558)
.... ..++..-....... ....+.++.|+..+....+.. .++...+..+...+.+.|+.++|...+.......+
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-- 151 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-- 151 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHH--
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--
Confidence 5432 12222222222212 222344455544444333221 23455677778888899999999988877655421
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008633 336 DTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLE 415 (558)
Q Consensus 336 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 415 (558)
..++..+...+...|++++|...|++..+.. +-+...|+.|...+...|+..+|...|.+..... .|-..++..|..
T Consensus 152 -~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~ 228 (497)
T d1ya0a1 152 -QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQK 228 (497)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 3567788999999999999999999998864 4566899999999999999999999999998865 567777777777
Q ss_pred HHHhc
Q 008633 416 PLCSY 420 (558)
Q Consensus 416 ~~~~~ 420 (558)
.+.+.
T Consensus 229 ~~~~~ 233 (497)
T d1ya0a1 229 ALSKA 233 (497)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=0.00074 Score=52.28 Aligned_cols=51 Identities=8% Similarity=0.020 Sum_probs=20.2
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008633 243 LCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEI 293 (558)
Q Consensus 243 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 293 (558)
+.+.|++++|+..|++.....|.+..+|..+..+|.+.|++++|+..++++
T Consensus 14 ~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (128)
T d1elra_ 14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHH
Confidence 333333444443333333333333344444444444444444444444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.47 E-value=0.035 Score=50.12 Aligned_cols=257 Identities=9% Similarity=0.031 Sum_probs=133.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008633 166 YNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDAESLNVVLWCLCQ 245 (558)
Q Consensus 166 ~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 245 (558)
|..++..+.+.+++..|.+++... -+..+|..+...|.+......| .+...+...+......++..|-.
T Consensus 43 ~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~ 111 (336)
T d1b89a_ 43 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQD 111 (336)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHH
Confidence 667777777788888777766543 2566777777777776665543 22223333455555667777777
Q ss_pred cCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008633 246 RLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVF 325 (558)
Q Consensus 246 ~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 325 (558)
.|.+++...+++........+...++.++..|++.+. ++ +.+.+...+..-|. ..++..|-+.+-
T Consensus 112 ~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~k---l~e~l~~~s~~y~~---~k~~~~c~~~~l-------- 176 (336)
T d1b89a_ 112 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QK---MREHLELFWSRVNI---PKVLRAAEQAHL-------- 176 (336)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HH---HHHHHHHHSTTSCH---HHHHHHHHTTTC--------
T ss_pred cCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-HH---HHHHHHhccccCCH---HHHHHHHHHcCC--------
Confidence 7777777777776654445566667777777776542 22 22222221111111 112223322222
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 008633 326 DTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVP 405 (558)
Q Consensus 326 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 405 (558)
|.-++..|.+.|++++|..+.-.- .++..-....+..+.+..+.+...++.....+. .|
T Consensus 177 --------------~~elv~Ly~~~~~~~~A~~~~i~~-----~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p 235 (336)
T d1b89a_ 177 --------------WAELVFLYDKYEEYDNAIITMMNH-----PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP 235 (336)
T ss_dssp --------------HHHHHHHHHHTTCHHHHHHHHHHS-----TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG
T ss_pred --------------hHHHHHHHHhcCCHHHHHHHHHHc-----chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CH
Confidence 233445555555555555443321 223333344455555555555555444444332 22
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008633 406 STGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIA 485 (558)
Q Consensus 406 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 485 (558)
...+.++......-+..+..+. +.+.+++......++...+.+ +..+.+++..
