Citrus Sinensis ID: 008653

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------56
MSLNSIIWSSYIMFSSRFSILPVQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQSLIKF
ccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccHHHHHHccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccccc
cccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHccccHEEEEHHHHHHHHHHHHHccccccccccccccccccHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHHHHHHHHccccc
MSLNSIIWSSYImfssrfsilpvqnlpfiENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLmqkiiphgpsealagasgdelESDYEQIKQCVEKDCKFLLDISsaensglhvFDFLANSILKEVLSAIqkgkpgafspgrptqFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAaslapvqnsnsnqgnsqALTLKQSVTLLDSMkscwrqdvfllpcsdKFLRLSLQLLSRYSNWLSSGLaarssghasfnpgnewaisaapddfiyIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITAtyrmtnkplpvrhspyvsgvlrpLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAqrragassdvsdhnvsdtDKICMQLFLDIQEYGRSLAALgvqaadippyrslwqcvapsdrqslikf
MSLNSIIWSSYIMFSSRFSILPVQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQkgkpgafspgrpTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQnsnsnqgnsQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGItatyrmtnkplpvrhspyvsgVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQgaqrragassdvsdhnvsDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVApsdrqslikf
MSLNSIIWSSYIMFSSRFSILPVQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIagaldsaltaaslaPVqnsnsnqgnsqALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFlrlslqllsrYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQSLIKF
****SIIWSSYIMFSSRFSILPVQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPH*****************YEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGK***F****PTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTA********************LKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARS*GHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVAR******************************TDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVA**********
******I*SSYIMFSSRFSILPVQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKII*****************SDYEQIKQCVEKDCKFLLDISSA*NSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTA****************QALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSS***********************PDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRM*****PVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARK*******************************KICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSD*******
MSLNSIIWSSYIMFSSRFSILPVQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPV*********SQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSL*********************VSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQSLIKF
*SLNSIIWSSYIMFSSRFSILPVQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAA*************NSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAAR*************AISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIR*G***************VSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQS****
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MSLNSIIWSSYIMFSSRFSILPVQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQSLIKF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query558 2.2.26 [Sep-21-2011]
Q921L5731 Conserved oligomeric Golg yes no 0.921 0.703 0.269 1e-53
Q14746738 Conserved oligomeric Golg yes no 0.931 0.704 0.269 2e-53
Q54UC2904 Conserved oligomeric Golg yes no 0.715 0.441 0.262 1e-39
Q9VF78710 Conserved oligomeric Golg yes no 0.818 0.643 0.28 4e-37
Q21444681 Conserved oligomeric Golg yes no 0.641 0.525 0.195 2e-08
>sp|Q921L5|COG2_MOUSE Conserved oligomeric Golgi complex subunit 2 OS=Mus musculus GN=Cog2 PE=2 SV=2 Back     alignment and function desciption
 Score =  211 bits (538), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 150/556 (26%), Positives = 269/556 (48%), Gaps = 42/556 (7%)

Query: 17  RFSILPVQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNT 76
           +F  +  + +P ++ +  RI   + +L  SL    + GL+  + +++ +CLR YA ID T
Sbjct: 181 QFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVDIVRHCLRTYATIDKT 240

Query: 77  RNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDI--- 133
           ++AE +    +V P + ++I     E    +    L+  Y ++ + V   C+ L ++   
Sbjct: 241 QDAEALVGQVLVKPYVNEVI----VEQFVESHPSSLQLMYNKLLEFVPHHCRLLREVTGG 296

Query: 134 --SSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEG 191
             SS + + +  +DFL NS+  E++  +++  P  F+PG P  F + Y  S+DF+   E 
Sbjct: 297 AVSSEKGTIVPGYDFLVNSVWPEIVRGLEEKLPSLFNPGDPDAFHQKYTVSMDFVQRFER 356

Query: 192 YCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQ 251
            C S+++V + RA   Y  F  +WN+ VYF +RF+E+AG+L++ALT          ++  
Sbjct: 357 QCGSQASVKRLRAHPAYHNFSNKWNLPVYFQIRFREVAGSLEAALTDGL------EDAPA 410

Query: 252 GNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSG 311
           G+   L       +  S+  CW  ++FL   + +  RL+LQ+L+R+S ++S       S 
Sbjct: 411 GSPYCLLASHRTWI--SLGKCWSDEMFLPLLAHRLWRLTLQILARFSVFVSELSVRPVSN 468

