Citrus Sinensis ID: 008708
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 557 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LYT2 | 583 | Pentatricopeptide repeat- | yes | no | 0.928 | 0.886 | 0.724 | 0.0 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.719 | 0.489 | 0.264 | 2e-44 | |
| Q8RWS8 | 822 | Pentatricopeptide repeat- | no | no | 0.707 | 0.479 | 0.254 | 2e-41 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.624 | 0.379 | 0.282 | 7e-41 | |
| Q8L844 | 709 | Pentatricopeptide repeat- | no | no | 0.737 | 0.579 | 0.254 | 1e-40 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.725 | 0.657 | 0.242 | 3e-40 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.795 | 0.593 | 0.253 | 5e-40 | |
| Q9FIT7 | 974 | Pentatricopeptide repeat- | no | no | 0.612 | 0.350 | 0.277 | 5e-40 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.775 | 0.685 | 0.240 | 7e-40 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.635 | 0.591 | 0.269 | 6e-39 |
| >sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/527 (72%), Positives = 441/527 (83%), Gaps = 10/527 (1%)
Query: 1 MGMLAPRKFMQKRRKVEVFKDAADEAGKKNWRRLMNQIEEVGSAVAVLRSERTRG-QPLP 59
MGMLAPRKF+QKRRK+EVFKDAADE +K WR LM +IE GSAV VLR +T G Q LP
Sbjct: 43 MGMLAPRKFLQKRRKMEVFKDAADETDQKRWRGLMLEIESTGSAVPVLRQYKTDGDQGLP 102
Query: 60 KDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVL 119
+DLVLGTLVR KQLKKWN+VSE+LEWLR Q+WW+F+E+DFLMLITAYGK G+FN AE+VL
Sbjct: 103 RDLVLGTLVRFKQLKKWNLVSEILEWLRYQNWWNFSEIDFLMLITAYGKLGNFNGAERVL 162
Query: 120 SFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA 179
S ++K G P+V+S+TALME+YGRGG+ NAEAIFRRMQSSGP PSA+TYQIILK FVE
Sbjct: 163 SVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEG 222
Query: 180 NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQST 239
+KFKEAEEVF TLLDE+KSPLKPDQKM+HMMIYMYKKAG YEKARK+F+ M +GV QST
Sbjct: 223 DKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQST 282
Query: 240 VTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 299
VTYNSLMSFET+YKEVSKIYDQMQR+ +QPDVVSYALLI AYG+ARREEEAL+VFEEMLD
Sbjct: 283 VTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLD 342
Query: 300 AGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEG 359
AGVRPTHKAYNILLDAFAISGMV+QA+TVFK MRRDR PD+ SYTTMLSAYVNASDMEG
Sbjct: 343 AGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEG 402
Query: 360 AEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419
AEKFF+R+K DGF PN++TYGTLIKGYAK N++EKMME+Y+KMR++GIK NQTI TTIMD
Sbjct: 403 AEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMD 462
Query: 420 AYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEP 479
A G+ K+F SA+ WYKEMESCG PPDQKAKN+LLSLA T DE EA EL G N
Sbjct: 463 ASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSLASTQDELEEAKELTGIRNET---- 518
Query: 480 GINGLSISVDEEDDDDDDDEDDDDNIYHDGDGDGDGDDNEDDAEETI 526
+ + DDD+E +D D + +GDD++DDA ET+
Sbjct: 519 -----ATIIARVYGSDDDEEGVEDISSESSDDEDEGDDDDDDARETV 560
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/428 (26%), Positives = 207/428 (48%), Gaps = 27/428 (6%)
Query: 63 VLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEM----DFLMLITAYGKQGDFNKAEKV 118
+L L L KK+++ +W Q D+ M ++I+ GK+G + A +
Sbjct: 138 LLAFLKGLGFHKKFDLALRAFDWFMKQK--DYQSMLDNSVVAIIISMLGKEGRVSSAANM 195
Query: 119 LSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 178
+ + + G++ V S+T+L+ A+ GRY+ A +F++M+ G +P+ +TY +IL +F
Sbjct: 196 FNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVF-- 253
Query: 179 ANKFKEAEEVFMTLLDEEKS-PLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQ 237
K +L+++ KS + PD ++ +I K+ +++A ++F M G
Sbjct: 254 -GKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSY 312
Query: 238 STVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVF 294
VTYN+L+ KE K+ ++M G P +V+Y LI+AY + +EA+ +
Sbjct: 313 DKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELK 372
Query: 295 EEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNA 354
+M + G +P Y LL F +G V+ A ++F+ MR C P+IC++ + Y N
Sbjct: 373 NQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNR 432
Query: 355 SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIF 414
K F + G P+++T+ TL+ + + ++ ++ +M+ G P + F
Sbjct: 433 GKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETF 492
Query: 415 TTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS--------------LAKTAD 460
T++ AY + F+ A+ Y+ M G PD N +L+ LA+ D
Sbjct: 493 NTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMED 552
Query: 461 ERNEANEL 468
R + NEL
Sbjct: 553 GRCKPNEL 560
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/412 (25%), Positives = 188/412 (45%), Gaps = 18/412 (4%)
Query: 87 RIQSW-WDFNEMDFLM-------------LITAYGKQGDFNKAEKVLSFMNKKGYAPSVV 132
R W W N MD ++ LI A G G++ +A +V M G P +V
Sbjct: 190 RAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLV 249
Query: 133 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTL 192
+H ++ AY G +Y A + F M+ + RP T+ II+ + + +A ++F ++
Sbjct: 250 THNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSM 309
Query: 193 LDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLM---SFE 249
E+++ +PD F ++++Y G E R +F M G++ + V+YN+LM +
Sbjct: 310 -REKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVH 368
Query: 250 TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAY 309
+ +++ G+ PDVVSY L+N+YG++R+ +A VF M +P Y
Sbjct: 369 GMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTY 428
Query: 310 NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 369
N L+DA+ +G + +A +F+ M +D P++ S T+L+A + + +
Sbjct: 429 NALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQS 488
Query: 370 DGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 429
G N Y + I Y LEK + +Y MR +K + FT ++ + +
Sbjct: 489 RGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPE 548
Query: 430 AVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGI 481
A+ + KEME P ++ + +L + EA + EP +
Sbjct: 549 AISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDV 600
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (427), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 101/357 (28%), Positives = 187/357 (52%), Gaps = 9/357 (2%)
Query: 102 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 161
+I+ G+ G A+++ GY +V + +AL+ AYGR G ++ A ++F M+ G
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG 298
Query: 162 PRPSALTYQIILKLFVEAN-KFKEAEEVFMTLLDE-EKSPLKPDQKMFHMMIYMYKKAGG 219
RP+ +TY ++ + +FK+ + F DE +++ ++PD+ F+ ++ + + G
Sbjct: 299 LRPNLVTYNAVIDACGKGGMEFKQVAKFF----DEMQRNGVQPDRITFNSLLAVCSRGGL 354
Query: 220 YEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVS---KIYDQMQRAGLQPDVVSYAL 276
+E AR LF M R ++Q +YN+L+ ++ +I QM + P+VVSY+
Sbjct: 355 WEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYST 414
Query: 277 LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR 336
+I+ + KA R +EAL +F EM G+ +YN LL + G ++A + + M
Sbjct: 415 VIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVG 474
Query: 337 CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMM 396
D+ +Y +L Y + +K F +K++ +PN++TY TLI GY+K ++ M
Sbjct: 475 IKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAM 534
Query: 397 EIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILL 453
EI+ + + G++ + +++ ++DA KN SAV EM G P+ N ++
Sbjct: 535 EIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSII 591
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 108/425 (25%), Positives = 208/425 (48%), Gaps = 14/425 (3%)
Query: 36 NQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFN 95
N IE+ + +A +R + + + LV+ +L R ++ ++ E R D
Sbjct: 211 NDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIER-----DKL 265