T Consensus 236 --~~i~~lL~~v~~~~d~~r~V~~----------------------~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~ 288 (336)
T d1b89a_ 236 --LLLNDLLMVLSPRLDHTRAVNY----------------------FSKVKQLPLVKPYLRSVQNHN---NKSVNESLNN 288 (336)
T ss_dssp --GGHHHHHHHHGGGCCHHHHHHH----------------------HHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHH
T ss_pred --HHHHHHHHHhccCCCHHHHHHH----------------------HHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHH
Confidence 2233444433333333333322 233444555555565555444 3456777777
Q ss_pred HHHhcCCHhHH
Q 008633 486 GLCNIGQLENA 496 (558)
Q Consensus 486 ~~~~~g~~~~A 496 (558)
.|...++++.-
T Consensus 289 lyie~~d~~~l 299 (336)
T d1b89a_ 289 LFITEEDYQAL 299 (336)
T ss_dssp HHHHTTCHHHH
T ss_pred HHhCcchhHHH
Confidence 77777775443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.46 E-value=0.0013 Score=53.71 Aligned_cols=57 Identities=7% Similarity=-0.041 Sum_probs=25.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 239 VLWCLCQRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 239 ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
+..+|.+.|++++|+..++......|.+..+|..+..++...|++++|...|.+..+
T Consensus 70 la~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 70 LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444444444444444333334444444444444444444444444444443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.40 E-value=6.1e-05 Score=66.91 Aligned_cols=131 Identities=11% Similarity=-0.113 Sum_probs=79.2
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHH
Q 008633 418 CSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSD-GEIYEYVIAGLCNIGQLENA 496 (558)
Q Consensus 418 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A 496 (558)
.+.|++++|+..+++.++.. +-+...+..+...|+..|++++|...++...+. .|+ ...+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHH
Confidence 45678888888888877764 556777888888888888888888888887765 333 33444444444333333332
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCchhhhhhcc
Q 008633 497 VLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIARQNDYARRLWRS 553 (558)
Q Consensus 497 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 553 (558)
..-.......+-.++...+......+.+.|+.++|.+++++..+. .|+....|..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~--~p~~~~~~~~ 138 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL--RQEKGFLAND 138 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCCEEETT
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCCCccccc
Confidence 221111111111122344445566778889999999999888753 3454445543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.39 E-value=0.0024 Score=52.49 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 008633 267 VMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFDTMK-----EKGCGPDTNA 339 (558)
Q Consensus 267 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~ 339 (558)
...+..+...+.+.|++++|+..++++.+.. +-+...|..++.++.+.|+.++|++.|+++. +.|+.|...+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 3455666666666677777776666666643 3355666666666666666666666666653 2466665543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.29 E-value=0.00028 Score=56.16 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008633 319 DDAIEVFDTMKEKGCGPDTNAYNAVISNYISV 350 (558)
Q Consensus 319 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 350 (558)
++|.+.|++..+..+. +..+|..+..+|...
T Consensus 58 ~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 58 QEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcch-hhHHHhhHHHHHHHc
Confidence 4455555555544332 444555555555443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.29 E-value=0.00016 Score=64.00 Aligned_cols=50 Identities=14% Similarity=0.066 Sum_probs=22.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 008633 176 RKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLED 226 (558)
Q Consensus 176 ~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~ 226 (558)
.|++++|+..+++..+.. +-|...+..+...++..|++++|.+.++...+
T Consensus 9 ~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444444444432 22344444444444444444444444444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.24 E-value=0.00093 Score=53.01 Aligned_cols=114 Identities=11% Similarity=0.034 Sum_probs=68.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 008633 314 RAGRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYISV----------GDFDECMKYYKGMSSYNCEPNMDTYTRLISGLL 383 (558)
Q Consensus 314 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 383 (558)
+.+.+++|.+.++...+..+. +..++..+..+|... +.+++|++.|++..+.+ +.+..+|..+..+|.
T Consensus 9 r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHH
Confidence 444566666666666665433 555665565555432 34578888888888764 556778888888776
Q ss_pred hcCC-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 008633 384 KSRK-----------VADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVG 437 (558)
Q Consensus 384 ~~g~-----------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 437 (558)
..|+ +++|.+.|++..+. .|+...|..-+..+ ..|.+++.++.+.|
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 6543 46666666666653 45555544443322 34555555555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.85 E-value=0.011 Score=47.20 Aligned_cols=91 Identities=13% Similarity=0.057 Sum_probs=60.0
Q ss_pred HHHHcCCChhHHHHHHHHHHHC--CCCC---------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-----CCCCC--
Q 008633 450 RRLSGFGKCGMLLDLWHEMQES--GYPS---------DGEIYEYVIAGLCNIGQLENAVLVMEESLRK-----GFCPS-- 511 (558)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~m~~~--~~~p---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-- 511 (558)
..+...|++++|+..|++..+. ..+. ....|+.+..+|.+.|++++|...+++.++. ...++
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3344556777777777666541 1110 1346777888888888888888888887642 11222
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 512 ---RLVYSKLSNKLLASNKLESAYNLFRKIKI 540 (558)
Q Consensus 512 ---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 540 (558)
...+..+..+|...|++++|.+.|++..+
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23566778888888888888888888664
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.73 E-value=0.015 Score=46.29 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 375 YTRLISGLLKSRKVADALEVFEEML 399 (558)
Q Consensus 375 ~~~li~~~~~~g~~~~A~~~~~~m~ 399 (558)
|..+..+|...|++++|+..|++..