Query: 312 HASFNPGNEWAISAAPDD------------------FIYIIHDINCLATEVSGDYLTHVL 353
            ++         S  P +                   +Y++ D+  L  E   D L  V 
Sbjct: 469 ESAKETKKPLTGSKDPSEDQGSHASEASAASISSTQLVYVVSDLGRL-QEWLPDLLETVK 527

Query: 354 QLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRM 413
           Q L     +    +  ++ +   +LS+ +P + + IV  L E     L+    +   YR 
Sbjct: 528 QKLEMIGFKNFSSISAALEDSQSALSAHVPALSSRIVQDLSESCFSYLKSALEVPRLYRR 587

Query: 414 TNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAEL 473
           TNK +P   S YV   L+PL  L  G      + P      L +A +  T RY E  +++
Sbjct: 588 TNKEVPSTASSYVDSALKPLYQLQSGHG--DKVQPAVMQSWLQEALSDSTHRYFETVSDV 645

Query: 474 ISVARKTESSLLKIRQGAQRRAGASSDVSDH--NVSDTDKICMQLFLDIQEYGRSLAALG 531
           ++  +K E SL +++Q   RR+ A++ VS     +SD DKI +QL LD++  G  +  +G
Sbjct: 646 LNSVKKMEESLKRLKQA--RRSPATNPVSSSGGGMSDDDKIRLQLALDVEHLGEQIQRMG 703

Query: 532 VQAADIPPYRSLWQCV 547
           +Q +DI  + +L + V
Sbjct: 704 LQTSDIKSFPALMELV 719
Required for normal Golgi morphology and function.
Mus musculus (taxid: 10090)
>sp|Q14746|COG2_HUMAN Conserved oligomeric Golgi complex subunit 2 OS=Homo sapiens GN=COG2 PE=1 SV=1 Back     alignment and function description
>sp|Q54UC2|COG2_DICDI Conserved oligomeric Golgi complex subunit 2 OS=Dictyostelium discoideum GN=cog2 PE=3 SV=1 Back     alignment and function description
>sp|Q9VF78|COG2_DROME Conserved oligomeric Golgi complex subunit 2 OS=Drosophila melanogaster GN=ldlCp PE=2 SV=1 Back     alignment and function description
>sp|Q21444|COG2_CAEEL Conserved oligomeric Golgi complex subunit 2 OS=Caenorhabditis elegans GN=cogc-2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query558
255540279 756 Conserved oligomeric Golgi complex compo 0.971 0.716 0.774 0.0
225456291 751 PREDICTED: conserved oligomeric Golgi co 0.964 0.716 0.753 0.0
356563194 755 PREDICTED: conserved oligomeric Golgi co 0.971 0.717 0.741 0.0
224136109 757 predicted protein [Populus trichocarpa] 0.971 0.715 0.723 0.0
356514011 755 PREDICTED: conserved oligomeric Golgi co 0.971 0.717 0.730 0.0
449441234 754 PREDICTED: conserved oligomeric Golgi co 0.969 0.717 0.736 0.0
224121966 755 predicted protein [Populus trichocarpa] 0.967 0.715 0.733 0.0
147767731 777 hypothetical protein VITISV_007347 [Viti 0.964 0.692 0.713 0.0
297799512 756 hypothetical protein ARALYDRAFT_492352 [ 0.962 0.710 0.696 0.0
357477117 754 Conserved oligomeric Golgi complex subun 0.969 0.717 0.715 0.0
>gi|255540279|ref|XP_002511204.1| Conserved oligomeric Golgi complex component, putative [Ricinus communis] gi|223550319|gb|EEF51806.1| Conserved oligomeric Golgi complex component, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  885 bits (2286), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/542 (77%), Positives = 475/542 (87%)

Query: 17  RFSILPVQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNT 76
           +F +   QNLPFIENMEKRI+SASLLLDASLGHCFV GLEH++ N IYNCLRAYAAIDNT
Sbjct: 215 KFYMAHSQNLPFIENMEKRIQSASLLLDASLGHCFVDGLEHRDENAIYNCLRAYAAIDNT 274