Query: 96 EMDFLM---LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEA 152
E+D + +I + K GD +KA ++L G + + +++ A GR AEA
Sbjct: 266 ELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEA 325
Query: 153 IFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIY 212
+F ++ SG +P Y +LK +V+ K+AE + + EK + PD+ + ++I
Sbjct: 326 LFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEM---EKRGVSPDEHTYSLLID 382
Query: 213 MYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQP 269
Y AG +E AR + M VQ ++ ++ L++ +++ ++ +M+ G++P
Sbjct: 383 AYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKP 442
Query: 270 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVF 329
D Y ++I+ +GK + A+ F+ ML G+ P +N L+D G A +F
Sbjct: 443 DRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMF 502
Query: 330 KCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 389
+ M R C P +Y M+++Y + + ++ ++K G +PNV+T+ TL+ Y K
Sbjct: 503 EAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKS 562
Query: 390 NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAK 449
+E ++M+ G+KP+ T++ +++AY + + AV ++ M S G P A
Sbjct: 563 GRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLAL 622
Query: 450 NILLS 454
N L++
Sbjct: 623 NSLIN 627
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 107/441 (24%), Positives = 206/441 (46%), Gaps = 37/441 (8%)
Query: 48 LRSERTRGQPLPKDLVLGTLVR-LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAY 106
L E + +P P + L+ + ++KK+++V E + I N + ++I
Sbjct: 52 LFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGV-SHNLYTYNIMINCL 110
Query: 107 GKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA 166
++ + A +L M K GY PS+V+ +L+ + G R A A+ +M G +P
Sbjct: 111 CRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDT 170
Query: 167 LTYQIILKLFVEANKFKEA-------------------------------EEVFMTLLDE 195
+T+ ++ + NK EA ++ + LL++
Sbjct: 171 VTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNK 230
Query: 196 -EKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNY-- 252
EK ++ D ++ +I K + A LF M +G++ TY+SL+S NY
Sbjct: 231 MEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGR 290
Query: 253 -KEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNI 311
+ S++ M + P+VV++ LI+A+ K + EA +F+EM+ + P YN
Sbjct: 291 WSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNS 350
Query: 312 LLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG 371
L++ F + +D+A+ +F M C PD+ +Y T+++ + A + + FR + + G
Sbjct: 351 LINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRG 410
Query: 372 FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAV 431
V N +TY TLI G+ + ++ + ++ +M +G+ PN + T++D KN + A+
Sbjct: 411 LVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAM 470
Query: 432 VWYKEMESCGFPPDQKAKNIL 452
V ++ ++ PD NI+
Sbjct: 471 VVFEYLQKSKMEPDIYTYNIM 491
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 116/457 (25%), Positives = 218/457 (47%), Gaps = 14/457 (3%)
Query: 29 KNWRRLMNQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKW--NVVSEVLEWL 86
K++ RL + I++ S V + ++ L + VL +R K+ + NV E+LE
Sbjct: 142 KSYSRL-SLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQ 200
Query: 87 RIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR 146
+ + +N +LI + G+ + A + M KG P+VV++ L++ Y + +
Sbjct: 201 VSPNVFTYN-----ILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRK 255
Query: 147 YKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKM 206
+ + R M G P+ ++Y +++ + KE V L + + D+
Sbjct: 256 IDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKE---VSFVLTEMNRRGYSLDEVT 312
Query: 207 FHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSL---MSFETNYKEVSKIYDQMQ 263
++ +I Y K G + +A + A M G+ S +TY SL M N + DQM+
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR 372
Query: 264 RAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVD 323
GL P+ +Y L++ + + EA V EM D G P+ YN L++ ++G ++
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432
Query: 324 QARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLI 383
A V + M+ SPD+ SY+T+LS + + D++ A + R + + G P+ ITY +LI
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492
Query: 384 KGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFP 443
+G+ + ++ ++Y++M G+ P++ +T +++AY D + A+ + EM G
Sbjct: 493 QGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVL 552
Query: 444 PDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPG 480
PD ++L++ EA LL + + P
Sbjct: 553 PDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPS 589
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 97/349 (27%), Positives = 172/349 (49%), Gaps = 8/349 (2%)
Query: 102 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 161
LI Y ++ + + ++L M K+ S ++ +++ G A I + M +SG
Sbjct: 388 LIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASG 447
Query: 162 PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSP-LKPDQKMFHMMIYMYKKAGGY 220
RP+ + Y ++K F++ ++F +A M +L E K + PD ++ +I KA
Sbjct: 448 CRPNVVIYTTLIKTFLQNSRFGDA----MRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRM 503
Query: 221 EKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALL 277
++AR M E G++ + TY + +S + + K +M+ G+ P+ V L
Sbjct: 504 DEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGL 563
Query: 278 INAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC 337
IN Y K + EA + + M+D G+ K Y +L++ + VD A +F+ MR
Sbjct: 564 INEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGI 623
Query: 338 SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMME 397
+PD+ SY +++ + +M+ A F + ++G PNVI Y L+ G+ + +EK E
Sbjct: 624 APDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKE 683
Query: 398 IYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 446
+ D+M V G+ PN + TI+D Y K+ D A + EM+ G PD
Sbjct: 684 LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDS 732
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 165 bits (418), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 115/478 (24%), Positives = 220/478 (46%), Gaps = 46/478 (9%)
Query: 44 AVAVLRSERTRGQPLPKDLVLGTLVR-LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLML 102
AVA L E + +P P + L+ + ++ K++VV + E ++ N + +L
Sbjct: 65 AVA-LFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQ-NLGIPHNHYTYSIL 122
Query: 103 ITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP 162
I + ++ A VL M K GY P++V+ ++L+ Y R A A+ +M +G
Sbjct: 123 INCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGY 182
Query: 163 RPSALTYQIILKLFVEANKFKEAEEVFMTLLDE--------------------------- 195
+P+ +T+ ++ NK EA M L+D
Sbjct: 183 QPNTVTFNTLIHGLFLHNKASEA----MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTD 238
Query: 196 ---------EKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLM 246
E+ L+P +++ +I K + A LF M +G++ + VTY+SL+
Sbjct: 239 LAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLI 298
Query: 247 SFETNY---KEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR 303
S NY + S++ M + PDV +++ LI+A+ K + EA +++EM+ +
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID 358
Query: 304 PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKF 363
P+ Y+ L++ F + +D+A+ +F+ M C PD+ +Y T++ + +E +
Sbjct: 359 PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEV 418
Query: 364 FRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK 423
FR + Q G V N +TY LI+G + + + EI+ +M +G+ PN + T++D K
Sbjct: 419 FREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCK 478
Query: 424 NKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGI 481
N + A+V ++ ++ P NI++ A + + +L N + +P +
Sbjct: 479 NGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDV 536