T Consensus 103 ~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 103 VYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.0035 Score=45.29 Aligned_cols=62 Identities=13% Similarity=0.016 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 445 YKLLLRRLSGFGKCGMLLDLWHEMQES-----GYPSD-GEIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 445 ~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
+-.+...+.+.|++++|+..|++..+. ...++ ..+++.+..++.+.|++++|+..++++++.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 334455555556666665555554421 00111 334555555555555555555555555543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.24 E-value=0.099 Score=38.47 Aligned_cols=140 Identities=11% Similarity=0.041 Sum_probs=82.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHH
Q 008633 383 LKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLL 462 (558)
Q Consensus 383 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 462 (558)
.-.|.+++..+++.+.... .+..-||-+|--....-+-+...+.++.+-+ -.| ....++.....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~---~FD----------ls~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhh---hcC----------chhhhcHHHHH
Confidence 3456666666766666553 2444555555433344444444444433322 111 11223333333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 008633 463 DLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIKIAR 542 (558)
Q Consensus 463 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 542 (558)
..+-.+ .-+...++..++.+.++|+-+.-.++++++.+.+ .|++.....+..+|.+-|...++.+++.+.=+.|
T Consensus 77 ~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 222222 1244566777788888888888888888876654 6778888888888888888888888888887776
Q ss_pred CC
Q 008633 543 QN 544 (558)
Q Consensus 543 ~~ 544 (558)
++
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 64
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.17 E-value=0.15 Score=37.58 Aligned_cols=139 Identities=18% Similarity=0.195 Sum_probs=101.4
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhH
Q 008633 347 YISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDR-GIVPSTGTITSFLEPLCSYGPPHA 425 (558)
Q Consensus 347 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~ 425 (558)
+.-.|.+++..++..+... ..+..-||.+|--....-+-+...++++..-.. .+.|-. -...++.++...+.
T Consensus 12 ~ildG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~-Nlk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINNT--- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTTC---
T ss_pred HHHhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhhcCchhhh-cHHHHHHHHHHhcc---
Confidence 4567899999999999986 457778999998888888888777777765332 111110 11223333333322
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 008633 426 AMMMYKKARKVGCKLSLTAYKLLLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLR 505 (558)
Q Consensus 426 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (558)
+.......++.+..+|+-+...++++.+.+.+ +|++...-.+..+|.+.|...++-+++.++.+
T Consensus 85 ---------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 85 ---------------LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp ---------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 23455666788889999999999999987755 78888999999999999999999999999999
Q ss_pred CCC
Q 008633 506 KGF 508 (558)
Q Consensus 506 ~g~ 508 (558)
+|+
T Consensus 149 ~G~ 151 (161)
T d1wy6a1 149 KGE 151 (161)
T ss_dssp TTC
T ss_pred HhH
Confidence 986
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.01 E-value=0.017 Score=41.44 Aligned_cols=21 Identities=5% Similarity=0.017 Sum_probs=9.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHH
Q 008633 204 VMDSFIRAGQVYKAIQMLGRL 224 (558)
Q Consensus 204 li~~~~~~g~~~~A~~~~~~~ 224 (558)
+...+.+.|++++|++.|++.
T Consensus 11 lG~~~~~~g~y~~A~~~~~~A 31 (95)
T d1tjca_ 11 LGKVAYTEADYYHTELWMEQA 31 (95)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.71 E-value=0.2 Score=37.98 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=7.5
Q ss_pred CHhHHHHHHHHHHhCC
Q 008633 492 QLENAVLVMEESLRKG 507 (558)
Q Consensus 492 ~~~~A~~~~~~m~~~g 507 (558)
+.++|.+++++..+.|
T Consensus 110 d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4444444444444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.70 E-value=0.21 Score=37.94 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCC
Q 008633 316 GRIDDAIEVFDTMKEKGCGPDTNAYNAVISNYIS----VGDFDECMKYYKGMSSYN 367 (558)
Q Consensus 316 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 367 (558)
.+.++|.+++++..+.| +...+..|...|.. ..+.++|.++|++..+.|
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g 89 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN 89 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC
Confidence 34455555555554444 23333334444432 234455555555554443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.31 E-value=1.4 Score=32.43 Aligned_cols=66 Identities=11% Similarity=0.100 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHcCC---ChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 008633 440 LSLTAYKLLLRRLSGFG---KCGMLLDLWHEMQESGYPSDG-EIYEYVIAGLCNIGQLENAVLVMEESLRK 506 (558)
Q Consensus 440 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (558)
++..+--....++.+.. +.++++.+++++.+.+ +.+. ..+..|.-+|.+.|++++|.+.++.+++.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 44444444444555443 3445666666665432 2222 34455555666666666666666666644
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.12 E-value=1 Score=31.27 Aligned_cols=48 Identities=8% Similarity=0.091 Sum_probs=28.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 008633 178 FFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLE 225 (558)
Q Consensus 178 ~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~ 225 (558)
+.-++.+-+..+....+.|++....+.+++|-+.+++..|+.+++-++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK 68 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 68 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444455555555556666666666666666666666666666655
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=88.61 E-value=9.1 Score=35.20 Aligned_cols=325 Identities=11% Similarity=-0.026 Sum_probs=158.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HhCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 008633 170 VKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFI--RAGQVYKAIQMLGRLEDFGLKF-DAESLNVVLWCLCQR 246 (558)
Q Consensus 170 i~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~--~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~ 246 (558)
+.-..+.|+..++..+...+... | ...|...-..-. ......+...++++ ..-.| ....-..-+..+.+.
