Citrus Sinensis ID: 008674

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------
Protein Sequence
MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGEDGEDSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGEYQASHRERRGSSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVPISSSVAPRTRPSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNNASTRPPPLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITYTELPQIVSGLLSHAPVPQTKTSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVSKFLESPKVVEKSEGVSSPPLTPISLANVKPVSIVSEVSSQSAQNQR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccEEEccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccHHccccHccccccccccccccccccccccccccccHHHHHHHcccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHcc
Coil and Loop (DISEMBL)
MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQrekgksksgkgesVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDyqfsgledndgedgedsyyaneagelsfdyrdnkqgldVVSTSrksmevddvdvsfpqastvenaevnldknpgeyqashrerrgssfsapifperkidpaerIRQVQqssarqpstyvlptpidakvpisssvaprtrpsnpsgrtynlshsspleqkkedrdygdahlsehsglksqsllkesdsnnastrppplrdglalpqldtlnssdtkkiktqassgpltsksssskpalsssgpitytelPQIVSGllshapvpqtktsprvsptaspplvsspriselhelprppnafatkpakssglvghsaplmfrnqehtstnknpsmasytasplpipplivsrsfsipsssQKAMALHVSKflespkvveksegvssppltpislanvkpVSIVSEVSsqsaqnqr
Flexible Loop (DISEMBL)
MLGEVQFELQKLVDNYRSNIFltitnpsesllnELRTVEDMKRQCDEKRNVCEYVMAQQrekgksksgkgesVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGEDGEDSYYANEAgelsfdyrdnkQGLDVVSTSrksmevddvdvsfpqastvenaevnldknpgeyqashrerrgssfsapifperkidPAERIRQVqqssarqpstyvlptpidakvpisssvaprtrpsnpsgrtynlshsspleqKKEDRDYGDAHLsehsglksqslLKESDsnnastrppplrdglalpqldtlnssdtkkiktqassgpltsksssskpalsssGPITYTELPQIVSGLLSHAPVPQTktsprvsptasppLVSSPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVSKFLESPKvveksegvssppltpislanvkpVSIVSevssqsaqnqr
Low Complexity Region (SEG)
MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQRekgksksgkgesVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSgledndgedgedSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGEYQASHRERRGSSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVPISSSVAPRTRPSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNNASTRPPPLRDGLALPQLDTLNSSDTKKIKTQassgpltsksssskpalsssgPITYTELPQIVSGLLSHAPVPQTKTSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVsrsfsipsssQKAMALHVSKFLESPKVVEKSEGVSSPPLTPISLANVKPVSIVSEVSSQSAQNQR
Disordered region (IsUnstruct)
*****QFELQKLVDNYRSNIFLTITNPSESLLNEL**************NVCEYV**********************************ARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSG*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*******ELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCE*******************************EYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGEDGEDSYYANEA***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQ**************************EYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGEDGEDSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGE***********SFSAPIFPERKIDPAER***********PSTYVLPTPIDAKVPISS***************************************************************PLRDGLALPQLDTLNSSDTKK************************GPITYTELPQIVSGLLSHAPV*******************SPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFS********MALHVSKFLESP***********PPLTPISLANVKPVSIV************
Disordered Region (DISPRO)
MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREK*********SVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLE************ANEAGELSFDYRDNK*********************************************************************I***QQSSARQPSTYVLPTPIDA***********************************************************************************************************************************************************P*IS***E*PRPPN******************************************LPIPPLIVSRSFSIPSSSQKAMALHVSK*********************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGExxxxxxxxxxxxxxxxxxxxxCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGEDGEDSYYANEAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGEYQASHRERRGSSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVPISSSVAPRTRPSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNNASTRPPPLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITYTELPQIVSGLLSHAPVPQTKTSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVSKFLESPKVVEKSEGVSSPPLTPISLANVKPVSIVSEVSSQSAQNQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	557	2.2.26 [Sep-21-2011]
O22799	623	Uncharacterized protein A	yes	no	0.881	0.788	0.474	1e-108

>sp|O22799|Y2349_ARATH Uncharacterized protein At2g33490 OS=Arabidopsis thaliana GN=At2g33490 PE=1 SV=2

 Score =  392 bits (1008), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 270/569 (47%), Positives = 353/569 (62%), Gaps = 78/569 (13%)

Query: 1   MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQR 60
           MLG++QFELQKLVD YRS+IF TIT PSESLLNELR VE+M+R CDEKRNV E ++ +QR
Sbjct: 92  MLGKLQFELQKLVDKYRSHIFQTITIPSESLLNELRIVEEMQRLCDEKRNVYEGMLTRQR 151

Query: 61  EKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQL 120
           EKG+SK GKGE+ S  QQLQ A+D+YE E  L VFRLKSLKQGQ RSLLTQAARHHAAQL
Sbjct: 152 EKGRSKGGKGETFS-PQQLQEAHDDYENETTLFVFRLKSLKQGQTRSLLTQAARHHAAQL 210

Query: 121 NFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGL-----------EDNDGEDGEDSYYANE 169
            FF+K   SLE VD HV++V E QHIDY FSGL            +NDG +  D      
Sbjct: 211 CFFKKALSSLEEVDPHVQMVTESQHIDYHFSGLEDDDGDDEIENNENDGSEVHDD----- 265

Query: 170 AGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGEYQASH-- 227
            GELSF+YR N +  D  S++  S E+ + D++FPQ      A+ N +   G Y+ SH  
Sbjct: 266 -GELSFEYRVNDKDQDADSSAGGSSELGNSDITFPQIGGPYTAQENEE---GNYRKSHSF 321

Query: 228 -RERRGSSFSAPIFPE-RKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVPISSSVAPRT 285
            R+ R  S SAP+FPE R   P+E++ +++ +  R+ +TY LPTP++     SS+ +P  
Sbjct: 322 RRDVRAVSQSAPLFPENRTTPPSEKLLRMRSTLTRKFNTYALPTPVETTRSPSSTTSPGH 381

Query: 286 R---PSNPS-GRTYNLSHSSPLEQKKEDRDYGDAHLSEHS--GLKSQSLLKESDSNNAST 339
           +    SNP+   T  + +SSPLE +      G A +S  S   LK Q +L+ES+  N S 
Sbjct: 382 KNVGSSNPTKAITKQIWYSSPLETR------GPAKVSSRSMVALKEQ-VLRESN-KNTSR 433

Query: 340 RPPPLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITYTELPQIV 399
            PPPL DGL   +L TL        K ++ SGPLTSK   +KP  ++S          + 
Sbjct: 434 LPPPLADGLLFSRLGTL--------KRRSFSGPLTSKPLPNKPLSTTS---------HLY 476

Query: 400 SGLLSHAPVPQTKTS--PRV--SPTASPPLVSSPRISELHELPRPPNAFATKPAKSSGLV 455
           SG     P+P+   S  P+V  SPTASP  VS+P+ISELHELPRPP   +T   KSS  +
Sbjct: 477 SG-----PIPRNPVSKLPKVSSSPTASPTFVSTPKISELHELPRPPPRSST---KSSREL 528

Query: 456 GHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVSKFLE 515
           G+SAPL+ R+Q  +       + + +ASPLPIPP I +RSFSIP+S+ +A  L +SK   
Sbjct: 529 GYSAPLVSRSQLLSK-----PLITNSASPLPIPPAI-TRSFSIPTSNLRASDLDMSK--- 579

Query: 516 SPKVVEKSEGVSSPPLTPISLANVKPVSI 544
              +  K  G  SPPLTP+SL +  P ++
Sbjct: 580 -TSLGTKKLGTPSPPLTPMSLIHPPPQAL 607


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.124    0.341 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 200,023,561
Number of Sequences: 539616
Number of extensions: 8703078
Number of successful extensions: 32682
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 910
Number of HSP's that attempted gapping in prelim test: 29911
Number of HSP's gapped (non-prelim): 2447
length of query: 557
length of database: 191,569,459
effective HSP length: 123
effective length of query: 434
effective length of database: 125,196,691
effective search space: 54335363894
effective search space used: 54335363894
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	557
255543639	656	conserved hypothetical protein [Ricinus	0.985	0.836	0.702	0.0
296082302	643	unnamed protein product [Vitis vinifera]	0.949	0.822	0.673	0.0
359488563	700	PREDICTED: uncharacterized protein At2g3	0.978	0.778	0.619	0.0
224129244	625	predicted protein [Populus trichocarpa]	0.908	0.809	0.640	1e-172
224055789	649	predicted protein [Populus trichocarpa]	0.982	0.842	0.637	1e-167
356560450	637	PREDICTED: uncharacterized protein At2g3	0.931	0.814	0.574	1e-157
356570208	620	PREDICTED: uncharacterized protein At2g3	0.929	0.835	0.586	1e-146
357508303	628	hypothetical protein MTR_7g083240 [Medic	0.937	0.831	0.578	1e-145
296088724	651	unnamed protein product [Vitis vinifera]	0.967	0.827	0.524	1e-134
225425164	653	PREDICTED: uncharacterized protein At2g3	0.967	0.825	0.522	1e-132

>gi|255543639|ref|XP_002512882.1| conserved hypothetical protein [Ricinus communis] gi|223547893|gb|EEF49385.1| conserved hypothetical protein [Ricinus communis]

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/562 (70%), Positives = 452/562 (80%), Gaps = 13/562 (2%)

Query: 1   MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQR 60
           MLG+VQFELQKLVD+YRS+IFLTITNPSESLLNELRTVEDMKRQCDEKRNV EY++AQQ+
Sbjct: 93  MLGKVQFELQKLVDSYRSHIFLTITNPSESLLNELRTVEDMKRQCDEKRNVYEYMVAQQK 152

Query: 61  EKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQL 120
           EKGKSKSGKGES +LQ+ L+ A+DEY+EEA LCVFRLKSLKQGQ RSLLTQAARHHAAQL
Sbjct: 153 EKGKSKSGKGESFTLQE-LRTAHDEYDEEATLCVFRLKSLKQGQSRSLLTQAARHHAAQL 211

Query: 121 NFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGL---EDNDGEDGEDSYYANEAGELSFDY 177
           NFFRKG KSLEAVD HV++VAE+QHIDYQFSGL      DGED +D   ANE  ELSFDY
Sbjct: 212 NFFRKGLKSLEAVDDHVKIVAEQQHIDYQFSGLEDDGREDGEDDDDIGDANEGRELSFDY 271

Query: 178 RDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGEYQASHRERRGSSFSA 237
           R+NKQG DV+S SR SMEVDD D+SFPQAS  ENAE+N DK+ G  QAS RE R  S SA
Sbjct: 272 RENKQGHDVISASRNSMEVDDEDLSFPQASFTENAELNPDKSQGGLQASLREPRPGSHSA 331

Query: 238 PIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVPISS----SVAPRTRPSNPSGR 293
           PIFPERK DP ERIR + QSSAR+ +TYVLPTPIDAK PISS    SVA  TRPS+ SGR
Sbjct: 332 PIFPERKSDPIERIR-LMQSSARKSNTYVLPTPIDAKSPISSRTSGSVA-NTRPSDFSGR 389

Query: 294 TYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNNAST-RPPPLRDGLALPQ 352
           T+NL HSSPLEQKK ++D GD HLSE + LK++S  K+S  N+ ST  PPPL +G++LP 
Sbjct: 390 THNLWHSSPLEQKKHEKDPGDYHLSELTALKTRSAHKDSSINSTSTLLPPPLVEGISLPH 449

Query: 353 LDTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITYTELPQIVSGLLSHAPVPQTK 412
           LD  N+SD KKIK Q+ SGP+TSK  S+KPALS+SGPI   ELPQ VSG+ S   +PQ  
Sbjct: 450 LDMYNASDNKKIKRQSFSGPITSKPWSTKPALSASGPIFSNELPQQVSGVPSRVTIPQN- 508

Query: 413 TSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTN 472
           TSP+VSPTASPPL SSPRISELHELPRPP  F TKPAKSS  VGHSAPL+ RN EH+ T 
Sbjct: 509 TSPKVSPTASPPLASSPRISELHELPRPPGNFVTKPAKSSAPVGHSAPLV-RNPEHSGTI 567

Query: 473 KNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVSKFLESPKVVEKSEGVSSPPLT 532
           +  S  +  ASPLPIPPLIV RSFSIPSSSQ+AM +HVSK +ES ++ +K+E V SPPLT
Sbjct: 568 RVSSGVTNLASPLPIPPLIVPRSFSIPSSSQRAMTIHVSKSVESLQMPDKTEEVDSPPLT 627

Query: 533 PISLANVKPVSIVSEVSSQSAQ 554
           PISLAN+K  S +SE+   S Q
Sbjct: 628 PISLANLKTASTISEIIPHSGQ 649

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082302|emb|CBI21307.3| unnamed protein product [Vitis vinifera]

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/546 (67%), Positives = 437/546 (80%), Gaps = 17/546 (3%)

Query: 1   MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQR 60
           M+G+VQF+LQKLVD+YRS+I  TITNPSESLLNELRTVE+MKRQCDEKRNV EY+ AQQR
Sbjct: 93  MMGKVQFDLQKLVDSYRSHIIQTITNPSESLLNELRTVEEMKRQCDEKRNVYEYMKAQQR 152

Query: 61  EKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQL 120
           EKG+SKSGKGES+   QQL AA+DE+ +EA LCVFRLKSLKQGQ RSLLTQAARHHAAQL
Sbjct: 153 EKGRSKSGKGESL---QQLTAAHDEFNDEATLCVFRLKSLKQGQSRSLLTQAARHHAAQL 209

Query: 121 NFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGEDGE----DSYYANEAGELSFD 176
           NFFRKG KSLEAV+ H+R+VAERQHIDYQFSGLED+D EDGE    + Y A+E GELSFD
Sbjct: 210 NFFRKGLKSLEAVEQHLRVVAERQHIDYQFSGLEDDDVEDGEDDGENGYDASEGGELSFD 269

Query: 177 YRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGEYQASHRERRGSSFS 236
           YR NK+G++VVS +R SME+D  D+SFPQASTVE  E+N +KN G+ Q   RE R  S+S
Sbjct: 270 YRQNKRGIEVVSATRNSMELDQSDLSFPQASTVETVELNPEKNHGDLQGFSREPRAGSYS 329

Query: 237 APIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVPI---SSSVAPRTRPSNPSGR 293
           API  E K DP+ERIR   QSS R+  TYVLP P+ AK      +S+  PRTRP++  G 
Sbjct: 330 APIIAE-KSDPSERIRT--QSSTRKLHTYVLPIPVGAKSSTPSRTSNSVPRTRPTSLHGG 386

Query: 294 TYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNNASTR-PPPLRDGLALPQ 352
           T NL HSSPLE KK ++D GD H+S  +  ++QS+LKES+SNNA+ R PPPL +GL+LPQ
Sbjct: 387 TRNLWHSSPLEPKKHEKDSGDDHMSGSTISEAQSVLKESNSNNAAIRLPPPLAEGLSLPQ 446

Query: 353 LDTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITYTELPQIVSGLLSHAPVPQTK 412
           LDTLN+SDTKK+K  A SGPLT K  S+KP LSSSGPI   ELPQ+VSGLLS  P+PQ  
Sbjct: 447 LDTLNTSDTKKVKRLAFSGPLTGKPWSTKPVLSSSGPIAPAELPQLVSGLLSRVPIPQPS 506

Query: 413 TSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTN 472
           +SP++SP+ASPPLVSSPRI+ELHELPRPP + ATKPA+  GLVGHSAPL+ RN E ++T+
Sbjct: 507 SSPKISPSASPPLVSSPRINELHELPRPPVSLATKPARFPGLVGHSAPLISRN-ELSATS 565

Query: 473 KNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVSKFLESPKVVEKSEGVSSPPLT 532
           K  SMAS  ASPLP PP  V RS+SIPSSSQ+A ALHV+K LES +  +K+E V SPPLT
Sbjct: 566 KTSSMASNAASPLPTPP--VPRSYSIPSSSQRATALHVTKVLESSQNPDKAEEVGSPPLT 623

Query: 533 PISLAN 538
           PISL+N
Sbjct: 624 PISLSN 629

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488563|ref|XP_002275111.2| PREDICTED: uncharacterized protein At2g33490-like [Vitis vinifera]

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/612 (61%), Positives = 449/612 (73%), Gaps = 67/612 (10%)

Query: 1   MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQR 60
           M+G+VQF+LQKLVD+YRS+I  TITNPSESLLNELRTVE+MKRQCDEKRNV EY+ AQQR
Sbjct: 93  MMGKVQFDLQKLVDSYRSHIIQTITNPSESLLNELRTVEEMKRQCDEKRNVYEYMKAQQR 152

Query: 61  EKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQL 120
           EKG+SKSGKGES+   QQL AA+DE+ +EA LCVFRLKSLKQGQ RSLLTQAARHHAAQL
Sbjct: 153 EKGRSKSGKGESL---QQLTAAHDEFNDEATLCVFRLKSLKQGQSRSLLTQAARHHAAQL 209

Query: 121 NFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGEDGE----DSYYANEAGELSFD 176
           NFFRKG KSLEAV+ H+R+VAERQHIDYQFSGLED+D EDGE    + Y A+E GELSFD
Sbjct: 210 NFFRKGLKSLEAVEQHLRVVAERQHIDYQFSGLEDDDVEDGEDDGENGYDASEGGELSFD 269

Query: 177 YRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEV---------------------- 214
           YR NK+G++VVS +R SME+D  D+SFPQASTVE  EV                      
Sbjct: 270 YRQNKRGIEVVSATRNSMELDQSDLSFPQASTVETVEVLPSSVKATLLGWDGSYVGKKRR 329

Query: 215 ----------------------------NLDKNPGEYQASHRERRGSSFSAPIFPERKID 246
                                       N +KN G+ Q   RE R  S+SAPI  E K D
Sbjct: 330 EVWRVGPLCIFWTVGKASFLTQSLHLQLNPEKNHGDLQGFSREPRAGSYSAPIIAE-KSD 388

Query: 247 PAERIRQVQQSSARQPSTYVLPTPIDAKVPI---SSSVAPRTRPSNPSGRTYNLSHSSPL 303
           P+ERIR   QSS R+  TYVLP P+ AK      +S+  PRTRP++  G T NL HSSPL
Sbjct: 389 PSERIRT--QSSTRKLHTYVLPIPVGAKSSTPSRTSNSVPRTRPTSLHGGTRNLWHSSPL 446

Query: 304 EQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNNASTR-PPPLRDGLALPQLDTLNSSDTK 362
           E KK ++D GD H+S  +  ++QS+LKES+SNNA+ R PPPL +GL+LPQLDTLN+SDTK
Sbjct: 447 EPKKHEKDSGDDHMSGSTISEAQSVLKESNSNNAAIRLPPPLAEGLSLPQLDTLNTSDTK 506