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (410), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 175/393 (44%), Gaps = 39/393 (9%)
Query: 102 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 161
LI + + G KA K+L + G P V+++ ++ Y + G NA ++ RM S
Sbjct: 143 LIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS- 201
Query: 162 PRPSALTYQIILKLFVEANKFKEAEEVF-------------------------------M 190
P +TY IL+ ++ K K+A EV M
Sbjct: 202 --PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAM 259
Query: 191 TLLDEEK-SPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSL---M 246
LLDE + PD +++++ K G ++A K M G Q + +T+N + M
Sbjct: 260 KLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319
Query: 247 SFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH 306
+ + K+ M R G P VV++ +LIN + A+ + E+M G +P
Sbjct: 320 CSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNS 379
Query: 307 KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRR 366
+YN LL F +D+A + M C PDI +Y TML+A +E A + +
Sbjct: 380 LSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ 439
Query: 367 LKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD 426
L G P +ITY T+I G AK K +++ D+MR +KP+ +++++ +
Sbjct: 440 LSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK 499
Query: 427 FDSAVVWYKEMESCGFPPDQKAKN-ILLSLAKT 458
D A+ ++ E E G P+ N I+L L K+
Sbjct: 500 VDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKS 532
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 557 | ||||||
| 224054488 | 575 | predicted protein [Populus trichocarpa] | 0.992 | 0.961 | 0.745 | 0.0 | |
| 449463623 | 580 | PREDICTED: pentatricopeptide repeat-cont | 0.843 | 0.810 | 0.823 | 0.0 | |
| 255583688 | 553 | pentatricopeptide repeat-containing prot | 0.843 | 0.849 | 0.812 | 0.0 | |
| 225446761 | 548 | PREDICTED: pentatricopeptide repeat-cont | 0.861 | 0.875 | 0.790 | 0.0 | |
| 356536414 | 553 | PREDICTED: pentatricopeptide repeat-cont | 0.885 | 0.891 | 0.752 | 0.0 | |
| 356575428 | 562 | PREDICTED: pentatricopeptide repeat-cont | 0.867 | 0.859 | 0.759 | 0.0 | |
| 297820746 | 582 | pentatricopeptide repeat-containing prot | 0.843 | 0.807 | 0.783 | 0.0 | |
| 30694913 | 583 | pentatricopeptide repeat-containing prot | 0.928 | 0.886 | 0.724 | 0.0 | |
| 42572723 | 590 | pentatricopeptide repeat-containing prot | 0.928 | 0.876 | 0.724 | 0.0 | |
| 357444885 | 553 | Pentatricopeptide repeat-containing prot | 0.863 | 0.869 | 0.758 | 0.0 |
| >gi|224054488|ref|XP_002298285.1| predicted protein [Populus trichocarpa] gi|222845543|gb|EEE83090.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/559 (74%), Positives = 477/559 (85%), Gaps = 6/559 (1%)
Query: 1 MGMLAPRKFMQKRRKVEVFKDAADEAGKKNWRRLMNQIEEVGSAVAVLRSERTRGQPLPK 60
MGML+PRKF+QKRRKVEVFKDA+DEA +KNWRRLM QIE+ GSAV+VLR ER + LP+
Sbjct: 21 MGMLSPRKFLQKRRKVEVFKDASDEADQKNWRRLMKQIEDTGSAVSVLRRERIKKDGLPR 80
Query: 61 DLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLS 120
DLVLGTLVR KQLKKW++VSE+LEWL+ Q WWDFNEMDFLMLITAYGK GDFN AE VL
Sbjct: 81 DLVLGTLVRFKQLKKWDLVSEILEWLQSQHWWDFNEMDFLMLITAYGKLGDFNGAEMVLR 140
Query: 121 FMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 180
MN GY P+VVSHTALMEAYGRGGRY NAEAIFRRMQ+SGP PSALTYQIILK FVE N
Sbjct: 141 SMNGNGYVPNVVSHTALMEAYGRGGRYNNAEAIFRRMQTSGPEPSALTYQIILKTFVEGN 200
Query: 181 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTV 240
KFKEAEEVF TLL++E SPL+PDQKMFHMMIYM KKAG YEKARK+FALMAERGV QSTV
Sbjct: 201 KFKEAEEVFETLLNKENSPLEPDQKMFHMMIYMQKKAGNYEKARKVFALMAERGVPQSTV 260
Query: 241 TYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA 300
TYNSLMSFETNYKEVSKIYDQMQR+GL+PDVVSYALLI AYG+ARREEEALAVFEEMLDA
Sbjct: 261 TYNSLMSFETNYKEVSKIYDQMQRSGLRPDVVSYALLIKAYGRARREEEALAVFEEMLDA 320
Query: 301 GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGA 360
GVRP+HKAYNILLDAFAISGMV+QAR VFK MRRDRC+PD+CSYTTMLSAYVNASDMEGA
Sbjct: 321 GVRPSHKAYNILLDAFAISGMVEQARVVFKSMRRDRCTPDLCSYTTMLSAYVNASDMEGA 380
Query: 361 EKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420
E FF+RL+QDG PNV+TYG LIKG+AKVNNLEKMMEIY++M++N IK NQTI TTIMDA
Sbjct: 381 ENFFKRLRQDGLKPNVVTYGALIKGHAKVNNLEKMMEIYEEMQLNSIKANQTILTTIMDA 440
Query: 421 YGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNE-- 478
YGKNKDF SAV+WYKEME G PPDQKA+NILLSLAKT DE+ EA++L+G +P++
Sbjct: 441 YGKNKDFGSAVIWYKEMEHHGVPPDQKAQNILLSLAKTQDEQKEASQLVG---YPDDCGI 497
Query: 479 PGINGLSISVDEEDDDDDDDEDDDDNIYHDGDGDGDGDDNEDDAEETIACSGKEDELIFF 538
ING S D++ DD+ D++DD + D + D D +D A +T++ S + ++LIF
Sbjct: 498 QSINGASRFADDDGSDDETDDEDDYDEADKNDDEDDCDGVDDTA-KTVSYSKECEDLIFL 556
Query: 539 NGDHQRSQEGLHTLQTVDL 557
+GD+Q + E LH L +DL
Sbjct: 557 DGDNQHNLEALHALTVIDL 575
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463623|ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/470 (82%), Positives = 434/470 (92%)
Query: 1 MGMLAPRKFMQKRRKVEVFKDAADEAGKKNWRRLMNQIEEVGSAVAVLRSERTRGQPLPK 60
MGML PRKF+QKR+K+EVFKD ADEA +KNWRRLMN+IEE GSAV+VLRSER + + +PK
Sbjct: 43 MGMLTPRKFLQKRKKLEVFKDEADEAEQKNWRRLMNEIEETGSAVSVLRSERIKNEAIPK 102
Query: 61 DLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLS 120
DLVLGTLVR KQLKKWN+VSE+LEWLR QSWW+F+EMDF+MLITAYGK GDFN+AEKVL+
Sbjct: 103 DLVLGTLVRFKQLKKWNLVSEILEWLRTQSWWNFSEMDFVMLITAYGKLGDFNRAEKVLN 162
Query: 121 FMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 180
MNKKGYAP+VVSHTALMEAYGRG RY NAEAIFRRMQS GP PSALTYQI+LK FVE +
Sbjct: 163 LMNKKGYAPNVVSHTALMEAYGRGRRYNNAEAIFRRMQSGGPEPSALTYQIMLKTFVEGS 222
Query: 181 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTV 240
KFKEAEE+F +LL++EK LKPDQKMFHM+IYM+KKAG YEKARK+FA MA RGV Q+TV
Sbjct: 223 KFKEAEELFDSLLNKEKPVLKPDQKMFHMIIYMFKKAGNYEKARKVFAEMAARGVPQTTV 282
Query: 241 TYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA 300
TYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLI+AYGKARREEEALAVFEEMLDA
Sbjct: 283 TYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLISAYGKARREEEALAVFEEMLDA 342
Query: 301 GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGA 360
G+RPTHKAYNILLDAFAISGMV+QA+ VFK M+RDRCSPDICSYTTMLSAYVNASDMEGA
Sbjct: 343 GIRPTHKAYNILLDAFAISGMVEQAKIVFKSMKRDRCSPDICSYTTMLSAYVNASDMEGA 402
Query: 361 EKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420
E FFRRLKQDGF PNV+TYGTLIKGYAK+NNLEKM++ Y++M+VNGI+ NQTI TTIMDA
Sbjct: 403 ENFFRRLKQDGFRPNVVTYGTLIKGYAKINNLEKMIKRYEEMKVNGIRVNQTILTTIMDA 462
Query: 421 YGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLG 470
YGKNKDF SAV+W+ E+ESCG PDQKAKNILLSLAKTA+E +EAN+L+G
Sbjct: 463 YGKNKDFGSAVIWFNEIESCGLRPDQKAKNILLSLAKTAEELDEANQLVG 512
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255583688|ref|XP_002532598.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223527686|gb|EEF29795.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/470 (81%), Positives = 425/470 (90%)
Query: 2 GMLAPRKFMQKRRKVEVFKDAADEAGKKNWRRLMNQIEEVGSAVAVLRSERTRGQPLPKD 61
GML+PRKF+Q+R+KVEVFKD ADEA KNWR LM QIEE S V+VL+S+ Q LPK
Sbjct: 46 GMLSPRKFLQRRKKVEVFKDEADEAYHKNWRGLMRQIEETDSPVSVLKSKLINNQSLPKH 105
Query: 62 LVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSF 121
LVLGTLVR KQLKKW++VS++LEW+R QSWWDFNEMD LMLITAYGKQG+F+ AEKVLS+
Sbjct: 106 LVLGTLVRFKQLKKWHLVSQILEWVRTQSWWDFNEMDSLMLITAYGKQGNFSAAEKVLSY 165
Query: 122 MNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 181
MNK GY P+VVSHTALMEAYGRG RY NAEAIFRRMQSSGP+PSA+TYQIILK FVE NK
Sbjct: 166 MNKMGYVPNVVSHTALMEAYGRGARYNNAEAIFRRMQSSGPKPSAVTYQIILKNFVEGNK 225
Query: 182 FKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVT 241
FKEAEEVF TLLDEEKSPLKPDQKMFHMMIYM++KAG YEKAR++FALM +RGV +STVT
Sbjct: 226 FKEAEEVFETLLDEEKSPLKPDQKMFHMMIYMHRKAGNYEKARQIFALMTQRGVPKSTVT 285
