Citrus Sinensis ID: 008636

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------56
MDRLKPNPANSCPLTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLDRPVRILTAGSPPPAPVLLRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSMSMSHSRM
cccccccccccccccHHHHHHHHHHHcccccEEEEcccEEEHHHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHccccccHHcccccccHHHHHHHHHccccEEEEEccccHHHHHHHHHHccccccccEEEEEEcccccccccccccccccccccccHHHHHccccccccccccccccccHHcccccccccccccEEEccHHHHHHHHHHHHHcccccccEEEEcccccccccccHHHHHHHHcccEEccccccHHHHHHHHHHccccEEccHHHHHHHHHcccccccccccEEEEEEcccccHHHHHHHHHcccEEEEEEccccccccccccccccccccccHHHHHHHHHcccccccccccEEEEccccccccccccccEEEEEEEccHHcHHcccccccccccccccccccccEEEEcccccEEEEcccccEEEcccccccHHHHHHHHHccccccEEEEEEcccccccccEEEEEEEccccccccccccHHHHHHHHHccccccccccEEEEcccccccccccccHHHHHHHHHccccccccc
cccccccccccccccHHHHHHHHHHHcccccEEEEccEEEcHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHcccccccccEEEEccccccccccccccccccccccHHHHHHHHcccccccccccccccccEEEEEcccccccccEEEEccHHHHHHHHHHHHHcccccccEEEEEEccEEcccccHHHHHHHHcccEEEEccccHHHHHHHHHHccccEcccHHHHHHHHHHccccccccccEEEEEccccccHHHHHHHHHcccEEEEEcccccccccEEEccccHHHccccHHHHHHHcccccccccccccEEEEccccccccccccccEEEEEEEccccccccccHHHHHHHEcccccEEEEEEEEEcccccEEEEEEHHHcEEEccEEEcHHHHHHHHcccccEEEEEEEEEEEcccEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHcccccEEEEcccccccccHHHHHHHHHHHHHHcccccccc
mdrlkpnpanscpltplGFIERAatacddcpsiiyndttytWSQTYRRCLQLASSlssfginpghvvsviapnipamyelhfavpmsgaiFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEvvslfpphsktpklvlitddkeisssssppprippadfvdtyenmlakgdpqfswvrpksdldpmvlnytwgttsapkgvVQCYKAFFIIAVDSLIDWVVPKQSVLLwtlpmfhnngwsftwGAAVVGATNvclrkfdapTVFALIRKHGVTHMCGAPIVLNllssspeakqldrpvriltagspppapvllrteslgfivshgygkteiagvnvscawkpkwnklparERASLKARqgvrtigltevdivdpetglsvkrdgqtrgeiVMRGGslmlgylkdpeatskcmkdgryytgdvgmmhpdgyleikdRSKDviisggenisstEIESVLyshpmvneaavvgrpdpfwqeipcafvslktgtdsggmmttEKDIIQYCRariprymvpktvvfidelpktatgkvqKYVLGDIAnsmsmshsrm
mdrlkpnpanscpltPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDkeissssspppripPADFVDTYENMLAKgdpqfswvrpKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLDRPVRILtagspppapvLLRTESLGFIVSHGYGKTEIAGVNVSCAWKpkwnklpareraslkarqgvrtigltevdivdpetglsvkrdgqtrgeivmrggslmlgylkdpeatskcmKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLktgtdsggmmTTEKDIIQYCRARIPRYMVPKTvvfidelpktatgkvqkyvlGDIAnsmsmshsrm
MDRLKPNPANSCPLTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHlssslllevvslFPPHSKTPKLVLITDDKEisssssppprippADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLDRPVRILTAGSPPPAPVLLRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSMSMSHSRM
************PLTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLI********************FVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLL************************PVLLRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVK****TRGEIVMRGGSLMLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDI***********
****KPNPANSCPLTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLDRPVRILTAGSPPPAPVLLRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSM*M*****
MDRLKPNPANSCPLTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDD***********RIPPADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLDRPVRILTAGSPPPAPVLLRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSMSMSHSRM
***LKPNPANSCPLTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKE******PPPRIPPADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLDRPVRILTAGSPPPAPVLLRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSM*******
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MDRLKPNPANSCPLTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQLDRPVRILTAGSPPPAPVLLRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSMSMSHSRM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query558 2.2.26 [Sep-21-2011]
Q9FFE6552 Probable acyl-activating yes no 0.985 0.996 0.625 0.0
Q9FFE9550 Probable acyl-activating no no 0.973 0.987 0.630 0.0
Q9LPK7549 Probable acyl-activating no no 0.974 0.990 0.587 0.0
Q9LQS1544 Probable acyl-activating no no 0.971 0.996 0.600 0.0
O80658545 Probable acyl-activating no no 0.969 0.992 0.581 0.0
Q9LPK6550 Probable acyl-activating no no 0.976 0.990 0.580 0.0
Q9C8D4572 Butyrate--CoA ligase AAE1 no no 0.967 0.944 0.495 1e-152
F4HUK6556 Probable acyl-activating no no 0.967 0.971 0.456 1e-145
Q9SS00578 Probable acyl-activating no no 0.974 0.941 0.464 1e-145
Q9SS01580 Benzoate--CoA ligase, per no no 0.973 0.936 0.462 1e-143
>sp|Q9FFE6|AAE5_ARATH Probable acyl-activating enzyme 5, peroxisomal OS=Arabidopsis thaliana GN=AAE5 PE=2 SV=1 Back     alignment and function desciption
 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/560 (62%), Positives = 439/560 (78%), Gaps = 10/560 (1%)

Query: 1   MDRLKPNPANSCPLTPLGFIERAATACDDCPSIIY-NDTTYTWSQTYRRCLQLASSLSSF 59
           M+++KP  ANS PLTP+GF+ERAAT   DC SI+Y ++T YTW +T  RCL++ASSLSS 
Sbjct: 1   MEQMKPCAANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSI 60

Query: 60  GINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDH 119
           GI    VVSV++PN PAMYEL FAVPMSGAI N INTRLDART+S++L+H  SKL+FVD 
Sbjct: 61  GIGRSDVVSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCGSKLLFVDV 120

Query: 120 LSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTYENMLAKGDPQ 179
            S  L +E +S+    +  P LV I D +E    +    R     F  TY++++ +GD  
Sbjct: 121 FSVDLAVEAISMMT--TDPPILVFIADKEEEGGDADVADR---TKFSYTYDDLIHRGDLD 175

Query: 180 FSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPM 239
           F W+RP+S+ DP+VLNYT GTTSAPKGVV C++  F++++DSLIDW VPK  V LWTLP+
Sbjct: 176 FKWIRPESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSIDSLIDWTVPKNPVYLWTLPI 235

Query: 240 FHNNGWSFTWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQ 299
           FH NGWS+ WG A VG TNVCLRKFDAP ++ LIR HGVTHMCGAP+VLN+LS++ E + 
Sbjct: 236 FHANGWSYPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLNMLSATNEFQP 295

Query: 300 LDRPVRILTAGSPPPAPVLLRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERA 359
           L+RPV ILTAG+PPPA VLLR ES+GF++SHGYG TE AG+NVSCAWKP+WN+LPA +RA
Sbjct: 296 LNRPVNILTAGAPPPAAVLLRAESIGFVISHGYGLTETAGLNVSCAWKPQWNRLPASDRA 355

Query: 360 SLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMK 419
            LKARQGVRT+G TE+D+VDPE+G SV+R+G+T GEIVMRG S+MLGYLKDP  T K +K
Sbjct: 356 RLKARQGVRTVGFTEIDVVDPESGRSVERNGETVGEIVMRGSSIMLGYLKDPVGTEKALK 415

Query: 420 DGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPD 479
           +G +YTGDVG++H DGYLEIKDRSKD+II+GGEN+SS E+E+VLY++P VNE AVV RPD
Sbjct: 416 NGWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTNPAVNEVAVVARPD 475

Query: 480 PFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKV 539
            FW E PCAFVSLK+G        TE ++I+YCR ++P+YMVPKTV F+DELPKT+TGKV
Sbjct: 476 VFWGETPCAFVSLKSGLTQ---RPTEVEMIEYCRKKMPKYMVPKTVSFVDELPKTSTGKV 532

Query: 540 QKYVLGDIANSMSMSH-SRM 558
            K+VL +IA  M  +  SRM
Sbjct: 533 MKFVLREIAKKMGTTRLSRM 552
May act as an acid--thiol ligase that activates carboxylic acids by forming acyl-CoAs.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -
>sp|Q9FFE9|AAE6_ARATH Probable acyl-activating enzyme 6 OS=Arabidopsis thaliana GN=AAE6 PE=2 SV=1 Back     alignment and function description
>sp|Q9LPK7|AEE10_ARATH Probable acyl-activating enzyme 10 OS=Arabidopsis thaliana GN=AEE10 PE=2 SV=1 Back     alignment and function description
>sp|Q9LQS1|AAE8_ARATH Probable acyl-activating enzyme 8 OS=Arabidopsis thaliana GN=AAE8 PE=2 SV=1 Back     alignment and function description
>sp|O80658|AAE4_ARATH Probable acyl-activating enzyme 4 OS=Arabidopsis thaliana GN=AEE4 PE=2 SV=1 Back     alignment and function description
>sp|Q9LPK6|AEE9_ARATH Probable acyl-activating enzyme 9 OS=Arabidopsis thaliana GN=AEE9 PE=2 SV=1 Back     alignment and function description
>sp|Q9C8D4|AAE11_ARATH Butyrate--CoA ligase AAE11, peroxisomal OS=Arabidopsis thaliana GN=AAE11 PE=1 SV=1 Back     alignment and function description
>sp|F4HUK6|AAE1_ARATH Probable acyl-activating enzyme 1, peroxisomal OS=Arabidopsis thaliana GN=AAE1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SS00|AAE12_ARATH Probable acyl-activating enzyme 12, peroxisomal OS=Arabidopsis thaliana GN=AAE12 PE=2 SV=1 Back     alignment and function description
>sp|Q9SS01|AAE20_ARATH Benzoate--CoA ligase, peroxisomal OS=Arabidopsis thaliana GN=AAE20 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query558
255561466556 AMP dependent ligase, putative [Ricinus 0.992 0.996 0.689 0.0
225466183549 PREDICTED: putative acyl-CoA synthetase 0.980 0.996 0.673 0.0
224134905553 predicted protein [Populus trichocarpa] 0.985 0.994 0.682 0.0
224127758550 acyl:coa ligase acetate-coa synthetase-l 0.982 0.996 0.680 0.0
359476425588 PREDICTED: medium-chain-fatty-acid--CoA 0.980 0.930 0.673 0.0
224127933548 acyl:coa ligase acetate-coa synthetase-l 0.978 0.996 0.676 0.0
224118022554 acyl:coa ligase acetate-coa synthetase-l 0.987 0.994 0.672 0.0
147800064537 hypothetical protein VITISV_042774 [Viti 0.958 0.996 0.667 0.0
449462358557 PREDICTED: probable acyl-activating enzy 0.982 0.983 0.668 0.0
255562407562 AMP dependent ligase, putative [Ricinus 0.973 0.966 0.663 0.0
>gi|255561466|ref|XP_002521743.1| AMP dependent ligase, putative [Ricinus communis] gi|223538956|gb|EEF40553.1| AMP dependent ligase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  803 bits (2073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/560 (68%), Positives = 457/560 (81%), Gaps = 6/560 (1%)

Query: 1   MDRLKPNPANSCPLTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFG 60
           MD LKP PANS PLTPL F+ERA+T   DCPSI+YN  TYTWSQT+RRCLQLASSLSS G
Sbjct: 1   MDHLKPKPANSFPLTPLSFLERASTVYGDCPSIVYNTATYTWSQTHRRCLQLASSLSSGG 60

Query: 61  INPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHL 120
              G VVSV+APN P MYEL FAVPMSGA+ N INTRLDART+S++L+HS+SKLVFVD L
Sbjct: 61  FTRGDVVSVVAPNTPPMYELQFAVPMSGAVLNNINTRLDARTVSVLLRHSQSKLVFVDCL 120

Query: 121 SSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTYENMLAKGDPQF 180
           S  L+LE VSLFP   K P LVLITDD E + +SS        DF  TYE+M+ KGDP+F
Sbjct: 121 SRDLVLEAVSLFPSSVKRPTLVLITDDDE-APASSSTSSSSTVDFCCTYESMVEKGDPEF 179

Query: 181 SWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMF 240
            WV+P+S+ DPM+LNYT GTTS+PKGVV C++  +II V+SLIDW VP+Q V LWTLP+F
Sbjct: 180 KWVQPQSEWDPMILNYTSGTTSSPKGVVHCHRGIYIITVESLIDWNVPRQPVYLWTLPLF 239