Query: 363 KIKTQASSGPLTSKSSSSKPALSSSGPITYTELPQIVSGLLSHAPVPQTKTSPRVSPTAS 422
           K+K  A SGPLT K  S+KP LSSSGPI   ELPQ+VSGLLS  P+PQ  +SP++SP+AS
Sbjct: 507 KVKRLAFSGPLTGKPWSTKPVLSSSGPIAPAELPQLVSGLLSRVPIPQPSSSPKISPSAS 566

Query: 423 PPLVSSPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNPSMASYTA 482
           PPLVSSPRI+ELHELPRPP + ATKPA+  GLVGHSAPL+ RN E ++T+K  SMAS  A
Sbjct: 567 PPLVSSPRINELHELPRPPVSLATKPARFPGLVGHSAPLISRN-ELSATSKTSSMASNAA 625

Query: 483 SPLPIPPLIVSRSFSIPSSSQKAMALHVSKFLESPKVVEKSEGVSSPPLTPISLANVKPV 542
           SPLP PP  V RS+SIPSSSQ+A ALHV+K LES +  +K+E V SPPLTPISL+N KP 
Sbjct: 626 SPLPTPP--VPRSYSIPSSSQRATALHVTKVLESSQNPDKAEEVGSPPLTPISLSNSKPT 683

Query: 543 SIVSEVSSQSAQ 554
           S +SEV+SQS Q
Sbjct: 684 STISEVASQSGQ 695

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129244|ref|XP_002328926.1| predicted protein [Populus trichocarpa] gi|222839356|gb|EEE77693.1| predicted protein [Populus trichocarpa]

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 340/531 (64%), Positives = 397/531 (74%), Gaps = 25/531 (4%)

Query: 1   MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQR 60
           MLG VQFELQKLVD+YRS+IFLTITNPSESLLNELRTVEDMKRQCDEKRNV EY++AQQ+
Sbjct: 90  MLGNVQFELQKLVDSYRSHIFLTITNPSESLLNELRTVEDMKRQCDEKRNVYEYMVAQQK 149

Query: 61  EKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQL 120
           +KG+SK GK ES +LQQ L++A +EY+EEA LCVFRLKSLKQGQ RSLLTQ ARHHAAQL
Sbjct: 150 DKGRSKGGKDESTTLQQ-LRSAREEYDEEATLCVFRLKSLKQGQSRSLLTQVARHHAAQL 208

Query: 121 NFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDN---DGED-GEDSYYANEAGELSFD 176
           NFF+KG KSLE V+ HVRL+ E QHIDY FSGLED+   DGED GED     E  ELSFD
Sbjct: 209 NFFQKGLKSLETVEPHVRLITEHQHIDYHFSGLEDDGREDGEDYGEDVDDTYEGRELSFD 268

Query: 177 YRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGEYQASHRERRGSSFS 236
           YR N QG   VS +R SMEVD+ D+SFPQA   EN E+N DK PG +    RE RG S S
Sbjct: 269 YRANNQG-HAVSAARNSMEVDEEDLSFPQAPAAENVELNPDKTPGGFHFPIREPRGGSHS 327

Query: 237 APIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVPISSSVA---PRTRPSNPSGR 293
           APIFPERK DP ERIRQ+Q+SS R+ +TYVLPTP+DAK  ISS  +   P TR  + SGR
Sbjct: 328 APIFPERKPDPVERIRQIQKSS-RKSNTYVLPTPVDAKGVISSRASGSVPNTRQIDISGR 386

Query: 294 TYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNNASTR-PPPLRDGLALPQ 352
           T+ LSHSSPLEQKK ++D GD HL E +  K +S  KES++ NAST+ P PL  G++ PQ
Sbjct: 387 THYLSHSSPLEQKKNEKDSGDGHLPEFTPSKERSGHKESNNPNASTQLPRPLVGGISFPQ 446

Query: 353 LDTLNSSDTKKIKTQASSGPLTSKSSSSKPAL-SSSGPITYTELPQIVSGLLSHAPVPQT 411
           LD  N+SD KKIK Q+ SGP+TSK  S K  L SSSGPI+ TEL Q            + 
Sbjct: 447 LDVYNASDNKKIKRQSFSGPITSKPWSMKLGLSSSSGPISATELSQ------------EP 494

Query: 412 KTSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTST 471
            TSP+VSP+ SPPLVSSPRISELHELPRPP   A K AKS G +GHSAPL+ RN E + T
Sbjct: 495 STSPKVSPSTSPPLVSSPRISELHELPRPPGNLAAKAAKSLGPIGHSAPLV-RNPELSGT 553

Query: 472 NKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVSKFLESPKVVEK 522
           NK  S A+  ASPLP PPL+V  SFSIPS S + M++HVSK L S ++++K
Sbjct: 554 NKISSGAANLASPLPTPPLMVPTSFSIPSISPRTMSVHVSKLLVSSQLLDK 604

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055789|ref|XP_002298654.1| predicted protein [Populus trichocarpa] gi|222845912|gb|EEE83459.1| predicted protein [Populus trichocarpa]

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 358/562 (63%), Positives = 423/562 (75%), Gaps = 15/562 (2%)

Query: 1   MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQR 60
           MLG+VQFELQKL+D+YRS+IFLTITNPSESLLNELRTVEDMKRQCDEKRNV EY++AQQ+
Sbjct: 90  MLGKVQFELQKLLDSYRSHIFLTITNPSESLLNELRTVEDMKRQCDEKRNVYEYMVAQQK 149

Query: 61  EKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQL 120
           +KG+SK GK ES++LQQ LQ A +EY+EEA LCVFRLKSLKQGQ RSLLTQAARHHAAQL
Sbjct: 150 DKGRSKGGKDESITLQQ-LQTAREEYDEEATLCVFRLKSLKQGQSRSLLTQAARHHAAQL 208

Query: 121 NFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLED----NDGEDGEDSYYANEAGELSFD 176
           NFF+KG KSLE V+ HVRLV E QHIDY FSGLE     +  +DGED    NE  ELSFD
Sbjct: 209 NFFQKGLKSLETVEPHVRLVTEHQHIDYHFSGLESDGREDGEDDGEDGGDTNERRELSFD 268

Query: 177 YRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGEYQASHRERRGSSFS 236
           YR+N QG  VVS +R SMEV    ++F     +   ++N DKN G +Q   RE RG S S
Sbjct: 269 YRENNQGNAVVSAARGSMEVSASYLAFKICIFL---QLNPDKNHGGFQFPSREPRGGSHS 325

Query: 237 APIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVPISSSVA---PRTRPSNPSGR 293
           API PERK DP ERIRQ+QQ+S R+ +TYVLPTPIDAK  ISS  +   P TR ++ SGR
Sbjct: 326 APIVPERKPDPVERIRQMQQAS-RKSNTYVLPTPIDAKGAISSRTSCSVPNTRQTDISGR 384

Query: 294 TYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNNASTR-PPPLRDGLALPQ 352
            +NL HSSPLEQKK ++D GD HLS+ + LK++S  KES++ NAST+ PPPL  G++ PQ
Sbjct: 385 AHNLWHSSPLEQKKNEKDSGDGHLSDFTALKARSGHKESNNPNASTQLPPPLVGGISYPQ 444

Query: 353 LDTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITYTELPQIVSGLLSHAPVPQTK 412
           LD  N+SD KK K Q+ SGP+TSK  S KP LSSSGPI+ TEL Q VSG+LS    PQ  
Sbjct: 445 LDVHNASDYKKNKWQSFSGPITSKPWSMKP-LSSSGPISSTELSQQVSGMLSRGANPQPS 503

Query: 413 TSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTN 472
           +SP+VSP+ SPPLVSSP+ISELHELPRPP   A K AK S L+GHSAPL  RN E   T+
Sbjct: 504 SSPKVSPSTSPPLVSSPKISELHELPRPPGNLAAKAAKPSVLIGHSAPLS-RNPELAGTS 562

Query: 473 KNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVSKFLESPKVVEKSEGVSSPPLT 532
           K  + A+  ASPLP PPLIV RSFSIPSSSQ+AM +HVSK L+S +V  K   V SPPLT
Sbjct: 563 KISTGAANLASPLPPPPLIVPRSFSIPSSSQRAMTVHVSKLLDSSQVSYKPGEVDSPPLT 622

Query: 533 PISLANVKPVSIVSEVSSQSAQ 554
           P+SLAN++P   +SE    S Q
Sbjct: 623 PMSLANMRPAPAISEPVPHSGQ 644

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560450|ref|XP_003548505.1| PREDICTED: uncharacterized protein At2g33490-like [Glycine max]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 334/581 (57%), Positives = 412/581 (70%), Gaps = 62/581 (10%)

Query: 1   MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQR 60
           MLG VQ ELQKLVD+YRS+I LTITNPSESLLNELRTVEDMKRQCDEKR+V EY++AQQ+
Sbjct: 91  MLGSVQLELQKLVDSYRSHIVLTITNPSESLLNELRTVEDMKRQCDEKRDVYEYMIAQQK 150

Query: 61  EKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQL 120
           EKGKSKS KGES +LQQ LQAA+ EYE+EA+LC FRLKSLKQGQ RSLLTQAARHHAAQL
Sbjct: 151 EKGKSKSAKGESFTLQQ-LQAAHAEYEDEAKLCAFRLKSLKQGQSRSLLTQAARHHAAQL 209

Query: 121 NFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGL----EDNDGEDGEDSYYANEAGELSFD 176
           NFFRKG KSLEAVD HVR++AERQHIDYQFSGL     +ND  D  + +   E GELSFD
Sbjct: 210 NFFRKGLKSLEAVDPHVRMIAERQHIDYQFSGLEDDGGENDNNDDGNDFDVIEGGELSFD 269

Query: 177 YRDNKQGLDVVSTSRKSMEVDDVDV------------------SFPQASTVENAEVNLDK 218
           YR NKQG  +VSTS  S EV ++                    S+ +AST E AE +L+K
Sbjct: 270 YRANKQGPYIVSTSPNSAEVGNLYYSKLECCHFILVAVEESGRSYIRASTPETAETSLEK 329

Query: 219 NPGEYQASHRERRGSSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVPIS 278
           N G+++ S+  R G S+SAPI  E+K DPAE++RQ+   SA + + YVLPTP++ K   +
Sbjct: 330 NQGDFKVSN--RVGGSYSAPILAEKKFDPAEKVRQLLAFSAAKSNAYVLPTPVNIKETKT 387

Query: 279 SSVAPRTRPSNPSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNNAS 338
           SS APRT   + SG  +NL HSSPL++KK ++D  D+ LSE +  ++ S+LKESDS+ + 
Sbjct: 388 SS-APRT---SASGSLHNLWHSSPLDEKKNEKDV-DSKLSEPTIPRAHSVLKESDSDTSY 442

Query: 339 TR-PPPLRDGLALPQLDTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITYTELPQ 397
           T+ P P  DGL LPQ+D L++SDTKKIK QA SGPLT+K  S KP               
Sbjct: 443 TQLPRPSADGLLLPQVDFLSASDTKKIKRQAFSGPLTNKPLSVKP--------------- 487

Query: 398 IVSGLLSHAPVPQTKTSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSSGLVGH 457
            VSG  S  PVPQ  +SP+ SP ASPPLVSSPRISELHELPRPP   ++KP      VGH
Sbjct: 488 -VSGGFSRLPVPQP-SSPKASPNASPPLVSSPRISELHELPRPPGNQSSKPR-----VGH 540

Query: 458 SAPLMFRNQEHTSTNKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVS--KFLE 515
           SAPL+ +N E   TNK PS+    ASPLP PP  VSRSFSIPSS Q+ +AL+VS  K+L+
Sbjct: 541 SAPLVLKNPEAAMTNKFPSVVLRAASPLPTPP--VSRSFSIPSSGQRVVALNVSNTKYLD 598

Query: 516 SPKVVEKSEGVSSPPLTPISLANVKPVSIVSEVSSQSAQNQ 556
           +P+V +  + V SPPLTP+S    +  S +S+++S S++ Q
Sbjct: 599 TPQVSKVDKAV-SPPLTPMS----QRASNISDLASHSSEIQ 634

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570208|ref|XP_003553282.1| PREDICTED: uncharacterized protein At2g33490-like [Glycine max]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 330/563 (58%), Positives = 408/563 (72%), Gaps = 45/563 (7%)

Query: 1   MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQR 60
           MLG VQ ELQKLVD+YRS+I LTITNPSESLLNELRTVEDMKRQCDEKRNV EY++AQQ+
Sbjct: 93  MLGSVQLELQKLVDSYRSHIVLTITNPSESLLNELRTVEDMKRQCDEKRNVYEYMIAQQK 152

Query: 61  EKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQL 120
           EKGKSKSGKGES +LQQ LQAA+ EYEEEA LC FRLKSLKQGQ RSLLTQAARHHAAQL
Sbjct: 153 EKGKSKSGKGESFTLQQ-LQAAHAEYEEEATLCAFRLKSLKQGQSRSLLTQAARHHAAQL 211

Query: 121 NFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGEDGEDSYYAN----EAGELSFD 176
           NFFRKG KSLEAV+ HVR++A RQHIDYQFSGLED+ GE   +    +    E GELSFD
Sbjct: 212 NFFRKGLKSLEAVEPHVRMIAVRQHIDYQFSGLEDDGGESDNNDDGNDFDIIEGGELSFD 271

Query: 177 YRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGEYQASHRERRGSSFS 236
           YR NKQG  +VSTS  + EV++   S+ +AST E AE +LDKN G+++ S+R    SS+S
Sbjct: 272 YRANKQGPYIVSTSPNTAEVEESGCSYVRASTPETAETSLDKNQGDFKVSNRV---SSYS 328

Query: 237 APIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVPISSSVAPRTRPSNPSGRTYN 296
           API  E+K DPAE++RQ+  SSA + + YVLPTP++ K   +SS AP     + SG  +N
Sbjct: 329 APILAEKKFDPAEKVRQLLASSAAKSNAYVLPTPVNIKETKTSS-APHI---SASGSLHN 384

Query: 297 LSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNNASTR-PPPLRDGLALPQLDT 355
           L HSSPL++KK ++D  D+ LSE +  ++ S+LKES+S+   T+ P P  DGL+ PQ+D 
Sbjct: 385 LWHSSPLDEKKNEKDV-DSKLSEPTIPRAHSVLKESNSDTTYTQLPRPSADGLSPPQVDL 443

Query: 356 LNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITYTELPQIVSGLLSHAPVPQTKTSP 415
            +++DTKKIK QA SGPLT+K  S KP                VSG     PVPQ  +SP
Sbjct: 444 FSATDTKKIKRQAFSGPLTNKPLSVKP----------------VSGGFPRLPVPQ-PSSP 486

Query: 416 RVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNP 475
           + SP ASPPLVSSPRISELHELPRPP   ++KP      VGHSAPL+ +N E   TNK P
Sbjct: 487 KASPNASPPLVSSPRISELHELPRPPGNQSSKPR-----VGHSAPLVLKNPEAAMTNKFP 541

Query: 476 SMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVS--KFLESPKVVEKSEGVSSPPLTP 533
           S+    ASPLP PP  VSRSFSIPSS Q+ +AL+VS  K+L++P+V +  + V SPPLTP
Sbjct: 542 SVVFSAASPLPTPP--VSRSFSIPSSGQRVVALNVSNTKYLDTPQVSKVDKAV-SPPLTP 598

Query: 534 ISLANVKPVSIVSEVSSQSAQNQ 556
           +S    +  S +S+++S S++ Q
Sbjct: 599 MS----QRASNISDLASHSSEIQ 617

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508303|ref|XP_003624440.1| hypothetical protein MTR_7g083240 [Medicago truncatula] gi|355499455|gb|AES80658.1| hypothetical protein MTR_7g083240 [Medicago truncatula]

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 327/565 (57%), Positives = 408/565 (72%), Gaps = 43/565 (7%)

Query: 1   MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQR 60
           MLG VQ +LQKLVD YRS++ LTIT PSESLLNELRTVEDMKRQCDEKR V EY++AQQ+
Sbjct: 92  MLGNVQLDLQKLVDGYRSHVALTITRPSESLLNELRTVEDMKRQCDEKREVYEYMIAQQK 151

Query: 61  EKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQL 120
           EKGKSKSGKGE+++  Q L+AA+DEYEEEA LC FRLKSLKQGQ RSLLTQAARHHAAQL
Sbjct: 152 EKGKSKSGKGENIT-SQHLKAAHDEYEEEATLCAFRLKSLKQGQSRSLLTQAARHHAAQL 210

Query: 121 NFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGE-----DG-EDSYYANEAGELS 174
           NFFRKG KSLEAV+ HVR+VAE QHIDYQFSGLED+DGE     DG E  Y A E GELS
Sbjct: 211 NFFRKGLKSLEAVEPHVRMVAELQHIDYQFSGLEDDDGEGSFEYDGNEYEYEATEGGELS 270

Query: 175 FDYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGEYQASHRE-RRGS 233
           F+YR NK     V TS  S EV++ D S  +AST E AE +LDK+  +++ S+R+  R S
Sbjct: 271 FNYRSNKD----VPTSPNSAEVEESDRSNIRASTTETAETSLDKSHVDFKVSNRDPPRVS 326

Query: 234 SFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVPISSSVAPRTRPSNPSGR 293
           S+SAPIF E+K DPAE++RQ+  SSA +P+ YVLP P++ K    +  APR    + S  
Sbjct: 327 SYSAPIFAEKKFDPAEKVRQLLSSSAAKPNAYVLPLPVNIK---ETKTAPRL---SASAS 380

Query: 294 TYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNNASTR-PPPLRDGLALPQ 352
           +++L HSSPL++KK  +D+ D  LSE   +   S+LKES+S+ +S + P P  +G +LPQ
Sbjct: 381 SHDLWHSSPLDEKKNGKDFADGKLSE-PAIPRVSILKESNSDTSSAQLPRPSTEGQSLPQ 439

Query: 353 LDTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITYTELPQIVSGLLSHAPVPQTK 412
           +D  N+SD KKIK  A SGPLT+K  S KP                VSG  S  P+PQ  
Sbjct: 440 VDIFNASDHKKIKRHAFSGPLTNKPLSVKP----------------VSGGFSRLPMPQP- 482

Query: 413 TSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTN 472
           +SP+ SP ASPPLVSSPRISELHELPRPP    +K  KSS  VGHSAPL  RN EH +TN
Sbjct: 483 SSPKASPGASPPLVSSPRISELHELPRPPGNQTSKATKSSR-VGHSAPLGLRNPEHPTTN 541