Query: 242 YNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG 301
YNSLMSFETNYKEVSKIYDQMQR+GLQPDV+SYALLINAYGKARRE+EALAVFEEMLDAG
Sbjct: 286 YNSLMSFETNYKEVSKIYDQMQRSGLQPDVISYALLINAYGKARREDEALAVFEEMLDAG 345
Query: 302 VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAE 361
VRPTHKAYNILLDAFAISGMV+QARTVFK MRRDR +PD+CSYTTMLSAYVNASDM GAE
Sbjct: 346 VRPTHKAYNILLDAFAISGMVEQARTVFKSMRRDRYTPDLCSYTTMLSAYVNASDMAGAE 405
Query: 362 KFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 421
FF RLKQDG PNV+TYG LIKGYAK NNL+KMME Y++M++ G+K NQTIFTTIMDAY
Sbjct: 406 NFFNRLKQDGLEPNVVTYGALIKGYAKTNNLDKMMEKYEEMQLRGVKANQTIFTTIMDAY 465
Query: 422 GKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGN 471
GKNKDF SAV+WYKEME G PPDQKAKNILLSLAKTADE+ EAN+++G+
Sbjct: 466 GKNKDFGSAVIWYKEMEQYGVPPDQKAKNILLSLAKTADEQKEANQMVGH 515
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446761|ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040 [Vitis vinifera] gi|302143502|emb|CBI22063.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/483 (79%), Positives = 430/483 (89%), Gaps = 3/483 (0%)
Query: 1 MGMLAPRKFMQKRRKVEVFKDAADEAGKKNWRRLMNQIEEVGSAVAVLRSERTRGQPLPK 60
+ MLAPRKFMQ+R+K+EVF+DAADEA ++ WRR+M +IEEVGSAV+VL T+ Q LP+
Sbjct: 48 VSMLAPRKFMQRRKKIEVFRDAADEAEQRKWRRMMKEIEEVGSAVSVLS---TKNQALPR 104
Query: 61 DLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLS 120
DLVLGTLVR KQLKKW++VSE+LEWL+ Q WWDF+EMDFLML+TAYGKQGDFNKAE+V
Sbjct: 105 DLVLGTLVRFKQLKKWSLVSEILEWLQTQPWWDFSEMDFLMLVTAYGKQGDFNKAERVFG 164
Query: 121 FMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 180
M+KKGY+PSV+SHTALMEAYG+G +Y AE++FRRM SSGP PSALTYQ+ILK+FVE N
Sbjct: 165 DMHKKGYSPSVISHTALMEAYGKGKQYNKAESVFRRMLSSGPEPSALTYQLILKIFVEGN 224
Query: 181 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTV 240
KFKEAEE F TLLD+EKSPLKPDQKMFHMMIYMY+KAG YEKARK+F LM ERGV QSTV
Sbjct: 225 KFKEAEETFETLLDDEKSPLKPDQKMFHMMIYMYRKAGNYEKARKIFGLMRERGVPQSTV 284
Query: 241 TYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA 300
TYNSLMSFETNYKEVSK YDQMQRAGL+PDVVSYALLINAYGKARREEEALAVFEEMLDA
Sbjct: 285 TYNSLMSFETNYKEVSKTYDQMQRAGLRPDVVSYALLINAYGKARREEEALAVFEEMLDA 344
Query: 301 GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGA 360
GVRPTHKAYNILLDAFAISGMVDQARTVFK MRRDRC+PDICSYTTMLSAYVNASDMEGA
Sbjct: 345 GVRPTHKAYNILLDAFAISGMVDQARTVFKSMRRDRCTPDICSYTTMLSAYVNASDMEGA 404
Query: 361 EKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420
EKFFRRLKQDGF PNV+TYGTLIKGYAK++NLEKMME Y++M+V+GIK NQ I+T +MDA
Sbjct: 405 EKFFRRLKQDGFEPNVVTYGTLIKGYAKISNLEKMMEKYEEMQVHGIKANQAIYTAMMDA 464
Query: 421 YGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPG 480
YGKNKDF SAV W+KEM CG PPD+KA NILLSLAKT E+ EAN L+G + +N
Sbjct: 465 YGKNKDFGSAVFWFKEMGFCGVPPDRKATNILLSLAKTEAEKEEANLLVGYSSKYSNGQM 524
Query: 481 ING 483
NG
Sbjct: 525 DNG 527
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536414|ref|XP_003536733.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/493 (75%), Positives = 428/493 (86%)
Query: 2 GMLAPRKFMQKRRKVEVFKDAADEAGKKNWRRLMNQIEEVGSAVAVLRSERTRGQPLPKD 61
GML PRKFMQ+RRK EVFKDAADEA +KNWRR+M +IEE GSAV+VL SE+ Q +PKD
Sbjct: 41 GMLKPRKFMQRRRKFEVFKDAADEADQKNWRRIMTEIEESGSAVSVLSSEKINNQNIPKD 100
Query: 62 LVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSF 121
L++GTL+R KQLKKW++V E+L+WLR Q+WWDF +MDF MLITAYGK GDFN AEKVL
Sbjct: 101 LLVGTLIRFKQLKKWHLVVEILDWLRTQNWWDFGKMDFFMLITAYGKLGDFNGAEKVLGL 160
Query: 122 MNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 181
MNK GY P+VVS TALMEAYG+GGRY NAEAIFRRMQ GP PSA TYQIILK FV+ NK
Sbjct: 161 MNKNGYVPNVVSQTALMEAYGKGGRYNNAEAIFRRMQKWGPEPSAFTYQIILKTFVQGNK 220
Query: 182 FKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVT 241
++EAEE+F LL++E SPLKPDQKMF+MMIYMYKKAG YEKARK FALMAERG+QQ+TVT
Sbjct: 221 YREAEELFDNLLNDENSPLKPDQKMFNMMIYMYKKAGSYEKARKTFALMAERGIQQTTVT 280
Query: 242 YNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG 301
YNSLMSFET+YKEVS IYDQMQRA L+PDVVSYALL++AYGKARREEEALAVFEEMLDAG
Sbjct: 281 YNSLMSFETDYKEVSNIYDQMQRADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAG 340
Query: 302 VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAE 361
VRPT KAYNILLDAF+ISGMV+QA+TVFK MRRDR PD+CSYTTMLSAYVNA DMEGAE
Sbjct: 341 VRPTRKAYNILLDAFSISGMVEQAQTVFKSMRRDRYFPDLCSYTTMLSAYVNADDMEGAE 400
Query: 362 KFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 421
KFF+RL QD F PNV+TYGTLIKGYAK+N+LE +M+ Y++M V GIK NQTI TTIMDAY
Sbjct: 401 KFFKRLIQDDFEPNVVTYGTLIKGYAKINDLEMVMKKYEEMLVRGIKANQTILTTIMDAY 460
Query: 422 GKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGI 481
GK+ DFDSAV W+KEMES G PPDQKAKN+LLSL KT +ER EANEL+G+F+ N+ +
Sbjct: 461 GKSGDFDSAVHWFKEMESNGIPPDQKAKNVLLSLPKTDEEREEANELVGHFSENNSLSKV 520
Query: 482 NGLSISVDEEDDD 494
NG+ VDE++++
Sbjct: 521 NGIVKLVDEDEEN 533
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356575428|ref|XP_003555843.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/483 (75%), Positives = 422/483 (87%)
Query: 2 GMLAPRKFMQKRRKVEVFKDAADEAGKKNWRRLMNQIEEVGSAVAVLRSERTRGQPLPKD 61
GML PRKFMQ+RRK EVFKD+ADEA +KNWRR+M +IEE GSAV+VL +E+ Q +PKD
Sbjct: 42 GMLKPRKFMQRRRKFEVFKDSADEADQKNWRRIMTEIEESGSAVSVLSAEKINNQNIPKD 101
Query: 62 LVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSF 121
LV+GTL+R KQLKKWN+V E+LEWLR Q+WWDF +MDF MLITAYGK GDFN AEKVL
Sbjct: 102 LVVGTLIRFKQLKKWNLVVEILEWLRTQNWWDFGKMDFFMLITAYGKLGDFNGAEKVLGL 161
Query: 122 MNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 181
MNK GYAP+VVS TALMEAYG+GGRY NAEAIFRRMQ GP PSA TYQIILK FV+ NK
Sbjct: 162 MNKNGYAPNVVSQTALMEAYGKGGRYNNAEAIFRRMQKWGPEPSAFTYQIILKTFVQGNK 221
Query: 182 FKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVT 241
F+EAEE+F LL++E SPLKPDQKMF+MMIYM+KKAG YEKARK FA MAE G+QQ+TVT
Sbjct: 222 FREAEELFDNLLNDENSPLKPDQKMFNMMIYMHKKAGSYEKARKTFAQMAELGIQQTTVT 281
Query: 242 YNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG 301
YNSLMSFETNYKEVS IYDQMQRA L+PDVVSYALL++AYGKARREEEALAVFEEMLDAG
Sbjct: 282 YNSLMSFETNYKEVSNIYDQMQRADLRPDVVSYALLVSAYGKARREEEALAVFEEMLDAG 341
Query: 302 VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAE 361
+RPT KAYNILLDAF+ISGMV+QA+TVFK MRRDR PD+CSYTTMLSAY+NA DMEGAE
Sbjct: 342 IRPTRKAYNILLDAFSISGMVEQAQTVFKSMRRDRYFPDLCSYTTMLSAYINADDMEGAE 401
Query: 362 KFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 421
KFF+RL QDGF PNV+TYGTLIKGYAK+N+LE +M+ Y++M + GIK NQTI TTIMDAY
Sbjct: 402 KFFKRLIQDGFEPNVVTYGTLIKGYAKINDLEMVMKKYEEMLMRGIKANQTILTTIMDAY 461
Query: 422 GKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGI 481
GK+ DFDSAV W+KEMES G PPDQKAKN+LLSLAKT +ER EANEL+ +F+ ++ P +
Sbjct: 462 GKSGDFDSAVHWFKEMESNGIPPDQKAKNVLLSLAKTDEEREEANELVVHFSENSSLPKV 521
Query: 482 NGL 484
NG+
Sbjct: 522 NGI 524
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297820746|ref|XP_002878256.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297324094|gb|EFH54515.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/471 (78%), Positives = 419/471 (88%), Gaps = 1/471 (0%)
Query: 1 MGMLAPRKFMQKRRKVEVFKDAADEAGKKNWRRLMNQIEEVGSAVAVLRSERTRG-QPLP 59
MGMLAPRKF+QKRRK+EVFKDAADE +K WR LM +IE GSAV VLR RT G Q LP
Sbjct: 43 MGMLAPRKFLQKRRKIEVFKDAADETDQKRWRGLMLEIESTGSAVPVLRQYRTDGDQGLP 102
Query: 60 KDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVL 119
+DLVLGTLVR KQLKKWN+VSE+LEWLR Q+WW+F+EMDFLMLITAYGK G+FN AE+VL
Sbjct: 103 RDLVLGTLVRFKQLKKWNLVSEILEWLRYQNWWNFSEMDFLMLITAYGKLGNFNGAERVL 162
Query: 120 SFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA 179
S ++K G +P+V+S+TALME+YGRGG+ NAEAIFRRMQSSGP PSA+TYQIILK FVE
Sbjct: 163 SVLSKMGSSPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAVTYQIILKTFVEG 222
Query: 180 NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQST 239
+KFKEAEEVF TLLDE+KSPLKPDQKM+HMMIYMYKKAG Y+KARK+F+ M +GV QST
Sbjct: 223 DKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYDKARKVFSSMVGKGVPQST 282
Query: 240 VTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 299
VTYNSLMSFETNYKEVSKIYDQMQR+G+QPDVVSYALLI AYG+ARREEEAL+VFEEMLD
Sbjct: 283 VTYNSLMSFETNYKEVSKIYDQMQRSGIQPDVVSYALLIKAYGRARREEEALSVFEEMLD 342
Query: 300 AGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEG 359
AGVRPTHKAYNILLDAFAISGMV+QA+TVFK MRRDR PD+ SYTTMLSAYVNASDMEG
Sbjct: 343 AGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEG 402
Query: 360 AEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419
AEKFF+R+K DGF PN++TYGT+IKGYAK N++EKMME+Y+KMR++GIK NQTI TTIMD
Sbjct: 403 AEKFFKRIKVDGFEPNIVTYGTMIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMD 462
Query: 420 AYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLG 470
A G+ KDF SA+ WYKEMESCG PPDQKAKN+LLSL T DE +EA EL G
Sbjct: 463 ASGRCKDFGSALGWYKEMESCGVPPDQKAKNVLLSLYSTQDELDEAKELTG 513
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30694913|ref|NP_191463.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|218525907|sp|Q9LYT2.2|PP287_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g59040 gi|332646344|gb|AEE79865.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/527 (72%), Positives = 441/527 (83%), Gaps = 10/527 (1%)
Query: 1 MGMLAPRKFMQKRRKVEVFKDAADEAGKKNWRRLMNQIEEVGSAVAVLRSERTRG-QPLP 59
MGMLAPRKF+QKRRK+EVFKDAADE +K WR LM +IE GSAV VLR +T G Q LP
Sbjct: 43 MGMLAPRKFLQKRRKMEVFKDAADETDQKRWRGLMLEIESTGSAVPVLRQYKTDGDQGLP 102
Query: 60 KDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVL 119
+DLVLGTLVR KQLKKWN+VSE+LEWLR Q+WW+F+E+DFLMLITAYGK G+FN AE+VL
Sbjct: 103 RDLVLGTLVRFKQLKKWNLVSEILEWLRYQNWWNFSEIDFLMLITAYGKLGNFNGAERVL 162
Query: 120 SFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA 179
S ++K G P+V+S+TALME+YGRGG+ NAEAIFRRMQSSGP PSA+TYQIILK FVE
Sbjct: 163 SVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEG 222
Query: 180 NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQST 239
+KFKEAEEVF TLLDE+KSPLKPDQKM+HMMIYMYKKAG YEKARK+F+ M +GV QST
Sbjct: 223 DKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQST 282
Query: 240 VTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 299
VTYNSLMSFET+YKEVSKIYDQMQR+ +QPDVVSYALLI AYG+ARREEEAL+VFEEMLD
Sbjct: 283 VTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLD 342
Query: 300 AGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEG 359
AGVRPTHKAYNILLDAFAISGMV+QA+TVFK MRRDR PD+ SYTTMLSAYVNASDMEG
Sbjct: 343 AGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEG 402
Query: 360 AEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419
AEKFF+R+K DGF PN++TYGTLIKGYAK N++EKMME+Y+KMR++GIK NQTI TTIMD
Sbjct: 403 AEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMD 462
Query: 420 AYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEP 479
A G+ K+F SA+ WYKEMESCG PPDQKAKN+LLSLA T DE EA EL G N
Sbjct: 463 ASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSLASTQDELEEAKELTGIRNET---- 518
Query: 480 GINGLSISVDEEDDDDDDDEDDDDNIYHDGDGDGDGDDNEDDAEETI 526
+ + DDD+E +D D + +GDD++DDA ET+
Sbjct: 519 -----ATIIARVYGSDDDEEGVEDISSESSDDEDEGDDDDDDARETV 560
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42572723|ref|NP_974457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332646343|gb|AEE79864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/527 (72%), Positives = 441/527 (83%), Gaps = 10/527 (1%)
Query: 1 MGMLAPRKFMQKRRKVEVFKDAADEAGKKNWRRLMNQIEEVGSAVAVLRSERTRG-QPLP 59
MGMLAPRKF+QKRRK+EVFKDAADE +K WR LM +IE GSAV VLR +T G Q LP
Sbjct: 50 MGMLAPRKFLQKRRKMEVFKDAADETDQKRWRGLMLEIESTGSAVPVLRQYKTDGDQGLP 109
Query: 60 KDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVL 119
+DLVLGTLVR KQLKKWN+VSE+LEWLR Q+WW+F+E+DFLMLITAYGK G+FN AE+VL
Sbjct: 110 RDLVLGTLVRFKQLKKWNLVSEILEWLRYQNWWNFSEIDFLMLITAYGKLGNFNGAERVL 169
Query: 120 SFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA 179
S ++K G P+V+S+TALME+YGRGG+ NAEAIFRRMQSSGP PSA+TYQIILK FVE
Sbjct: 170 SVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEG 229
Query: 180 NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQST 239
+KFKEAEEVF TLLDE+KSPLKPDQKM+HMMIYMYKKAG YEKARK+F+ M +GV QST
Sbjct: 230 DKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQST 289
Query: 240 VTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 299
VTYNSLMSFET+YKEVSKIYDQMQR+ +QPDVVSYALLI AYG+ARREEEAL+VFEEMLD
Sbjct: 290 VTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLD 349
Query: 300 AGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEG 359
AGVRPTHKAYNILLDAFAISGMV+QA+TVFK MRRDR PD+ SYTTMLSAYVNASDMEG
Sbjct: 350 AGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEG 409
Query: 360 AEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419
AEKFF+R+K DGF PN++TYGTLIKGYAK N++EKMME+Y+KMR++GIK NQTI TTIMD
Sbjct: 410 AEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMD 469
Query: 420 AYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEP 479
A G+ K+F SA+ WYKEMESCG PPDQKAKN+LLSLA T DE EA EL G N
Sbjct: 470 ASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSLASTQDELEEAKELTGIRNET---- 525
Query: 480 GINGLSISVDEEDDDDDDDEDDDDNIYHDGDGDGDGDDNEDDAEETI 526
+ + DDD+E +D D + +GDD++DDA ET+
Sbjct: 526 -----ATIIARVYGSDDDEEGVEDISSESSDDEDEGDDDDDDARETV 567
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357444885|ref|XP_003592720.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355481768|gb|AES62971.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/481 (75%), Positives = 415/481 (86%)
Query: 2 GMLAPRKFMQKRRKVEVFKDAADEAGKKNWRRLMNQIEEVGSAVAVLRSERTRGQPLPKD 61
GML PRKFMQ++RK+ VFKDAADEA +KNW RLM I+E GSAV+VL SE+ + Q +PK
Sbjct: 46 GMLTPRKFMQRKRKMVVFKDAADEAEQKNWWRLMKLIDETGSAVSVLNSEKMKNQTIPKA 105
Query: 62 LVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSF 121
LV+GTL+R KQLKKWN+V+E+LEWLR Q+WWDF +MDF MLITAYGK GDFN AEKVL
Sbjct: 106 LVVGTLMRFKQLKKWNLVAEILEWLRAQNWWDFGKMDFFMLITAYGKLGDFNGAEKVLGL 165
Query: 122 MNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 181
MNK GYAP+VVS TALMEAYG+GGRY NAEAIFRRMQ+ GP PSA TYQIILK FV+ NK
Sbjct: 166 MNKNGYAPNVVSQTALMEAYGKGGRYNNAEAIFRRMQTFGPEPSAFTYQIILKTFVQGNK 225
Query: 182 FKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVT 241
FKEAEEVF LL++EKSPL+PDQKMF+MMIYMYKK+G +EKAR+ FALMAERG++++TVT
Sbjct: 226 FKEAEEVFDKLLNDEKSPLRPDQKMFNMMIYMYKKSGSHEKARQTFALMAERGIKKATVT 285
Query: 242 YNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG 301
YNSLMSFETNYKEVS IYDQMQRA L+PDVVSYALLINAYGKARREEEALAVFEEMLDAG
Sbjct: 286 YNSLMSFETNYKEVSNIYDQMQRADLRPDVVSYALLINAYGKARREEEALAVFEEMLDAG 345
Query: 302 VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAE 361
VRPT KAYNILLDAF+ISGMV+QAR VFK MRRD+ PD+CSYTTMLSAYVNA DMEGAE
Sbjct: 346 VRPTRKAYNILLDAFSISGMVEQARIVFKSMRRDKYMPDLCSYTTMLSAYVNAPDMEGAE 405
Query: 362 KFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 421
KFF+RL QDGF PNV+TYGTLIKGYAK N++EK+ME Y++M GIK NQTI TTIMDA+
Sbjct: 406 KFFKRLIQDGFEPNVVTYGTLIKGYAKANDIEKVMEKYEEMLGRGIKANQTILTTIMDAH 465
Query: 422 GKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGI 481
GKN DFDSAV W+KEM G PDQKAKNILLSLAKT ++ EANEL+ + NN P +
Sbjct: 466 GKNGDFDSAVNWFKEMALNGLLPDQKAKNILLSLAKTEEDIKEANELVLHSIEINNLPKV 525
Query: 482 N 482
N
Sbjct: 526 N 526
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 557 | ||||||
| TAIR|locus:2077735 | 590 | AT3G59040 "AT3G59040" [Arabido | 0.843 | 0.796 | 0.779 | 1.8e-197 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.678 | 0.461 | 0.271 | 3.8e-44 | |