T Consensus 13 a~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~---~p~~P~~~~lr~~~l~~L~~~ 85 (450)
T d1qsaa1 13 IKQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNFVRA---NPTLPPARTLQSRFVNELARR 85 (450)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHHHHH---CCCChhHHHHHHHHHHHHHhc
Confidence 34456778888877777776422 2 333433322222 22344444444333 21111 112233445667777
Q ss_pred CCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008633 247 LHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVAEGFSPDSLTFSFLIEGLGRAGRIDDAIEVFD 326 (558)
Q Consensus 247 ~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 326 (558)
++++.....+ ...|.+...-.....+....|+.++|.+.+..+-..|... .+.+..++.
T Consensus 86 ~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~-----------------p~~c~~l~~ 144 (450)
T d1qsaa1 86 EDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ-----------------PNACDKLFS 144 (450)
T ss_dssp TCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC-----------------CTHHHHHHH
T ss_pred cCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----------------chHHHHHHH
Confidence 7776644433 2344566666677777888888888887777666554221 112223344
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 008633 327 TMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSSYNCEPNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPS 406 (558)
Q Consensus 327 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 406 (558)
.+.+.|.. +...+-.-+......|+...|..+...+.. .........+........+.. .. ... ..+
T Consensus 145 ~~~~~~~l-t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~----~~~~~~~a~~~l~~~p~~~~~---~~---~~~--~~~ 211 (450)
T d1qsaa1 145 VWRASGKQ-DPLAYLERIRLAMKAGNTGLVTVLAGQMPA----DYQTIASAIISLANNPNTVLT---FA---RTT--GAT 211 (450)
T ss_dssp HHHHTTCS-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCG----GGHHHHHHHHHHHHCGGGHHH---HH---HHS--CCC
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHcCChhhHHHHHhhCCh----hHHHHHHHHHHHHhChHhHHH---HH---hcC--CCC
Confidence 44444332 333444445555566777777666654431 112222333333222222211 11 111 122
Q ss_pred HHHHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHcCCChhHHHHHHHHHHHCCCCCCHHHH
Q 008633 407 TGTITSFLEPLCS--YGPPHAAMMMYKKARKVGCKLSLTAYKL----LLRRLSGFGKCGMLLDLWHEMQESGYPSDGEIY 480 (558)
Q Consensus 407 ~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 480 (558)
......+..++.+ ..+.+.|..++........ .+...+.. +...+...+..+.+...+......+ .+....
T Consensus 212 ~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ 288 (450)
T d1qsaa1 212 DFTRQMAAVAFASVARQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLI 288 (450)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHH
T ss_pred hhhhHHHHHHHHHHhccChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHH
Confidence 2222222222222 2456666666666554321 22222221 2222233455666666666665543 244444
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008633 481 EYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLLASNKLESAYNLFRKIK 539 (558)
Q Consensus 481 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 539 (558)
...+......+++..+...++.|... ..-...-..=+.+++...|+.++|..+|....
T Consensus 289 ~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 289 ERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 44444455667777777777766432 11223344456677777888888888777765
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.51 E-value=2.5 Score=30.96 Aligned_cols=48 Identities=4% Similarity=0.151 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 008633 318 IDDAIEVFDTMKEKGCGPDTNAYNAVISNYISVGDFDECMKYYKGMSS 365 (558)
Q Consensus 318 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 365 (558)
.++++.+++++.+.+..-....+-.|.-+|.+.|++++|.+.++.+.+
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555555555432111112333444555555555555555555554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=85.25 E-value=14 Score=33.87 Aligned_cols=347 Identities=10% Similarity=-0.009 Sum_probs=185.9
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCH
Q 008633 154 IKHPNVAKDVKSYNVIVKALGRRKFFDFMCNVLSDMAKEGVNPDLETLSIVMDSFIRAGQVYKAIQMLGRLEDFGLKFDA 233 (558)
Q Consensus 154 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~m~~~g~~~~~~t~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 233 (558)
.+.++.+.....-..-+..+.+.+++...+..+. ..+.+...-.....+....|+.++|.+.+..+=..|.. ..