Query: 473 KNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVS-KFLESPKVVEKSEGVSSPPL 531
           K P + S +ASPLP PP+ VSRSFSIPSSSQ+A+ ++V+ K+L + ++ EK E  +SPPL
Sbjct: 542 KFPPVVSSSASPLPTPPITVSRSFSIPSSSQRAVVINVANKYLHTHQIPEKVEEAASPPL 601

Query: 532 TPISLANVKPVSIVSEVSSQSAQNQ 556
           TP+S    +  S +S+++S+S++ Q
Sbjct: 602 TPLS----QRASALSDLASRSSEIQ 622

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088724|emb|CBI38174.3| unnamed protein product [Vitis vinifera]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 290/553 (52%), Positives = 381/553 (68%), Gaps = 14/553 (2%)

Query: 2   LGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQRE 61
           LG+VQ+ELQKLVD+YRS+IF TI  PSESLL ELRTVE+MKRQCDEKR+V EY++ +QRE
Sbjct: 94  LGKVQYELQKLVDSYRSHIFQTIVTPSESLLKELRTVEEMKRQCDEKRDVYEYMITRQRE 153

Query: 62  KGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLN 121
           KG+S+SG+GE+ S   Q+QAA DEY+EEA L VFRLKSLKQGQ RSLLTQA+RHHAAQL+
Sbjct: 154 KGRSRSGRGETFS-SHQVQAACDEYDEEATLFVFRLKSLKQGQSRSLLTQASRHHAAQLS 212

Query: 122 FFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLE-DNDGEDGEDSYYANEAGELSFDYRDN 180
           FFRK  KSLE ++ HV+LV E+QHIDY+FSGLE D+  +  +D  Y    G+LSFDY   
Sbjct: 213 FFRKALKSLEVIEPHVKLVTEQQHIDYKFSGLEDDDWDDGEDDDDYDGHDGDLSFDYGQI 272

Query: 181 KQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGEYQASHRERRGSSFSAPIF 240
               D VST+R SME+D  D++FPQ +T+++ + NLDK+  +  A + E R  S SAP+F
Sbjct: 273 DHEQDFVSTARNSMELDQEDLTFPQVATMDSVKENLDKSYVDSFAINSESRKISQSAPLF 332

Query: 241 PERKIDPAERIRQVQQSSARQPSTYVLPTPIDAK--VPISSSVAPRTR--PSNPSGRTYN 296
            E+K D A  +R+++  S R+  TYVLPTP D K   P  S  +P +R  P++ SGR +N
Sbjct: 333 AEKKFDSA-WMREMRPLSTRKLRTYVLPTPDDTKSSAPTRSD-SPDSRPIPTSLSGRPHN 390

Query: 297 LSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNNAST-RPPPLRDGLALPQLDT 355
           L HSSPLE K E +  GD  + E + + +QS+LKES++N+ S+  PPPL DGL    +++
Sbjct: 391 LWHSSPLEPKYE-KILGDDKVFESTAMNAQSVLKESNTNHVSSGLPPPLVDGLPFRMINS 449

Query: 356 LNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITYTELPQIVSG--LLSHAPVPQTKT 413
              SDTKK+K  A SGPLT    S+KP LS+S P+     PQ+ SG  L S  P   + +
Sbjct: 450 SVVSDTKKVKRYAFSGPLTRNPWSTKPGLSASDPLVSVTQPQLFSGPLLRSQMPHLSSSS 509

Query: 414 SPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNK 473
           SP      + P +SSP+I+ELHELPRPP++   KP++ S L+GHSAPL+      ++TNK
Sbjct: 510 SPPRVSPIASPFLSSPKINELHELPRPPSSLTLKPSRPSSLIGHSAPLVASGPNLSATNK 569

Query: 474 NPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVSKFLESPKVVEKSEGVSSPPLTP 533
              + S TAS LP+P   V RS S PSS QK     VS   E+P+  E +E V+SPPLTP
Sbjct: 570 --LVVSSTASRLPLPLQAVPRSLSTPSSGQKLKIPRVSGPSEAPQNSEMAENVTSPPLTP 627

Query: 534 ISLANVKPVSIVS 546
           ISL+N++P S  S
Sbjct: 628 ISLSNIQPASTSS 640

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425164|ref|XP_002263726.1| PREDICTED: uncharacterized protein At2g33490-like [Vitis vinifera]

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 290/555 (52%), Positives = 382/555 (68%), Gaps = 16/555 (2%)

Query: 2   LGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQRE 61
           LG+VQ+ELQKLVD+YRS+IF TI  PSESLL ELRTVE+MKRQCDEKR+V EY++ +QRE
Sbjct: 94  LGKVQYELQKLVDSYRSHIFQTIVTPSESLLKELRTVEEMKRQCDEKRDVYEYMITRQRE 153

Query: 62  KGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLN 121
           KG+S+SG+GE+ S   Q+QAA DEY+EEA L VFRLKSLKQGQ RSLLTQA+RHHAAQL+
Sbjct: 154 KGRSRSGRGETFS-SHQVQAACDEYDEEATLFVFRLKSLKQGQSRSLLTQASRHHAAQLS 212

Query: 122 FFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLE-DNDGEDGEDSYYANEAGELSFDYRDN 180
           FFRK  KSLE ++ HV+LV E+QHIDY+FSGLE D+  +  +D  Y    G+LSFDY   
Sbjct: 213 FFRKALKSLEVIEPHVKLVTEQQHIDYKFSGLEDDDWDDGEDDDDYDGHDGDLSFDYGQI 272

Query: 181 KQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEV--NLDKNPGEYQASHRERRGSSFSAP 238
               D VST+R SME+D  D++FPQ +T+++ ++  NLDK+  +  A + E R  S SAP
Sbjct: 273 DHEQDFVSTARNSMELDQEDLTFPQVATMDSVKLQENLDKSYVDSFAINSESRKISQSAP 332

Query: 239 IFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAK--VPISSSVAPRTR--PSNPSGRT 294
           +F E+K D A  +R+++  S R+  TYVLPTP D K   P  S  +P +R  P++ SGR 
Sbjct: 333 LFAEKKFDSA-WMREMRPLSTRKLRTYVLPTPDDTKSSAPTRSD-SPDSRPIPTSLSGRP 390

Query: 295 YNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNNAST-RPPPLRDGLALPQL 353
           +NL HSSPLE K E +  GD  + E + + +QS+LKES++N+ S+  PPPL DGL    +
Sbjct: 391 HNLWHSSPLEPKYE-KILGDDKVFESTAMNAQSVLKESNTNHVSSGLPPPLVDGLPFRMI 449

Query: 354 DTLNSSDTKKIKTQASSGPLTSKSSSSKPALSSSGPITYTELPQIVSG--LLSHAPVPQT 411
           ++   SDTKK+K  A SGPLT    S+KP LS+S P+     PQ+ SG  L S  P   +
Sbjct: 450 NSSVVSDTKKVKRYAFSGPLTRNPWSTKPGLSASDPLVSVTQPQLFSGPLLRSQMPHLSS 509

Query: 412 KTSPRVSPTASPPLVSSPRISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTST 471
            +SP      + P +SSP+I+ELHELPRPP++   KP++ S L+GHSAPL+      ++T
Sbjct: 510 SSSPPRVSPIASPFLSSPKINELHELPRPPSSLTLKPSRPSSLIGHSAPLVASGPNLSAT 569

Query: 472 NKNPSMASYTASPLPIPPLIVSRSFSIPSSSQKAMALHVSKFLESPKVVEKSEGVSSPPL 531
           NK   + S TAS LP+P   V RS S PSS QK     VS   E+P+  E +E V+SPPL
Sbjct: 570 NK--LVVSSTASRLPLPLQAVPRSLSTPSSGQKLKIPRVSGPSEAPQNSEMAENVTSPPL 627

Query: 532 TPISLANVKPVSIVS 546
           TPISL+N++P S  S
Sbjct: 628 TPISLSNIQPASTSS 642

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	557
TAIR|locus:2088389	614	AT3G26910 "AT3G26910" [Arabido	0.556	0.504	0.457	8.9e-94
TAIR|locus:2051058	623	AT2G33490 "AT2G33490" [Arabido	0.755	0.675	0.440	1e-77
TAIR|locus:2163061	586	AT5G41100 "AT5G41100" [Arabido	0.551	0.523	0.476	3.7e-70
ASPGD|ASPL0000012800	961	chiA [Emericella nidulans (tax	0.441	0.255	0.247	0.0007

TAIR|locus:2088389 AT3G26910 "AT3G26910" [Arabidopsis thaliana (taxid:3702)]

 Score = 652 (234.6 bits), Expect = 8.9e-94, Sum P(2) = 8.9e-94
 Identities = 150/328 (45%), Positives = 199/328 (60%)

Query:     1 MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQR 60
             MLG+VQ ELQ+L+D YRS+IF TIT+PSE+LL +LR VEDMK+QCD KRNV E  + +++
Sbjct:    94 MLGKVQSELQRLLDTYRSHIFETITSPSEALLKDLRYVEDMKQQCDGKRNVYEMSLVKEK 153

Query:    61 XXXXXXXXXXXXVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQL 120
                           +  + + A  E+ +EA +C+FRLKSLK+GQ RSLL QA RHH AQ+
Sbjct:   154 GRPKSSKGERH---IPPESRPAYSEFHDEATMCIFRLKSLKEGQARSLLIQAVRHHTAQM 210

Query:   121 NFFRKGFKSLEAVDTHVRLVAERQHIDYQFSXXXXXXXXXXXXS---YYANEAGELSFDY 177
               F  G KSLEAV+ HV++  E+QHID   S                 Y N  GELSFDY
Sbjct:   211 RLFHTGLKSLEAVERHVKVAVEKQHIDCDLSVHGNEMEASEDDDDDGRYMNREGELSFDY 270

Query:   178 RDNKQGLDVVSTSRK-SMEVDDVDVSFPQASTVENAEVNLDKNPGEYQASHRERRGSSFS 236
             R N+Q ++  S S   + ++DD D+SFP+ ST   A VN D    EY  S R++  SS S
Sbjct:   271 RTNEQKVEASSLSTPWATKMDDTDLSFPRPSTTRPAAVNADHRE-EYPVSTRDKYLSSHS 329

Query:   237 APIFPERKIDPAERIRQVQQSSARQPSTYVLPTPIDAKV--PISSSVAPRTRPSNPSGRT 294
             AP+FPE+K D +ER+RQ   S     + YVLPTP D++   P+S ++ PR  P+N S   
Sbjct:   330 APLFPEKKPDVSERLRQANPSF----NAYVLPTPNDSRYSKPVSQALNPR--PTNHSAG- 382

Query:   295 YNLSHSSPLEQKKEDRDYGDAHLSEHSG 322
              N+ HSSPLE  K  +D  DA  +   G
Sbjct:   383 -NIWHSSPLEPIKSGKDGKDAESNSFYG 409

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2051058 AT2G33490 "AT2G33490" [Arabidopsis thaliana (taxid:3702)]

 Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
 Identities = 207/470 (44%), Positives = 270/470 (57%)

Query:     1 MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQR 60
             MLG++QFELQKLVD YRS+IF TIT PSESLLNELR VE+M+R CDEKRNV E ++ +QR
Sbjct:    92 MLGKLQFELQKLVDKYRSHIFQTITIPSESLLNELRIVEEMQRLCDEKRNVYEGMLTRQR 151

Query:    61 XXXXXXXXXXXXVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQL 120
                          S  QQLQ A+D+YE E  L VFRLKSLKQGQ RSLLTQAARHHAAQL
Sbjct:   152 EKGRSKGGKGETFS-PQQLQEAHDDYENETTLFVFRLKSLKQGQTRSLLTQAARHHAAQL 210

Query:   121 NFFRKGFKSLEAVDTHVRLVAERQHIDYQFSXXXXXXXXXXXXSYY-----ANEAGELSF 175
              FF+K   SLE VD HV++V E QHIDY FS            +        ++ GELSF
Sbjct:   211 CFFKKALSSLEEVDPHVQMVTESQHIDYHFSGLEDDDGDDEIENNENDGSEVHDDGELSF 270

Query:   176 DYRDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGEYQASH---RERRG 232
             +YR N +  D  S++  S E+ + D++FPQ      A+ N +   G Y+ SH   R+ R 
Sbjct:   271 EYRVNDKDQDADSSAGGSSELGNSDITFPQIGGPYTAQENEE---GNYRKSHSFRRDVRA 327

Query:   233 SSFSAPIFPE-RKIDPAERIRQVQQSSARQPSTYVLPTPIDAKVPISSSVAPRTR---PS 288
              S SAP+FPE R   P+E++ +++ +  R+ +TY LPTP++     SS+ +P  +    S
Sbjct:   328 VSQSAPLFPENRTTPPSEKLLRMRSTLTRKFNTYALPTPVETTRSPSSTTSPGHKNVGSS 387

Query:   289 NPSGR-TYNLSHSSPLEQKKEDRDYGDAHLSEHS--GLKSQSLLKESDSNNASTRPPPLR 345
             NP+   T  + +SSPLE +      G A +S  S   LK Q +L+ES+ N  S  PPPL 
Sbjct:   388 NPTKAITKQIWYSSPLETR------GPAKVSSRSMVALKEQ-VLRESNKNT-SRLPPPLA 439

Query:   346 DGLALPQLDTLNSSDTKKIKTQXXXXXXXXXXXXXXXXXXXXXPITYTELPQIVSGLLSH 405
             DGL   +L TL         T                      P++ T    + SG +  
Sbjct:   440 DGLLFSRLGTLKRRSFSGPLTSKPLPNK---------------PLSTTS--HLYSGPIPR 482

Query:   406 APVPQTKTSPRVS--PTASPPLVSSPRISELHELPRPPNAFATKPAKSSG 453
              PV +    P+VS  PTASP  VS+P+ISELHELPRPP   +TK ++  G
Sbjct:   483 NPVSKL---PKVSSSPTASPTFVSTPKISELHELPRPPPRSSTKSSRELG 529

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2163061 AT5G41100 "AT5G41100" [Arabidopsis thaliana (taxid:3702)]

 Score = 690 (248.0 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
 Identities = 153/321 (47%), Positives = 209/321 (65%)

Query:     1 MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQR 60
             MLG+VQFEL+KLVD YRS IF TIT PSESLL++LRTVEDMK+QC+EKR+V ++++ +  
Sbjct:    93 MLGKVQFELKKLVDTYRSQIFKTITRPSESLLSDLRTVEDMKQQCEEKRDVVKHMLMEHV 152

Query:    61 XXXXXXXXXXXXVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQL 120
                           +++QL+ A DE ++EA LC+FRLKSLK+GQ RSLLTQAARHH AQ+
Sbjct:   153 KDKVQVKGTKGERLIRRQLETARDELQDEATLCIFRLKSLKEGQARSLLTQAARHHTAQM 212

Query:   121 NFFRKGFKSLEAVDTHVRLVAERQHIDYQFSXXXXX---XXXXXXXSYYANEAGELSFDY 177
             + F  G KSLEAV+ HVR+ A+RQHID   S                   N  GELSFDY
Sbjct:   213 HMFFAGLKSLEAVEQHVRIAADRQHIDCVLSDPGNEMDCSEDNDDDDRLVNRDGELSFDY 272

Query:   178 RDNKQGLDVVSTSRKSMEVDDVDVSFPQASTVENAEVNLDKNPGEYQASHRERRGSSFSA 237
               ++Q ++V+ST   SM++DD D+SF + S   +A VN D    E+  S+R+RR SS SA
Sbjct:   273 ITSEQRVEVISTPHGSMKMDDTDLSFQRPSPAGSATVNADPRE-EHSVSNRDRRTSSHSA 331

Query:   238 PIFPERKIDPAER-IRQVQQSSARQPSTYVLPTPIDAKVPISSSVAPRTRPSNPSGRTYN 296
             P+FP++K D A+R +RQ+  S+    + Y+LPTP+D+K   SS +   T+P   +  + N
Sbjct:   332 PLFPDKKADLADRSMRQMTPSA----NAYILPTPVDSK---SSPIF--TKPVTQTNHSAN 382

Query:   297 LSHSSPLEQKKEDRDYGDAHL 317
             L HSSPLE  K      +++L
Sbjct:   383 LWHSSPLEPIKTAHKDAESNL 403

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

ASPGD|ASPL0000012800 chiA [Emericella nidulans (taxid:162425)]

 Score = 122 (48.0 bits), Expect = 0.00070, P = 0.00070
 Identities = 65/263 (24%), Positives = 100/263 (38%)

Query:   233 SSFSAPIFPERKIDPAERIRQVQQSSARQPSTYVLP-TPIDAKVPISSSVAP--RTRPSN 289
             SS +  + P  K  P+E     + SS    ST V+  TP + K P SSS  P   + P  
Sbjct:   413 SSTTETVTPSPKPSPSESSTTSETSSLPSTSTPVVSETPSETKTPTSSSAPPLSSSSPVG 472

Query:   290 PSGRTYNLSHSSPLEQKKEDRDYGDAHLSEHSGLKSQSLLKESDSNNASTRPPPLRDGLA 349
              S  T + S S+P E          +  S H    + S   E+    +ST  P      +
Sbjct:   473 GSSSTASSSTSTPSETPSASSTRAVSETSTHISTSTSSG-PETSLTGSSTSVPATSS--S 529

Query:   350 LPQLDTLNSSDTKKIKTQXXXXXXXXXXXXXXXXXXXXXPITYTELPQIVSGLLSHAPVP 409
             +P    ++ S T  I                          T T+  +  + + +H+   
Sbjct:   530 VPS-SAISPSSTPVISETPRPPVTSSSSSTFVSSTS-----TSTDCSESSTAIGTHSSSS 583

Query:   410 QTKTSPRVSPTASPPLVSSPRISE-LHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEH 468
              ++T    +P ASP   +SP  ++ L   P P ++ +T    +S L   S P        
Sbjct:   584 ISETPSASTPAASPS--TSPETTKTLTVFPTPGSSVSTGTTSASTL-SSSVPATSGGHTE 640

Query:   469 TSTNKNPSMASYTASPLPIPPLI 491
             TST  + S A+ T S     PLI
Sbjct:   641 TST-VSTSSANQTPSASTSKPLI 662


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.126   0.348    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      557       502   0.00085  119 3  11 23  0.47    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  244 KB (2131 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  54.25u 0.12s 54.37t   Elapsed:  00:00:02
  Total cpu time:  54.25u 0.12s 54.37t   Elapsed:  00:00:02
  Start:  Fri May 10 12:03:18 2013   End:  Fri May 10 12:03:20 2013

GO:0004568 "chitinase activity" evidence=ISS;RCA

GO:0006032 "chitin catabolic process" evidence=ISS;RCA

GO:0043169 "cation binding" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0001896 "autolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_880057 hypothetical protein (625 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	557
cd07307	194	cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain	2e-17