Query: 241 HNNGWSFTWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQL 300
           H NGWSF WG A VG TN+C+RKFDA +++ LI++HGVTHMCGAP+VLN+L++SP+ + L
Sbjct: 240 HANGWSFPWGMAAVGGTNICIRKFDASSIYGLIKRHGVTHMCGAPVVLNMLTNSPDNEPL 299

Query: 301 DRPVRILTAGSPPPAPVLLRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERAS 360
            RPV ILTAG+PPPA VL RTESLGF+VSHGYG TE AG+ VSCAWKPKWN +PA ERA 
Sbjct: 300 KRPVHILTAGAPPPAAVLFRTESLGFVVSHGYGLTETAGLVVSCAWKPKWNTVPASERAR 359

Query: 361 LKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMK- 419
           LKARQGVR  G TE+D++DP+TGLSVKRDG + GEIV+RGG +M+GYLKDP+ TSKC+K 
Sbjct: 360 LKARQGVRIAGFTEIDVIDPKTGLSVKRDGLSLGEIVLRGGCVMMGYLKDPDGTSKCLKD 419

Query: 420 DGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPD 479
           DG +YTGDVG+MHPDGYLEIKDRSKDVIISGGENISS E+ESVLYS+P+VNEAAVV RPD
Sbjct: 420 DGWFYTGDVGVMHPDGYLEIKDRSKDVIISGGENISSVEVESVLYSNPVVNEAAVVARPD 479

Query: 480 PFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKV 539
            +W E PCAFVSL+ G        +EKDII+YCR ++P YMVPKTVVF +ELPKT+TGK+
Sbjct: 480 EYWGETPCAFVSLRDGARE---KVSEKDIIEYCREKMPHYMVPKTVVFKEELPKTSTGKI 536

Query: 540 QKYVLGDIANSMSMSH-SRM 558
           QK+VL DIA +M  S  SRM
Sbjct: 537 QKFVLRDIAKAMGASKVSRM 556

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225466183|ref|XP_002263801.1| PREDICTED: putative acyl-CoA synthetase YngI-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224134905|ref|XP_002321934.1| predicted protein [Populus trichocarpa] gi|222868930|gb|EEF06061.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224127758|ref|XP_002329170.1| acyl:coa ligase acetate-coa synthetase-like protein [Populus trichocarpa] gi|222870951|gb|EEF08082.1| acyl:coa ligase acetate-coa synthetase-like protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359476425|ref|XP_002263877.2| PREDICTED: medium-chain-fatty-acid--CoA ligase [Vitis vinifera] Back     alignment and taxonomy information
>gi|224127933|ref|XP_002329213.1| acyl:coa ligase acetate-coa synthetase-like protein [Populus trichocarpa] gi|222870994|gb|EEF08125.1| acyl:coa ligase acetate-coa synthetase-like protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224118022|ref|XP_002331538.1| acyl:coa ligase acetate-coa synthetase-like protein [Populus trichocarpa] gi|222873762|gb|EEF10893.1| acyl:coa ligase acetate-coa synthetase-like protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147800064|emb|CAN64147.1| hypothetical protein VITISV_042774 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449462358|ref|XP_004148908.1| PREDICTED: probable acyl-activating enzyme 5, peroxisomal-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255562407|ref|XP_002522210.1| AMP dependent ligase, putative [Ricinus communis] gi|223538581|gb|EEF40185.1| AMP dependent ligase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query558
TAIR|locus:2171357550 AT5G16340 [Arabidopsis thalian 0.973 0.987 0.628 5.3e-191
TAIR|locus:2171402552 AAE5 "acyl activating enzyme 5 0.985 0.996 0.616 2.3e-190
TAIR|locus:2204360544 AT1G75960 [Arabidopsis thalian 0.971 0.996 0.593 3.1e-177
TAIR|locus:2027012549 AT1G21530 [Arabidopsis thalian 0.974 0.990 0.567 2.8e-176
TAIR|locus:2027032550 AT1G21540 [Arabidopsis thalian 0.976 0.990 0.565 9.6e-176
TAIR|locus:2195950545 AAE2 "acyl activating enzyme 2 0.969 0.992 0.559 1.4e-172
TAIR|locus:2013860572 AAE11 "acyl-activating enzyme 0.967 0.944 0.481 1.2e-136
TIGR_CMR|SPO_0677542 SPO_0677 "AMP-binding protein" 0.951 0.979 0.468 5.4e-134
TAIR|locus:2030407556 AAE1 "acyl activating enzyme 1 0.962 0.965 0.454 1.8e-133
TAIR|locus:2086122569 AAE7 "acyl-activating enzyme 7 0.991 0.971 0.450 2.7e-132
TAIR|locus:2171357 AT5G16340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1851 (656.6 bits), Expect = 5.3e-191, P = 5.3e-191
 Identities = 347/552 (62%), Positives = 429/552 (77%)

Query:     1 MDRLKPNPANSCPLTPLGFIERAATACDDCPSIIY-NDTTYTWSQTYRRCLQLASSLSSF 59
             M+ +KP  ANS PLTP+GF+ERAAT   DC SI+Y ++T YTW +T  RCL++ASSLSS 
Sbjct:     1 MEEMKPCAANSPPLTPIGFLERAATVYGDCTSIVYGSNTVYTWRETNLRCLRVASSLSSI 60

Query:    60 GINPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDH 119
             GI    VVSV++PN PAMYEL FAVPMSGAI N INTRLDART+S++L+H ESKL+FVD 
Sbjct:    61 GIGRSDVVSVLSPNTPAMYELQFAVPMSGAILNNINTRLDARTVSVLLRHCESKLLFVDV 120

Query:   120 XXXXXXXXXXXXFPPHSKTPKLVLITDDKEXXXXXXXXXXXXXADFVDTYENMLAKGDPQ 179
                             +  P LV+I D +E             + F  TY++++ +GDP 
Sbjct:   121 FSVDLAVEAVSMMT--TDPPILVVIADKEEEGGVADVADL---SKFSYTYDDLIERGDPG 175

Query:   180 FSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPM 239
             F W+RP+S+ DP+VLNYT GTTSAPKGVV C++  F+++VDSLIDW VPK  V LWTLP+
Sbjct:   176 FKWIRPESEWDPVVLNYTSGTTSAPKGVVHCHRGIFVMSVDSLIDWAVPKNPVYLWTLPI 235

Query:   240 FHNNGWSFTWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQ 299
             FH+NGW+  WG A VG TNVCLRKFDAP ++ LIR HGVTHMCGAP+VLN+LS++ E++ 
Sbjct:   236 FHSNGWTNPWGIAAVGGTNVCLRKFDAPLIYRLIRDHGVTHMCGAPVVLNMLSATQESQP 295

Query:   300 LDRPVRILTAGSPPPAPVLLRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERA 359
             L+ PV ILTAGSPPPA VLLR ES+GF++SHGYG TE AGV VSCAWKPKWN LPA +RA
Sbjct:   296 LNHPVNILTAGSPPPATVLLRAESIGFVISHGYGLTETAGVIVSCAWKPKWNHLPASDRA 355

Query:   360 SLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMK 419
              LKARQGVRT+G TE+D+VDPE+GLSV+R+G+T GEIVMRG S+MLGYLKDP  T K +K
Sbjct:   356 RLKARQGVRTVGFTEIDVVDPESGLSVERNGETVGEIVMRGSSVMLGYLKDPVGTEKALK 415

Query:   420 DGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPD 479
             +G +YTGDVG++H DGYLEIKDRSKD+II+GGEN+SS E+E+VLY+ P VNE AVV RPD
Sbjct:   416 NGWFYTGDVGVIHSDGYLEIKDRSKDIIITGGENVSSVEVETVLYTIPAVNEVAVVARPD 475

Query:   480 PFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKV 539
              FW E PCAFVSLK G  SG    TE+++++YCR ++P+YMVPKTV F+DELPK++TGKV
Sbjct:   476 EFWGETPCAFVSLKNGF-SG--KPTEEELMEYCRKKMPKYMVPKTVSFMDELPKSSTGKV 532