Query: 77  RNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSA 136
            +AEEIF  T+VAPL+ KIIPHGPS  +AG SGD LE+DY QIKQC+EKDCKFLL+ISSA
Sbjct: 275 NSAEEIFRTTIVAPLIHKIIPHGPSGTVAGVSGDGLENDYYQIKQCIEKDCKFLLEISSA 334

Query: 137 ENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSR 196
           ENSGLH FDFLANSILKEVLSAIQKGKPGAFSPGRPT+FL NYKSSLDFLA+LEGYCPSR
Sbjct: 335 ENSGLHAFDFLANSILKEVLSAIQKGKPGAFSPGRPTEFLMNYKSSLDFLAHLEGYCPSR 394

Query: 197 SAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQA 256
           SAVAKFR E +YVEFMKQWNVGVYFSLRFQEIAGALDSAL+A SL PV+N +S Q N Q 
Sbjct: 395 SAVAKFRTEVVYVEFMKQWNVGVYFSLRFQEIAGALDSALSATSLVPVENLHSGQTNLQD 454

Query: 257 LTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFN 316
           LTLKQS TLL+S+KSCWR+DV +L CSDKFLRLSLQLL+RYSNWLSSG+AAR  G+   N
Sbjct: 455 LTLKQSATLLESLKSCWREDVLILSCSDKFLRLSLQLLARYSNWLSSGIAARKMGNLGSN 514

Query: 317 PGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGK 376
              EWAISA PDDF+YIIHD+ CLAT V GDYL H+LQLLS  S++VLDLVKQSIL+ GK
Sbjct: 515 TVYEWAISAVPDDFVYIIHDLTCLATVVCGDYLDHILQLLSPSSADVLDLVKQSILQSGK 574

Query: 377 SLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTL 436
           SL+ + P+ IN I++ LV +AVEDLRQ+KGI+ATYRMTNKPLPVRHSPYVSGVL PLK  
Sbjct: 575 SLNDLAPLAINAIIETLVNRAVEDLRQVKGISATYRMTNKPLPVRHSPYVSGVLHPLKAF 634

Query: 437 LEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAG 496
           L+GERA+TYLT E + ELL+ AAT++TSRY+ELAAE +SVARKTE SLL+IRQGAQRR G
Sbjct: 635 LDGERAITYLTKETRKELLVGAATELTSRYYELAAETVSVARKTEVSLLRIRQGAQRRGG 694

Query: 497 ASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQSLI 556
           ASSDVSD +V+++DKICMQLFLDIQEYGRSLAALGV+AADIP Y SLWQCVAP DRQ++I
Sbjct: 695 ASSDVSDQSVTNSDKICMQLFLDIQEYGRSLAALGVEAADIPAYYSLWQCVAPPDRQNVI 754

Query: 557 KF 558
            F
Sbjct: 755 SF 756

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225456291|ref|XP_002279916.1| PREDICTED: conserved oligomeric Golgi complex subunit 2 [Vitis vinifera] gi|297734402|emb|CBI15649.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356563194|ref|XP_003549849.1| PREDICTED: conserved oligomeric Golgi complex subunit 2-like [Glycine max] Back     alignment and taxonomy information
>gi|224136109|ref|XP_002322242.1| predicted protein [Populus trichocarpa] gi|222869238|gb|EEF06369.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356514011|ref|XP_003525701.1| PREDICTED: conserved oligomeric Golgi complex subunit 2-like [Glycine max] Back     alignment and taxonomy information
>gi|449441234|ref|XP_004138387.1| PREDICTED: conserved oligomeric Golgi complex subunit 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224121966|ref|XP_002318717.1| predicted protein [Populus trichocarpa] gi|222859390|gb|EEE96937.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147767731|emb|CAN71854.1| hypothetical protein VITISV_007347 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297799512|ref|XP_002867640.1| hypothetical protein ARALYDRAFT_492352 [Arabidopsis lyrata subsp. lyrata] gi|297313476|gb|EFH43899.1| hypothetical protein ARALYDRAFT_492352 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357477117|ref|XP_003608844.1| Conserved oligomeric Golgi complex subunit [Medicago truncatula] gi|355509899|gb|AES91041.1| Conserved oligomeric Golgi complex subunit [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query558
TAIR|locus:2126808756 AT4G24840 "AT4G24840" [Arabido 0.962 0.710 0.637 4.2e-182
ZFIN|ZDB-GENE-040426-2671730 cog2 "component of oligomeric 0.919 0.702 0.266 8.3e-51
MGI|MGI:1923582731 Cog2 "component of oligomeric 0.933 0.712 0.252 6.1e-47
UNIPROTKB|E1C7Y1739 COG2 "Uncharacterized protein" 0.372 0.281 0.304 1.2e-45
UNIPROTKB|F1P8W5678 COG2 "Uncharacterized protein" 0.965 0.794 0.248 2.7e-39
UNIPROTKB|F5H1E5622 COG2 "Conserved oligomeric Gol 0.939 0.842 0.245 1.4e-38
UNIPROTKB|B7Z2Y2679 COG2 "cDNA FLJ55945, highly si 0.939 0.771 0.245 2.7e-38
UNIPROTKB|Q14746738 COG2 "Conserved oligomeric Gol 0.939 0.710 0.245 4.1e-38
UNIPROTKB|F1RG46664 COG2 "Uncharacterized protein" 0.939 0.789 0.250 5.1e-38
UNIPROTKB|F1MQ89739 COG2 "Uncharacterized protein" 0.935 0.706 0.247 5.3e-38
TAIR|locus:2126808 AT4G24840 "AT4G24840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1767 (627.1 bits), Expect = 4.2e-182, P = 4.2e-182
 Identities = 344/540 (63%), Positives = 419/540 (77%)