| TAIR|locus:2157607 | 709 | AT5G42310 [Arabidopsis thalian | 0.784 | 0.616 | 0.256 | 2.1e-41 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.775 | 0.578 | 0.262 | 1.3e-39 | |
| TAIR|locus:2054331 | 822 | EMB2654 "EMBRYO DEFECTIVE 2654 | 0.680 | 0.461 | 0.258 | 1.8e-39 | |
| TAIR|locus:2177028 | 816 | AT5G12100 [Arabidopsis thalian | 0.800 | 0.546 | 0.267 | 2.3e-39 | |
| TAIR|locus:2061310 | 918 | GUN1 "AT2G31400" [Arabidopsis | 0.624 | 0.379 | 0.280 | 3.3e-39 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.761 | 0.673 | 0.246 | 2e-38 | |
| TAIR|locus:2178037 | 678 | AT5G39980 [Arabidopsis thalian | 0.734 | 0.603 | 0.242 | 5.8e-38 | |
| TAIR|locus:2174008 | 974 | AT5G61990 "AT5G61990" [Arabido | 0.617 | 0.353 | 0.274 | 9.6e-38 |
| TAIR|locus:2077735 AT3G59040 "AT3G59040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1912 (678.1 bits), Expect = 1.8e-197, P = 1.8e-197
Identities = 367/471 (77%), Positives = 417/471 (88%)
Query: 1 MGMLAPRKFMQKRRKVEVFKDAADEAGKKNWRRLMNQIEEVGSAVAVLRSERTRG-QPLP 59
MGMLAPRKF+QKRRK+EVFKDAADE +K WR LM +IE GSAV VLR +T G Q LP
Sbjct: 50 MGMLAPRKFLQKRRKMEVFKDAADETDQKRWRGLMLEIESTGSAVPVLRQYKTDGDQGLP 109
Query: 60 KDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVL 119
+DLVLGTLVR KQLKKWN+VSE+LEWLR Q+WW+F+E+DFLMLITAYGK G+FN AE+VL
Sbjct: 110 RDLVLGTLVRFKQLKKWNLVSEILEWLRYQNWWNFSEIDFLMLITAYGKLGNFNGAERVL 169
Query: 120 SFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA 179
S ++K G P+V+S+TALME+YGRGG+ NAEAIFRRMQSSGP PSA+TYQIILK FVE
Sbjct: 170 SVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEG 229
Query: 180 NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQST 239
+KFKEAEEVF TLLDE+KSPLKPDQKM+HMMIYMYKKAG YEKARK+F+ M +GV QST
Sbjct: 230 DKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQST 289
Query: 240 VTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 299
VTYNSLMSFET+YKEVSKIYDQMQR+ +QPDVVSYALLI AYG+ARREEEAL+VFEEMLD
Sbjct: 290 VTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLD 349
Query: 300 AGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEG 359
AGVRPTHKAYNILLDAFAISGMV+QA+TVFK MRRDR PD+ SYTTMLSAYVNASDMEG
Sbjct: 350 AGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEG 409
Query: 360 AEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419
AEKFF+R+K DGF PN++TYGTLIKGYAK N++EKMME+Y+KMR++GIK NQTI TTIMD
Sbjct: 410 AEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMD 469
Query: 420 AYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLG 470
A G+ K+F SA+ WYKEMESCG PPDQKAKN+LLSLA T DE EA EL G
Sbjct: 470 ASGRCKNFGSALGWYKEMESCGVPPDQKAKNVLLSLASTQDELEEAKELTG 520
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 472 (171.2 bits), Expect = 3.8e-44, P = 3.8e-44
Identities = 107/394 (27%), Positives = 203/394 (51%)
Query: 74 KKWNVVSEVLEWLRIQSWWDFNEM-D---FLMLITAYGKQGDFNKAEKVLSFMNKKGYAP 129
KK+++ +W Q D+ M D ++I+ GK+G + A + + + + G++
Sbjct: 149 KKFDLALRAFDWFMKQK--DYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSL 206
Query: 130 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVF 189
V S+T+L+ A+ GRY+ A +F++M+ G +P+ +TY +IL +F K
Sbjct: 207 DVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVF---GKMGTPWNKI 263
Query: 190 MTLLDEEKSP-LKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS- 247
+L+++ KS + PD ++ +I K+ +++A ++F M G VTYN+L+
Sbjct: 264 TSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDV 323
Query: 248 FETNY--KEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT 305
+ ++ KE K+ ++M G P +V+Y LI+AY + +EA+ + +M + G +P
Sbjct: 324 YGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPD 383
Query: 306 HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFR 365
Y LL F +G V+ A ++F+ MR C P+IC++ + Y N K F
Sbjct: 384 VFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFD 443
Query: 366 RLKQDGFVPNVITYGTLIKGYAKVNNLEKMME-IYDKMRVNGIKPNQTIFTTIMDAYGKN 424
+ G P+++T+ TL+ + + N ++ + ++ +M+ G P + F T++ AY +
Sbjct: 444 EINVCGLSPDIVTWNTLLAVFGQ-NGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRC 502
Query: 425 KDFDSAVVWYKEMESCGFPPDQKAKN-ILLSLAK 457
F+ A+ Y+ M G PD N +L +LA+
Sbjct: 503 GSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALAR 536
|
|
| TAIR|locus:2157607 AT5G42310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 444 (161.4 bits), Expect = 2.1e-41, P = 2.1e-41
Identities = 116/453 (25%), Positives = 220/453 (48%)
Query: 36 NQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFN 95
N IE+ + +A +R + + + LV+ +L R ++ ++ E R D
Sbjct: 211 NDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIER-----DKL 265
Query: 96 EMDFLM---LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEA 152
E+D + +I + K GD +KA ++L G + + +++ A GR AEA
Sbjct: 266 ELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEA 325
Query: 153 IFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIY 212
+F ++ SG +P Y +LK +V+ K+AE + + EK + PD+ + ++I
Sbjct: 326 LFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEM---EKRGVSPDEHTYSLLID 382
Query: 213 MYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS-FETN--YKEVSKIYDQMQRAGLQP 269
Y AG +E AR + M VQ ++ ++ L++ F +++ ++ +M+ G++P
Sbjct: 383 AYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKP 442
Query: 270 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVF 329
D Y ++I+ +GK + A+ F+ ML G+ P +N L+D G A +F
Sbjct: 443 DRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMF 502
Query: 330 KCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 389
+ M R C P +Y M+++Y + + ++ ++K G +PNV+T+ TL+ Y K
Sbjct: 503 EAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKS 562
Query: 390 NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAK 449
+E ++M+ G+KP+ T++ +++AY + + AV ++ M S G P A
Sbjct: 563 GRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLAL 622
Query: 450 NILLSLAKTADERN-EANELLGNFNHPNNEPGI 481
N L++ A D R+ EA +L +P +
Sbjct: 623 NSLIN-AFGEDRRDAEAFAVLQYMKENGVKPDV 654
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 1.3e-39, P = 1.3e-39
Identities = 117/446 (26%), Positives = 216/446 (48%)
Query: 29 KNWRRLMNQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKW--NVVSEVLEWL 86
K++ RL + I++ S V + ++ L + VL +R K+ + NV E+LE
Sbjct: 142 KSYSRL-SLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLE-- 198
Query: 87 RIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR 146
S N + +LI + G+ + A + M KG P+VV++ L++ Y + +
Sbjct: 199 ---SQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRK 255
Query: 147 YKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKM 206
+ + R M G P+ ++Y +++ + KE V +T ++ L D+
Sbjct: 256 IDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFV-LTEMNRRGYSL--DEVT 312
Query: 207 FHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSL---MSFETNYKEVSKIYDQMQ 263
++ +I Y K G + +A + A M G+ S +TY SL M N + DQM+
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR 372
Query: 264 RAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVD 323
GL P+ +Y L++ + + EA V EM D G P+ YN L++ ++G ++
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432
Query: 324 QARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLI 383
A V + M+ SPD+ SY+T+LS + + D++ A + R + + G P+ ITY +LI
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492
Query: 384 KGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFP 443
+G+ + ++ ++Y++M G+ P++ +T +++AY D + A+ + EM G
Sbjct: 493 QGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVL 552
Query: 444 PDQKAKNILLSLAKTADERNEANELL 469
PD ++L++ EA LL
Sbjct: 553 PDVVTYSVLINGLNKQSRTREAKRLL 578
|
|
| TAIR|locus:2054331 EMB2654 "EMBRYO DEFECTIVE 2654" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 1.8e-39, P = 1.8e-39