Query:   540 QKYVLGDIANSM 551
              K+VL DIA  M
Sbjct:   533 TKFVLRDIAKKM 544
GO:0003824 "catalytic activity" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
TAIR|locus:2171402 AAE5 "acyl activating enzyme 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204360 AT1G75960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027012 AT1G21530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027032 AT1G21540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2195950 AAE2 "acyl activating enzyme 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013860 AAE11 "acyl-activating enzyme 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0677 SPO_0677 "AMP-binding protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TAIR|locus:2030407 AAE1 "acyl activating enzyme 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086122 AAE7 "acyl-activating enzyme 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O53306FAC13_MYCTU6, ., 2, ., 1, ., 30.31960.83150.9224yesno
Q9FFE6AAE5_ARATH6, ., 2, ., 1, ., -0.6250.98560.9963yesno
O31826YNGI_BACSU6, ., 2, ., 1, ., -0.30890.90140.9162yesno
Q5SKN9LCFCS_THET86, ., 2, ., 1, ., 30.33140.89060.9186yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.2.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00151260
hypothetical protein (553 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query558
cd12118520 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt 0.0
PRK08162545 PRK08162, PRK08162, acyl-CoA synthetase; Validated 0.0
PLN02479567 PLN02479, PLN02479, acetate-CoA ligase 0.0
PLN03102579 PLN03102, PLN03102, acyl-activating enzyme; Provis 0.0
PRK06187521 PRK06187, PRK06187, long-chain-fatty-acid--CoA lig 1e-137
COG0318534 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ 1e-132
cd12119517 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth 1e-126
cd05915509 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase 1e-123
cd05929342 cd05929, BACL_like, Bacterial Bile acid CoA ligase 1e-103
cd05936468 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain 6e-98
PRK07656513 PRK07656, PRK07656, long-chain-fatty-acid--CoA lig 7e-96
cd05917347 cd05917, FACL_like_2, Uncharacterized subfamily of 8e-92
pfam00501412 pfam00501, AMP-binding, AMP-binding enzyme 2e-87
PRK08316523 PRK08316, PRK08316, acyl-CoA synthetase; Validated 2e-84
cd04433338 cd04433, AFD_class_I, Adenylate forming domain, Cl 3e-81
COG0365528 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat 1e-80
PRK07008539 PRK07008, PRK07008, long-chain-fatty-acid--CoA lig 1e-75
cd05934421 cd05934, FACL_DitJ_like, Uncharacterized subfamily 2e-75
PRK03640483 PRK03640, PRK03640, O-succinylbenzoic acid--CoA li 5e-75
PRK06018542 PRK06018, PRK06018, putative acyl-CoA synthetase; 2e-74
cd05911487 cd05911, Firefly_Luc_like, Firefly luciferase of l 2e-74
PRK06839496 PRK06839, PRK06839, acyl-CoA synthetase; Validated 1e-71
cd05904504 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) 9e-71
cd05903437 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li 1e-70
cd05912407 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase 5e-68
PRK06145497 PRK06145, PRK06145, acyl-CoA synthetase; Validated 8e-68
PRK08315559 PRK08315, PRK08315, AMP-binding domain protein; Va 8e-68
PRK06155542 PRK06155, PRK06155, crotonobetaine/carnitine-CoA l 3e-66
cd05926345 cd05926, FACL_fum10p_like, Subfamily of fatty acid 2e-65
cd05941430 cd05941, MCS, Malonyl-CoA synthetase (MCS) 1e-64
cd05935430 cd05935, LC_FACS_like, Putative long-chain fatty a 1e-63
PRK12583558 PRK12583, PRK12583, acyl-CoA synthetase; Provision 6e-63
PRK08314546 PRK08314, PRK08314, long-chain-fatty-acid--CoA lig 3e-60
cd05920483 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l 4e-60
PRK07786542 PRK07786, PRK07786, long-chain-fatty-acid--CoA lig 2e-59
cd05922350 cd05922, FACL_like_6, Uncharacterized subfamily of 5e-59
PRK07529632 PRK07529, PRK07529, AMP-binding domain protein; Va 9e-59
PRK13295547 PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig 1e-58
PRK05605573 PRK05605, PRK05605, long-chain-fatty-acid--CoA lig 7e-58
cd05959506 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4e-57
TIGR01923436 TIGR01923, menE, O-succinylbenzoate-CoA ligase 1e-56
PRK06710563 PRK06710, PRK06710, long-chain-fatty-acid--CoA lig 4e-55
PLN02246537 PLN02246, PLN02246, 4-coumarate--CoA ligase 5e-55
PRK09088488 PRK09088, PRK09088, acyl-CoA synthetase; Validated 3e-54
PRK07470528 PRK07470, PRK07470, acyl-CoA synthetase; Validated 3e-54
PRK08276502 PRK08276, PRK08276, long-chain-fatty-acid--CoA lig 6e-53
COG1022613 COG1022, FAA1, Long-chain acyl-CoA synthetases (AM 2e-52
TIGR03208538 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate 7e-52
cd05972430 cd05972, MACS_like, Medium-chain acyl-CoA syntheta 4e-51
PRK07788549 PRK07788, PRK07788, acyl-CoA synthetase; Validated 6e-51
cd05971439 cd05971, MACS_like_3, Uncharacterized subfamily of 6e-51
cd05974433 cd05974, MACS_like_1, Uncharacterized subfamily of 9e-50
PRK06188524 PRK06188, PRK06188, acyl-CoA synthetase; Validated 2e-49
PRK06087547 PRK06087, PRK06087, short chain acyl-CoA synthetas 6e-49
cd05944359 cd05944, FACL_like_4, Uncharacterized subfamily of 6e-48
PRK05620576 PRK05620, PRK05620, long-chain-fatty-acid--CoA lig 5e-47
cd05919436 cd05919, BCL_like, Benzoate CoA ligase (BCL) and s 1e-46
PRK13391511 PRK13391, PRK13391, acyl-CoA synthetase; Provision 3e-46
PRK07514504 PRK07514, PRK07514, malonyl-CoA synthase; Validate 1e-45
PRK07798533 PRK07798, PRK07798, acyl-CoA synthetase; Validated 1e-43
PRK08008517 PRK08008, caiC, putative crotonobetaine/carnitine- 1e-43
PRK07787471 PRK07787, PRK07787, acyl-CoA synthetase; Validated 2e-43
PRK12406509 PRK12406, PRK12406, long-chain-fatty-acid--CoA lig 1e-42
cd05923495 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) 9e-42
PRK06164540 PRK06164, PRK06164, acyl-CoA synthetase; Validated 1e-41
PRK13382537 PRK13382, PRK13382, acyl-CoA synthetase; Provision 2e-41
PLN02860563 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase 3e-41
cd05907456 cd05907, VL_LC_FACS_like, Long-chain fatty acid Co 3e-41
PLN02574560 PLN02574, PLN02574, 4-coumarate--CoA ligase-like 4e-41
TIGR03098517 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form 9e-41
cd05928530 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co 2e-40
cd05973440 cd05973, MACS_like_2, Uncharacterized subfamily of 6e-40
PRK07867529 PRK07867, PRK07867, acyl-CoA synthetase; Validated 3e-39
cd05930445 cd05930, A_NRPS, The adenylation domain of nonribo 4e-39
COG1021542 COG1021, EntE, Peptide arylation enzymes [Secondar 3e-38
PRK08974560 PRK08974, PRK08974, long-chain-fatty-acid--CoA lig 1e-37
PRK04319570 PRK04319, PRK04319, acetyl-CoA synthetase; Provisi 2e-37
PRK13388540 PRK13388, PRK13388, acyl-CoA synthetase; Provision 5e-37
cd05969443 cd05969, MACS_like_4, Uncharacterized subfamily of 7e-37
PRK05677562 PRK05677, PRK05677, long-chain-fatty-acid--CoA lig 2e-36
cd05932504 cd05932, LC_FACS_bac, Bacterial long-chain fatty a 3e-36
PRK07059557 PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig 6e-36
PLN02330546 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 6e-36
cd12117474 cd12117, A_NRPS_Srf_like, The adenylation domain o 7e-36
TIGR02262508 TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil 1e-35
TIGR03205541 TIGR03205, pimA, dicarboxylate--CoA ligase PimA 3e-34
cd05970537 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s 4e-34
cd05909489 cd05909, AAS_C, C-terminal domain of the acyl-acyl 2e-33
PRK06178567 PRK06178, PRK06178, acyl-CoA synthetase; Validated 2e-33
cd05924365 cd05924, FACL_like_5, Uncharacterized subfamily of 5e-33
TIGR02275526 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP 6e-33
cd05967607 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) 9e-33
cd05958487 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) 1e-32
cd05945447 cd05945, DltA, D-alanine:D-alanyl carrier protein 3e-31
cd05968474 cd05968, AACS_like, Uncharacterized acyl-CoA synth 5e-31
PRK13390501 PRK13390, PRK13390, acyl-CoA synthetase; Provision 3e-30
PRK05852534 PRK05852, PRK05852, acyl-CoA synthetase; Validated 8e-30
PRK12492562 PRK12492, PRK12492, long-chain-fatty-acid--CoA lig 7e-29
cd05918447 cd05918, A_NRPS_SidN3_like, The adenylation (A) do 8e-29
PRK07638487 PRK07638, PRK07638, acyl-CoA synthetase; Validated 1e-28
PRK086331146 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola 2e-28
cd05927539 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty 2e-28
cd05940444 cd05940, FATP_FACS, Fatty acid transport proteins 3e-28
PRK08279600 PRK08279, PRK08279, long-chain-acyl-CoA synthetase 3e-28
PLN02430660 PLN02430, PLN02430, long-chain-fatty-acid-CoA liga 3e-27
TIGR02188625 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase 8e-27
cd12114476 cd12114, A_NRPS_TlmIV_like, The adenylation domain 9e-27
cd05931547 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) 1e-26
TIGR01733409 TIGR01733, AA-adenyl-dom, amino acid adenylation d 2e-26
cd05966602 cd05966, ACS, Acetyl-CoA synthetase (also known as 2e-26
PRK13383516 PRK13383, PRK13383, acyl-CoA synthetase; Provision 3e-25
PRK08751560 PRK08751, PRK08751, putative long-chain fatty acyl 7e-25
PRK05857540 PRK05857, PRK05857, acyl-CoA synthetase; Validated 1e-23
PRK10946536 PRK10946, entE, enterobactin synthase subunit E; P 6e-23
PRK09029458 PRK09029, PRK09029, O-succinylbenzoic acid--CoA li 1e-22
PRK10252 1296 PRK10252, entF, enterobactin synthase subunit F; P 1e-22
PRK00174637 PRK00174, PRK00174, acetyl-CoA synthetase; Provisi 1e-22
cd05933594 cd05933, ACSBG_like, Bubblegum-like very long-chai 2e-22
PRK12467 3956 PRK12467, PRK12467, peptide synthase; Provisional 1e-21
cd12116438 cd12116, A_NRPS_Ta1_like, The adenylation domain o 4e-21
PRK07445452 PRK07445, PRK07445, O-succinylbenzoic acid--CoA li 2e-20
cd05943616 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac 3e-20
PRK12316 5163 PRK12316, PRK12316, peptide synthase; Provisional 3e-20
COG1020642 COG1020, EntF, Non-ribosomal peptide synthetase mo 5e-20
cd05908499 cd05908, A_NRPS_MycA_like, The adenylation domain 2e-19
PRK12316 5163 PRK12316, PRK12316, peptide synthase; Provisional 6e-19
cd12115449 cd12115, A_NRPS_Sfm_like, The adenylation domain o 1e-18
TIGR02316628 TIGR02316, propion_prpE, propionate--CoA ligase 3e-18
PRK08308414 PRK08308, PRK08308, acyl-CoA synthetase; Validated 6e-18
PRK12316 5163 PRK12316, PRK12316, peptide synthase; Provisional 1e-16
PRK123165163 PRK12316, PRK12316, peptide synthase; Provisional 1e-16
PRK12467 3956 PRK12467, PRK12467, peptide synthase; Provisional 2e-16
cd05937468 cd05937, FATP_chFAT1_like, Uncharacterized subfami 3e-16
PRK10524629 PRK10524, prpE, propionyl-CoA synthetase; Provisio 4e-16
cd05914448 cd05914, FACL_like_3, Uncharacterized subfamily of 4e-16
PLN02654666 PLN02654, PLN02654, acetate-CoA ligase 5e-16
cd05906560 cd05906, A_NRPS_TubE_like, The adenylation domain 9e-16
PRK12467 3956 PRK12467, PRK12467, peptide synthase; Provisional 1e-15
cd05938535 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport 1e-15
PLN02387696 PLN02387, PLN02387, long-chain-fatty-acid-CoA liga 2e-15
cd05939474 cd05939, hsFATP4_like, Fatty acid transport protei 1e-13
PTZ00237647 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi 2e-13
PRK07824358 PRK07824, PRK07824, O-succinylbenzoic acid--CoA li 5e-13
TIGR01734502 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho 8e-13
PLN02736651 PLN02736, PLN02736, long-chain acyl-CoA synthetase 1e-12
PRK068141140 PRK06814, PRK06814, acylglycerophosphoethanolamine 1e-12
PRK05691 4334 PRK05691, PRK05691, peptide synthase; Validated 1e-12
cd05910455 cd05910, FACL_like_1, Uncharacterized subfamily of 1e-12
PRK04813503 PRK04813, PRK04813, D-alanine--poly(phosphoribitol 3e-12
PRK09192579 PRK09192, PRK09192, acyl-CoA synthetase; Validated 5e-12
PLN02861660 PLN02861, PLN02861, long-chain-fatty-acid-CoA liga 6e-12
cd05907456 cd05907, VL_LC_FACS_like, Long-chain fatty acid Co 7e-12
PRK05691 4334 PRK05691, PRK05691, peptide synthase; Validated 2e-11
PLN02614666 PLN02614, PLN02614, long-chain acyl-CoA synthetase 1e-10
PRK05691 4334 PRK05691, PRK05691, peptide synthase; Validated 5e-10
TIGR03443 1389 TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh 5e-10
PRK05851525 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c 5e-10
PRK056914334 PRK05691, PRK05691, peptide synthase; Validated 7e-10
PRK06178567 PRK06178, PRK06178, acyl-CoA synthetase; Validated 1e-09
cd05934421 cd05934, FACL_DitJ_like, Uncharacterized subfamily 2e-09
PRK07768545 PRK07768, PRK07768, long-chain-fatty-acid--CoA lig 2e-09
PRK09274552 PRK09274, PRK09274, peptide synthase; Provisional 5e-09
cd05903437 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li 2e-08
pfam1319343 pfam13193, DUF4009, Domain of unknown function (DU 3e-08
cd05941430 cd05941, MCS, Malonyl-CoA synthetase (MCS) 1e-07
PTZ00216700 PTZ00216, PTZ00216, acyl-CoA synthetase; Provision 1e-07
TIGR01217652 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase 3e-07
PRK06334539 PRK06334, PRK06334, long chain fatty acid--[acyl-c 3e-07
cd05940444 cd05940, FATP_FACS, Fatty acid transport proteins 5e-07
PTZ00342746 PTZ00342, PTZ00342, acyl-CoA synthetase; Provision 5e-07
PLN02861660 PLN02861, PLN02861, long-chain-fatty-acid-CoA liga 2e-06
PRK06060 705 PRK06060, PRK06060, acyl-CoA synthetase; Validated 2e-06
PRK03584655 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr 2e-05
PRK05850578 PRK05850, PRK05850, acyl-CoA synthetase; Validated 4e-05
PRK08043718 PRK08043, PRK08043, bifunctional acyl-[acyl carrie 2e-04
PRK12476612 PRK12476, PRK12476, putative fatty-acid--CoA ligas 3e-04
PRK07769631 PRK07769, PRK07769, long-chain-fatty-acid--CoA lig 5e-04
cd05910455 cd05910, FACL_like_1, Uncharacterized subfamily of 8e-04
PLN02736651 PLN02736, PLN02736, long-chain acyl-CoA synthetase 0.001
cd05912407 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase 0.002
cd05919436 cd05919, BCL_like, Benzoate CoA ligase (BCL) and s 0.002
TIGR02372386 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase 0.002
PRK12582624 PRK12582, PRK12582, acyl-CoA synthetase; Provision 0.002
cd05972430 cd05972, MACS_like, Medium-chain acyl-CoA syntheta 0.003
cd05958487 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) 0.003
cd05921559 cd05921, FCS, Feruloyl-CoA synthetase (FCS) 0.003
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis Back     alignment and domain information 
 Score =  743 bits (1920), Expect = 0.0
 Identities = 283/534 (52%), Positives = 363/534 (67%), Gaps = 20/534 (3%)

Query: 13  PLTPLGFIERAATACDDCPSIIYNDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAP 72
           PLTPL F+ERAA    D  +++Y D  YT+ +TY RC +LAS+LS  GI  G VV+V+AP
Sbjct: 3   PLTPLSFLERAAKVYPDRTAVVYGDRRYTYRETYDRCRRLASALSKLGIGKGDVVAVLAP 62

Query: 73  NIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLF 132
           N PAM E HF VPM+GA+   +NTRLDA  I+ IL HSE+K++FVD    SL  E ++L 
Sbjct: 63  NTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALALL 122

Query: 133 PPHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTYENMLAKGDPQFSWVRPKSDLDPM 192
                    +++       S                YE++LA GDP    + P  + DP+
Sbjct: 123 STKEIIDTEIIVISPAAEDSEEG------------DYEDLLAGGDPDPLPIPPDDEWDPI 170