Query:    17 RFSILPVQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNT 76
             +F +   QNLPFIENMEKRI+SAS+LLDASLGHCF+ GL + + +V+YNCLRAYAAIDNT
Sbjct:   218 KFYMAHAQNLPFIENMEKRIQSASVLLDASLGHCFIDGLNNSDTSVLYNCLRAYAAIDNT 277

Query:    77 RNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSA 136
               AEEIF  T+VAP +QKII H  +   AG S DELE+DY+QIK  + KDCK LL+ISS 
Sbjct:   278 NAAEEIFRTTIVAPFIQKIITHETTTNAAGTSEDELENDYKQIKHFIAKDCKMLLEISST 337

Query:   137 ENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSR 196
             + SGLHVFDFLANSILKEVL AIQK KPGAFSPGRPT+FL+NYK+SLDFLAYLEGYCPSR
Sbjct:   338 DKSGLHVFDFLANSILKEVLWAIQKVKPGAFSPGRPTEFLKNYKASLDFLAYLEGYCPSR 397

Query:   197 SAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIXXXXXXXXXXXXXXPVXXXXXXXXXXXA 256
             SAV KFRAEAI VEFMKQWNVGVYFSLRFQEI               V            
Sbjct:   398 SAVTKFRAEAICVEFMKQWNVGVYFSLRFQEIAGALDSALTSPSL--VFIQDSDKESSLN 455

Query:   257 LTLKQSVTLLDSMKSCWRQDVFLLPCSDKFXXXXXXXXXXYSNWLSSGLAARSSGHASFN 316
             L L+QS TLL+ ++SCW++DV +   +DKF          YS W+SS L  R S +AS +
Sbjct:   456 LILRQSDTLLECLRSCWKEDVLVFSAADKFLRLTLQLLSRYSFWVSSALNNRKS-NASPS 514

Query:   317 PGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGK 376
             PG EWA+SA  +DF+Y+IHD+NCL +EV GDYL H+ Q LSS S+EVLD+V+ SI +GG 
Sbjct:   515 PGCEWAVSATAEDFVYVIHDVNCLVSEVCGDYLGHISQYLSSSSTEVLDVVRISIEQGGV 574

Query:   377 SLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTL 436
             SL  +LP++  TI+D +V+K+VEDLRQL+GITAT+RMTNKPLPVRHSPYV G+LRP+K  
Sbjct:   575 SLEKVLPLLTKTIIDVIVDKSVEDLRQLRGITATFRMTNKPLPVRHSPYVVGLLRPVKAF 634

Query:   437 LEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAG 496
             LEG++A  YLT + K ELL  + ++IT RY+ELAA+++SVARKT+SSL K+RQ AQRR G
Sbjct:   635 LEGDKARNYLTQKTKEELLHGSVSEITRRYYELAADVVSVARKTQSSLQKLRQNAQRRGG 694