Identities = 99/383 (25%), Positives = 183/383 (47%)
Query: 102 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 161
LI A G G++ +A +V M G P +V+H ++ AY G +Y A + F M+ +
Sbjct: 219 LINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAK 278
Query: 162 PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYE 221
RP T+ II+ + + +A ++F ++ E+++ +PD F ++++Y G E
Sbjct: 279 VRPDTTTFNIIIYCLSKLGQSSQALDLFNSMR-EKRAECRPDVVTFTSIMHLYSVKGEIE 337
Query: 222 KARKLFALMAERGVQQSTVTYNSLM-SFETNYKEVS--KIYDQMQRAGLQPDVVSYALLI 278
R +F M G++ + V+YN+LM ++ + + + +++ G+ PDVVSY L+
Sbjct: 338 NCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLL 397
Query: 279 NAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCS 338
N+YG++R+ +A VF M +P YN L+DA+ +G + +A +F+ M +D
Sbjct: 398 NSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIK 457
Query: 339 PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEI 398
P++ S T+L+A + + + G N Y + I Y LEK + +
Sbjct: 458 PNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIAL 517
Query: 399 YDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKT 458
Y MR +K + FT ++ + + A+ + KEME P ++ + +L
Sbjct: 518 YQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSK 577
Query: 459 ADERNEANELLGNFNHPNNEPGI 481
+ EA + EP +
Sbjct: 578 QGQVTEAESIFNQMKMAGCEPDV 600
|
|
| TAIR|locus:2177028 AT5G12100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 428 (155.7 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 125/467 (26%), Positives = 224/467 (47%)
Query: 18 VFKDAADEAGKKNWRR---LMNQIEEVGS---AVAVLRSERTRGQPLPKDLVLGTLVRLK 71
V++ A D K N L+N + + G A +L E +G +P +++ T++
Sbjct: 341 VYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGL-VPNEVIYNTMID-G 398
Query: 72 QLKKWNVVSE--VLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAP 129
+K ++V +E + Q + + + LI + + G+ AEK ++ M KG +P
Sbjct: 399 YCRKGDLVGARMKIEAMEKQGMKP-DHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSP 457
Query: 130 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVF 189
SV ++ L+ YGR + I + M+ +G P+ ++Y ++ + +K EA+ V
Sbjct: 458 SVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVK 517
Query: 190 MTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSL---M 246
D E + P ++++M+I G E A + M ++G++ + VTYN+L +
Sbjct: 518 R---DMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGL 574
Query: 247 SFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH 306
S E + ++ R GL+PDV +Y LI+ YG A + +A++EEM +G++PT
Sbjct: 575 SMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTL 634
Query: 307 KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRR 366
K Y++L+ G ++ +F M PD+ Y +L Y DME A ++
Sbjct: 635 KTYHLLISLCTKEG-IELTERLFGEMS---LKPDLLVYNGVLHCYAVHGDMEKAFNLQKQ 690
Query: 367 LKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD 426
+ + + TY +LI G KV L ++ + D+M ++P + I+ + + KD
Sbjct: 691 MIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKD 750
Query: 427 FDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 473
+ SA VWY+EM+ GF D N L+S K EA ++ N
Sbjct: 751 YMSAYVWYREMQEKGFLLDVCIGNELVSGLKEEWRSKEAEIVISEMN 797
|
|
| TAIR|locus:2061310 GUN1 "AT2G31400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 428 (155.7 bits), Expect = 3.3e-39, P = 3.3e-39
Identities = 100/357 (28%), Positives = 187/357 (52%)
Query: 102 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 161
+I+ G+ G A+++ GY +V + +AL+ AYGR G ++ A ++F M+ G
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG 298
Query: 162 PRPSALTYQIILKLFVEAN-KFKEAEEVFMTLLDE-EKSPLKPDQKMFHMMIYMYKKAGG 219
RP+ +TY ++ + +FK+ + F DE +++ ++PD+ F+ ++ + + G
Sbjct: 299 LRPNLVTYNAVIDACGKGGMEFKQVAKFF----DEMQRNGVQPDRITFNSLLAVCSRGGL 354
Query: 220 YEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYD---QMQRAGLQPDVVSYAL 276
+E AR LF M R ++Q +YN+L+ ++ ++ QM + P+VVSY+
Sbjct: 355 WEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYST 414
Query: 277 LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR 336
+I+ + KA R +EAL +F EM G+ +YN LL + G ++A + + M
Sbjct: 415 VIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVG 474
Query: 337 CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMM 396
D+ +Y +L Y + +K F +K++ +PN++TY TLI GY+K ++ M
Sbjct: 475 IKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAM 534
Query: 397 EIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILL 453
EI+ + + G++ + +++ ++DA KN SAV EM G P+ N ++
Sbjct: 535 EIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSII 591
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 2.0e-38, P = 2.0e-38
Identities = 108/439 (24%), Positives = 224/439 (51%)
Query: 24 DEAGKK-NWRRL-MNQIEEVGSAVAV-LRSERTRGQPLPKDLVLGTLVR-LKQLKKWNVV 79
D +G + ++R++ +N++ ++ AV L + + +P P + L+ + ++ K+++V
Sbjct: 41 DFSGVRYDYRKISINRLNDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLV 100
Query: 80 SEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALME 139
+ E ++ N + +LI + ++ + A VL+ M K GY P +V+ +L+
Sbjct: 101 ISLGEQMQ-NLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLN 159
Query: 140 AYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEK-S 198
+ G R +A ++ +M G +P + T+ ++ N+ EA + L+D
Sbjct: 160 GFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEA----VALVDRMVVK 215
Query: 199 PLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVS-- 256
+PD + +++ K G + A L M + ++ V YN+++ NYK V+
Sbjct: 216 GCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDA 275
Query: 257 -KIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDA 315
++ +M G++P+VV+Y LI R +A + +M++ + P ++ L+DA
Sbjct: 276 LNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 335
Query: 316 FAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFR-RLKQDGFVP 374
F G + +A ++ M + PDI +Y+++++ + ++ A+ F + +D F P
Sbjct: 336 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCF-P 394
Query: 375 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWY 434
NV+TY TLIKG+ K +++ ME++ +M G+ N +TT++ + + ++ D+A + +
Sbjct: 395 NVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVF 454
Query: 435 KEMESCGFPPDQKAKNILL 453
K+M S G PD +ILL
Sbjct: 455 KQMVSDGVLPDIMTYSILL 473
|
|
| TAIR|locus:2178037 AT5G39980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 412 (150.1 bits), Expect = 5.8e-38, P = 5.8e-38
Identities = 104/429 (24%), Positives = 220/429 (51%)
Query: 61 DLVL-GTLVRL-KQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKV 118
DLVL L+ L ++L ++ + L+ +S + + + +I YGK F +A +
Sbjct: 224 DLVLYSNLIELSRRLCDYSKAISIFSRLK-RSGITPDLVAYNSMINVYGKAKLFREARLL 282
Query: 119 LSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 178
+ MN+ G P+ VS++ L+ Y ++ A ++F M+ T I++ ++ +
Sbjct: 283 IKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQ 342
Query: 179 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQS 238
+ KEA+ +F +L K ++P+ ++ ++ +Y +A + +A LF LM + ++Q+
Sbjct: 343 LDMVKEADRLFWSL---RKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQN 399
Query: 239 TVTYNSLMSF--ET-NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFE 295
VTYN+++ +T +++ + + +MQ G++P+ ++Y+ +I+ +GKA + + A +F+
Sbjct: 400 VVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQ 459
Query: 296 EMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS 355
++ +GV Y ++ A+ G++ A+ + ++ PD T ++ A
Sbjct: 460 KLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKL----PDNIPRETAITILAKAG 515
Query: 356 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFT 415
E A FR+ + G V ++ +G +I Y++ ++E+++KMR G P+ +
Sbjct: 516 RTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIA 575
Query: 416 TIMDAYGKNKDFDSAVVWYKEM--ESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 473