Query: 193 VLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTLPMFHNNGWSFTWGAA 252
            LNYT GTT  PKGVV  ++  ++ A+ ++I+W +P + V LWTLPMFH NGW F W   
Sbjct: 171 SLNYTSGTTGNPKGVVYTHRGAYLNALGNVIEWGMPDRPVYLWTLPMFHCNGWCFPWAIT 230

Query: 253 VVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAKQ--LDRPVRILTAG 310
            VG T+VCLRK DAP ++ LI KH VTH+CGAP VLN+L+++PEA +  L RPVR++TAG
Sbjct: 231 AVGGTHVCLRKVDAPAIYDLIEKHKVTHLCGAPTVLNMLANAPEADKLPLPRPVRVMTAG 290

Query: 311 SPPPAPVLLRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTI 370
           +PPP  V+ + E LGF V+H YG TE  G    C WKP+W+ LPA ERA LKARQGVR +
Sbjct: 291 APPPPAVIKKMEELGFEVTHVYGLTETYGPITVCEWKPEWDALPAEERARLKARQGVRYV 350

Query: 371 GLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMKDGRYYTGDVGM 430
           GL EVD+VDPET   V RDG+T GEIVMRG ++M GY K+PEAT +    G +++GD+ +
Sbjct: 351 GLEEVDVVDPETMKDVPRDGKTIGEIVMRGNTVMKGYYKNPEATEEAFAGGWFHSGDLAV 410

Query: 431 MHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPCAFV 490
           +HPDGY+EIKDRSKD+IISGGENISS E+E VLY HP V EAAVV RPD  W E PCAFV
Sbjct: 411 VHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAFV 470

Query: 491 SLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVL 544
            LK G        TE+++I+YCR ++  + VPKTV F+ ELPKTATGK+QK+VL
Sbjct: 471 VLKPGAS-----VTEEELIEYCREKLAHFKVPKTVEFV-ELPKTATGKIQKFVL 518

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase Back     alignment and domain information
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional Back     alignment and domain information
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles Back     alignment and domain information
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles Back     alignment and domain information
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins Back     alignment and domain information
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD Back     alignment and domain information
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme Back     alignment and domain information
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I Back     alignment and domain information
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) Back     alignment and domain information
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) Back     alignment and domain information
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) Back     alignment and domain information
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) Back     alignment and domain information
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated Back     alignment and domain information
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis Back     alignment and domain information
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) Back     alignment and domain information
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase Back     alignment and domain information
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase Back     alignment and domain information
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated Back     alignment and domain information
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed Back     alignment and domain information
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) Back     alignment and domain information
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase Back     alignment and domain information
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase Back     alignment and domain information
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase Back     alignment and domain information
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) Back     alignment and domain information
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) Back     alignment and domain information
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) Back     alignment and domain information
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes Back     alignment and domain information
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated Back     alignment and domain information
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) Back     alignment and domain information
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase Back     alignment and domain information
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases Back     alignment and domain information
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like Back     alignment and domain information
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated Back     alignment and domain information
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) Back     alignment and domain information
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) Back     alignment and domain information
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) Back     alignment and domain information
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) Back     alignment and domain information
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase Back     alignment and domain information
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 Back     alignment and domain information
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) Back     alignment and domain information
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family Back     alignment and domain information
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA Back     alignment and domain information
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like Back     alignment and domain information
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) Back     alignment and domain information
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase Back     alignment and domain information
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) Back     alignment and domain information
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) Back     alignment and domain information
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) Back     alignment and domain information
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase Back     alignment and domain information
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) Back     alignment and domain information
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) Back     alignment and domain information
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes Back     alignment and domain information
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase Back     alignment and domain information
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes Back     alignment and domain information
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) Back     alignment and domain information
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain Back     alignment and domain information
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) Back     alignment and domain information
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional Back     alignment and domain information
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional Back     alignment and domain information
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS) Back     alignment and domain information
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional Back     alignment and domain information
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase Back     alignment and domain information
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed Back     alignment and domain information
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) Back     alignment and domain information
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional Back     alignment and domain information
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) Back     alignment and domain information
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional Back     alignment and domain information
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae Back     alignment and domain information
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase Back     alignment and domain information
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional Back     alignment and domain information
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional Back     alignment and domain information
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional Back     alignment and domain information
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi Back     alignment and domain information
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase Back     alignment and domain information
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents Back     alignment and domain information
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional Back     alignment and domain information
>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins Back     alignment and domain information
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein Back     alignment and domain information
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins Back     alignment and domain information
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 Back     alignment and domain information
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase Back     alignment and domain information
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated Back     alignment and domain information
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional Back     alignment and domain information
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases Back     alignment and domain information
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated Back     alignment and domain information
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase Back     alignment and domain information
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated Back     alignment and domain information
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase Back     alignment and domain information
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated Back     alignment and domain information
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated Back     alignment and domain information
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional Back     alignment and domain information
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) Back     alignment and domain information
>gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009) Back     alignment and domain information
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) Back     alignment and domain information
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase Back     alignment and domain information
>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated Back     alignment and domain information
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes Back     alignment and domain information
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated Back     alignment and domain information
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated Back     alignment and domain information
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) Back     alignment and domain information
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase Back     alignment and domain information
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) Back     alignment and domain information
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes Back     alignment and domain information
>gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive yellow protein activation family Back     alignment and domain information
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) Back     alignment and domain information
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) Back     alignment and domain information
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 558
KOG1176537 consensus Acyl-CoA synthetase [Lipid transport and 100.0
KOG1177596 consensus Long chain fatty acid acyl-CoA ligase [L 100.0
COG0365528 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l 100.0
COG0318534 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l 100.0
PLN03102579 acyl-activating enzyme; Provisional 100.0
PRK07788549 acyl-CoA synthetase; Validated 100.0
PTZ00237647 acetyl-CoA synthetase; Provisional 100.0
COG1021542 EntE Peptide arylation enzymes [Secondary metaboli 100.0
PLN02860563 o-succinylbenzoate-CoA ligase 100.0
PLN02654666 acetate-CoA ligase 100.0
TIGR02316628 propion_prpE propionate--CoA ligase. This family c 100.0
PRK07529632 AMP-binding domain protein; Validated 100.0
TIGR02188625 Ac_CoA_lig_AcsA acetate--CoA ligase. This model de 100.0
PRK13295547 cyclohexanecarboxylate-CoA ligase; Reviewed 100.0
PRK06839496 acyl-CoA synthetase; Validated 100.0
PRK13382537 acyl-CoA synthetase; Provisional 100.0
PRK03640483 O-succinylbenzoic acid--CoA ligase; Provisional 100.0
PLN02736651 long-chain acyl-CoA synthetase 100.0
PRK00174637 acetyl-CoA synthetase; Provisional 100.0
PRK08314546 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK06334539 long chain fatty acid--[acyl-carrier-protein] liga 100.0
PLN02246537 4-coumarate--CoA ligase 100.0
PRK06155542 crotonobetaine/carnitine-CoA ligase; Provisional 100.0
PLN02479567 acetate-CoA ligase 100.0
PLN02574560 4-coumarate--CoA ligase-like 100.0
PRK05605573 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK06187521 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK05677562 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK07656513 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK08162545 acyl-CoA synthetase; Validated 100.0
PRK04319570 acetyl-CoA synthetase; Provisional 100.0
PRK08316523 acyl-CoA synthetase; Validated 100.0
PRK07638487 acyl-CoA synthetase; Validated 100.0
PRK07008539 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK10524629 prpE propionyl-CoA synthetase; Provisional 100.0
PLN02614666 long-chain acyl-CoA synthetase 100.0
PRK07470528 acyl-CoA synthetase; Validated 100.0
TIGR01217652 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym 100.0
PRK05857540 acyl-CoA synthetase; Validated 100.0
PRK06145497 acyl-CoA synthetase; Validated 100.0
PRK07786542 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK06018542 putative acyl-CoA synthetase; Provisional 100.0
PRK03584655 acetoacetyl-CoA synthetase; Provisional 100.0
PLN02861660 long-chain-fatty-acid-CoA ligase 100.0
PRK05852534 acyl-CoA synthetase; Validated 100.0
PRK06060 705 acyl-CoA synthetase; Validated 100.0
PLN02330546 4-coumarate--CoA ligase-like 1 100.0
PRK06188524 acyl-CoA synthetase; Validated 100.0
TIGR02275527 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot 100.0
PRK07867529 acyl-CoA synthetase; Validated 100.0
PRK06087547 short chain acyl-CoA synthetase; Reviewed 100.0
PRK05620576 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK06164540 acyl-CoA synthetase; Validated 100.0
TIGR03208538 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. 100.0
PRK09274552 peptide synthase; Provisional 100.0
PRK08315559 AMP-binding domain protein; Validated 100.0
PRK07514504 malonyl-CoA synthase; Validated 100.0
PLN03052728 acetate--CoA ligase; Provisional 100.0
TIGR03098515 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor 100.0
PRK12583558 acyl-CoA synthetase; Provisional 100.0
PTZ00342746 acyl-CoA synthetase; Provisional 100.0
PRK09088488 acyl-CoA synthetase; Validated 100.0
PRK08008517 caiC putative crotonobetaine/carnitine-CoA ligase; 100.0
PRK13388540 acyl-CoA synthetase; Provisional 100.0
PRK07769631 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK10946536 entE enterobactin synthase subunit E; Provisional 100.0
PRK12492562 long-chain-fatty-acid--CoA ligase; Provisional 100.0
PRK08043718 bifunctional acyl-[acyl carrier protein] synthetas 100.0
PRK06178567 acyl-CoA synthetase; Validated 100.0
PRK13383516 acyl-CoA synthetase; Provisional 100.0
PRK06710563 long-chain-fatty-acid--CoA ligase; Validated 100.0
TIGR03443 1389 alpha_am_amid L-aminoadipate-semialdehyde dehydrog 100.0
PLN02387696 long-chain-fatty-acid-CoA ligase family protein 100.0
PRK07059557 Long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK08279600 long-chain-acyl-CoA synthetase; Validated 100.0
PRK12467 3956 peptide synthase; Provisional 100.0
TIGR03205541 pimA dicarboxylate--CoA ligase PimA. PimA, a membe 100.0
PRK05851525 long-chain-fatty-acid--[acyl-carrier-protein] liga 100.0
PRK086331146 2-acyl-glycerophospho-ethanolamine acyltransferase 100.0
PRK10252 1296 entF enterobactin synthase subunit F; Provisional 100.0
PRK08751560 putative long-chain fatty acyl CoA ligase; Provisi 100.0
TIGR01734502 D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig 100.0
PLN02430660 long-chain-fatty-acid-CoA ligase 100.0
PRK12476612 putative fatty-acid--CoA ligase; Provisional 100.0
TIGR02262508 benz_CoA_lig benzoate-CoA ligase family. Character 100.0
PRK08180614 feruloyl-CoA synthase; Reviewed 100.0
KOG1175626 consensus Acyl-CoA synthetase [Lipid transport and 100.0
PRK12467 3956 peptide synthase; Provisional 100.0
PRK12316 5163 peptide synthase; Provisional 100.0
PRK12316 5163 peptide synthase; Provisional 100.0
PRK07787471 acyl-CoA synthetase; Validated 100.0
PRK13390501 acyl-CoA synthetase; Provisional 100.0
PRK09029458 O-succinylbenzoic acid--CoA ligase; Provisional 100.0
COG1022613 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) 100.0
PRK08974560 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK07445452 O-succinylbenzoic acid--CoA ligase; Reviewed 100.0
PRK07798533 acyl-CoA synthetase; Validated 100.0
PRK04813503 D-alanine--poly(phosphoribitol) ligase subunit 1; 100.0
PTZ00216700 acyl-CoA synthetase; Provisional 100.0
PRK12406509 long-chain-fatty-acid--CoA ligase; Provisional 100.0
PRK056914334 peptide synthase; Validated 100.0
PRK05691 4334 peptide synthase; Validated 100.0
KOG1256691 consensus Long-chain acyl-CoA synthetases (AMP-for 100.0
PRK13391511 acyl-CoA synthetase; Provisional 100.0
PRK08276502 long-chain-fatty-acid--CoA ligase; Validated 100.0
PRK07868994 acyl-CoA synthetase; Validated 100.0
PRK12582624 acyl-CoA synthetase; Provisional 100.0
PRK068141140 acylglycerophosphoethanolamine acyltransferase; Pr 100.0
PLN03051499 acyl-activating enzyme; Provisional 100.0
PRK09192579 acyl-CoA synthetase; Validated 100.0
TIGR01923436 menE O-succinylbenzoate-CoA ligase. This model rep 100.0
PRK05850578 acyl-CoA synthetase; Validated 100.0
KOG1180678 consensus Acyl-CoA synthetase [Lipid transport and 100.0
PRK08308414 acyl-CoA synthetase; Validated 100.0
PRK07768545 long-chain-fatty-acid--CoA ligase; Validated 100.0
KOG1179649 consensus Very long-chain acyl-CoA synthetase/fatt 100.0
PF00501417 AMP-binding: AMP-binding enzyme; InterPro: IPR0008 100.0
TIGR01733408 AA-adenyl-dom amino acid adenylation domain. This 100.0
PRK07824358 O-succinylbenzoic acid--CoA ligase; Provisional 100.0
PTZ00297 1452 pantothenate kinase; Provisional 100.0
COG1020642 EntF Non-ribosomal peptide synthetase modules and 100.0
TIGR02372386 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv 100.0
TIGR02155422 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet 100.0
KOG1178 1032 consensus Non-ribosomal peptide synthetase/alpha-a 100.0
KOG36281363 consensus Predicted AMP-binding protein [General f 99.98
TIGR03335445 F390_ftsA coenzyme F390 synthetase. This enzyme, c 99.97
COG1541438 PaaK Coenzyme F390 synthetase [Coenzyme metabolism 99.96
TIGR03089227 conserved hypothetical protein TIGR03089. This pro 99.94
PRK09188365 serine/threonine protein kinase; Provisional 99.87
KOG3628 1363 consensus Predicted AMP-binding protein [General f 99.85
TIGR02304430 aden_form_hyp probable adenylate-forming enzyme. M 99.81
PF1319373 AMP-binding_C: AMP-binding enzyme C-terminal domai 99.26
PF04443365 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR 98.86
PF03321528 GH3: GH3 auxin-responsive promoter; InterPro: IPR0 98.45
PLN02249597 indole-3-acetic acid-amido synthetase 97.77
PLN02247606 indole-3-acetic acid-amido synthetase 97.73
PLN02620612 indole-3-acetic acid-amido synthetase 97.37
PF1453596 AMP-binding_C_2: AMP-binding enzyme C-terminal dom 97.37
COG1541438 PaaK Coenzyme F390 synthetase [Coenzyme metabolism 95.35
TIGR02155422 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet 88.74
TIGR03335445 F390_ftsA coenzyme F390 synthetase. This enzyme, c 87.76
TIGR03089227 conserved hypothetical protein TIGR03089. This pro 81.76
PRK07656513 long-chain-fatty-acid--CoA ligase; Validated 81.1
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-81  Score=628.70  Aligned_cols=518  Identities=42%  Similarity=0.680  Sum_probs=445.6