Query:   497 ASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQSLI 556
             A+S VSD NVS+TDK+CMQLFLDIQEYGR+++ALG++ ADIP Y S WQCVAP+DRQ+ I
Sbjct:   695 AASGVSDQNVSETDKMCMQLFLDIQEYGRNVSALGLKPADIPEYCSFWQCVAPADRQNSI 754
GO:0003674 "molecular_function" evidence=ND
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0007030 "Golgi organization" evidence=IEA
GO:0015031 "protein transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
ZFIN|ZDB-GENE-040426-2671 cog2 "component of oligomeric golgi complex 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1923582 Cog2 "component of oligomeric golgi complex 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1C7Y1 COG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P8W5 COG2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F5H1E5 COG2 "Conserved oligomeric Golgi complex subunit 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B7Z2Y2 COG2 "cDNA FLJ55945, highly similar to Conserved oligomeric Golgi complex component 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q14746 COG2 "Conserved oligomeric Golgi complex subunit 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RG46 COG2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MQ89 COG2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00017925001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (751 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00017574001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (115 aa)
    •   0.472
26N20_60
SubName- Full=Chromosome chr8 scaffold_68, whole genome shotgun sequence; (229 aa)
    •   0.463
GSVIVG00038831001
SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_98, whole genome shotg [...] (196 aa)
    •   0.416
GSVIVG00026599001
SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (197 aa)
    •   0.404

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query558
pfam12022120 pfam12022, DUF3510, Domain of unknown function (DU 4e-35
>gnl|CDD|221383 pfam12022, DUF3510, Domain of unknown function (DUF3510) Back     alignment and domain information 
 Score =  127 bits (322), Expect = 4e-35
 Identities = 50/131 (38%), Positives = 78/131 (59%), Gaps = 11/131 (8%)

Query: 390 VDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPE 449
           ++ LVE+ VE L+QL  I   YRMTNKP+P   S YV  +L+PL +  E E     ++PE
Sbjct: 1   INKLVERCVEFLKQLSSIPRLYRMTNKPVPTTPSSYVDSILKPLHSFKEFET----ISPE 56

Query: 450 AKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDT 509
              E+L    + +T RY E A+E++   +KTE SL ++++   + +G+        +SD 
Sbjct: 57  IIEEILTKVVSTVTERYKEKASEVLDSVKKTEESLRRLKRKRTKESGSI-------MSDD 109

Query: 510 DKICMQLFLDI 520
           DKI +QL+LD+
Sbjct: 110 DKIRLQLYLDV 120

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is about 130 amino acids in length. This domain is found associated with pfam06148. Length = 120

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 558
KOG2307705 consensus Low density lipoprotein receptor [Intrac 100.0
PF12022125 DUF3510: Domain of unknown function (DUF3510); Int 100.0
PF10191766 COG7: Golgi complex component 7 (COG7); InterPro: 98.61
PF10474234 DUF2451: Protein of unknown function C-terminus (D 97.51
PF04091311 Sec15: Exocyst complex subunit Sec15-like ; InterP 96.12
PF07393710 Sec10: Exocyst complex component Sec10; InterPro: 96.09
PF06248593 Zw10: Centromere/kinetochore Zw10; InterPro: IPR00 92.15
KOG2033 863 consensus Low density lipoprotein B-like protein [ 89.85
PF04437494 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR00 86.23
PF14923450 CCDC142: Coiled-coil protein 142 84.39
KOG2180793 consensus Late Golgi protein sorting complex, subu 82.1
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=6.5e-137  Score=1074.22  Aligned_cols=532  Identities=36%  Similarity=0.566  Sum_probs=486.3

Q ss_pred             hHHHHHHHHHHhhhhhhccCCCcchhhHHHHHHHHHHHHHHHHhHHHHhhhhcCCHHHHHHHHHHHHHhcChhhHHHHHH
Q 008653            5 SIIWSSYIMFSSRFSILPVQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFC   84 (558)
Q Consensus         5 ~~~~~~~E~nqL~f~~~~~~~~~~~~~~~~RI~~i~~~L~~~L~~~f~~~l~~~~~~~L~~cLr~Y~~ld~~~~aE~~~r   84 (558)
                      +.-|.|.|+|||+||+++|+++ +..++++||++++.+|+++|+++|++||+ .+.+.+++|||+|++||+++.||++||
T Consensus       167 sLERiAlelnqlkf~a~h~k~~-l~p~~e~ria~~~~~L~qsl~~lf~eglq-sa~~~l~nclriYatld~t~~ae~lfr  244 (705)
T KOG2307|consen  167 SLERIALELNQLKFHASHLKGS-LFPHSEERIAAEKIILSQSLAVLFAEGLQ-SAAGDLQNCLRIYATLDLTESAESLFR  244 (705)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHhhHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHhhchhHHHHHH
Confidence            4568899999999999999999 88889999999999999999999999995 599999999999999999999999999