>gnl|CDD|153271 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

 Score = 80.2 bits (198), Expect = 2e-17
 Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 11/142 (7%)

Query: 1   MLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQ 59
             G++Q EL++  D     +   +  P +  L  +L+ ++  +++ D+ R   +Y  A++
Sbjct: 58  KFGKIQKELEEFRDQLEQKLENKVIEPLKEYLKKDLKEIKKRRKKLDKARL--DYDAARE 115

Query: 60  REKGKSKSGKGESV--SLQQQLQAANDEYEEEARLCVFRLKSLKQGQ---YRSLLTQAAR 114
           + K   K  K  S     +++LQ A ++YEE     +  L  L++ +   + SLL     
Sbjct: 116 KLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLNKLEEKRKELFLSLLLSFIE 175

Query: 115 HHAAQLNFFRKGFKSLEAVDTH 136
               Q  FF++  K LE +  +
Sbjct: 176 A---QSEFFKEVLKILEQLLPY 194

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-BAR domain and is present in Pombe/Cdc15 homology (PCH) family proteins, which include Fes/Fes tyrosine kinases, PACSIN or syndapin, CIP4-like proteins, and srGAPs, among others. The Inverse (I)-BAR or IRSp53/MIM homology Domain (IMD) is found in multi-domain proteins, such as IRSp53 and MIM, that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The I-BAR domain induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. BAR domains that also serve as protein interaction domains include those of arfaptin and OPHN1-like proteins, among others, which bind to Rac and Rho GAP domains, respectively. Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	557
cd07642	215	BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of	100.0
cd07604	215	BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of	99.92
cd07307	194	BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri	99.22
PF03114	229	BAR: BAR domain; InterPro: IPR004148 Endocytosis a	98.76
smart00721	239	BAR BAR domain.	97.81
cd07603	200	BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of	97.41
cd07634	207	BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domai	97.18
cd07640	213	BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of	97.18
cd07641	215	BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of	97.13
cd07637	200	BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of	96.58
cd07593	215	BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) dom	96.56
cd07594	229	BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) dom	96.44
cd07606	202	BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain	96.41
cd07639	200	BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of	96.02
cd07601	215	BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of A	95.91
KOG1118	366	consensus Lysophosphatidic acid acyltransferase en	95.85
cd07614	223	BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) do	95.46
cd07615	223	BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) do	95.01
cd07592	223	BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) dom	94.97
cd07635	207	BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of	94.8
cd07602	207	BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR	93.94
cd07631	215	BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of	93.71
cd07616	229	BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) do	93.38
cd07600	242	BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of	93.11
cd07595	244	BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR)	92.99
cd07638	200	BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of	91.47
KOG0521	785	consensus Putative GTPase activating proteins (GAP	90.64
cd07613	223	BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) do	90.36
cd07636	207	BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of G	88.7
cd07590	225	BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of B	87.31
cd07632	215	BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of	85.01
cd07617	220	BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) do	83.91

>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2

Probab=100.00  E-value=4.1e-37  Score=296.12  Aligned_cols=136  Identities=24%  Similarity=0.328  Sum_probs=132.5

Q ss_pred             CcchhhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhH-HHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccc----
Q 008674            1 MLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTV-EDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVS----   74 (557)
Q Consensus         1 mLGKvQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtV-EEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s----   74 (557)
                      |+|++|+||++|++.|+.||++||+.|+++||| |||+| ||||+|||++|+.||+|++ +.||++.|++|++.++    
T Consensus        67 kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~dLr~vK~d~KK~fdK~~~dyE~~~~-k~ek~~r~~~K~~~~~~~e~  145 (215)
T cd07642          67 KFSVFTKELTALFKNLVQNMNNIITFPLDSLLKGDLKGVKGDLKKPFDKAWKDYETKVT-KIEKEKKEHAKMHGMIRTEI  145 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccccchhcc
Confidence            689999999999999999999999999999999 99999 7999999999999999996 9999999999999986    


Q ss_pred             -----hHHHHHHHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHH
Q 008674           75 -----LQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVR  138 (557)
Q Consensus        75 -----~q~QLq~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk  138 (557)
                           .+ +|++++..||.+|+.|+|++++||+||.++||+++++||+||++||++|+|+||++|||++
T Consensus       146 ~~~E~ae-~l~~~R~~fq~~a~dYv~~in~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~~  213 (215)
T cd07642         146 SGAEIAE-EMEKERRFFQLQMCEYLLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSIE  213 (215)
T ss_pred             chhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                 67 9999999999999999999999999999999999999999999999999999999999986

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i

>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins

Probab=99.92  E-value=2.4e-25  Score=213.80  Aligned_cols=136  Identities=21%  Similarity=0.265  Sum_probs=128.9

Q ss_pred             CcchhhHHHHHHHhhhhccceeeccCCcHHHHHH-hhhH-HHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCcc-----
Q 008674            1 MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNE-LRTV-EDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV-----   73 (557)
Q Consensus         1 mLGKvQfELqKlvD~YRshI~~TIT~PSESLLnE-LrtV-EEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~-----   73 (557)
                      ++|++++||.++.+.|++||.++|+.|.++++|| |+.| +|||++||.+++.||.++ .+.+|+|.+.+|++.+     
T Consensus        67 kF~~~l~El~~~~~~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~-~k~~k~Kk~~~~~~~~~r~e~  145 (215)
T cd07604          67 KFSVFTKELAALFKNLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKA-SKIEKEKKQLAKEAGMIRTEI  145 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHhccchhhhhhhhcchhh
Confidence            4789999999999999999999999999999999 9997 699999999999999996 7889999999977633     


Q ss_pred             ----chHHHHHHHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHH
Q 008674           74 ----SLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVR  138 (557)
Q Consensus        74 ----s~q~QLq~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk  138 (557)
                          +.+ ||+.++..|+++|..|||+|+.|+++|..++|++++++|.||++||++|++.||++|||++
T Consensus       146 ~~~e~~~-~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~~  213 (215)
T cd07604         146 TGAEIAE-EMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYIE  213 (215)
T ss_pred             hhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence                466 9999999999999999999999999999999999999999999999999999999999986

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate

>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

Probab=99.22  E-value=2.6e-11  Score=104.89  Aligned_cols=132  Identities=22%  Similarity=0.327  Sum_probs=112.6

Q ss_pred             cchhhHHHHHHHhhhhccceeeccCCcHHHH-HHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHH
Q 008674            2 LGEVQFELQKLVDNYRSNIFLTITNPSESLL-NELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQ   80 (557)
Q Consensus         2 LGKvQfELqKlvD~YRshI~~TIT~PSESLL-nELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq   80 (557)
                      +|.++.+|..+.+.|...|..+|..|-+.++ .++..+.+++++||.+|.-|+.+++.+..-.+.+..-++-...+++++
T Consensus        59 ~~~~~~~l~~~~~~~~~~~~~~v~~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~  138 (194)
T cd07307          59 FGKIQKELEEFRDQLEQKLENKVIEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQ  138 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHH
Confidence            5889999999999999999999999999999 999999999999999999999999876654433211112233455999


Q ss_pred             HHHHHHHHhHhhhhhhhccccccch---hhHHHHHHHHHHHHHHhHHhhccchhhhhhH
Q 008674           81 AANDEYEEEARLCVFRLKSLKQGQY---RSLLTQAARHHAAQLNFFRKGFKSLEAVDTH  136 (557)
Q Consensus        81 ~a~~EY~EeAtLfvFRLKSLKQGQ~---RSLLTQAARHHAAQL~fFrkgLKsLEavEPH  136 (557)
                      .|+++|+.-+..++..|..|.+++.   ..+|++-+.+   |+.||.+|++.++.+.||
T Consensus       139 ~ar~~y~~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~---q~~~~~~~~~~~~~l~~~  194 (194)
T cd07307         139 EAKEKYEELREELIEDLNKLEEKRKELFLSLLLSFIEA---QSEFFKEVLKILEQLLPY  194 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHhHHHHHHhhcCC
Confidence            9999999999999999999999996   6777766655   999999999999999885

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-

>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment

Probab=98.76  E-value=2.3e-08  Score=89.91  Aligned_cols=132  Identities=21%  Similarity=0.312  Sum_probs=115.5

Q ss_pred             cchhhHHHHHHHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHH
Q 008674            2 LGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQA   81 (557)
Q Consensus         2 LGKvQfELqKlvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq~   81 (557)
                      +|+++-+|..+.+.|...|-.+|..|-+.+++++..|.++++.||.||.-|+..+.. -+|.+.+.++.+.   ++.++.
T Consensus        97 ~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~~k-~~k~~~~~~~~~~---~~~l~~  172 (229)
T PF03114_consen   97 FGEAMQEIEEARKELESQIESTVIDPLKEFLKEFKEIKKLIKKREKKRLDYDSARSK-LEKLRKKKSKSSK---EEKLEE  172 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCHTTSSBTHH---HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhccccc---HHHHHH
Confidence            578888999999999999999999999999999999999999999999999998744 4555655555544   449999


Q ss_pred             HHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHH
Q 008674           82 ANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHV  137 (557)
Q Consensus        82 a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHV  137 (557)
                      |..+|+.....+.-.|-.|-.....-+.+.-..--.+|+.||++++.-|+.|+|.+
T Consensus       173 a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~~l  228 (229)
T PF03114_consen  173 AKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQPQL  228 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999998887755558888888999999999999999999875

Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....

>smart00721 BAR BAR domain

Probab=97.81  E-value=0.00012  Score=68.12  Aligned_cols=133  Identities=20%  Similarity=0.272  Sum_probs=94.3

Q ss_pred             chhhHHHHHHHhhhhccceee-ccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHH---HhhcCCCCCCCCccchHHH
Q 008674            3 GEVQFELQKLVDNYRSNIFLT-ITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQ---REKGKSKSGKGESVSLQQQ   78 (557)
Q Consensus         3 GKvQfELqKlvD~YRshI~~T-IT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~---~eKGrsk~~KgEs~s~q~Q   78 (557)
                      |.++-++-.+.+.+ ..|..+ |..|-.-+.+++..+.+..+.++.||.-|+..++.+   +.+++ +..+-+-...+++
T Consensus       101 ~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~~-~~~~~kl~~~e~e  178 (239)
T smart00721      101 GEALKKLLQVEESL-SQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLKKAKKSKE-KKKDEKLAKAEEE  178 (239)
T ss_pred             HHHHHHHHhhHHHH-HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-CChhhhhhhHHHH
Confidence            44444444444455 555555 555556666999999999999999999999998653   22222 1111123335558


Q ss_pred             HHHHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHH
Q 008674           79 LQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHV  137 (557)
Q Consensus        79 Lq~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHV  137 (557)
                      |+.|.++|++-...++=.|..|-+...-.++.+=..-..||+.||+++.+.|+.|.+.+
T Consensus       179 l~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l  237 (239)
T smart00721      179 LRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLLQQLQQQL  237 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999997777777777776666555566666778899999999999999998865

>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins

Probab=97.41  E-value=0.00038  Score=67.27  Aligned_cols=130  Identities=15%  Similarity=0.271  Sum_probs=105.8

Q ss_pred             hhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHHHH
Q 008674            5 VQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAAN   83 (557)
Q Consensus         5 vQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq~a~   83 (557)
                      +=-||..+......++-.+|..|-+++++ +|+.|-|.|+..|.-.+-|+..++.+-.=.|+|  ..|---...||.+++
T Consensus        69 ~l~el~~~~~~L~~q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k~~~~~K~K--~~~~~Ea~~~L~~~R  146 (200)
T cd07603          69 ALQEMNNFHTILLDQAQRTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNALVKNAQAPRSK--PQEAEEATNILTATR  146 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHHHH
Confidence            33466666667777888999999888886 599999999999999999999987655444444  223333345999999


Q ss_pred             HHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhH
Q 008674           84 DEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH  136 (557)
Q Consensus        84 ~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPH  136 (557)
                      -.|+..+.=+|+.|..+..-+--.+|---..-=-||++||+.|..-++.+||.
T Consensus       147 k~f~~~sldyv~~in~iq~kKk~e~le~ll~~~~A~~tff~qG~el~~dl~py  199 (200)
T cd07603         147 SCFRHTALDYVLQINVLQAKKRHEILSTLLSYMHAQFTFFHQGYDLLEDLEPY  199 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCc
Confidence            99999999999999999877777777777777889999999999999999986

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like

Probab=97.18  E-value=0.00092  Score=65.71  Aligned_cols=119  Identities=13%  Similarity=0.222  Sum_probs=97.1

Q ss_pred             hhccceeeccCCcHHHHHH-hhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCC-ccchHHHHHHHHHHHHHhHhhh
Q 008674           16 YRSNIFLTITNPSESLLNE-LRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGE-SVSLQQQLQAANDEYEEEARLC   93 (557)
Q Consensus        16 YRshI~~TIT~PSESLLnE-LrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgE-s~s~q~QLq~a~~EY~EeAtLf   93 (557)
                      -..++-.+|..|-+++++| |+-|-|+|++.|.-.+-|+..+  .|...-+|+.|.. -.-..++|..++..|+..+-=.
T Consensus        86 L~~~~~~~l~~pL~~f~k~dl~~vKe~kK~FDK~se~y~~al--eK~l~l~~~kk~~~~~ea~~~l~~~R~~F~~~~ldY  163 (207)
T cd07634          86 LIQNANDVLIAPLEKFRKEQIGAAKDGKKKFDKESEKYYSIL--EKHLNLSAKKKESHLQRADTQIDREHQNFYEASLEY  163 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHhHHHHHH--HHHHhccccCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566788999999985 9999999999999999998854  6666777766653 3334459999999999999999


Q ss_pred             hhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhH
Q 008674           94 VFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH  136 (557)
Q Consensus        94 vFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPH  136 (557)
                      |+.|.-+..-+--.+|.--..---||+.||+.|..-|+.+||-
T Consensus       164 v~~i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~py  206 (207)
T cd07634         164 VFKIQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFAPY  206 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCC
Confidence            9999888777777777666677779999999999999999883

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain

>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3

Probab=97.18  E-value=0.0032  Score=62.42  Aligned_cols=134  Identities=19%  Similarity=0.275  Sum_probs=106.9

Q ss_pred             chhhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhHH-HHHHHhhhHHHHHHHHHHHH--HhhcCCCCC-----CCCcc
Q 008674            3 GEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVE-DMKRQCDEKRNVCEYVMAQQ--REKGKSKSG-----KGESV   73 (557)
Q Consensus         3 GKvQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtVE-EMKrQCDeKR~vYE~M~a~~--~eKGrsk~~-----KgEs~   73 (557)
                      ..++.||.-|..+-=.|+-+-|.-|=+++|| +|+-|- |+|++-|.=.+-||.-+...  -.|++.|-.     -+|- 
T Consensus        69 av~tkel~al~k~L~qn~nniv~fpldsflK~dlr~~K~D~KK~FeK~skDyE~kl~K~ak~~r~k~~~~g~~~~e~eE-  147 (213)
T cd07640          69 AVFTREVTALFKNLVQNLNNIVSFPLDSLLKGQLRDGRLESKKQMEKAWKDYEAKIGKLEKERREKQKQHGLIRLDMTD-  147 (213)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHhccccccchhcccccccHHH-
Confidence            4567899999999989999999999999998 599999 99999999999999977532  222222222     2222 


Q ss_pred             chHHHHHHHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHH
Q 008674           74 SLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVR  138 (557)
Q Consensus        74 s~q~QLq~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk  138 (557)
                      +.+ -|+..+-=||-.|.=+++-+.-|+--|--.+|.---.---||.+||..|+|.||.+.|-++
T Consensus       148 aae-~l~~eRr~Fql~acdYllkin~iq~KK~~diLq~Llsy~hAQ~~fFqqG~~~l~~l~pyik  211 (213)
T cd07640         148 TAE-DMQRERRNFQLHMCEYLLKAQESQMKQGPDFLQSLIKFFHAQHNFFQDGWKAAQNLGPFIE  211 (213)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence            234 7888888899888878887777777777778777777778999999999999999999876

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran

>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1

Probab=97.13  E-value=0.0023  Score=63.49  Aligned_cols=134  Identities=18%  Similarity=0.267  Sum_probs=103.0

Q ss_pred             hhhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhHH-HHHHHhhhHHHHHHHHHHHH--HhhcCCCCCCCCc------c
Q 008674            4 EVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVE-DMKRQCDEKRNVCEYVMAQQ--REKGKSKSGKGES------V   73 (557)
Q Consensus         4 KvQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtVE-EMKrQCDeKR~vYE~M~a~~--~eKGrsk~~KgEs------~   73 (557)
                      .+..||-.|--.-=.++-++|..|=+++|| +|+-|- |+|++-|.=++-||.-+..-  -.|-..|-.-.|.      -
T Consensus        70 ~~~~El~~~~k~L~~~~~~~v~~~L~~flK~Dlr~~K~d~KK~FdK~~kDye~k~~K~ek~~r~~~K~~e~~r~e~~~~E  149 (215)
T cd07641          70 TLTKELSTLLKNLLQGLSHNVIFTLDSLLKGDLKGVKGDLKKPFDKAWKDYETKFTKIEKEKREHAKQHGMIRTEITGAE  149 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHhhhhhhcCcccchhccccchh
Confidence            344566555544455666789999999997 599999 99999999999999987522  2221133333331      2


Q ss_pred             chHHHHHHHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHH
Q 008674           74 SLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVR  138 (557)
Q Consensus        74 s~q~QLq~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk  138 (557)
                      +.+ .|...+-=||-.|-=+++-+.-|+--|--.+|----.---||.+||..|++.||.++|-++
T Consensus       150 aa~-~l~~~Rr~Fq~~a~dYllqin~iq~Kk~~eiLq~ll~~~hAq~tfFqqG~~~~~~l~py~k  213 (215)
T cd07641         150 IAE-EMEKERRLFQLQMCEYLIKVNEIKTKKGVDLLQNLIKYYHAQCNFFQDGLKTADKLKQYIE  213 (215)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            356 8999999999999989998888887777778877777778999999999999999999886

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar

>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3

Probab=96.58  E-value=0.0083  Score=58.34  Aligned_cols=127  Identities=17%  Similarity=0.253  Sum_probs=97.1

Q ss_pred             HHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCcc-chHHHHHHHHHH
Q 008674            8 ELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV-SLQQQLQAANDE   85 (557)
Q Consensus         8 ELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~-s~q~QLq~a~~E   85 (557)
                      ||-........++=.+|..|-+.+++ +|+.|-|.|+..|.-++-|+..++.+   ...|..|...+ -...||.+++-.
T Consensus        72 ei~~~~~~l~~q~e~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~---~~~k~kk~~~l~Ea~~~L~~~Rk~  148 (200)
T cd07637          72 EMVNYHMILFDQAQRSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVKN---AQAPRHKPHEVEEATSTLTITRKC  148 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---hhcCCCChHHHHHHHHHHHHHHHH
Confidence            44444455556677788888888876 59999999999999999999987642   33442222111 112499999999