Q ss_pred             CCCCCCCCCCCChhhHHHHHhhcCCCC-ceEEECC---ccccHHHHHHHHHHHHHHHHhCC--CCCCCEEEEEcCCchhH
Q 008636            4 LKPNPANSCPLTPLGFIERAATACDDC-PSIIYND---TTYTWSQTYRRCLQLASSLSSFG--INPGHVVSVIAPNIPAM   77 (558)
Q Consensus         4 ~~~~~~~~~~~tl~~~l~~~a~~~p~~-~a~~~~~---~~~Ty~~l~~~v~~la~~L~~~G--v~~gd~V~i~~~~~~~~   77 (558)
                      +-..+.+....+....+.+.+..++++ +++++..   +.+||+|++.++.++|..|.++|  +++||+|++++||++++
T Consensus         6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~   85 (537)
T KOG1176|consen    6 LWKGPANNTPLTPITFLGRPAFVYLDRNTSLVYQDSDGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEF   85 (537)
T ss_pred             cccCcccCccccccccccccccccccCcceEEEecCCCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHH
Confidence            344556666667666777777666666 7777754   89999999999999999999876  89999999999999999


Q ss_pred             HHHHHHHhhcCcEEEeccccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCC
Q 008636           78 YELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPP  157 (558)
Q Consensus        78 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (558)
                      +.++|||+.+|+++.+++|.+.+.++...++.++++++|++.+..+.+.+......     ..++++.............
T Consensus        86 ~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~-----~~i~~l~~~~~~~~~~~~~  160 (537)
T KOG1176|consen   86 VELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLA-----LKIIVLTGDEGVISISDLV  160 (537)
T ss_pred             HHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcC-----CceEEEecccCcccccccc
Confidence            99999999999999999999999999999999999999999999999888766543     4455554431111100000


Q ss_pred             CCCCCCCchhhHHHhhcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhcccccccCCCCEEEEec
Q 008636          158 PRIPPADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWVVPKQSVLLWTL  237 (558)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (558)
                      ..      ...+..+...+.+..  ..+...+|++.++|||||||.||||.+||+++..+.......+.+...++.++.+
T Consensus       161 ~~------~~~~~~~~~~~~~~~--~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~~~~~~~v~l~~l  232 (537)
T KOG1176|consen  161 ED------LDAFEDLMPEGLPDG--IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLSIKIGWELTSDDVYLCTL  232 (537)
T ss_pred             cc------ccchhhccccCCCcc--cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHHhhhcccCCCCceEEEec
Confidence            00      111444444444443  4567889999999999999999999999999998888777777788899999999


Q ss_pred             CchhhhhhhHHHHHHHhcce-EEEecCCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCc--cccCCCCceEEEEecCCCC
Q 008636          238 PMFHNNGWSFTWGAAVVGAT-NVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP--EAKQLDRPVRILTAGSPPP  314 (558)
Q Consensus       238 p~~~~~g~~~~~~~l~~g~~-~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~--~~~~~~~l~~v~~~g~~l~  314 (558)
                      |++|.+|+..++.+++.|++ +++.+.++++.+++.+++|++|++.++|.++..|++.+  ....+++++.+.+||++++
T Consensus       233 Pl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~  312 (537)
T KOG1176|consen  233 PLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLS  312 (537)
T ss_pred             hHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCC
Confidence            99999999888886665555 44555679999999999999999999999999999975  6688999999999999999


Q ss_pred             hhhhHHhh-hcC-CeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCe
Q 008636          315 APVLLRTE-SLG-FIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQT  392 (558)
Q Consensus       315 ~~~~~~~~-~~~-~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~  392 (558)
                      +++.+++. +++ ..+.+.||+||+|+.++.+.+.+.          ...+++|.+.++. ...+.++ +|+.++++  +
T Consensus       313 ~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e----------~k~~svG~~~~g~-~~~v~~e-~g~~l~~~--~  378 (537)
T KOG1176|consen  313 PATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPE----------RKPGSVGRLLPGV-RVKVLDE-TGVSLGPN--Q  378 (537)
T ss_pred             HHHHHHHHHhCCCceEEEeeccccccCceeecCCCcc----------CcccccCccccce-EEEeeCC-CCCCCCCC--C
Confidence            99999998 566 899999999999988888764321          5678999999965 6666655 89999999  7


Q ss_pred             eeEEEEecccccccccCCchhhcccccC-CceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCcce
Q 008636          393 RGEIVMRGGSLMLGYLKDPEATSKCMKD-GRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNE  471 (558)
Q Consensus       393 ~Gel~v~~~~~~~gy~~~~~~~~~~~~~-g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~  471 (558)
                      .||||++|+.++.||++||+.|++.|.+ |||+|||+|++|+||+|++.+|++|+||.+|++|+|.|||++|..||.|.|
T Consensus       379 ~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~e  458 (537)
T KOG1176|consen  379 TGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLE  458 (537)
T ss_pred             ceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccE
Confidence            7999999999999999999999999976 999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeeeCCCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcchhHHHHHHHhhc
Q 008636          472 AAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANSM  551 (558)
Q Consensus       472 ~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~~~~  551 (558)
                      |+|++.+++..|+.++|+|+.+++..     ..+++|++++++++++|++|..++|+++||+|++||++|+.||+++.+.
T Consensus       459 aaVvgipDe~~Ge~p~A~VV~k~g~~-----lte~di~~~v~k~l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~~  533 (537)
T KOG1176|consen  459 AAVVGIPDEVWGETPAAFVVLKKGST-----LTEKDIIEYVRKKLPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKKL  533 (537)
T ss_pred             EEEEcccccccCCcceEEEEecCCCc-----CCHHHHHHHHHhhCChhhccCeEEEeccCCCCCcchHHHHHHHHHHHhc
Confidence            99999999999999999999998766     8999999999999999999999999999999999999999999999886


Q ss_pred             cc
Q 008636          552 SM  553 (558)
Q Consensus       552 ~~  553 (558)
                      ..
T Consensus       534 ~~  535 (537)
T KOG1176|consen  534 GS  535 (537)
T ss_pred             cc
Confidence            54