Q ss_pred             HHhhHHHHhhhCCCCCCccccCCCcchHHHHHHHHHHHHH-HhhHHHHHhhhhccCCCcccccccccchHHHHHHHHhcC
Q 008653           85 NTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVE-KDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGK  163 (558)
Q Consensus        85 ~~vV~P~~~~ii~~~~~~~~~~~s~~gL~~iy~~il~fv~-~~~~~lleit~~~~~~~~~~dfl~nsvw~ev~~~l~~~l  163 (558)
                      ..||+||++++|+|+..    .+||+||.++|++|++||+ ++|+.+++++....+|++|||||+||+|++|..+|+++|
T Consensus       245 ~~vvapyi~evI~eq~~----e~sp~gl~~~ykqilefv~~h~c~llre~tssdk~g~~~fdFlvnS~l~~ilt~iek~m  320 (705)
T KOG2307|consen  245 LLVVAPYIAEVINEQHD----ETSPSGLLKLYKQILEFVKKHRCTLLREMTSSDKRGLPGFDFLVNSLLTFILTFIEKCM  320 (705)
T ss_pred             HHHHHHHHHHHHhhhhc----cCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhcCCCchHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999887    7899999999999999999 999999999977777899999999999999999999999


Q ss_pred             CccccCCCchHHHHHHHHHHHHHHHHHh--hCCCHHHHHHHhhchhHHHHHHhhccchhHHHHHHHHHHhHHHhhccccc
Q 008653          164 PGAFSPGRPTQFLRNYKSSLDFLAYLEG--YCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASL  241 (558)
Q Consensus       164 ~~iFapG~Pd~F~~nY~~t~~Fl~~lE~--~c~S~~~v~~lR~h~~y~~F~~rWNLpVYFQlRfqEIa~~lE~aL~~~~~  241 (558)
                      |++|+||||++||+||++|++||++||+  .|+|+.+|++||+||.|++||+|||||||||||||||||++|++|+ +.+
T Consensus       321 ps~f~Pgnp~~F~ekyk~t~DFl~~le~~~tC~s~~avt~~Rah~~~~sF~kkwNl~VYFqlrfqeiag~ldaaLt-p~~  399 (705)
T KOG2307|consen  321 PSVFVPGNPRLFHEKYKLTQDFLDNLESSHTCRSMLAVTKFRAHAICVSFMKKWNLPVYFQLRFQEIAGQLDAALT-PEM  399 (705)
T ss_pred             ccccCCCCcHHHHHHHHHHHHHHHhccccCcCchHHHHHHHHhhhHHHHHHHhcCcceeEeeeHHHHHHHHHHhcC-chh
Confidence            9999999999999999999999999999  9999999999999999999999999999999999999999999998 554


Q ss_pred             ccccCCCCCCCCCcccchhhHHHHHHHHhhhccCCccccccchHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCcc
Q 008653          242 APVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEW  321 (558)
Q Consensus       242 ~~~~~~~~~~~~~~~f~l~~s~~l~~~l~~cWs~~VfL~~L~~rFwkLtLQllsRy~~Wi~~~~~~~~~~~~~~~~~~~~  321 (558)
                      ...+..+++.++..+|++.+|.++|+||+|||+||||||++.|||||||||+++||+.|+++ +.+..    +++.+ .|
T Consensus       400 ~~d~l~d~~~Est~~l~l~as~a~~ealrrcWsddvylp~~vdKl~rltlQlllRysrwisa-itns~----gs~~s-kp  473 (705)
T KOG2307|consen  400 FADPLTDENRESTPQLHLGASRAIIEALRRCWSDDVYLPPIVDKLWRLTLQLLLRYSRWISA-ITNSF----GSEKS-KP  473 (705)
T ss_pred             hcccccccccccCccchhhHhHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHhHHHHH-HHhcc----CCCCC-CC
Confidence            44433344445656899999999999999999999999999999999999999999999984 44321    22211 33