Q ss_pred             HHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHH
Q 008674           86 YEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHV  137 (557)
Q Consensus        86 Y~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHV  137 (557)
                      |...+.=+|+.|.-+..-+--.+|.--..-=-||+.||++|..-|+.+||++
T Consensus       149 f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~~~~~py~  200 (200)
T cd07637         149 FRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLLHELDPYM  200 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccC
Confidence            9999999999999887766666666666667799999999999999999963

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins

Probab=96.56  E-value=0.0084  Score=59.01  Aligned_cols=123  Identities=21%  Similarity=0.389  Sum_probs=92.4

Q ss_pred             cchhhHHHHHHHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHH
Q 008674            2 LGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQA   81 (557)
Q Consensus         2 LGKvQfELqKlvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq~   81 (557)
                      +|.+|.+|-..-+.|-..+-.++-.|=+..|+|+.++---.+.-+.||=-|++.++.++..      |.+....+.+|+.
T Consensus        80 ~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~~~k~i~k~RKkLe~rRLdyD~~ksk~~ka------k~~~~~~eeElr~  153 (215)
T cd07593          80 LGRAHCKIGTLQEEFADRLSDTFLANIERSLAEMKEYHSARKKLESRRLAYDAALTKSQKA------KKEDSRLEEELRR  153 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cccchhHHHHHHH
Confidence            5778888888878887788888888888777899988888899999999999998765533      1222345559999


Q ss_pred             HHHHHHHhHhhhhhhhcccccc---chhhHHHHHHHHHHHHHHhHHhhccchhhhh
Q 008674           82 ANDEYEEEARLCVFRLKSLKQG---QYRSLLTQAARHHAAQLNFFRKGFKSLEAVD  134 (557)
Q Consensus        82 a~~EY~EeAtLfvFRLKSLKQG---Q~RSLLTQAARHHAAQL~fFrkgLKsLEavE  134 (557)
                      |.++|++=.-.+.=++..++..   |-+.|..    ==.|||.||++....|+.|-
T Consensus       154 Ae~kfees~E~a~~~M~~i~~~e~e~~~~L~~----lv~AQl~Yh~q~~e~L~~l~  205 (215)
T cd07593         154 AKAKYEESSEDVEARMVAIKESEADQYRDLTD----LLDAELDYHQQSLDVLREVR  205 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            9999998777777777666653   3333322    22589999999999988763

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol

>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B

Probab=96.44  E-value=0.0096  Score=59.18  Aligned_cols=125  Identities=17%  Similarity=0.331  Sum_probs=94.2

Q ss_pred             cchhhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHH
Q 008674            2 LGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQ   80 (557)
Q Consensus         2 LGKvQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq   80 (557)
                      .|.+|.+|-..-+.|=..|-..+-.|=+.+|+ ++..+---.+.-..||--|++.+++++   +.|+...+....+ .|+
T Consensus        98 ~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~k~r~~---kAk~~~~~~~~e~-elr  173 (229)
T cd07594          98 VGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISKERKLLENKRLDLDACKTRVK---KAKSAEAIEQAEQ-DLR  173 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCccchhhhHH-HHH
Confidence            58889999989999999999999999888887 898888888999999999999986652   3333333333444 999


Q ss_pred             HHHHHHHHhHhhhhhhhccccc---cchhhHHHHHHHHHHHHHHhHHhhccchhhhh
Q 008674           81 AANDEYEEEARLCVFRLKSLKQ---GQYRSLLTQAARHHAAQLNFFRKGFKSLEAVD  134 (557)
Q Consensus        81 ~a~~EY~EeAtLfvFRLKSLKQ---GQ~RSLLTQAARHHAAQL~fFrkgLKsLEavE  134 (557)
                      .|.++|++-+-..+=+++-++.   .|-+.|..=    =.|||+||++....|+.+-
T Consensus       174 ~Ae~kF~~~~E~a~~~M~~i~~~~~~~~~~L~~l----v~AQl~Yh~q~~e~L~~l~  226 (229)
T cd07594         174 VAQSEFDRQAEITKLLLEGISSTHANHLRCLRDF----VEAQMTYYAQCYQYMDDLQ  226 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            9999999766665555555554   344444322    2689999999988888763

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.

>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC)

Probab=96.41  E-value=0.0074  Score=58.82  Aligned_cols=126  Identities=18%  Similarity=0.284  Sum_probs=96.3

Q ss_pred             HHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCcc-chHHHHHHHHHH
Q 008674            8 ELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV-SLQQQLQAANDE   85 (557)
Q Consensus         8 ELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~-s~q~QLq~a~~E   85 (557)
                      ||...-+.-++++-.+|..|-+.+++ +|+-|-|.|++.|--++-||..+..+..  -+|+.|.+-+ -.+++|..++..
T Consensus        74 ei~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~~~--l~k~~k~~~~~ea~~~l~~~R~~  151 (202)
T cd07606          74 EIGSYKEVLRSQVEHMLNDRLAQFADTDLQEVKDARRRFDKASLDYEQARSKFLS--LTKDAKPEILAAAEEDLGTTRSA  151 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccCchHHHHHHHHHHHHHHHH
Confidence            44444555567777889999999986 5999999999999999999998754432  2233343222 233489999999


Q ss_pred             HHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhh
Q 008674           86 YEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDT  135 (557)
Q Consensus        86 Y~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEP  135 (557)
                      |+.-+.=.++.|.-|.--+--.+|.--..-=-||+.||++|..-|..+||
T Consensus       152 F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell~~l~p  201 (202)
T cd07606         152 FETARFDLMNRLHAADARKRVEFLERLSGSMDAHLAFFKSGYELLRQLEP  201 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999889999988876666666666666667899999999999999987

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1

Probab=96.02  E-value=0.015  Score=57.02  Aligned_cols=117  Identities=15%  Similarity=0.248  Sum_probs=91.3

Q ss_pred             hccceeeccCCcHHHHHH-hhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCC-ccchHHHHHHHHHHHHHhHhhhh
Q 008674           17 RSNIFLTITNPSESLLNE-LRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGE-SVSLQQQLQAANDEYEEEARLCV   94 (557)
Q Consensus        17 RshI~~TIT~PSESLLnE-LrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgE-s~s~q~QLq~a~~EY~EeAtLfv   94 (557)
                      -.++-.+|..|-+++++| |+-|-|.|+..|-=.+-|+..+...-   +.+..|.. ---...+|..++-.|++-+-=.|
T Consensus        81 l~~~~~~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~al~K~~---~~~k~k~~e~~Ea~~~l~~~R~~F~~~~ldYV  157 (200)
T cd07639          81 LEATQFSFKQQLQLLVKEDLRGFRDARKEFERGAESLEAALQHNA---ETPRRKAQEVEEAAAALLGARATFRDRALDYA  157 (200)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhhHhhcchhHHHHHHHHh---hccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346778899999999975 89999999999999999998763222   22233442 22223388889999998888889


Q ss_pred             hhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhH
Q 008674           95 FRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH  136 (557)
Q Consensus        95 FRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPH  136 (557)
                      +.|.-+..-+--.+|.--...=-||+.||+.|..-|+.+||-
T Consensus       158 ~~in~iq~kKkfefle~ll~~m~a~~tfF~qG~ell~~l~~y  199 (200)
T cd07639         158 LQINVIEDKKKFDILEFMLQLMEAQASFFQQGHEALSALHQY  199 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            999888777777777776777789999999999999999984

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins

Probab=95.91  E-value=0.033  Score=55.05  Aligned_cols=134  Identities=16%  Similarity=0.189  Sum_probs=104.0

Q ss_pred             HHHHHHHhhhhccceeeccCCcHHHH-HHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCC-CCCCCccchHHHHHHHHH
Q 008674            7 FELQKLVDNYRSNIFLTITNPSESLL-NELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSK-SGKGESVSLQQQLQAAND   84 (557)
Q Consensus         7 fELqKlvD~YRshI~~TIT~PSESLL-nELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk-~~KgEs~s~q~QLq~a~~   84 (557)
                      -||-.+-....+++-.+|..|-+.++ ++|+-|-|.|+..|-=.+-||..+..+-.=-|.| +.+-..=..+ +|..++-
T Consensus        75 ~El~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~al~K~~~l~k~k~~~~~~~Ea~~-~l~~~R~  153 (215)
T cd07601          75 DELSTMHSTLSSQLADTVLHPISQFMESDLAEIMTLKELFKAASNDHDGVLSKYSRLSKKRENTKVKIEVND-EVYACRK  153 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCCchHHHHHHHH-HHHHHHH
Confidence            35666666778888899999999999 5799999999999999999999876554422222 2232011245 9999999


Q ss_pred             HHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchh-hhhhHHHHHH
Q 008674           85 EYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLE-AVDTHVRLVA  141 (557)
Q Consensus        85 EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLE-avEPHVk~va  141 (557)
                      .|+.-|.=+++.|--+..-+--.+|.--..-=-||+.||+.|.--|. .+||-++-|.
T Consensus       154 ~F~~~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell~~~~~pf~~~v~  211 (215)
T cd07601         154 KQHQTAMNYYCALNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEEFLSDIN  211 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998886666666666555666689999999999996 9999887653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]

Probab=95.85  E-value=0.031  Score=58.70  Aligned_cols=120  Identities=25%  Similarity=0.368  Sum_probs=90.1

Q ss_pred             CcchhhHHHHHHHhhhhccceeeccCCcHHH-HHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHH
Q 008674            1 MLGEVQFELQKLVDNYRSNIFLTITNPSESL-LNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQL   79 (557)
Q Consensus         1 mLGKvQfELqKlvD~YRshI~~TIT~PSESL-LnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QL   79 (557)
                      |+||+-.|+-.+-|+.-.++-++..-|=+-| |+||..+.--.......|-+|+|...   .-|+-|        .+ .|
T Consensus       111 ~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRldyD~kkk---k~~K~~--------dE-el  178 (366)
T KOG1118|consen  111 DAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRLDYDYKKK---KQGKIK--------DE-EL  178 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHH---HhccCC--------hH-HH
Confidence            4677777887788888888888888888989 99999888877888889999999763   223333        44 78


Q ss_pred             HHHHHHHHH---hHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhH
Q 008674           80 QAANDEYEE---EARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH  136 (557)
Q Consensus        80 q~a~~EY~E---eAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPH  136 (557)
                      +.|.+.|+|   +|---.|-|+.+.=-|.    .|-++---|||+|||+.+.||+.|+--
T Consensus       179 rqA~eKfEESkE~aE~sM~nlle~d~eqv----sqL~~Li~aqLdfhrqs~~iL~~l~~~  234 (366)
T KOG1118|consen  179 RQALEKFEESKELAEDSMFNLLENDVEQV----SQLSALIQAQLDFHRQSTQILQELQMK  234 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888777775   45555677777765553    344555568999999999999988743

>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2

Probab=95.46  E-value=0.036  Score=55.16  Aligned_cols=118  Identities=20%  Similarity=0.352  Sum_probs=92.3

Q ss_pred             cchhhHHHHHHHhhhhccceeeccCCcHHHH-HHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHH
Q 008674            2 LGEVQFELQKLVDNYRSNIFLTITNPSESLL-NELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQ   80 (557)
Q Consensus         2 LGKvQfELqKlvD~YRshI~~TIT~PSESLL-nELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq   80 (557)
                      .|.+|.+|-..-+.|=..|-..+-.|=+.+| +++..+---.+.-.-||=-|++-++++        +|   ...+ +|+
T Consensus        93 ~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~--------~k---~~ee-elr  160 (223)
T cd07614          93 AGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKDLKEIQHHLKKLEGRRLDFDYKKKRQ--------GK---IPDE-ELR  160 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CC---CchH-HHH
Confidence            5888999999999999999999999999998 999999999999999999999865332        22   1135 999


Q ss_pred             HHHHHHHHhHhhhhhhhcccccc---chhhHHHHHHHHHHHHHHhHHhhccchhhhhh
Q 008674           81 AANDEYEEEARLCVFRLKSLKQG---QYRSLLTQAARHHAAQLNFFRKGFKSLEAVDT  135 (557)
Q Consensus        81 ~a~~EY~EeAtLfvFRLKSLKQG---Q~RSLLTQAARHHAAQL~fFrkgLKsLEavEP  135 (557)
                      .|.++|+|=.-.++=++..+...   |-+.|..    ==.|||+||++....|+.|=.
T Consensus       161 ~a~ekFees~E~a~~~M~~il~~e~e~~~~L~~----lveAQl~Yh~qa~eiL~~l~~  214 (223)
T cd07614         161 QAMEKFEESKEVAETSMHNLLETDIEQVSQLSA----LVDAQLDYHRQAVQILDELAE  214 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            99999998777777777776665   3333321    125899999999999887743

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated

>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3

Probab=95.01  E-value=0.073  Score=53.07  Aligned_cols=121  Identities=19%  Similarity=0.303  Sum_probs=94.5

Q ss_pred             cchhhHHHHHHHhhhhccceeeccCCcHHH-HHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHH
Q 008674            2 LGEVQFELQKLVDNYRSNIFLTITNPSESL-LNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQ   80 (557)
Q Consensus         2 LGKvQfELqKlvD~YRshI~~TIT~PSESL-LnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq   80 (557)
                      .|.+|.+|-..-+.|=..|-..+..|=+.+ .+++.++---++.-.-||=-|++-.+++        +|.   ..+ .++
T Consensus        93 ~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~K~r~--------~k~---~~e-E~~  160 (223)
T cd07615          93 VGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDLKEIGHHLKKLEGRRLDFDYKKKRQ--------GKI---PDE-EIR  160 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCC---cHH-HHH
Confidence            588888888888888888888888887766 5888888888899999999999865332        221   245 999


Q ss_pred             HHHHHHHHhHhhhhhhhcccccc---chhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHH
Q 008674           81 AANDEYEEEARLCVFRLKSLKQG---QYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVR  138 (557)
Q Consensus        81 ~a~~EY~EeAtLfvFRLKSLKQG---Q~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk  138 (557)
                      +|.++|+|=.-.++=+.+.++..   |-+.|.    .==.|||.|+++.+..|+.|-+-+.
T Consensus       161 ~A~~kfees~E~a~~~M~n~le~e~e~~~~L~----~lv~AQl~Yh~~a~eiL~~l~~~l~  217 (223)
T cd07615         161 QAVEKFEESKELAERSMFNFLENDVEQVSQLS----VLIEAALDYHRQSTEILEDLQSKLQ  217 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888888888888776   333322    2225899999999999999988664

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e

>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A

Probab=94.97  E-value=0.1  Score=51.81  Aligned_cols=122  Identities=23%  Similarity=0.397  Sum_probs=90.7

Q ss_pred             cchhhHHHHHHHhhhhccceeeccCCcHHH-HHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHH
Q 008674            2 LGEVQFELQKLVDNYRSNIFLTITNPSESL-LNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQ   80 (557)
Q Consensus         2 LGKvQfELqKlvD~YRshI~~TIT~PSESL-LnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq   80 (557)
                      +|.+|-+|-..-+.|=..|-..+-.|=+.+ .+++..+-.-++.-.-+|=-|++.++.+        +|+   ..+ +|+
T Consensus        93 ~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLdyD~~k~k~--------~k~---~ee-El~  160 (223)
T cd07592          93 VGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHHRKKLEGRRLDYDYKKRKQ--------GKG---PDE-ELK  160 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccC---chH-HHH
Confidence            578888888888888888888888888776 5889999999999999999999876322        233   235 899


Q ss_pred             HHHHHHHHhHhhhhhhhcccccc--chhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHH
Q 008674           81 AANDEYEEEARLCVFRLKSLKQG--QYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVR  138 (557)
Q Consensus        81 ~a~~EY~EeAtLfvFRLKSLKQG--Q~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk  138 (557)
                      .|.++|++=.-.++=+++.+...  -+-+.|+.   ==.|||.||+++.+.|+.|=+.+.
T Consensus       161 ~Ae~kfe~s~E~a~~~M~~il~~e~e~~~~L~~---lveAQl~Yh~~~~e~L~~l~~~L~  217 (223)
T cd07592         161 QAEEKFEESKELAENSMFNLLENDVEQVSQLSA---LVEAQLDYHRQSAEILEELQSKLQ  217 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999987666666666655553  22122221   225899999999999999877654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra

>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2

Probab=94.80  E-value=0.12  Score=51.24  Aligned_cols=117  Identities=14%  Similarity=0.230  Sum_probs=89.6

Q ss_pred             ccceeeccCCcHHHHHH-hhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHHHHHHHHHhHhhhhhh
Q 008674           18 SNIFLTITNPSESLLNE-LRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFR   96 (557)
Q Consensus        18 shI~~TIT~PSESLLnE-LrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq~a~~EY~EeAtLfvFR   96 (557)
                      +++-.+|..|-+...+| |+-|-|-|++.|--.+-|+.++..+-.=-+.| .+.|-.-...+|.+++-.|.+.|-=.||.
T Consensus        88 ~~~~~~l~~pL~~F~kedl~~~Ke~KK~FdK~se~~~~Al~K~~~ls~kk-k~~e~~EA~~~l~~~r~~F~~~sLdYv~q  166 (207)
T cd07635          88 LNVTETLIKPLERFRKEQLGAVKEEKKKFDKETEKNYSLLEKHLNLSAKK-KEPQLQEADVQVEQNRQHFYELSLEYVCK  166 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777888898888865 89999999999999999999876533221111 12244444559999999999999999999


Q ss_pred             hccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhh
Q 008674           97 LKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDT  135 (557)
Q Consensus        97 LKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEP  135 (557)
                      |--|..-+--..|.--..-=-||+.||++|---|+.++|
T Consensus       167 in~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~~  205 (207)
T cd07635         167 LQEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDFNH  205 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence            988765555555554445555899999999999998887

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote

>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins

Probab=93.94  E-value=0.15  Score=50.46  Aligned_cols=117  Identities=14%  Similarity=0.213  Sum_probs=91.0