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] Back     alignment and domain information
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] Back     alignment and domain information
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PLN03102 acyl-activating enzyme; Provisional Back     alignment and domain information
>PRK07788 acyl-CoA synthetase; Validated Back     alignment and domain information
>PTZ00237 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PLN02860 o-succinylbenzoate-CoA ligase Back     alignment and domain information
>PLN02654 acetate-CoA ligase Back     alignment and domain information
>TIGR02316 propion_prpE propionate--CoA ligase Back     alignment and domain information
>PRK07529 AMP-binding domain protein; Validated Back     alignment and domain information
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase Back     alignment and domain information
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed Back     alignment and domain information
>PRK06839 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK13382 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>PLN02736 long-chain acyl-CoA synthetase Back     alignment and domain information
>PRK00174 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated Back     alignment and domain information
>PLN02246 4-coumarate--CoA ligase Back     alignment and domain information
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional Back     alignment and domain information
>PLN02479 acetate-CoA ligase Back     alignment and domain information
>PLN02574 4-coumarate--CoA ligase-like Back     alignment and domain information
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK08162 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK04319 acetyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK08316 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07638 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK10524 prpE propionyl-CoA synthetase; Provisional Back     alignment and domain information
>PLN02614 long-chain acyl-CoA synthetase Back     alignment and domain information
>PRK07470 acyl-CoA synthetase; Validated Back     alignment and domain information
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase Back     alignment and domain information
>PRK05857 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK06145 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK06018 putative acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK03584 acetoacetyl-CoA synthetase; Provisional Back     alignment and domain information
>PLN02861 long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>PRK05852 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK06060 acyl-CoA synthetase; Validated Back     alignment and domain information
>PLN02330 4-coumarate--CoA ligase-like 1 Back     alignment and domain information
>PRK06188 acyl-CoA synthetase; Validated Back     alignment and domain information
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase Back     alignment and domain information
>PRK07867 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK06087 short chain acyl-CoA synthetase; Reviewed Back     alignment and domain information
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK06164 acyl-CoA synthetase; Validated Back     alignment and domain information
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase Back     alignment and domain information
>PRK09274 peptide synthase; Provisional Back     alignment and domain information
>PRK08315 AMP-binding domain protein; Validated Back     alignment and domain information
>PRK07514 malonyl-CoA synthase; Validated Back     alignment and domain information
>PLN03052 acetate--CoA ligase; Provisional Back     alignment and domain information
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated Back     alignment and domain information
>PRK12583 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PTZ00342 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK09088 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated Back     alignment and domain information
>PRK13388 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK10946 entE enterobactin synthase subunit E; Provisional Back     alignment and domain information
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated Back     alignment and domain information
>PRK06178 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK13383 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase Back     alignment and domain information
>PLN02387 long-chain-fatty-acid-CoA ligase family protein Back     alignment and domain information
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK08279 long-chain-acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK12467 peptide synthase; Provisional Back     alignment and domain information
>TIGR03205 pimA dicarboxylate--CoA ligase PimA Back     alignment and domain information
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>PRK10252 entF enterobactin synthase subunit F; Provisional Back     alignment and domain information
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional Back     alignment and domain information
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 Back     alignment and domain information
>PLN02430 long-chain-fatty-acid-CoA ligase Back     alignment and domain information
>PRK12476 putative fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family Back     alignment and domain information
>PRK08180 feruloyl-CoA synthase; Reviewed Back     alignment and domain information
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] Back     alignment and domain information
>PRK12467 peptide synthase; Provisional Back     alignment and domain information
>PRK12316 peptide synthase; Provisional Back     alignment and domain information
>PRK12316 peptide synthase; Provisional Back     alignment and domain information
>PRK07787 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK13390 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] Back     alignment and domain information
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed Back     alignment and domain information
>PRK07798 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional Back     alignment and domain information
>PTZ00216 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional Back     alignment and domain information
>PRK05691 peptide synthase; Validated Back     alignment and domain information
>PRK05691 peptide synthase; Validated Back     alignment and domain information
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] Back     alignment and domain information
>PRK13391 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>PRK07868 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK12582 acyl-CoA synthetase; Provisional Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PLN03051 acyl-activating enzyme; Provisional Back     alignment and domain information
>PRK09192 acyl-CoA synthetase; Validated Back     alignment and domain information
>TIGR01923 menE O-succinylbenzoate-CoA ligase Back     alignment and domain information
>PRK05850 acyl-CoA synthetase; Validated Back     alignment and domain information
>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] Back     alignment and domain information
>PRK08308 acyl-CoA synthetase; Validated Back     alignment and domain information
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] Back     alignment and domain information
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] Back     alignment and domain information
>TIGR01733 AA-adenyl-dom amino acid adenylation domain Back     alignment and domain information
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional Back     alignment and domain information
>PTZ00297 pantothenate kinase; Provisional Back     alignment and domain information
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family Back     alignment and domain information
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase Back     alignment and domain information
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG3628 consensus Predicted AMP-binding protein [General function prediction only] Back     alignment and domain information
>TIGR03335 F390_ftsA coenzyme F390 synthetase Back     alignment and domain information
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] Back     alignment and domain information
>TIGR03089 conserved hypothetical protein TIGR03089 Back     alignment and domain information
>PRK09188 serine/threonine protein kinase; Provisional Back     alignment and domain information
>KOG3628 consensus Predicted AMP-binding protein [General function prediction only] Back     alignment and domain information
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme Back     alignment and domain information
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B Back     alignment and domain information
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria Back     alignment and domain information
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin Back     alignment and domain information
>PLN02249 indole-3-acetic acid-amido synthetase Back     alignment and domain information
>PLN02247 indole-3-acetic acid-amido synthetase Back     alignment and domain information
>PLN02620 indole-3-acetic acid-amido synthetase Back     alignment and domain information
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B Back     alignment and domain information
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] Back     alignment and domain information
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase Back     alignment and domain information
>TIGR03335 F390_ftsA coenzyme F390 synthetase Back     alignment and domain information
>TIGR03089 conserved hypothetical protein TIGR03089 Back     alignment and domain information
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query558
1ult_A541 Crystal Structure Of Tt0168 From Thermus Thermophil 2e-60
3r44_A517 Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas 3e-51
3a9u_A536 Crystal Structures And Enzymatic Mechanisms Of A Po 1e-37
3ivr_A509 Crystal Structure Of Putative Long-Chain-Fatty-Acid 1e-34
3tsy_A 979 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr 1e-32
4g37_A555 Structure Of Cross-Linked Firefly Luciferase In Sec 3e-31
3qya_A582 Crystal Structure Of A Red-Emitter Mutant Of Lampyr 6e-31
3ipl_A501 Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig 1e-30
4g36_A555 Photinus Pyralis Luciferase In The Adenylate-Formin 5e-30
1ba3_A550 Firefly Luciferase In Complex With Bromoform Length 6e-30
3iep_A551 Firefly Luciferase Apo Structure (P41 Form) Length 6e-30
3nyq_A505 Malonyl-Coa Ligase Ternary Product Complex With Met 6e-29
4fuq_A503 Crystal Structure Of Apo Matb From Rhodopseudomonas 2e-28
2d1t_A548 Crystal Structure Of The Thermostable Japanese Fire 3e-28
2d1q_A548 Crystal Structure Of The Thermostable Japanese Fire 4e-28
2d1s_A548 Crystal Structure Of The Thermostable Japanese Fire 5e-28
3g7s_A549 Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li 3e-27
2qvx_X504 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO 2e-26
2qvz_X504 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO 1e-25
3cw8_X504 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb 1e-25
3t5b_A396 Crystal Structure Of N-Terminal Domain Of Facl13 Fr 2e-25
1t5d_X504 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl 4e-25
4gxq_A506 Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer 4e-25
3dlp_X504 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, 5e-25
4gxr_A503 Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len 6e-25
1t5h_X504 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE 1e-24
4fut_A503 Crystal Structure Of Atp Bound Matb From Rhodopseud 3e-24
2wd9_A569 Crystal Structure Of Human Acyl-coa Synthetase Medi 9e-24
3b7w_A570 Crystal Structure Of Human Acyl-Coa Synthetase Medi 1e-23
3etc_A580 2.1 A Structure Of Acyl-Adenylate Synthetase From M 3e-22
3rg2_A617 Structure Of A Two-Domain Nrps Fusion Protein Conta 2e-20
1md9_A539 Crystal Structure Of Dhbe In Complex With Dhb And A 5e-19
1mdb_A539 Crystal Structure Of Dhbe In Complex With Dhb-adeny 6e-19
3o82_A544 Structure Of Base N-Terminal Domain From Acinetobac 7e-19
2p2b_A652 Acetyl-coa Synthetase, V386a Mutation Length = 652 1e-18
1pg3_A652 Acetyl Coa Synthetase, Acetylated On Lys609 Length 2e-18
2p2m_A652 Acetyl-Coa Synthetase, R194a Mutation Length = 652 3e-18
1ry2_A663 Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe 3e-18
2p2f_A652 Acetyl-coa Synthetase, Wild-type With Acetate, Amp, 3e-18
2v7b_A529 Crystal Structures Of A Benzoate Coa Ligase From Bu 7e-18
2p2j_A652 Acetyl-Coa Synthetase, K609a Mutation Length = 652 1e-17
2p2q_A652 Acetyl-Coa Synthetase, R584e Mutation Length = 652 1e-17
2p20_A652 Acetyl-Coa Synthetase, R584a Mutation Length = 652 2e-17
2vsq_A 1304 Structure Of Surfactin A Synthetase C (Srfa-C), A N 3e-17
4gr5_A570 Crystal Structure Of Slgn1deltaasub In Complex With 1e-14
1amu_A563 Phenylalanine Activating Domain Of Gramicidin Synth 7e-12
3vnq_A544 Co-crystal Structure Of Nrps Adenylation Protein Cy 2e-11
3e7w_A511 Crystal Structure Of Dlta: Implications For The Rea 2e-08
3l8c_A521 Structure Of Probable D-Alanine--Poly(Phosphoribito 1e-07
3fcc_A512 Crystal Structure Of Dlta Protein In Complex With A 2e-07
3dhv_A512 Crystal Structure Of Dlta Protein In Complex With D 2e-07
4dg8_A620 Structure Of Pa1221, An Nrps Protein Containing Ade 5e-06
3pbk_A583 Structural And Functional Studies Of Fatty Acyl-Ade 5e-06
3kxw_A590 The Crystal Structure Of Fatty Acid Amp Ligase From 4e-05
3ite_A562 The Third Adenylation Domain Of The Fungal Sidn Non 1e-04
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 Back     alignment and structure 
Iteration: 1

 Score =  230 bits (586), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 174/537 (32%), Positives = 262/537 (48%), Gaps = 40/537 (7%)
Query: 19  FIERAAT--ACDDCPSIIYNDTTY--TWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNI 74
           F+ERAA      +  S ++    +  T+++ Y+R  +L   L + G+  G  V+ +  N 
Sbjct: 23  FLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNH 82
Query: 75  PAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHXXXXXXXXXXXXFPP 134
               E +FAVP  GA+ +T N RL  + I+ IL H+E K++  D                
Sbjct: 83  FRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGEL-- 140
Query: 135 HSKTPKLVLITDDKEXXXXXXXXXXXXXADFVDTYENMLAKGDPQFSWVR-PKSDLDPMV 193
             KT +  ++ D+K                ++   E +  + DP    VR P+     M 
Sbjct: 141 --KTVQHFVVMDEK------------APEGYLAYEEALGEEADP----VRVPERAACGMA 182
Query: 194 LNYTWGTTSAPKGVVQCYKAFFIIAVD-SLIDW-VVPKQSVLLWTLPMFHNNGWSFTWGA 251
             YT GTT  PKGVV  ++A  + ++  SL+D   + ++ V+L  +PMFH N W   + A
Sbjct: 183 --YTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAA 240
Query: 252 AVVGATNVCLR-KFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEA--KQLDRPVRILT 308
            +VGA  V    + D  ++  L    GVT   G P V   L+   E+   +L    R++ 
Sbjct: 241 TLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVV 300
Query: 309 AGSPPPAPVLLRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVR 368
            GS  P  ++ R E +G  V  GYG TE + V V    K     L   E+ +LKA+ G+ 
Sbjct: 301 GGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGL- 359
Query: 369 TIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSKCMK-DGRYYTGD 427
            I L  + + D E G  V +DG+  GE+ ++G  +  GY  + EAT   +  DG + TGD
Sbjct: 360 PIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGD 418
Query: 428 VGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDPFWQEIPC 487
           + +   +GY+EIKDR KD+I SGGE ISS ++E+ L  HP V EAAVV  P P WQE P 
Sbjct: 419 IAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPL 478
Query: 488 AFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVL 544
           A V        G   T E+      +A   ++ +P   VF +E+P+T+ GK  K  L
Sbjct: 479 AVV-----VPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRAL 530
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 Back     alignment and structure
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 Back     alignment and structure
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 Back     alignment and structure
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 Back     alignment and structure
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 Back     alignment and structure
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 Back     alignment and structure
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 Back     alignment and structure
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 Back     alignment and structure
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 Back     alignment and structure
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 Back     alignment and structure
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 Back     alignment and structure
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 Back     alignment and structure
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 Back     alignment and structure
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 Back     alignment and structure
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 Back     alignment and structure
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 Back     alignment and structure
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 Back     alignment and structure
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 Back     alignment and structure
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 Back     alignment and structure
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 Back     alignment and structure
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 Back     alignment and structure
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 Back     alignment and structure
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 Back     alignment and structure
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 Back     alignment and structure
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 Back     alignment and structure
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 Back     alignment and structure
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 Back     alignment and structure
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 Back     alignment and structure
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 Back     alignment and structure
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 Back     alignment and structure
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 Back     alignment and structure
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 Back     alignment and structure
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 Back     alignment and structure
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 Back     alignment and structure
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 Back     alignment and structure
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 Back     alignment and structure
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 Back     alignment and structure
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 Back     alignment and structure
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 Back     alignment and structure
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 Back     alignment and structure
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 Back     alignment and structure
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 Back     alignment and structure
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 Back     alignment and structure
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 Back     alignment and structure
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 Back     alignment and structure
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 Back     alignment and structure
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511 Back     alignment and structure
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521 Back     alignment and structure
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512 Back     alignment and structure
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 Back     alignment and structure
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing Adenylation And Pcp Domains Length = 620 Back     alignment and structure
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583 Back     alignment and structure
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 Back     alignment and structure
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non- Ribosomal Peptide Synthetase Length = 562 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query558
1v25_A541 Long-chain-fatty-acid-COA synthetase; ligase, stru 0.0
3ipl_A501 2-succinylbenzoate--COA ligase; structural genomic 1e-162
3r44_A517 Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s 1e-159
3ivr_A509 Putative long-chain-fatty-acid COA ligase; structu 1e-157
1t5h_X504 4-chlorobenzoyl COA ligase; adenylate-forming coen 1e-137
4fuq_A503 Malonyl COA synthetase; ANL superfamily, methylma 1e-130
2v7b_A529 Benzoate-coenzyme A ligase; benzoate oxidation, be 1e-125
3rg2_A617 Enterobactin synthase component E (ENTE), 2,3-DIH 1e-121
3o83_A544 Peptide arylation enzyme; ligase, adenylation of 2 1e-119
1mdb_A539 2,3-dihydroxybenzoate-AMP ligase; adenylation doma 1e-119
3nyq_A505 Malonyl-COA ligase; A/B topology ababa sandwich be 1e-117
2d1s_A548 Luciferase, luciferin 4-monooxygenase; alpha/beta, 1e-116
3rix_A550 Luciferase, luciferin 4-monooxygenase; oxidoreduct 1e-115
3ni2_A536 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy 1e-115
3g7s_A549 Long-chain-fatty-acid--COA ligase (FADD-1); protei 1e-114
3tsy_A 979 Fusion protein 4-coumarate--COA ligase 1, resvera 1e-100
3c5e_A570 Acyl-coenzyme A synthetase ACSM2A, mitochondrial; 2e-90
3etc_A580 AMP-binding protein; adenylate-forming acyl-COA sy 3e-74
3kxw_A590 Saframycin MX1 synthetase B; fatty acid AMP ligase 3e-37
3gqw_A576 Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen 1e-36
3ite_A562 SIDN siderophore synthetase; ligase, non-ribosomal 6e-26
1ry2_A663 Acetyl-coenzyme A synthetase 1, acyl-activating en 5e-25
3e7w_A511 D-alanine--poly(phosphoribitol) ligase subunit 1; 3e-24
3fce_A512 D-alanine--poly(phosphoribitol) ligase subunit 1; 4e-24
2vsq_A 1304 Surfactin synthetase subunit 3; ligase, peptidyl c 7e-24
3l8c_A521 D-alanine--poly(phosphoribitol) ligase subunit 1; 8e-24
1pg4_A652 Acetyl-COA synthetase; AMP-forming, adenylate-form 9e-24
1amu_A563 GRSA, gramicidin synthetase 1; peptide synthetase, 5e-22
3t5a_A480 Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C 6e-22
4dg8_A620 PA1221; ANL superfamily, adenylation domain, pepti 5e-21
3hgu_A369 EHPF; phenazine, antibiotic, biosynthetic protein; 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
3qov_A436 Phenylacetate-coenzyme A ligase; acetyl-COA synthe 3e-07
2y4o_A443 Phenylacetate-coenzyme A ligase; phenylacetic acid 4e-07
2y27_A437 Phenylacetate-coenzyme A ligase; phenylacetic acid 7e-07
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 Back     alignment and structure
 Score =  638 bits (1647), Expect = 0.0
 Identities = 172/559 (30%), Positives = 261/559 (46%), Gaps = 38/559 (6%)