Q ss_pred             cccCChhhHHHHHHh-HHHHHHHhhhhHHHHHHHHhccCChhhHHHHHHHHHhhchhhhccchhHHHHHHHHHHHHHHHh
Q 008653          322 AISAAPDDFIYIIHD-INCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVED  400 (558)
Q Consensus       322 ~~~~~~~~lv~l~~D-i~~L~~~i~~~~~~~i~~~l~~~~~~~~~~~~~~l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~  400 (558)
                         .+..+++++++| +.++.+.+|. ++++|+++++..+....+.+.++|+.++.+|.+++|.+.+.||+.+++.|...
T Consensus       474 ---~trtqlvyv~hdd~~llqevl~e-lle~I~~kl~~~~k~~sdv~a~sle~~g~Sl~a~lp~i~ktIIe~lsd~~~~~  549 (705)
T KOG2307|consen  474 ---ATRTQLVYVRHDDGNLLQEVLPE-LLESIWGKLHDITKVFSDVFAQSLEKHGRSLDALLPQIDKTIIEMLSDVCHQE  549 (705)
T ss_pred             ---cchhheeeeecccchHHHHHhHH-HHHHHHhhccchhhhhHHHHHHHHHHhcccHHHHhhhHHHHHHHHHHHHHHHH
Confidence               455788888855 5555555555 99999999998886666777789999999999999999999999999999999


Q ss_pred             hhhhccchhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008653          401 LRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKT  480 (558)
Q Consensus       401 Lk~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sV~Kt  480 (558)
                      |+||+||||+|||||||+||+||+||.++|+|+++|.++.+.  .|.+.+.+||+.+|.+++|.+|++.++|||+||+||
T Consensus       550 lrqv~dvprlyR~TnKevPtthSsYVv~aLrpvkal~eg~k~--~L~q~~~eeil~gv~seit~~yye~vsDVl~sv~kt  627 (705)
T KOG2307|consen  550 LRQVSDVPRLYRWTNKEVPTTHSSYVVTALRPVKALKEGLKC--ELEQPHTEEILRGVNSEITNYYYEKVSDVLDSVEKT  627 (705)
T ss_pred             HHHHhccHHHHHhccCCCCCcchHHHHHHHHHHHHHHHhhhh--hhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999977  789999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHhcccccccccc
Q 008653          481 ESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQSLI  556 (558)
Q Consensus       481 EeSL~RLKk~r~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~i~~lgv~~~~i~~~~~L~~~V~~~~~~~~~  556 (558)
                      |+||+|||+.+++++|+ ++.++++||||||||+||++||++|+.++++||+++++|.+|++|.+++....++..+
T Consensus       628 esSL~Rlkq~~~~~~g~-s~gss~~vSddDKir~QL~lDv~~~~s~~~kL~fqa~di~~~~~lvel~~~~~dsa~~  702 (705)
T KOG2307|consen  628 ESSLSRLKQKTTTDSGS-SGGSSQTVSDDDKIRQQLYLDVKYFLSYAEKLVFQAADITGLQELVELFDKDADSAIV  702 (705)
T ss_pred             HHHHHHHHhhccCCCCC-CCCCCCCcCcchHHHHHHHHHHHHHHHHHHHhcchHhhhhhHHHHHHHHHhhhhhhhh
Confidence            99999999999875554 5555689999999999999999999999999999999999999999999888777654

>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function [] Back     alignment and domain information
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis [] Back     alignment and domain information
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known Back     alignment and domain information
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane Back     alignment and domain information
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [] Back     alignment and domain information
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells Back     alignment and domain information
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism] Back     alignment and domain information
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases Back     alignment and domain information
>PF14923 CCDC142: Coiled-coil protein 142 Back     alignment and domain information
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query558
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 61.4 bits (148), Expect = 5e-10
 Identities = 95/589 (16%), Positives = 172/589 (29%), Gaps = 170/589 (28%)

Query: 20  ILPVQNLPFIENME-KRIKSA--SLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNT 76
           IL V    F++N + K ++    S+L    + H  +          ++  L +       
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK------ 74

Query: 77  RNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDISSA 136
                                    E +     + L  +Y+ +   ++ + +     S  
Sbjct: 75  -----------------------QEEMVQKFVEEVLRINYKFLMSPIKTEQR---QPSMM 108

Query: 137 ENSGLHVFDFLANSI----------------LKEVLSAIQK-------GKPGAFSPGRPT 173
               +   D L N                  L++ L  ++        G  G+   G+  
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS---GKTW 165