T Consensus 63 ~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p 136 (450)
T d1qsaa1 63 RANPTLPPARTLQSRFVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QP 136 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CC
T ss_pred HHCCCChhHHHHHHHHHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-Cc
Confidence 3344433333344455667778888776544331 22345665566777777888888887776665544321 22
Q ss_pred HHHHHHHHHHH------------------hcCCHhHHHHHHHHhhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008633 234 ESLNVVLWCLC------------------QRLHVGAASSLFNSMKGKVLFNVMTYNIVISGWSKLGQVVEMERVLKEIVA 295 (558)
Q Consensus 234 ~~~~~ll~~~~------------------~~~~~~~A~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 295 (558)
..+..+...+. ..|+...|..+...+... ........+........+. .. ...
T Consensus 137 ~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~---~~~~~~a~~~l~~~p~~~~---~~---~~~ 207 (450)
T d1qsaa1 137 NACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD---YQTIASAIISLANNPNTVL---TF---ART 207 (450)
T ss_dssp THHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG---GHHHHHHHHHHHHCGGGHH---HH---HHH
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChh---HHHHHHHHHHHHhChHhHH---HH---Hhc
Confidence 23333333333 334444444443333221 2222333333332222211 11 111
Q ss_pred cCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHhhhCCCC
Q 008633 296 EGFSPDSLTFSFLIEGLGR--AGRIDDAIEVFDTMKEKGCGPDTNAYNAVISN----YISVGDFDECMKYYKGMSSYNCE 369 (558)
Q Consensus 296 ~g~~p~~~t~~~ll~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~----~~~~g~~~~A~~~~~~m~~~~~~ 369 (558)
. ..+......+..++.+ ..+.+.+..++......... +..-+..+-.. +...+..+.+..++......+
T Consensus 208 ~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~-- 282 (450)
T d1qsaa1 208 T--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-- 282 (450)
T ss_dssp S--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--
T ss_pred C--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--
Confidence 1 2333333334444433 25677788888777655332 22222222222 234566777888887776653
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 008633 370 PNMDTYTRLISGLLKSRKVADALEVFEEMLDRGIVPSTGTITSFLEPLCSYGPPHAAMMMYKKARKVGCKLSLTAYKLLL 449 (558)
Q Consensus 370 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 449 (558)
.+.......+......+++..+...+..|.... .....-.--+..++...|+.+.|...|..+... ++ -|..|.
T Consensus 283 ~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LA 356 (450)
T d1qsaa1 283 QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVA 356 (450)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHH
T ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHH
Confidence 344445556666677788888888888774332 122233233456778889999999888887642 33 343332
Q ss_pred HHHHcCCChhHHHHHHHHHHHCC--CCCCHH----HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008633 450 RRLSGFGKCGMLLDLWHEMQESG--YPSDGE----IYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLSNKLL 523 (558)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 523 (558)
.. +.|..-. +.... ..+... .-..-+..+...|...+|...+..+.+. .+......+.....
T Consensus 357 a~--~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~ 424 (450)
T d1qsaa1 357 AQ--RIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAF 424 (450)
T ss_dssp HH--HTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHH
T ss_pred HH--HcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 21 1221100 00000 000100 0112356677899999999999988754 35566777888899
Q ss_pred hcCCHHHHHHHHHHH
Q 008633 524 ASNKLESAYNLFRKI 538 (558)
Q Consensus 524 ~~g~~~~A~~~~~~m 538 (558)
+.|.++.|+....+.
T Consensus 425 ~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 425 NNQWWDLSVQATIAG 439 (450)
T ss_dssp HTTCHHHHHHHHHHT
T ss_pred HCCChhHHHHHHHHH
Confidence 999999999877665
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.65 E-value=3.4 Score=28.52 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008633 458 CGMLLDLWHEMQESGYPSDGEIYEYVIAGLCNIGQLENAVLVMEESLRKGFCPSRLVYSKLS 519 (558)
Q Consensus 458 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 519 (558)
.-++.+-++.+...++.|++.+..+.+.+|.+.+++..|+++++-...+ ..++...|..++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil 82 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence 3345555555666666777777777777777777777777777655543 223344554444
|