Q ss_pred             ccceeeccCCcHHHHHH-hhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCC-CccchHHHHHHHHHHHHHhHhhhhh
Q 008674           18 SNIFLTITNPSESLLNE-LRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKG-ESVSLQQQLQAANDEYEEEARLCVF   95 (557)
Q Consensus        18 shI~~TIT~PSESLLnE-LrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~Kg-Es~s~q~QLq~a~~EY~EeAtLfvF   95 (557)
                      .++-.+|..|-+...+| |+.|-|-|+..|--.+-|+..+..+..=  +|+.|. |-.-.+.+|..++-.|+..+-=.||
T Consensus        88 ~q~~~~l~~pL~~F~k~dl~~~ke~kk~FdK~se~~~~al~k~~~l--sk~kk~~~~~ea~~~l~~~r~~f~~~~l~Yv~  165 (207)
T cd07602          88 ENAEEQLIEPLEKFRKEQIGGAKEEKKKFDKETEKFCSSLEKHLNL--STKKKENQLQEADAQLDMERRNFHQASLEYVF  165 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445678888888885 9999999999999999999987654422  233223 2233445899999999999999999


Q ss_pred             hhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhH
Q 008674           96 RLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH  136 (557)
Q Consensus        96 RLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPH  136 (557)
                      .|.-+..-+--..|.--...=-||+.||++|-.-|..+||.
T Consensus       166 ~l~~vq~rKkfefle~ll~~m~a~~tff~qG~el~~d~~py  206 (207)
T cd07602         166 KLQEVQERKKFEFVETLLSFMYGWLTFYHQGHEVAKDFKPY  206 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence            99888666666666666667779999999999999999985

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1

>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1

Probab=93.71  E-value=0.43  Score=47.82  Aligned_cols=117  Identities=15%  Similarity=0.185  Sum_probs=87.7

Q ss_pred             eeccCCcHHHHHH-hhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCcc---chHHHHHHHHHHHHHhHhhhhhhh
Q 008674           22 LTITNPSESLLNE-LRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV---SLQQQLQAANDEYEEEARLCVFRL   97 (557)
Q Consensus        22 ~TIT~PSESLLnE-LrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~---s~q~QLq~a~~EY~EeAtLfvFRL   97 (557)
                      .+|..|-+..++| |+-|-|-|++.|-=.+-||..+..+-.  =+|+.+.|-.   ... ++..++.-|++-|-=+||.|
T Consensus        90 ~sl~~pL~~F~kedL~~~Ke~KK~FdK~Se~~d~Al~K~a~--lsk~K~~E~~~eea~~-~v~~tR~~F~~~aLdYv~qL  166 (215)
T cd07631          90 DAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSR--LSKRRENEKVKYEVTE-DVYTSRKKQHQTMMHYFCAL  166 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc--CCCCCCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            3455566666654 788899999999999999998754443  4566666654   345 88889999998888899999


Q ss_pred             ccccccchhhHHHHHHHHHHHHHHhHHhhcc-chhhhhhHHHHHH
Q 008674           98 KSLKQGQYRSLLTQAARHHAAQLNFFRKGFK-SLEAVDTHVRLVA  141 (557)
Q Consensus        98 KSLKQGQ~RSLLTQAARHHAAQL~fFrkgLK-sLEavEPHVk~va  141 (557)
                      -.|..-+--.+|.--..-==||+.||++|-. .+..+||-++-|+
T Consensus       167 n~lQ~rKKfefLe~lLs~m~A~~tFFhqG~e~L~~dl~~f~~~l~  211 (215)
T cd07631         167 NTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLTNIG  211 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            8886666555665555555689999999999 6669999887664

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo

>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1

Probab=93.38  E-value=0.51  Score=47.42  Aligned_cols=122  Identities=13%  Similarity=0.269  Sum_probs=73.8

Q ss_pred             chhhHHHHHHHhhhhccceeeccCCcHHHH-HHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCcc--chHHHH
Q 008674            3 GEVQFELQKLVDNYRSNIFLTITNPSESLL-NELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV--SLQQQL   79 (557)
Q Consensus         3 GKvQfELqKlvD~YRshI~~TIT~PSESLL-nELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~--s~q~QL   79 (557)
                      |.+|.+|-..-+.|=.++-..+..|=..+| ++|..+---.+.-+.||=-|++.+++++      +.|.+.+  ..++.|
T Consensus        99 g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~------kAk~~~~~~~~e~el  172 (229)
T cd07616          99 GETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDLDAAKTRLK------KAKVAEARAAAEQEL  172 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCcchhhcchHHHH
Confidence            444554444444333322224445555555 4555555556677788888988876552      2223322  235599


Q ss_pred             HHHHHHHHHhHhhhhhhhcccc--ccchhhHHHHHHHHHHHHHHhHHhhccchhhh
Q 008674           80 QAANDEYEEEARLCVFRLKSLK--QGQYRSLLTQAARHHAAQLNFFRKGFKSLEAV  133 (557)
Q Consensus        80 q~a~~EY~EeAtLfvFRLKSLK--QGQ~RSLLTQAARHHAAQL~fFrkgLKsLEav  133 (557)
                      +.|.+||++-+-.++=+++.+.  ...+-+-|..   ==.|||.+|++.-..|+.|
T Consensus       173 r~ae~efees~E~a~~~m~~i~~~~~e~~~~L~~---lv~AQl~Yh~~~~e~L~~L  225 (229)
T cd07616         173 RITQSEFDRQAEITRLLLEGISSTHAHHLRCLND---FVEAQMTYYAQCYQYMLDL  225 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            9999999988877777777777  3322222222   2268999999988888765

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact

>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins

Probab=93.11  E-value=0.48  Score=47.69  Aligned_cols=123  Identities=16%  Similarity=0.175  Sum_probs=83.1

Q ss_pred             chhhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHH
Q 008674            3 GEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQA   81 (557)
Q Consensus         3 GKvQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq~   81 (557)
                      |.+|.++-..-+..=..|....-.|=+.+|+ ++..+-.-++.-..||=-|+++++.++.  -.+..|.|.+ .. +++.
T Consensus       113 g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D~~K~~~~k--a~~~~k~~~~-~~-e~E~  188 (242)
T cd07600         113 SDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRLQLDTARAELKS--AEPAEKQEAA-RV-EVET  188 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccch-HH-HHHH
Confidence            4455555554445555666777778888888 9999999999999999999999876632  1122343442 22 5666


Q ss_pred             HHHHH---HHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhh
Q 008674           82 ANDEY---EEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVD  134 (557)
Q Consensus        82 a~~EY---~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavE  134 (557)
                      |.++|   .|+|..+.+.+  |+...+-+   +=.-=..|||.+|+++.+.|+.+-
T Consensus       189 aEdef~~a~E~a~~~M~~i--l~~~e~i~---~L~~fv~AQl~Yh~~~~e~L~~l~  239 (242)
T cd07600         189 AEDEFVSATEEAVELMKEV--LDNPEPLQ---LLKELVKAQLAYHKTAAELLEELL  239 (242)
T ss_pred             HHHHHHHhHHHHHHHHHHH--HhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66666   56777666666  44443333   334456789999999999998764

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins

Probab=92.99  E-value=0.56  Score=47.04  Aligned_cols=133  Identities=17%  Similarity=0.183  Sum_probs=94.8

Q ss_pred             CcchhhHHHHHHHhhhhccceeeccCCcHHHH-HHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCC-----CCCCCCccc
Q 008674            1 MLGEVQFELQKLVDNYRSNIFLTITNPSESLL-NELRTVEDMKRQCDEKRNVCEYVMAQQREKGKS-----KSGKGESVS   74 (557)
Q Consensus         1 mLGKvQfELqKlvD~YRshI~~TIT~PSESLL-nELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrs-----k~~KgEs~s   74 (557)
                      +.|.+|.+|-..-..|=..|-..+-.|=..+| +||.++---++.-.-+|--|++.+++++.=-|+     -.+|.+.  
T Consensus        85 ~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~ka~k~~~~~~~~~K~~~--  162 (244)
T cd07595          85 LCGEAQNTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNAAHKSSGGQGAAAKVDA--  162 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhccccccccccccccch--
Confidence            35888999988889999999899999988888 588888888999999999999998776421111     1244443  


Q ss_pred             hHHHHHHHHHHHHHhHhhhhhhhccccc---cchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHHH
Q 008674           75 LQQQLQAANDEYEEEARLCVFRLKSLKQ---GQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRL  139 (557)
Q Consensus        75 ~q~QLq~a~~EY~EeAtLfvFRLKSLKQ---GQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk~  139 (557)
                      .+.++..|.++|.+---.++=++..+..   -+.+.|.    .=-.|||.|||+++..|+.+=|-+.-
T Consensus       163 l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E~e~~~~l~----~lv~aQl~YH~~a~e~L~~l~~~l~~  226 (244)
T cd07595         163 LKDEYEEAELKLEQCRDALATDMYEFLAKEAEIASYLI----DLIEAQREYHRTALSVLEAVLPELQE  226 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2336788888777654444444444433   2333332    34579999999999999998876653

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and

>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2

Probab=91.47  E-value=0.57  Score=46.12  Aligned_cols=127  Identities=17%  Similarity=0.243  Sum_probs=92.8

Q ss_pred             HHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHHHHHHH
Q 008674            8 ELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAANDEY   86 (557)
Q Consensus         8 ELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq~a~~EY   86 (557)
                      ||-..-+..++++-.+|..|-+..++ +|+-|-|-|+..|-=.+-|+..+..+-.=  +|+--.|---..++|.+++--|
T Consensus        72 ei~~~~~~L~~q~~~~l~~~L~~F~k~dl~~vke~kk~FdK~s~~~~~aL~K~~~~--~k~k~~e~eEa~~~l~~~r~~F  149 (200)
T cd07638          72 EMINYHTILFDQAQRSIKAQLQTFVKEDLRKFKDAKKQFDKVSEEKENALVKNAQV--QRNKQHEVEEATNILTATRKCF  149 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHhccC--CcCchHHHHHHHHHHHHHHHHH
Confidence            44455556677888889999888876 58999999999998888777765322221  2211112222224899999999


Q ss_pred             HHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhH
Q 008674           87 EEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTH  136 (557)
Q Consensus        87 ~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPH  136 (557)
                      +.-|-=.|+.|.-|..-+--.+|.--...=-||+.||++|---|..+||+
T Consensus       150 ~~~~ldYv~~ln~vq~kKkfe~le~ll~~m~a~~tff~qG~el~~d~~py  199 (200)
T cd07638         150 RHIALDYVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQGYDLFSELGPY  199 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccc
Confidence            99998899999887666655566555666678999999999999999986

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=90.64  E-value=1.1  Score=51.97  Aligned_cols=138  Identities=22%  Similarity=0.305  Sum_probs=103.8

Q ss_pred             hhhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHHH
Q 008674            4 EVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQAA   82 (557)
Q Consensus         4 KvQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq~a   82 (557)
                      ++=-||-++-+.+++++-++|--|-..+.| +|+-|-+.|++-|-+.+-|+..++.+-+=-+.|..|.=.-..+ -|.++
T Consensus        87 ~~~~e~~~~~~~L~~q~~~~~~~~l~~f~k~dl~~v~~~kk~f~ka~~~~d~a~~k~~~l~k~~~~~~~~e~~~-~l~~~  165 (785)
T KOG0521|consen   87 KVLRELGTYHTELRSQLAHTLSLPLSQFVKGDLHEVKELKKLFEKASEEYDLALVKYSRLPKKRRSKVKTEVEE-ELAAA  165 (785)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHhhHHHHHHHhhhhhhccccchhHHHHH-HHHHH
Confidence            344578888889999999999999999887 5999999999999999999998875544333332333222344 67888


Q ss_pred             HHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHHHHHh
Q 008674           83 NDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAE  142 (557)
Q Consensus        83 ~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk~vaE  142 (557)
                      +-.|+--+-=.+.-|--+..-+--.+|.-.-.===||.+||++|.+-++-+||-.+-|+.
T Consensus       166 r~~f~~~~~~y~~~ln~~q~kk~~~~le~~l~~~~aq~~fF~~g~~l~~~m~p~~~~i~~  225 (785)
T KOG0521|consen  166 RRKFQLTALDYVLALNVLQAKKQFEILETLLGFMHAQINFFKQGEDLLSQMDPYIKKVAT  225 (785)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchHHHHHHHHHHHhccchhcccHhHHhhhhHHHHHHHH
Confidence            888877666666666666666666666666666668999999999999999998876654

>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1

Probab=90.36  E-value=1.3  Score=44.56  Aligned_cols=118  Identities=20%  Similarity=0.305  Sum_probs=88.9

Q ss_pred             cchhhHHHHHHHhhhhccceeeccCCcHH-HHHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHH
Q 008674            2 LGEVQFELQKLVDNYRSNIFLTITNPSES-LLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQ   80 (557)
Q Consensus         2 LGKvQfELqKlvD~YRshI~~TIT~PSES-LLnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq   80 (557)
                      .|.++.+|-..-+.|-..|-..+-.|=+. +.++|.++---.+.-.-||=-|++-++++        +|.   ..+ +|+
T Consensus        93 ~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k~RKkLe~rRLd~D~~K~r~--------~k~---~ee-Elr  160 (223)
T cd07613          93 VGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQ--------GKI---PDE-ELR  160 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhC--------CCC---cHH-HHH
Confidence            47788888888888888888888888888 55899999999999999999999854333        111   245 999


Q ss_pred             HHHHHHHHhHhhhhhhhcccccc-----chhhHHHHHHHHHHHHHHhHHhhccchhhhhhHH
Q 008674           81 AANDEYEEEARLCVFRLKSLKQG-----QYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHV  137 (557)
Q Consensus        81 ~a~~EY~EeAtLfvFRLKSLKQG-----Q~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHV  137 (557)
                      .|.++|+|=+-.+.=+.+.|...     +...-|      =.|||.||++....|+.|-+-+
T Consensus       161 ~A~~kFees~E~a~~~M~n~l~~e~e~~~~L~~f------veAQl~Yh~qa~eiL~~l~~~l  216 (223)
T cd07613         161 QALEKFDESKEIAESSMFNLLEMDIEQVSQLSAL------VQAQLEYHKQATQILQQVTVKL  216 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998777777555544443     222222      2489999999999999887654

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i

>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase

Probab=88.70  E-value=1.2  Score=44.18  Aligned_cols=112  Identities=13%  Similarity=0.245  Sum_probs=84.8

Q ss_pred             eeccCCcHHHHHH-hhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCC-CccchHHHHHHHHHHHHHhHhhhhhhhcc
Q 008674           22 LTITNPSESLLNE-LRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKG-ESVSLQQQLQAANDEYEEEARLCVFRLKS   99 (557)
Q Consensus        22 ~TIT~PSESLLnE-LrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~Kg-Es~s~q~QLq~a~~EY~EeAtLfvFRLKS   99 (557)
                      .+|..|-+.+++| |+-|-|-|++.|.-.+-|+.++...-.  =++..|. |-.-..+||.+.+-.|.+.|-=.||.|--
T Consensus        92 ~~l~~~L~~F~kedi~~~Ke~kK~FdK~se~~~~al~k~~~--ls~k~K~~~~eEA~~~L~~~r~~F~~~sLdYV~qi~~  169 (207)
T cd07636          92 EVLITPLEKFRKEQIGAAKEAKKKYDKETEKYCAVLEKHLN--LSSKKKESQLHEADSQVDLVRQHFYEVSLEYVFKVQE  169 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHHHhc--CcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556777777764 899999999999999999998754433  2333444 33345569999999999999999999887


Q ss_pred             ccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhh
Q 008674          100 LKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDT  135 (557)
Q Consensus       100 LKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEP  135 (557)
                      +..-+--..|.--.+-=-||+-||+.|---|+.++|
T Consensus       170 vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~~  205 (207)
T cd07636         170 VQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFSD  205 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence            766555555555555566899999999999988876

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o

>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3

Probab=87.31  E-value=2.9  Score=41.86  Aligned_cols=132  Identities=16%  Similarity=0.169  Sum_probs=83.2

Q ss_pred             HHHHHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCC--c--cchHHHHHHHHH
Q 008674            9 LQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGE--S--VSLQQQLQAAND   84 (557)
Q Consensus         9 LqKlvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgE--s--~s~q~QLq~a~~   84 (557)
                      |+.++.-+=..|-.||..|-..+++-...|.++-..=+.|-.=|+.+++.++ |=..|-.|+.  .  .-.+++|+.|..
T Consensus        81 l~~~~~~~~~~~~~~vl~Pl~~~~s~f~~I~~~I~KR~~Kl~DYD~~r~~~~-kl~~K~~k~~~~~KL~kae~el~~Ak~  159 (225)
T cd07590          81 LDKTVQELVNLIQKTFIEPLKRLRSVFPSVNAAIKRREQSLQEYERLQAKVE-KLAEKEKTGPNLAKLEQAEKALAAARA  159 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHhCccCChhHHHHHHHHHHHHHHHH
Confidence            3333333333444677888889999999999998888888888998887543 2222322221  1  113348999999


Q ss_pred             HHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHHHHH
Q 008674           85 EYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVA  141 (557)
Q Consensus        85 EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk~va  141 (557)
                      +|++--....==|-.|=+++.-=+-.-=.-=-.+|+.||..+=|.|..|.+.+..-+
T Consensus       160 ~ye~~N~~L~~ELP~l~~~r~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~d~~~  216 (225)
T cd07590         160 DFEKQNIKLLEELPKFYNGRTDYFQPCFEALIKSQVLYYSQSTKIFTQLAPNLDNPI  216 (225)
T ss_pred             HHHHHHHHHHHHhHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            998766655544444444432211111111235799999999999999887665433

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2

Probab=85.01  E-value=2.6  Score=42.51  Aligned_cols=111  Identities=17%  Similarity=0.185  Sum_probs=79.3

Q ss_pred             cceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCC-CCCCCccchHHHHHHHHHHHHHhHhhhhhh
Q 008674           19 NIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSK-SGKGESVSLQQQLQAANDEYEEEARLCVFR   96 (557)
Q Consensus        19 hI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk-~~KgEs~s~q~QLq~a~~EY~EeAtLfvFR   96 (557)
                      ++-.+|..|=+...+ +|+.|-|.|++.|-=++-|+..+..+-.=-|.| +-+-|.-... ||..++.-|.+-|.=+||-
T Consensus        87 qaq~sl~~pL~~F~KeDl~~vKe~KK~FdK~Se~~d~AL~KnaqlskkK~~E~~eae~~~-~l~~sRr~F~~~ALdYV~q  165 (215)
T cd07632          87 QLADTMVLPIIQFREKDLTEVSTLKDLFGIASNEHDLSMAKYSRLPKKRENEKVKAEVAK-EVAYSRRKQHLSSLQYYCA  165 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCcCCchHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            444455788888776 599999999999999999999887665544444 2233443445 7999999999999999998


Q ss_pred             hccccccchhhHHHHHHHHHHHHHHhHHhhccch
Q 008674           97 LKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSL  130 (557)
Q Consensus        97 LKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsL  130 (557)
                      |-.|..-+--.+|.---.-==||..||++|--.+
T Consensus       166 iN~lQ~RKKfeiLE~mLsym~Aq~TFFhQGyeL~  199 (215)
T cd07632         166 LNALQYRKRVAMLEPMLGYTHGQINFFKKGAELF  199 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877554444444333333447999999996443