Query: 6   PNPANSCPLTPLGFIERAATACDDCPSIIYNDT----TYTWSQTYRRCLQLASSLSSFGI 61
           P+      L    F+ERAA        +    T      T+++ Y+R  +L   L + G+
Sbjct: 10  PSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGV 69

Query: 62  NPGHVVSVIAPNIPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHLS 121
             G  V+ +  N     E +FAVP  GA+ +T N RL  + I+ IL H+E K++  D   
Sbjct: 70  GVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFD--- 126

Query: 122 SSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTYENMLAKGDPQFS 181
              LL +V       KT +  ++ D+K             P  ++  YE  L +      
Sbjct: 127 -PNLLPLVEAIRGELKTVQHFVVMDEKA------------PEGYLA-YEEALGEEADPVR 172

Query: 182 WVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFI--IAVDSLIDWVVPKQSVLLWTLPM 239
                 +     + YT GTT  PKGVV  ++A  +  +A   +    + ++ V+L  +PM
Sbjct: 173 V----PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPM 228

Query: 240 FHNNGWSFTWGAAVVGATNVCL-RKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEAK 298
           FH N W   + A +VGA  V    + D  ++  L    GVT   G P V   L+   E+ 
Sbjct: 229 FHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST 288

Query: 299 Q--LDRPVRILTAGSPPPAPVLLRTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPAR 356
              L    R++  GS  P  ++ R E +G  V  GYG TE + V V    K     L   
Sbjct: 289 GHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEE 348

Query: 357 ERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGGSLMLGYLKDPEATSK 416
           E+ +LKA+ G+    +  + + D E G  V +DG+  GE+ ++G  +  GY  + EAT  
Sbjct: 349 EKLTLKAKTGLPIPLV-RLRVADEE-GRPVPKDGKALGEVQLKGPWITGGYYGNEEATRS 406

Query: 417 CM-KDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVV 475
            +  DG + TGD+ +   +GY+EIKDR KD+I SGGE ISS ++E+ L  HP V EAAVV
Sbjct: 407 ALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVV 466

Query: 476 GRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTA 535
             P P WQE P A V  +     G   T E+      +A   ++ +P   VF +E+P+T+
Sbjct: 467 AIPHPKWQERPLAVVVPR-----GEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTS 521

Query: 536 TGKVQKYVLGDIANSMSMS 554
            GK  K  L +   +    
Sbjct: 522 AGKFLKRALREQYKNYYGG 540
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 Back     alignment and structure
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 Back     alignment and structure
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 Back     alignment and structure
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 Back     alignment and structure
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 Back     alignment and structure
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 Back     alignment and structure
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 Back     alignment and structure
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 Back     alignment and structure
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 Back     alignment and structure
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 Back     alignment and structure
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 Back     alignment and structure
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 Back     alignment and structure
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 Back     alignment and structure
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 Back     alignment and structure
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 Back     alignment and structure
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 Back     alignment and structure
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 Back     alignment and structure
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 Back     alignment and structure
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 Back     alignment and structure
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 Back     alignment and structure
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 Back     alignment and structure
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 Back     alignment and structure
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 Back     alignment and structure
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 Back     alignment and structure
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 Back     alignment and structure
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 Back     alignment and structure
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 Back     alignment and structure
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 Back     alignment and structure
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436 Back     alignment and structure
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443 Back     alignment and structure
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query558
3ni2_A536 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy 100.0
3g7s_A549 Long-chain-fatty-acid--COA ligase (FADD-1); protei 100.0
1v25_A541 Long-chain-fatty-acid-COA synthetase; ligase, stru 100.0
3r44_A517 Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s 100.0
1mdb_A539 2,3-dihydroxybenzoate-AMP ligase; adenylation doma 100.0
4fuq_A503 Malonyl COA synthetase; ANL superfamily, methylma 100.0
1t5h_X504 4-chlorobenzoyl COA ligase; adenylate-forming coen 100.0
3ivr_A509 Putative long-chain-fatty-acid COA ligase; structu 100.0
3o83_A544 Peptide arylation enzyme; ligase, adenylation of 2 100.0
3etc_A580 AMP-binding protein; adenylate-forming acyl-COA sy 100.0
2d1s_A548 Luciferase, luciferin 4-monooxygenase; alpha/beta, 100.0
3rix_A550 Luciferase, luciferin 4-monooxygenase; oxidoreduct 100.0
3fce_A512 D-alanine--poly(phosphoribitol) ligase subunit 1; 100.0
3c5e_A570 Acyl-coenzyme A synthetase ACSM2A, mitochondrial; 100.0
1pg4_A652 Acetyl-COA synthetase; AMP-forming, adenylate-form 100.0
3e7w_A511 D-alanine--poly(phosphoribitol) ligase subunit 1; 100.0
3ipl_A501 2-succinylbenzoate--COA ligase; structural genomic 100.0
3rg2_A617 Enterobactin synthase component E (ENTE), 2,3-DIH 100.0
1ry2_A663 Acetyl-coenzyme A synthetase 1, acyl-activating en 100.0
1amu_A563 GRSA, gramicidin synthetase 1; peptide synthetase, 100.0
4gr5_A570 Non-ribosomal peptide synthetase; MBTH-like domain 100.0
2v7b_A529 Benzoate-coenzyme A ligase; benzoate oxidation, be 100.0
3l8c_A521 D-alanine--poly(phosphoribitol) ligase subunit 1; 100.0
4dg8_A620 PA1221; ANL superfamily, adenylation domain, pepti 100.0
3tsy_A 979 Fusion protein 4-coumarate--COA ligase 1, resvera 100.0
3nyq_A505 Malonyl-COA ligase; A/B topology ababa sandwich be 100.0
3ite_A562 SIDN siderophore synthetase; ligase, non-ribosomal 100.0
3kxw_A590 Saframycin MX1 synthetase B; fatty acid AMP ligase 100.0
2vsq_A 1304 Surfactin synthetase subunit 3; ligase, peptidyl c 100.0
3gqw_A576 Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen 100.0
3t5a_A480 Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C 100.0
4gs5_A358 Acyl-COA synthetase (AMP-forming)/AMP-acid ligase 100.0
3qov_A436 Phenylacetate-coenzyme A ligase; acetyl-COA synthe 100.0
2y4o_A443 Phenylacetate-coenzyme A ligase; phenylacetic acid 100.0
2y27_A437 Phenylacetate-coenzyme A ligase; phenylacetic acid 100.0
3hgu_A369 EHPF; phenazine, antibiotic, biosynthetic protein; 99.96
3gxs_A109 Phenylacetate-coenzyme A ligase; APC62324.1, struc 99.49
3lax_A109 Phenylacetate-coenzyme A ligase; structural genomi 99.47
4eql_A581 4-substituted benzoates-glutamate ligase GH3.12; f 98.81
4b2g_A609 GH3-1 auxin conjugating enzyme; signaling protein, 98.77
4epl_A581 Jasmonic acid-amido synthetase JAR1; ANL adenylati 98.75
3qov_A436 Phenylacetate-coenzyme A ligase; acetyl-COA synthe 92.48
2y27_A437 Phenylacetate-coenzyme A ligase; phenylacetic acid 92.18
2y4o_A443 Phenylacetate-coenzyme A ligase; phenylacetic acid 92.04
1mdb_A539 2,3-dihydroxybenzoate-AMP ligase; adenylation doma 83.63
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Back     alignment and structure
Probab=100.00  E-value=1.8e-80  Score=647.61  Aligned_cols=503  Identities=28%  Similarity=0.385  Sum_probs=435.4

Q ss_pred             CCChhhHHHHHhhcCCCCceEEEC--CccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcE
Q 008636           13 PLTPLGFIERAATACDDCPSIIYN--DTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAI   90 (558)
Q Consensus        13 ~~tl~~~l~~~a~~~p~~~a~~~~--~~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~   90 (558)
                      .+|+.++|.++++++|+++|+++.  ++++||+||.+++.++|++|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus        21 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav  100 (536)
T 3ni2_A           21 NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAI  100 (536)
T ss_dssp             SCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred             CCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCE
Confidence            589999999999999999999985  579999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccccCChHHHHHHHhhcCccEEEEeCcChHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCCCCchhhHH
Q 008636           91 FNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTYE  170 (558)
Q Consensus        91 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (558)
                      ++|++|.++.+++.++++.++++++|++.+....+.+.....     ...++.++....               ....+.
T Consensus       101 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---------------~~~~~~  160 (536)
T 3ni2_A          101 ITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-----DVKVMCVDSAPD---------------GCLHFS  160 (536)
T ss_dssp             EEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-----TCEEEESSCCCT---------------TCEETH
T ss_pred             EeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-----CceEEEecCCCC---------------CccCHH
Confidence            999999999999999999999999999988777776654432     123333322110               023344


Q ss_pred             HhhcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhccc----ccccCCCCEEEEecCchhhhhh-
Q 008636          171 NMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDSLI----DWVVPKQSVLLWTLPMFHNNGW-  245 (558)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~g~-  245 (558)
                      ++........ ......++++++|+|||||||.||+|.++|+++.........    .+.+.+++++++.+|++|..++ 
T Consensus       161 ~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~  239 (536)
T 3ni2_A          161 ELTQADENEA-PQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALN  239 (536)
T ss_dssp             HHHTSCGGGC-CCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHH
T ss_pred             HHhhcccccc-ccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHH
Confidence            4443322211 223456889999999999999999999999999876654432    4567889999999999999998 


Q ss_pred             hHHHHHHHhcceEEEecCCCHHHHHHHHHHhCCcEEEehHHHHHHHhcCc--cccCCCCceEEEEecCCCChhhhHHhh-
Q 008636          246 SFTWGAAVVGATNVCLRKFDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP--EAKQLDRPVRILTAGSPPPAPVLLRTE-  322 (558)
Q Consensus       246 ~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~--~~~~~~~l~~v~~~g~~l~~~~~~~~~-  322 (558)
                      ..++.++..|+++++.+.+++..+++.++++++|++.++|+++..+++..  ....++++|.+++||+++++++.+.++ 
T Consensus       240 ~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~  319 (536)
T 3ni2_A          240 SIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRA  319 (536)
T ss_dssp             HTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHH
T ss_pred             HHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHH
Confidence            45788899999999999999999999999999999999999999999876  455688999999999999999999998 


Q ss_pred             hc-CCeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCCCCCeeeEEEEecc
Q 008636          323 SL-GFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGG  401 (558)
Q Consensus       323 ~~-~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~v~~~  401 (558)
                      .+ ++++++.||+||++++++.+.....      .......+++|.|.++. +++|+|++++.+++.|  +.|||+|+|+
T Consensus       320 ~~~~~~l~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~  390 (536)
T 3ni2_A          320 KFPQARLGQGYGMTEAGPVLAMCLAFAK------EPFDIKPGACGTVVRNA-EMKIVDPETGASLPRN--QPGEICIRGD  390 (536)
T ss_dssp             HCTTSEEEEEEECGGGSSEEEECGGGSS------SCCCCCTTCCCEECSSC-EEEEECTTTCCBCCTT--CCEEEEEEST
T ss_pred             HCCCCCccccccccccchhhhcccccCC------ccccCCCCCeeEeCCCc-EEEEEeCCCCcCCCCC--CccEEEEeCc
Confidence            45 8999999999999987665532111      01122346789999998 9999998889999988  8899999999