Query: 174 ---QFLRNYK--SSLDF-LAYLE-GYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFS---- 222
                  +YK    +DF + +L    C S   V +   + +  +    W      S    
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE-MLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 223 LRFQEIAGALDSALTAAS-------LAPVQNSNSNQ---GNSQAL--TLKQSVTLLDSMK 270
           LR   I   L   L +         L  VQN+ +      + + L  T  + VT  D + 
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT--DFLS 282

Query: 271 SCWRQDVFLLPCSDKF-LRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAIS--AA- 326
           +     + L   S          LL +Y +     L          NP     +S  A  
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT---NP---RRLSIIAES 336

Query: 327 -------PDDFIYIIHD---------INCL-ATEVSGDYL------------THVLQLL- 356
                   D++ ++  D         +N L   E    +             T +L L+ 
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396

Query: 357 ----SSCSSEVLD-LVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQL-KGITAT 410
                S    V++ L K S++E     S+   + I +I   L  K +E+   L + I   
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKEST---ISIPSIYLELKVK-LENEYALHRSIVDH 452

Query: 411 YRMT-----NKPLPVRHSPYV-SGVLRPLKTLLEGERA----MTYL-------------- 446
           Y +      +  +P     Y  S +   LK +   ER     M +L              
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512

Query: 447 ---TPEAKNELLLDAAT---QIT---SRYHELAAELISVARKTESSLLK 486
                 +    L         I     +Y  L   ++    K E +L+ 
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query558
2a2f_X325 Exocyst complex component SEC15; all helical struc 96.72
3n1e_A141 Vacuolar protein sorting-associated protein 54; sp 94.29
3swh_A341 MUNC13-1, protein UNC-13 homolog A; alpha helical, 86.48
2fji_1399 Exocyst complex component SEC6; exocytosis, tandem 80.06
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster} Back     alignment and structure
Probab=96.72  E-value=0.43  Score=48.91  Aligned_cols=107  Identities=15%  Similarity=0.161  Sum_probs=74.7

Q ss_pred             hhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 008653          409 ATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIR  488 (558)
Q Consensus       409 ~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sV~KtEeSL~RLK  488 (558)
                      .-|=|+-.++|++||.|+..++.=|+.-.. .-.  .||.++++.+..+++++++.+..+.    |.     ++..||+ 
T Consensus       204 a~yDW~~~~~~~~ps~yi~dli~fL~~~f~-sl~--~LP~~v~~~~~~~a~~his~~l~~~----Ll-----~~~vk~i-  270 (325)
T 2a2f_X          204 SAYDWLLVEPPGIASAFITDMISYLKSTFD-SFA--FKLPHIAQAACRRTFEHIAEKIYSI----MY-----DEDVKQI-  270 (325)
T ss_dssp             CCTTCC----CCSCCHHHHHHHHHHHHHHH-TTT--TTSHHHHHHHHHHHHHHHHHHHHHH----HT-----C-------
T ss_pred             cccCCCCCCCCCCccHHHHHHHHHHHHHHH-HHH--cCCHHHHHHHHHHHHHHHHHHHHHH----hc-----Ccchhhc-
Confidence            447799899999999999999999998887 333  7999999999999999999999884    32     2334332 


Q ss_pred             hcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCCC----CCCccHHHHHHhcc
Q 008653          489 QGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQA----ADIPPYRSLWQCVA  548 (558)
Q Consensus       489 k~r~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~i~~lgv~~----~~i~~~~~L~~~V~  548 (558)
                        ..   +        |       =.|+-+||.++..-+.+.+++.    .=-..|.+|.++|.
T Consensus       271 --n~---~--------a-------v~~~~~Dv~~lE~fa~~~~v~~l~~~~L~~~F~eLrQli~  314 (325)
T 2a2f_X          271 --ST---G--------A-------LTQINLDLMQCEFFAASEPVPGLKEGELSKYFLRNRQLLD  314 (325)
T ss_dssp             --CC---T--------T-------HHHHHHHHHHHHHHHTTCSSSSCCSSTTGGGGHHHHHHHH
T ss_pred             --CH---H--------H-------HHHHHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHHHHH
Confidence              11   1        1       2589999999999998866542    22267777777663
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A Back     alignment and structure
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus} Back     alignment and structure
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00