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac

>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2

Probab=83.91  E-value=7.2  Score=39.31  Aligned_cols=115  Identities=17%  Similarity=0.325  Sum_probs=80.6

Q ss_pred             cchhhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHH
Q 008674            2 LGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQ   80 (557)
Q Consensus         2 LGKvQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq   80 (557)
                      .|.++.+|-..-+.|=..|-...-.|=..+|+ +|+.+---.+.-..||=-|++-+++++.        .    .+ +|+
T Consensus        98 ~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~~k--------a----e~-elr  164 (220)
T cd07617          98 VGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARLKK--------A----EH-ELR  164 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------c----HH-HHH
Confidence            36677777777777777777777777776666 7777777777788888899998765522        2    34 899


Q ss_pred             HHHHHHHHhHhhhhhhhcccccc---chhhHHHHHHHHHHHHHHhHHhhccchhhh
Q 008674           81 AANDEYEEEARLCVFRLKSLKQG---QYRSLLTQAARHHAAQLNFFRKGFKSLEAV  133 (557)
Q Consensus        81 ~a~~EY~EeAtLfvFRLKSLKQG---Q~RSLLTQAARHHAAQL~fFrkgLKsLEav  133 (557)
                      .|.++|+|-+-++.=.++.++..   |-+.|    +-==.|||.||++.-..|+.|
T Consensus       165 ~A~~kf~~~~E~a~~~M~~il~~~~e~l~~L----~~lv~AQl~Yh~q~~e~L~~l  216 (220)
T cd07617         165 VAQTEFDRQAEVTRLLLEGISSTHVNHLRCL----HEFVEAQATYYAQCYRHMLDL  216 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            99999998766554445555554   22222    222368999999998888765

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	557
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2q12_A	265	DIP13 alpha, DCC-interacting protein 13 alpha; APP	1e-07
2fic_A	251	Bridging integrator 1; BAR domain, homodimer, coil	4e-05
1uru_A	244	Amphiphysin; endocytosis, coiled-coil, membrane cu	1e-04
4avm_A	237	Bridging integrator 2; protein binding, plasma mem	2e-04
2z0v_A	240	SH3-containing GRB2-like protein 3; helix bundle,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.2 bits (163), Expect = 1e-11
 Identities = 62/484 (12%), Positives = 130/484 (26%), Gaps = 161/484 (33%)

Query: 2   LGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQRE 61
            GE Q++ + ++  +            ++   + + V+DM +    K  +   +M++   
Sbjct: 11  TGEHQYQYKDILSVFEDAFV-------DNF--DCKDVQDMPKSILSKEEIDHIIMSKDAV 61

Query: 62  KGKSK-----SGKGESV-------SLQQ-------QLQAAN-------DEYEEE-ARLC- 93
            G  +       K E +        L+         ++            Y E+  RL  
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 94  ---------VFR----------LKSLKQGQY----------RSLLT-QAARHHAAQLNFF 123
                    V R          L  L+  +           ++ +       +  Q    
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 124 RKGF-KSLEAVDTHVRLVAERQHIDYQFSGLEDNDGEDGEDSYYAN---EAGELS--FDY 177
            K F  +L+  ++   ++   Q + YQ          D   +          EL      
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDP-NWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 178 RDNKQGL----DVVS---------------TSRKSMEVDDVDVSFPQASTVENAEVNLDK 218
           +  +  L    +V +               T+R     D +  +     ++++  + L  
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 219 NPG-EYQAS----------HRERRGSSFSAPIFPERKIDPAERI---RQV---QQSSARQ 261
           +                        +     I  E   D        + V   + ++  +
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 262 PSTYVLPT-------------PIDAKVPI-----------------------SSSVAPRT 285
            S  VL               P  A +P                          S+  + 
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK- 419

Query: 286 RPSNPSGRTYNLSHSSPLEQKKEDRDYGDAH--LSEHSGLKSQSLLKESDSNNASTRPPP 343
               P   T ++  S  LE K +  +    H  + +H      ++ K  DS++    PP 
Sbjct: 420 ---QPKESTISI-PSIYLELKVKLENEYALHRSIVDH-----YNIPKTFDSDDLI--PPY 468

Query: 344 LRDG 347
           L D 
Sbjct: 469 L-DQ 471

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 1e-04
 Identities = 52/406 (12%), Positives = 114/406 (28%), Gaps = 121/406 (29%)

Query: 169 EAGELSFDYRDNKQGLDVVSTSRKSMEVDDVDVS----FPQASTVENAEV-NLDKNPGEY 223
           E GE  + Y+      D++S    +  VD+ D       P+ S +   E+ ++  +    
Sbjct: 10  ETGEHQYQYK------DILSVFEDAF-VDNFDCKDVQDMPK-SILSKEEIDHIIMSKDAV 61

Query: 224 QASHR-----ERRGSSFSAPIFPERKIDP-----AERIRQVQQSSARQPSTYVLPTPIDA 273
             + R       +        F E  +          I+  Q+  +     Y+       
Sbjct: 62  SGTLRLFWTLLSKQEE-MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI------- 113

Query: 274 KVPISSSVAPRTRPSNPSGRTYNLSHSSPLEQKK----EDRD------YGDAHLSEHSGL 323
                     R    N     YN+S   P  + +    E R        G       SG 
Sbjct: 114 ------EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL----GSG- 162

Query: 324 KSQSLLKESDSNNASTRPPPLRDGLALPQLD------TLNSSDTKK--IKTQASSGPLTS 375
           K+  +  +                    ++D       L + ++ +  ++          
Sbjct: 163 KT-WVALDV-----------CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 376 KSSSSKPALSSSGPITYTELPQIVSGLLSHAPVPQTKTSPRVSPTASPPL-----VSSPR 430
            + +S+   SS+  +    +   +  LL   P                 L     V + +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-------------LLVLLNVQNAK 257

Query: 431 ISELHELPRPPNAFATKPAKSSGLVGHSAPLMFRNQEHTSTNKNPSMASYTASPLPIPPL 490
                       AF     K   L+               T +   +  + ++       
Sbjct: 258 AWN---------AFNLS-CKI--LL---------------TTRFKQVTDFLSAATTTHIS 290

Query: 491 IVSRSFSIPSSSQKAMALHVSKFLESPKVVEKSEGVSSPPLTPISL 536
           +   S ++  +  +  +L + K+L+        E +++ P   +S+
Sbjct: 291 LDHHSMTL--TPDEVKSL-LLKYLDCRPQDLPREVLTTNPRR-LSI 332

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 42/298 (14%), Positives = 83/298 (27%), Gaps = 82/298 (27%)

Query: 1   MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQC-------DEKRNVCE 53
           ++ E   +     DN++      +T   ES LN L   E   R+            ++  
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--RKMFDRLSVFPPSAHIPT 389

Query: 54  YVMAQQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAA 113
            ++                      +     + +    +      SL + Q +       
Sbjct: 390 ILL--------------------SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI--- 426

Query: 114 RHHAAQLNFFRKGFKSLEAVDTHVRLVAERQHIDYQFSGLEDNDGE--DGEDSYYAN--- 168
              +  L       K       H  +V       Y      D+D       D Y+ +   
Sbjct: 427 SIPSIYLELKV---KLENEYALHRSIVDH-----YNIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 169 ------EAGE-------LSFDYR--DNKQGLDVVSTSRKSMEVDDV-DVSF--------- 203
                 E  E       +  D+R  + K   D  + +     ++ +  + F         
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538

Query: 204 PQASTVENAEVNLDKNPGE--YQASHRERRGSSFSAP---IFPERKIDPAERIRQVQQ 256
           P+   + NA ++      E    + + +    +  A    IF E     A   +QVQ+
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE-----AH--KQVQR 589

>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A Length = 265

 Score = 52.2 bits (124), Expect = 1e-07
 Identities = 18/130 (13%), Positives = 45/130 (34%), Gaps = 1/130 (0%)

Query: 2   LGEVQFELQKLVDNYRSNIFLTITNPSESLLNE-LRTVEDMKRQCDEKRNVCEYVMAQQR 60
             +V  EL        + +   +  P        L+ +  +K       N  +  + +  
Sbjct: 89  FSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYS 148

Query: 61  EKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQL 120
              K +        + + +  +  +  +        L +L+  +  +LL     +  AQ+
Sbjct: 149 RLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQI 208

Query: 121 NFFRKGFKSL 130
           +FF+ G ++L
Sbjct: 209 SFFKMGSENL 218

>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A Length = 251

 Score = 44.4 bits (104), Expect = 4e-05
 Identities = 19/145 (13%), Positives = 49/145 (33%), Gaps = 5/145 (3%)

Query: 1   MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQR 60
              ++      L  +Y   +        ++ L +   ++    +   K    +Y  A+  
Sbjct: 109 EANKIAENNDLLWMDYHQKLVDQALLTMDTYLGQFPDIKSRIAKRGRKL--VDYDSARHH 166

Query: 61  -EKGKSKSGKGES--VSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHA 117
            E  ++   K E+     +++L  A   +EE        L SL   +    +        
Sbjct: 167 YESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAG 226

Query: 118 AQLNFFRKGFKSLEAVDTHVRLVAE 142
            + NF ++  K  + ++  +  + +
Sbjct: 227 LEENFHKEMSKLNQNLNDVLVGLEK 251

>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1 Length = 244

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 16/133 (12%), Positives = 39/133 (29%), Gaps = 3/133 (2%)

Query: 2   LGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQ-- 59
           L       + L  ++   +   +  P  +   +   ++    + + K    +        
Sbjct: 95  LQAQTGASESLWADFAHKLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQN 154

Query: 60  -REKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAA 118
            +     +    +    ++QL+ A   YE         L +L   +   L+T      A 
Sbjct: 155 LQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFAT 214

Query: 119 QLNFFRKGFKSLE 131
           +  F  +  K   
Sbjct: 215 EQVFHNETAKIYS 227

>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens} Length = 240

 Score = 40.9 bits (95), Expect = 5e-04
 Identities = 21/134 (15%), Positives = 51/134 (38%), Gaps = 14/134 (10%)

Query: 1   MLGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQ 59
            +GE    + ++ D+   N+  T  +P + L + +L+ +    ++ + +R   +Y   + 
Sbjct: 100 EVGESMKLMAEVKDSLDINVKQTFIDPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRV 159

Query: 60  REKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQ 119
            +    +          +Q     +E +E A   +F        Q   L         A 
Sbjct: 160 GKIPDEE---------VRQAVEKFEESKELAERSMFNFLENDVEQVSQLAV----FIEAA 206

Query: 120 LNFFRKGFKSLEAV 133
           L++ R+  + L+ +
Sbjct: 207 LDYHRQSTEILQEL 220

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	557
2q12_A	265	DIP13 alpha, DCC-interacting protein 13 alpha; APP	98.34
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	98.13
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	98.12
1zww_A	256	SH3-containing GRB2-like protein 2; coiled coil, t	97.84
2z0v_A	240	SH3-containing GRB2-like protein 3; helix bundle,	97.81
1uru_A	244	Amphiphysin; endocytosis, coiled-coil, membrane cu	97.07
2fic_A	251	Bridging integrator 1; BAR domain, homodimer, coil	95.76
4avm_A	237	Bridging integrator 2; protein binding, plasma mem	91.41

>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A

Probab=98.34  E-value=1.2e-06  Score=83.04  Aligned_cols=138  Identities=14%  Similarity=0.198  Sum_probs=113.0

Q ss_pred             chhhHHHHHHHhhhhccceeeccCCcHHHH-HHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCcc--chHHHH
Q 008674            3 GEVQFELQKLVDNYRSNIFLTITNPSESLL-NELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV--SLQQQL   79 (557)
Q Consensus         3 GKvQfELqKlvD~YRshI~~TIT~PSESLL-nELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~--s~q~QL   79 (557)
                      |++..||-.+.+....++-.+|..|-+.++ ++|+.|.|.|+..|..|.-|+.+++.|..-.+.|  +.|..  ....+|
T Consensus        90 ~~~l~ei~~~~~~l~~~~~~~~~~PL~~f~~~dlk~~ke~kk~fdk~~~~yd~al~k~~~~~k~k--~~e~~l~Ea~~~l  167 (265)
T 2q12_A           90 SKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKR--ENDKVKYEVTEDV  167 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC--CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--cchhhHHHHHHHH
Confidence            555666666666666778888899999999 6799999999999999999999999877666555  34432  233499


Q ss_pred             HHHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchh-hhhhHHHHHHh
Q 008674           80 QAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLE-AVDTHVRLVAE  142 (557)
Q Consensus        80 q~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLE-avEPHVk~vaE  142 (557)
                      .+++..|+.-+-=+++.|.-|+..+--.+|..--...-||+.||++|.+.+. .+||+++.+..
T Consensus       168 ~~~Rk~f~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~~~~p~~~~l~~  231 (265)
T 2q12_A          168 YTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGT  231 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888999998888766667888888888999999999999994 99999987654

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=98.13  E-value=4.6e-06  Score=83.39  Aligned_cols=136  Identities=21%  Similarity=0.236  Sum_probs=108.6

Q ss_pred             hhhHHHHHHHhhhhccceeeccCCcHHHHHH-hhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccc--hHHHHH
Q 008674            4 EVQFELQKLVDNYRSNIFLTITNPSESLLNE-LRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVS--LQQQLQ   80 (557)
Q Consensus         4 KvQfELqKlvD~YRshI~~TIT~PSESLLnE-LrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s--~q~QLq   80 (557)
                      ++--|+..+.+....++-.+|..|-+.++++ |+.++|+|+++|.-..-|+.+++.|-.-.+.  .+.|...  ..+||.
T Consensus       114 ~~~~ei~~~~~~L~~~~~~~i~~pL~~f~k~di~~~ke~kK~Fek~~~~Yd~~l~Ky~~~~k~--k~~~~~~~e~~~~l~  191 (407)
T 4h8s_A          114 KVVDELNLLHTELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGLASNEHDLSMAKYSRLPKK--KENEKVKTEVGKEVA  191 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCST--TCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CCchHHHHHHHHHHH
Confidence            3445555666666677888899999999975 9999999999999999999999888544333  3333321  123899


Q ss_pred             HHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccch-hhhhhHHHHHH
Q 008674           81 AANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSL-EAVDTHVRLVA  141 (557)
Q Consensus        81 ~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsL-EavEPHVk~va  141 (557)
                      +++..|+.-+.=+++.|..|+..+..-+|..-....-||++||+.|...+ +.+||.++.+.
T Consensus       192 ~~Rk~f~~asldyv~~l~~lq~rk~~e~le~l~~~~~a~~~~f~~~~~~~~~~~~~~~~~l~  253 (407)
T 4h8s_A          192 AARRKQHLSSLQYYCALNALQYRKQMAMMEPMIGFAHGQINFFKKGAEMFSKRMDSFLSSVA  253 (407)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999877777888888888999999999999987 56888876553

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=98.12  E-value=4.9e-06  Score=82.60  Aligned_cols=137  Identities=15%  Similarity=0.208  Sum_probs=108.9

Q ss_pred             chhhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCcc--chHHHH
Q 008674            3 GEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESV--SLQQQL   79 (557)
Q Consensus         3 GKvQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~--s~q~QL   79 (557)
                      |++..||..+.+....++-.+|..|-+.+++ +|+.+.|.|+..|..+.-|+.+++.|..-.+.|  +.|..  -...||
T Consensus        90 ~~~~~ei~~~~~~l~~~~~~~~~~PL~~f~~~di~~~ke~kk~fek~~~~yd~al~k~~~~~k~k--~~e~~~~ea~~~l  167 (385)
T 2q13_A           90 SKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKR--ENDKVKYEVTEDV  167 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSS--CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--chhhHHHHHHHHH
Confidence            5566677666666677777888899999995 599999999999999999999998886654444  34432  222489


Q ss_pred             HHHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccch-hhhhhHHHHHH
Q 008674           80 QAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSL-EAVDTHVRLVA  141 (557)
Q Consensus        80 q~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsL-EavEPHVk~va  141 (557)
                      .+++.+|+..+-=+++.|-.|...+-..+|..-...=.||+.||++|...+ +.++|.++.+.
T Consensus       168 ~~~rk~f~~~~ldy~~~l~~l~~rk~~e~le~l~~~~~a~~~ff~~g~~~~~~~~~~~~~~l~  230 (385)
T 2q13_A          168 YTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIG  230 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998889989988766666777777777778999999999988 58998876554

>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A

Probab=97.84  E-value=3.8e-05  Score=73.33  Aligned_cols=125  Identities=18%  Similarity=0.304  Sum_probs=97.2

Q ss_pred             cchhhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHH
Q 008674            2 LGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQ   80 (557)
Q Consensus         2 LGKvQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq   80 (557)
                      +|.++.+|......+-..|-.++..|=..+|+ ++..+-+.++.-+.||--|+++++.++        |    ..+++|.
T Consensus       117 ~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~~~~k~i~k~rkkl~~~rLdyD~~k~k~~--------k----~~eeEle  184 (256)
T 1zww_A          117 VGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQG--------K----IPDEELR  184 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTT--------T----SCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------c----ccHHHHH
Confidence            58899999999999999999999999999886 999999999999999999999876542        1    1233888


Q ss_pred             HHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHHH
Q 008674           81 AANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRL  139 (557)
Q Consensus        81 ~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk~  139 (557)
                      .|.++|++-....+=.|..|.....-. +-+-.-=-.|||+||++++..|+.|.|-+..
T Consensus       185 ~A~~~fe~~~e~~~~~m~~l~~~e~e~-~~~L~~~v~aQl~y~~~~~e~L~~l~~~l~~  242 (256)
T 1zww_A          185 QALEKFDESKEIAESSMFNLLEMDIEQ-VSQLSALVQAQLEYHKQAVQILQQVTVRLEE  242 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888887766655555555444332221 2333445579999999999999999998764

>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}

Probab=97.81  E-value=2.4e-05  Score=74.17  Aligned_cols=125  Identities=17%  Similarity=0.306  Sum_probs=103.0

Q ss_pred             cchhhHHHHHHHhhhhccceeeccCCcHHHH-HHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHH
Q 008674            2 LGEVQFELQKLVDNYRSNIFLTITNPSESLL-NELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQ   80 (557)
Q Consensus         2 LGKvQfELqKlvD~YRshI~~TIT~PSESLL-nELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq   80 (557)
                      +|.+|.+|-.....|-..|-.++..|=..+| ++|..+-+-++.-+.+|--|+++++.++        |   .. +.+|+
T Consensus       101 ~g~a~~~ia~~~~~~~~~v~~~~l~pL~~~l~~d~k~i~~~rKkle~~rLd~D~ak~k~~--------k---~~-eeEl~  168 (240)
T 2z0v_A          101 VGESMKLMAEVKDSLDINVKQTFIDPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRVG--------K---IP-DEEVR  168 (240)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTTT--------S---SC-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------c---cc-HHHHH
Confidence            5788999999999999999999999999999 7999999999999999999999864442        2   12 44999