Q ss_pred             cccccccCCchhhcccc-cCCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHHhcCCCcceeEEEeeeCC
Q 008636          402 SLMLGYLKDPEATSKCM-KDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAVVGRPDP  480 (558)
Q Consensus       402 ~~~~gy~~~~~~~~~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~  480 (558)
                      +++.|||++|+.+...| .+|||+|||+|++++||++++.||+||+||++|++|+|.+||+.|.++|+|.+++|++.+++
T Consensus       391 ~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~  470 (536)
T 3ni2_A          391 QIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDE  470 (536)
T ss_dssp             TSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEET
T ss_pred             ccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecC
Confidence            99999999999999988 68999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcchhHHHHHHHhh
Q 008636          481 FWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYVLGDIANS  550 (558)
Q Consensus       481 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~r~~l~~~~~~  550 (558)
                      ..|+.++++|+..++..     .+.++++++++++|+.|++|+.++++++||+|++||++|++|++++++
T Consensus       471 ~~g~~~~a~vv~~~~~~-----~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~  535 (536)
T 3ni2_A          471 DAGEVPVAFVVKSEKSQ-----ATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG  535 (536)
T ss_dssp             TTEEEEEEEEEECTTCC-----CCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred             CCCceeEEEEEecCCCC-----CCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence            99999999999887655     788999999999999999999999999999999999999999998865
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Back     alignment and structure
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Back     alignment and structure
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Back     alignment and structure
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Back     alignment and structure
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* Back     alignment and structure
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Back     alignment and structure
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 Back     alignment and structure
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* Back     alignment and structure
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Back     alignment and structure
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Back     alignment and structure
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A Back     alignment and structure
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Back     alignment and structure
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Back     alignment and structure
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Back     alignment and structure
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Back     alignment and structure
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Back     alignment and structure
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Back     alignment and structure
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Back     alignment and structure
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Back     alignment and structure
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A Back     alignment and structure
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Back     alignment and structure
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Back     alignment and structure
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Back     alignment and structure
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Back     alignment and structure
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Back     alignment and structure
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Back     alignment and structure
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Back     alignment and structure
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Back     alignment and structure
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Back     alignment and structure
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} Back     alignment and structure
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Back     alignment and structure
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Back     alignment and structure
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Back     alignment and structure
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Back     alignment and structure
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} Back     alignment and structure
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* Back     alignment and structure
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} Back     alignment and structure
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} Back     alignment and structure
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Back     alignment and structure
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Back     alignment and structure
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Back     alignment and structure
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 558
d1pg4a_643 e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en 1e-113
d1v25a_534 e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 1e-111
d1lcia_541 e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali 1e-100
d1ry2a_640 e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast 1e-98
d1amua_514 e.23.1.1 (A:) Phenylalanine activating domain of g 2e-86
d1mdba_536 e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B 1e-83
d3cw9a1503 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc 7e-81
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  348 bits (894), Expect = e-113
 Identities = 116/555 (20%), Positives = 202/555 (36%), Gaps = 41/555 (7%)

Query: 20  IERAATACDDCPSIIY------NDTTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPN 73
           ++R      D  +II+           ++ + +R   + A++L   GI  G VV++  P 
Sbjct: 78  LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 137

Query: 74  IPAMYELHFAVPMSGAIFNTINTRLDARTISIILKHSESKLVFVDHLSSSLLLEVVSLFP 133
           +P       A    GA+ + I        ++  +  S S+LV            +     
Sbjct: 138 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKN 197

Query: 134 PHSKTPKLVLITDDKEISSSSSPPPRIPPADFVDTYENMLAKGDPQFSWVRPKSDLDPMV 193
                    + + +  I    +             + +++ K  P+       ++ DP+ 
Sbjct: 198 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAE-DPLF 256

Query: 194 LNYTWGTTSAPKGVVQCYKAFFIIAVDSLIDWV-VPKQSVLLWTLPMFHNNGWSFT-WGA 251
           + YT G+T  PKGV+     + + A  +           +   T  +    G S+  +G 
Sbjct: 257 ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGP 316

Query: 252 AVVGATNVCLRK----FDAPTVFALIRKHGVTHMCGAPIVLNLLSSSPEA--KQLDRP-V 304
              GAT +             +  ++ KH V  +  AP  +  L +  +   +  DR  +
Sbjct: 317 LACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSL 376

Query: 305 RILTAGSPPPAPVLL-----RTESLGFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERA 359
           RIL +   P  P        +       V   + +TE  G  ++          P     
Sbjct: 377 RILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT----------PLPGAI 426

Query: 360 SLKARQGVRTIGLTEVDIVDPETGLSVKRDGQTRGEIVMRGG--SLMLGYLKDPEATSKC 417
            LKA    R     +  +VD E      ++G T G +V+             D E   + 
Sbjct: 427 ELKAGSATRPFFGVQPALVDNEGHP---QEGATEGNLVITDSWPGQARTLFGDHERFEQT 483

Query: 418 ---MKDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVLYSHPMVNEAAV 474
                   Y++GD      DGY  I  R  DV+   G  + + EIES L +HP + EAAV
Sbjct: 484 YFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAV 543

Query: 475 VGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKT 534
           VG P     +   A+V+L  G +         ++  + R  I     P  + + D LPKT
Sbjct: 544 VGIPHAIKGQAIYAYVTLNHGEEPSP--ELYAEVRNWVRKEIGPLATPDVLHWTDSLPKT 601

Query: 535 ATGKVQKYVLGDIAN 549
            +GK+ + +L  IA 
Sbjct: 602 RSGKIMRRILRKIAA 616
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 Back     information, alignment and structure
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 Back     information, alignment and structure
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 Back     information, alignment and structure
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 Back     information, alignment and structure
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 Back     information, alignment and structure
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query558
d1pg4a_643 Acetyl-CoA synthetase {Salmonella enterica [TaxId: 100.0
d1v25a_534 Long chain fatty acid-CoA ligase TT0168 {Thermus t 100.0
d1lcia_541 Luciferase {Firefly (Photinus pyralis) [TaxId: 705 100.0
d1ry2a_640 Acetyl-CoA synthetase {Baker's yeast (Saccharomyce 100.0
d1amua_514 Phenylalanine activating domain of gramicidin synt 100.0
d1mdba_536 Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil 100.0
d3cw9a1503 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId 100.0
d1lcia_ 541 Luciferase {Firefly (Photinus pyralis) [TaxId: 705 84.9
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=5.5e-77  Score=629.47  Aligned_cols=509  Identities=21%  Similarity=0.300  Sum_probs=420.1

Q ss_pred             hHHHHHhhcCCCCceEEECC------ccccHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhHHHHHHHHhhcCcEE
Q 008636           18 GFIERAATACDDCPSIIYND------TTYTWSQTYRRCLQLASSLSSFGINPGHVVSVIAPNIPAMYELHFAVPMSGAIF   91 (558)
Q Consensus        18 ~~l~~~a~~~p~~~a~~~~~------~~~Ty~~l~~~v~~la~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~   91 (558)
                      .+|+++++.+||++|+++.+      +++||+||.+++.++|++|+++|+++||+|+++++|++++++++|||+++|+++
T Consensus        76 n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~  155 (643)
T d1pg4a_          76 NCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVH  155 (643)
T ss_dssp             HHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEE
T ss_pred             HHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeEE
Confidence            45778888899999999742      579999999999999999999999999999999999999999999999999999


Q ss_pred             EeccccCChHHHHHHHhhcCccEEEEeCcC---------hHHHHHHhhcCCCCCCCCcEEEEcCCccccCCCCCCCCCCC
Q 008636           92 NTINTRLDARTISIILKHSESKLVFVDHLS---------SSLLLEVVSLFPPHSKTPKLVLITDDKEISSSSSPPPRIPP  162 (558)
Q Consensus        92 v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (558)
                      +|+++.++.+.+..++++++++++|++++.         ...+.+.+... .......++.+.........       ..
T Consensus       156 v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~-------~~  227 (643)
T d1pg4a_         156 SVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNP-NVTSVEHVIVLKRTGSDIDW-------QE  227 (643)
T ss_dssp             EECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTST-TCCSCCEEEEECSSCCCCCC-------CB
T ss_pred             EecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhcc-ccccceEEEEeccCCccccc-------cc
Confidence            999999999999999999999999997642         23333333321 22234555555443321110       00


Q ss_pred             CCchhhHHHhhcCCCCCCCCCCCCCCCCceEEEccCCCCCCCceeeecHHHHHHHHHhc-ccccccCCCCEEEEecCchh
Q 008636          163 ADFVDTYENMLAKGDPQFSWVRPKSDLDPMVLNYTWGTTSAPKGVVQCYKAFFIIAVDS-LIDWVVPKQSVLLWTLPMFH  241 (558)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pk~v~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~  241 (558)
                       .....+............ ....+++++++|+|||||||.||+|+++|++++...... ...+.+.++|++++..|++|
T Consensus       228 -~~~~~~~~~~~~~~~~~~-~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~  305 (643)
T d1pg4a_         228 -GRDLWWRDLIEKASPEHQ-PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGW  305 (643)
T ss_dssp             -TTEEEHHHHHTTSCSCCC-CCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTS
T ss_pred             -ccchhhhhhhcccCcccC-CCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHH
Confidence             012233333333333222 234678999999999999999999999999976555443 44567899999999999999


Q ss_pred             hhhhh-HHHHHHHhcceEEEecC----CCHHHHHHHHHHhCCcEEEehHHHHHHHhcCc----cccCCCCceEEEEecCC
Q 008636          242 NNGWS-FTWGAAVVGATNVCLRK----FDAPTVFALIRKHGVTHMCGAPIVLNLLSSSP----EAKQLDRPVRILTAGSP  312 (558)
Q Consensus       242 ~~g~~-~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~----~~~~~~~l~~v~~~g~~  312 (558)
                      +.|+. .++.+++.|+++++.+.    +++..+++.++++++|+++++|++++.|++..    ...++++||.++++|++
T Consensus       306 ~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~p  385 (643)
T d1pg4a_         306 VTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEP  385 (643)
T ss_dssp             HHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSC
T ss_pred             HHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCC
Confidence            99975 57788999999999764    47899999999999999999999999998775    34467899999999999


Q ss_pred             CChhhhHHhh-hc---CCeeeecccCCCCCCcccccCCCCCCCCCChhhhhhhcccCCceecccceeeEeCCCCCcccCC
Q 008636          313 PPAPVLLRTE-SL---GFIVSHGYGKTEIAGVNVSCAWKPKWNKLPARERASLKARQGVRTIGLTEVDIVDPETGLSVKR  388 (558)
Q Consensus       313 l~~~~~~~~~-~~---~~~v~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~  388 (558)
                      +++++++++. .+   ++++++.||+||+|+++......         ......+++|.|.+++ +++|+|+ +|++++.
T Consensus       386 l~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~---------~~~~~~gs~G~p~~g~-~v~ivd~-~g~~~~~  454 (643)
T d1pg4a_         386 INPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPG---------AIELKAGSATRPFFGV-QPALVDN-EGHPQEG  454 (643)
T ss_dssp             CCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTT---------TCCBCTTCCBSBCTTC-CEEEECT-TCCBCCS
T ss_pred             CCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCC---------ccCCCCCccccccCCC-EEEEECC-CCCCCCC
Confidence            9999999887 44   57899999999999876653311         1122356899999998 9999998 6888888


Q ss_pred             CCCeeeEEEEecc--cccccccCCchhhcccc---cCCceeeCceeEEccCCcEEEecccCCeeeeCceeechHHHHHHH
Q 008636          389 DGQTRGEIVMRGG--SLMLGYLKDPEATSKCM---KDGRYYTGDVGMMHPDGYLEIKDRSKDVIISGGENISSTEIESVL  463 (558)
Q Consensus       389 ~~~~~Gel~v~~~--~~~~gy~~~~~~~~~~~---~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l  463 (558)
                      +  +.|||+|+|+  +++.|||++++.+...+   .+|||+|||+|++|+||+|++.||+||+||++|++|+|.+||++|
T Consensus       455 g--~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l  532 (643)
T d1pg4a_         455 A--TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL  532 (643)
T ss_dssp             S--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHH
T ss_pred             C--ceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHH
Confidence            7  8899999994  78899999998776554   589999999999999999999999999999999999999999999


Q ss_pred             hcCCCcceeEEEeeeCCCCCceeEEEEEecCCCCCCCCCCCHHHHHHHHHhcCCCccccCeEEEecccCCCCCCcchhHH
Q 008636          464 YSHPMVNEAAVVGRPDPFWQEIPCAFVSLKTGTDSGGMMTTEKDIIQYCRARIPRYMVPKTVVFIDELPKTATGKVQKYV  543 (558)
Q Consensus       464 ~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~GK~~r~~  543 (558)
                      .+||+|.+|+|++.+++..|+.++++|+++++....+  ...++|+++++++|+++++|+.|+++++||+|++||++|++
T Consensus       533 ~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~~~--~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R~~  610 (643)
T d1pg4a_         533 VAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSP--ELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRI  610 (643)
T ss_dssp             HHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCH--HHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHH
T ss_pred             HhCCCcceEEEEEEECCCCCeEEEEEEEECCCCCCCH--HHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCccHHH
Confidence            9999999999999999999999999999988754110  12357999999999999999999999999999999999999


Q ss_pred             HHHHHhhc
Q 008636          544 LGDIANSM  551 (558)
Q Consensus       544 l~~~~~~~  551 (558)
                      ||+++...
T Consensus       611 Lr~~~~~~  618 (643)
T d1pg4a_         611 LRKIAAGD  618 (643)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHhcCC
Confidence            99999764
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Back     information, alignment and structure
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Back     information, alignment and structure
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Back     information, alignment and structure
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Back     information, alignment and structure