Q ss_pred             HHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHHH
Q 008674           81 AANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRL  139 (557)
Q Consensus        81 ~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk~  139 (557)
                      .|.++|++-...++-.|..|..... ..|-+-..=-.|||.||++|...|+.|.|.+..
T Consensus       169 ~A~~~fe~~~e~~~~~m~~~~~~~~-e~l~~l~~~v~aQl~y~~~~~e~L~~l~~~l~~  226 (240)
T 2z0v_A          169 QAVEKFEESKELAERSMFNFLENDV-EQVSQLAVFIEAALDYHRQSTEILQELQSKLQM  226 (240)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888888878877776643 233344555679999999999999999998753

>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1

Probab=97.07  E-value=0.0035  Score=57.71  Aligned_cols=135  Identities=13%  Similarity=0.081  Sum_probs=98.7

Q ss_pred             HHHHHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHH---hhc-CCCCCCCCccchHHHHHHHHH
Q 008674            9 LQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQR---EKG-KSKSGKGESVSLQQQLQAAND   84 (557)
Q Consensus         9 LqKlvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~---eKG-rsk~~KgEs~s~q~QLq~a~~   84 (557)
                      +..+.+.|-.+|..++..|-..|++.+..+..+-+.++.||-=|+..++.+.   +|+ ++ .-...-...+++|+.|.+
T Consensus       102 ~~~~~~~~~~~~~~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k~-kd~~kl~~ae~el~~ak~  180 (244)
T 1uru_A          102 SESLWADFAHKLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKR-KDDVKLTKGREQLEEARR  180 (244)
T ss_dssp             HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBT-TBCCTTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHH
Confidence            5556667778888889999999999999999999999999999999876432   333 22 111222224558999999


Q ss_pred             HHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHHHHHhhh
Q 008674           85 EYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQ  144 (557)
Q Consensus        85 EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk~vaE~Q  144 (557)
                      +|+.-..++.=-|-.|-+....-+...-.---.+|+.||+...+.++.+.+-++-+.+++
T Consensus       181 ~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~fv~~q~~~~~~~~~~~~~l~~~~~~l~~~~  240 (244)
T 1uru_A          181 TYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLATES  240 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            999866666555555544444444444455567899999999999999999888877664

>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A

Probab=95.76  E-value=0.022  Score=53.20  Aligned_cols=127  Identities=13%  Similarity=0.074  Sum_probs=85.3

Q ss_pred             HHHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCc--cchHHHHHHHHHHHHH
Q 008674           11 KLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGES--VSLQQQLQAANDEYEE   88 (557)
Q Consensus        11 KlvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs--~s~q~QLq~a~~EY~E   88 (557)
                      .++..|...|-..+..|-..|++.+..|..+-+.++.||-=|+..++.+ +|-+.|..|.|.  ...+++|+.|.++|++
T Consensus       119 ~~~~d~~~~l~~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l-~kl~~k~~kd~~kl~kae~el~~ak~~ye~  197 (251)
T 2fic_A          119 LLWMDYHQKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHY-ESLQTAKKKDEAKIAKAEEELIKAQKVFEE  197 (251)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHC-------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHHH-HHHHhcCcCcHHHHHHHHHHHHHHHHHHHH
Confidence            4455555566677888999999999999999999999999999887654 222333333332  2345589999999996


Q ss_pred             hHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHH
Q 008674           89 EARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVR  138 (557)
Q Consensus        89 eAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk  138 (557)
                      --.++.=.|-.|.+....-+-..-.--=.+|+.||+.+.+.++.|.+-+.
T Consensus       198 ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~Q~~f~~~~~~~~~~L~~~l~  247 (251)
T 2fic_A          198 MNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV  247 (251)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666555555544443322223333446899999999999998876553

>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}

Probab=91.41  E-value=1.1  Score=42.55  Aligned_cols=136  Identities=11%  Similarity=0.088  Sum_probs=97.3

Q ss_pred             HHHHHHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccc--hHHHHHHHHHH
Q 008674            8 ELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVS--LQQQLQAANDE   85 (557)
Q Consensus         8 ELqKlvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s--~q~QLq~a~~E   85 (557)
                      .++.|...|+..|-..|..|-..+++-+..+..+-...+.|.-=|+.+++.+. |-+.|..|.|.-.  .+.+|+.|..+
T Consensus        97 ~~~~l~~~~~~~l~~~vi~Pl~~~~~~~~~i~k~I~KR~~kllDyd~~~~~~~-kl~~k~~kd~~kl~kae~el~~a~~~  175 (237)
T 4avm_A           97 NNDLLWEDYEEKLADQAVRTMEIYVAQFSEIKERIAKRGRKLVDYDSARHHLE-AVQNAKKKDEAKTAKAEEEFNKAQTV  175 (237)
T ss_dssp             HHHHHHHHHHHHHCCCCCHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCCcHHHHHHHHHHHHHHHHH
Confidence            34567788998888889999999999999999999999999999999886543 2333334655432  33478888899


Q ss_pred             HHHhHhhhhhhhccccccchhhHHHHHHHHH-HHHHHhHHhhccchhhhhhHHHHHHhhhcc
Q 008674           86 YEEEARLCVFRLKSLKQGQYRSLLTQAARHH-AAQLNFFRKGFKSLEAVDTHVRLVAERQHI  146 (557)
Q Consensus        86 Y~EeAtLfvFRLKSLKQGQ~RSLLTQAARHH-AAQL~fFrkgLKsLEavEPHVk~vaE~QHI  146 (557)
                      |+.--..+.=-|-.|-+.. ..+|...-.-. .+|.+||..--|....+...+.-+.+ ||-
T Consensus       176 ye~lN~~L~~eLP~l~~~~-~~~~~~~~~~~i~~q~~f~~~~~~~~~~l~~~~~~~~~-~~~  235 (237)
T 4avm_A          176 FEDLNQELLEELPILYNSR-IGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMSKLER-QHS  235 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTC
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-hcC
Confidence            9877776665555554443 34555444444 45999999999999988876666554 443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	557
d1i4da_	200	a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Hum	8e-14
d1urua_	217	a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila	2e-12
d2d4ca1	237	a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sap	2e-10
d2elba1	268	a.238.1.1 (A:6-273) DCC-interacting protein 13-alp	1e-09

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} Length = 200

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (166), Expect = 8e-14
 Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 3/134 (2%)

Query: 1   MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYV---MA 57
              E Q  L K  +     +   +++ +  +   +       +Q +  R   +     + 
Sbjct: 66  YNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLE 125

Query: 58  QQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHA 117
           +     +    +G   S Q   QA  D+YE+       +LK L++ + + +  Q    H 
Sbjct: 126 ELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHN 185

Query: 118 AQLNFFRKGFKSLE 131
           A   +F    K LE
Sbjct: 186 AVSAYFAGNQKQLE 199

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 64.4 bits (156), Expect = 2e-12
 Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 4/148 (2%)

Query: 1   MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYV---MA 57
            L       + L  ++   +   +  P  +   +   ++    + + K    +       
Sbjct: 69  ALQAQTGASESLWADFAHKLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQ 128

Query: 58  QQREKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHA 117
             +     +    +    ++QL+ A   YE         L +L   +   L+T      A
Sbjct: 129 NLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFA 188

Query: 118 AQLNFFRKGFKSLEAVDTHV-RLVAERQ 144
            +  F  +  K    ++  V +L  E Q
Sbjct: 189 TEQVFHNETAKIYSELEAIVDKLATESQ 216

>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Endophilin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 2e-10
 Identities = 24/141 (17%), Positives = 55/141 (39%), Gaps = 14/141 (9%)

Query: 1   MLGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQR 60
            +GE   EL ++ D+    +     +P ++L ++   + +++          E       
Sbjct: 106 EVGEAMRELSEVKDSLDIEVKQNFIDPLQNLHDK--DLREIQSALQHHLKKLEG-RRLDF 162

Query: 61  EKGKSKSGKGESVSLQQQLQAANDEYE---EEARLCVFRLKSLKQGQYRSLLTQAARHHA 117
           +  K + GK       ++L+ A ++++   E A   +F L  +   Q   L         
Sbjct: 163 DYKKKRQGK----IPDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSA----LVQ 214

Query: 118 AQLNFFRKGFKSLEAVDTHVR 138
           AQL + ++  + L+ V   + 
Sbjct: 215 AQLEYHKQAVQILQQVTVRLE 235

>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 268

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (137), Expect = 1e-09
 Identities = 18/130 (13%), Positives = 45/130 (34%), Gaps = 1/130 (0%)

Query: 2   LGEVQFELQKLVDNYRSNIFLTITNPSESLLNE-LRTVEDMKRQCDEKRNVCEYVMAQQR 60
             +V  EL        + +   +  P        L+ +  +K       N  +  + +  
Sbjct: 84  FSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYS 143

Query: 61  EKGKSKSGKGESVSLQQQLQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQL 120
              K +        + + +  +  +  +        L +L+  +  +LL     +  AQ+
Sbjct: 144 RLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQI 203

Query: 121 NFFRKGFKSL 130
           +FF+ G ++L
Sbjct: 204 SFFKMGSENL 213

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	557
d2elba1	268	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	98.84
d1i4da_	200	Arfaptin, Rac-binding fragment {Human (Homo sapien	98.78
d1urua_	217	Amphiphysin {Fruit fly (Drosophila melanogaster) [	98.71
d2d4ca1	237	Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.54
d1y2oa1	248	BAP2/IRSp53 N-terminal domain {Human (Homo sapiens	93.43

>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.5e-09  Score=97.94  Aligned_cols=140  Identities=14%  Similarity=0.174  Sum_probs=119.0

Q ss_pred             cchhhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCC-CCCCccchHHHH
Q 008674            2 LGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKS-GKGESVSLQQQL   79 (557)
Q Consensus         2 LGKvQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~-~KgEs~s~q~QL   79 (557)
                      +|+++.||..+.+.+..++-.+|..|-+++++ +|+.|.|+|+.+|..++-|+.+++.|....+.|. ++.-.-..+ +|
T Consensus        84 f~~~~~el~~~~~~l~~~~~~~~~~pL~~f~~~di~~~ke~kk~fek~~~~yd~~l~k~~~~~k~k~~~~~~~Ea~~-~l  162 (268)
T d2elba1          84 FSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTE-DV  162 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC-----HHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchhhhhHHH-HH
Confidence            46778888888899999999999999999995 6999999999999999999999998876554432 111111244 89


Q ss_pred             HHHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccch-hhhhhHHHHHHh
Q 008674           80 QAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSL-EAVDTHVRLVAE  142 (557)
Q Consensus        80 q~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsL-EavEPHVk~vaE  142 (557)
                      .+++..|+..+.=+++.|..|..++-.-+|........||+.||++|+..| +.++|.++-+.+
T Consensus       163 ~~~r~~f~~~~~d~~~~l~~l~~~k~~~~l~~l~~~~~a~~~ff~~~~~~l~~~l~~~~~~l~~  226 (268)
T d2elba1         163 YTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGT  226 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999987 789999887754

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=4.1e-09  Score=90.40  Aligned_cols=130  Identities=19%  Similarity=0.168  Sum_probs=109.4

Q ss_pred             cchhhHHHHHHHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCC---CCCCCccchHHH
Q 008674            2 LGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSK---SGKGESVSLQQQ   78 (557)
Q Consensus         2 LGKvQfELqKlvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk---~~KgEs~s~q~Q   78 (557)
                      +|.++..+.+..+.....+-.+|..|-..+..++..|.++++.+|.+|.-|+..+..+....+.+   ...+.-...+.+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~kk~~~~~~dyd~~~~k~~~~~~~~~~~~~~~kl~~ae~~  146 (200)
T d1i4da_          67 NAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQAT  146 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccccchhhhHHHHHHH
Confidence            57788888888888888888889888888889999999999999999999999987765433222   222233445669


Q ss_pred             HHHHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchh
Q 008674           79 LQAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLE  131 (557)
Q Consensus        79 Lq~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLE  131 (557)
                      ++.|+.+|+.-...++..|..|.+++.+.++.+-...+.||+.||..|.+.||
T Consensus       147 ~~~a~~~fe~~~~~~~~~l~~l~~~r~~~~~~~l~~~~~~~~~f~~~~~~~le  199 (200)
T d1i4da_         147 FQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLE  199 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999887

>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Amphiphysin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.71  E-value=3.2e-08  Score=85.69  Aligned_cols=142  Identities=12%  Similarity=0.063  Sum_probs=117.2

Q ss_pred             chhhHHHHHHHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHh---hcCCCCCCCCccchHHHH
Q 008674            3 GEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQRE---KGKSKSGKGESVSLQQQL   79 (557)
Q Consensus         3 GKvQfELqKlvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~e---KGrsk~~KgEs~s~q~QL   79 (557)
                      +.+...+.++.+.|...|-.++..|-..++..+..|.++.++++.++.-|+..+..+..   |++......+-...+.++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~v~~pL~~~~~~~~~~~~~~kkr~~~~~dyd~~~~~l~k~~~k~~~~~~~~~l~~~e~~~  150 (217)
T d1urua_          71 QAQTGASESLWADFAHKLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQL  150 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBTTBCCTTTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHH
Confidence            34556778888889999999999999999999999999999999999999998865432   222211222333345599


Q ss_pred             HHHHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHHHHHhhh
Q 008674           80 QAANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVAERQ  144 (557)
Q Consensus        80 q~a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk~vaE~Q  144 (557)
                      +.|+++|+.-...++--|..|.+.+..-+.+.-.....+|+.||+.+.+.++.+++++.-++.+.
T Consensus       151 ~~a~~~fe~~~~~l~~el~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~l~~~~~~l~~~~  215 (217)
T d1urua_         151 EEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLATES  215 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence            99999999999999999999999988888888889999999999999999999999996665543

>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: BAR domain
domain: Endophilin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=4e-08  Score=86.65  Aligned_cols=129  Identities=17%  Similarity=0.263  Sum_probs=98.4

Q ss_pred             cchhhHHHHHHHhhhhccceeeccCCcHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHhhcCCCCCCCCccchHHHHHH
Q 008674            2 LGEVQFELQKLVDNYRSNIFLTITNPSESLLNELRTVEDMKRQCDEKRNVCEYVMAQQREKGKSKSGKGESVSLQQQLQA   81 (557)
Q Consensus         2 LGKvQfELqKlvD~YRshI~~TIT~PSESLLnELrtVEEMKrQCDeKR~vYE~M~a~~~eKGrsk~~KgEs~s~q~QLq~   81 (557)
                      .|.+|.||..+...+-..|..+|..|=..+|+.  .+.++|.+|+..|..|+..+..+... +.|..|   ...+ +|+.
T Consensus       107 ~~~~~~~i~~~~~~~~~~i~~~v~~pl~~~l~~--d~~~~~~~~~~~rk~~d~~~~~~~~~-~~k~~~---~~~e-~l~~  179 (237)
T d2d4ca1         107 VGEAMRELSEVKDSLDIEVKQNFIDPLQNLHDK--DLREIQSALQHHLKKLEGRRLDFDYK-KKRQGK---IPDE-ELRQ  179 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSS---CCHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhh---hhHH-HHHH
Confidence            578999999999999999999999999999983  56778889999999999888655332 222212   1234 7888


Q ss_pred             HHHHHHHhHhhhhhhhccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHH
Q 008674           82 ANDEYEEEARLCVFRLKSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVR  138 (557)
Q Consensus        82 a~~EY~EeAtLfvFRLKSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk  138 (557)
                      |.++|++...-++..|..|..-+ -..+.+---.++||+.||++|++.||.|.|++.
T Consensus       180 a~~~~e~~~~~~~~~l~~l~~~~-~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l~  235 (237)
T d2d4ca1         180 ALEKFDESKEIAESSMFNLLEMD-IEQVSQLSALVQAQLEYHKQAVQILQQVTVRLE  235 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888877666666666664322 224566667899999999999999999999875

>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: IMD domain
domain: BAP2/IRSp53 N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=0.15  Score=45.18  Aligned_cols=139  Identities=9%  Similarity=0.111  Sum_probs=75.1

Q ss_pred             cchhhHHHHHHHhhhhccceeeccCCcHHHHH-HhhhHHHHHHHhhhHHHHHHHHHH--------HHHhh-cCCCCCCCC
Q 008674            2 LGEVQFELQKLVDNYRSNIFLTITNPSESLLN-ELRTVEDMKRQCDEKRNVCEYVMA--------QQREK-GKSKSGKGE   71 (557)
Q Consensus         2 LGKvQfELqKlvD~YRshI~~TIT~PSESLLn-ELrtVEEMKrQCDeKR~vYE~M~a--------~~~eK-Grsk~~KgE   71 (557)
                      +|.++.+|....+.+-.++..++..|=+.+++ .+..|.+.|+..+..+.-|+.-+.        .++.+ +..+..|.+
T Consensus        79 ~~~~~~~i~~~~~~l~~~~~~~~i~PL~~~~~~d~k~i~~~kK~~~k~~k~~~~~l~K~~~~~~k~~kk~~~~~~~~~~~  158 (248)
T d1y2oa1          79 MAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYS  158 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHH
Confidence            36678888888888888999999999999887 568888888877643332322211        11111 111222222


Q ss_pred             ccc--hHHHHHHHHHHHHHhHhhhhhhh-ccccccchhhHHHHHHHHHHHHHHhHHhhccchhhhhhHHHHHH
Q 008674           72 SVS--LQQQLQAANDEYEEEARLCVFRL-KSLKQGQYRSLLTQAARHHAAQLNFFRKGFKSLEAVDTHVRLVA  141 (557)
Q Consensus        72 s~s--~q~QLq~a~~EY~EeAtLfvFRL-KSLKQGQ~RSLLTQAARHHAAQL~fFrkgLKsLEavEPHVk~va  141 (557)
                      .--  ..+-+..++.+|++ +---+|+. --.-.+++.-|..+=..==.||+.||.+|..-|+.+.|=++-++
T Consensus       159 ~~~~~~~e~~~~~~~~~~~-~l~~~~~~~~~eerkr~~~lv~~l~~~~~a~~~~~~q~~~~l~~~~~~~~~~~  230 (248)
T d1y2oa1         159 DKELQYIDAISNKQGELEN-YVSDGYKTALTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPLWQQAC  230 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            100  00011222222211 11111111 11112333333333333335799999999999999999887554