+++AYGK ++F+ A Y+EM E C FP + + +LSL + + L F
Sbjct: 576 MVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHFQ--MLSLYSSKKDFEMVESL---FQ 630
Query: 474 HPNNEPGIN 482
++P +N
Sbjct: 631 RLESDPNVN 639
|
|
| TAIR|locus:2174008 AT5G61990 "AT5G61990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 9.6e-38, P = 9.6e-38
Identities = 96/350 (27%), Positives = 174/350 (49%)
Query: 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQ 158
+ LI Y ++ + + ++L M K+ S ++ +++ G A I + M
Sbjct: 385 YASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMI 444
Query: 159 SSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 218
+SG RP+ + Y ++K F++ ++F +A V L + ++ + PD ++ +I KA
Sbjct: 445 ASGCRPNVVIYTTLIKTFLQNSRFGDAMRV---LKEMKEQGIAPDIFCYNSLIIGLSKAK 501
Query: 219 GYEKARKLFALMAERGVQQSTVTYNSLMS--FETN-YKEVSKIYDQMQRAGLQPDVVSYA 275
++AR M E G++ + TY + +S E + + K +M+ G+ P+ V
Sbjct: 502 RMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCT 561
Query: 276 LLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD 335
LIN Y K + EA + + M+D G+ K Y +L++ + VD A +F+ MR
Sbjct: 562 GLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK 621
Query: 336 RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKM 395
+PD+ SY +++ + +M+ A F + ++G PNVI Y L+ G+ + +EK
Sbjct: 622 GIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKA 681
Query: 396 MEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD 445
E+ D+M V G+ PN + TI+D Y K+ D A + EM+ G PD
Sbjct: 682 KELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPD 731
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LYT2 | PP287_ARATH | No assigned EC number | 0.7248 | 0.9281 | 0.8867 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 557 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-26 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-21 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-19 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-18 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-04 | |
| pfam10446 | 449 | pfam10446, DUF2457, Protein of unknown function (D | 3e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 7e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam09538 | 104 | pfam09538, FYDLN_acid, Protein of unknown function | 0.001 | |
| pfam09538 | 104 | pfam09538, FYDLN_acid, Protein of unknown function | 0.001 | |
| pfam11705 | 221 | pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| PHA02608 | 80 | PHA02608, 67, prohead core protein; Provisional | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 | |
| pfam09538 | 104 | pfam09538, FYDLN_acid, Protein of unknown function | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 3e-26
Identities = 73/352 (20%), Positives = 158/352 (44%), Gaps = 8/352 (2%)
Query: 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQ 158
F ML++ D + A +VL + + G +T L+ + G+ +F M
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499
Query: 159 SSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 218
++G + T+ ++ A + +A + + + +KPD+ +F+ +I ++G
Sbjct: 500 NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN---VKPDRVVFNALISACGQSG 556
Query: 219 GYEKARKLFALM-AE-RGVQQSTVTYNSLMSFETNYKEVSK---IYDQMQRAGLQPDVVS 273
++A + A M AE + +T +LM N +V + +Y + ++
Sbjct: 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616
Query: 274 YALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 333
Y + +N+ + + AL+++++M GV+P ++ L+D +G +D+A + + R
Sbjct: 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676
Query: 334 RDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLE 393
+ SY++++ A NA + + A + + +K P V T LI + N L
Sbjct: 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP 736
Query: 394 KMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD 445
K +E+ +M+ G+ PN ++ ++ A + D D + + + G P+
Sbjct: 737 KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 3e-21
Identities = 61/319 (19%), Positives = 149/319 (46%), Gaps = 4/319 (1%)
Query: 102 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 161
LI+ K G + +V M G +V + AL++ R G+ A + M+S
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537
Query: 162 PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYE 221
+P + + ++ ++ A +V + + E P+ PD ++ AG +
Sbjct: 538 VKPDRVVFNALISACGQSGAVDRAFDV-LAEMKAETHPIDPDHITVGALMKACANAGQVD 596
Query: 222 KARKLFALMAERGVQQSTVTYNSLMSFET---NYKEVSKIYDQMQRAGLQPDVVSYALLI 278
+A++++ ++ E ++ + Y ++ + ++ IYD M++ G++PD V ++ L+
Sbjct: 597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV 656
Query: 279 NAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCS 338
+ G A ++A + ++ G++ +Y+ L+ A + + +A +++ ++ +
Sbjct: 657 DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716
Query: 339 PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEI 398
P + + +++A + + A + +K+ G PN ITY L+ + ++ + +++
Sbjct: 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776
Query: 399 YDKMRVNGIKPNQTIFTTI 417
+ + +GIKPN + I
Sbjct: 777 LSQAKEDGIKPNLVMCRCI 795
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 1e-19
Identities = 83/363 (22%), Positives = 165/363 (45%), Gaps = 21/363 (5%)
Query: 117 KVLSFMNKKG-YAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 175
+L M K+G + H +A + K A + + P+ T+ +++ +
Sbjct: 391 DLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI----RNPTLSTFNMLMSV 446
Query: 176 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGV 235
+ A V + L+ E + LK D K++ +I K+G + ++F M GV
Sbjct: 447 CASSQDIDGALRV-LRLVQE--AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV 503
Query: 236 QQSTVTYNSLMSFETNYKEVSKI---YDQMQRAGLQPDVVSYALLINAYGKARREEEALA 292
+ + T+ +L+ +V+K Y M+ ++PD V + LI+A G++ + A
Sbjct: 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563
Query: 293 VFEEMLDAG--VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD--RCSPDICSYTTML 348
V EM + P H L+ A A +G VD+A+ V++ + + +P++ YT +
Sbjct: 564 VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV--YTIAV 621
Query: 349 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIK--GYAKVNNLEKMMEIYDKMRVNG 406
++ D + A + +K+ G P+ + + L+ G+A +L+K EI R G
Sbjct: 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG--DLDKAFEILQDARKQG 679
Query: 407 IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEAN 466
IK ++++M A K++ A+ Y++++S P N L++ ++ +A
Sbjct: 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL 739
Query: 467 ELL 469
E+L
Sbjct: 740 EVL 742
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 1e-18
Identities = 73/296 (24%), Positives = 134/296 (45%), Gaps = 10/296 (3%)
Query: 192 LLDEEKSPLKPDQKMFHMMIY-MYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFET 250
L D EK L K++H + KK ++A + L+ + T+N LMS
Sbjct: 393 LEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLS----TFNMLMSVCA 448
Query: 251 NYKEVSKIYDQM---QRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHK 307
+ +++ + Q AGL+ D Y LI+ K+ + + VF EM++AGV
Sbjct: 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508
Query: 308 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 367
+ L+D A +G V +A + MR PD + ++SA + ++ A +
Sbjct: 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM 568
Query: 368 KQDG--FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNK 425
K + P+ IT G L+K A +++ E+Y + IK ++T +++ +
Sbjct: 569 KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG 628
Query: 426 DFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGI 481
D+D A+ Y +M+ G PD+ + L+ +A A + ++A E+L + + G
Sbjct: 629 DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 8e-18
Identities = 68/305 (22%), Positives = 133/305 (43%), Gaps = 18/305 (5%)
Query: 94 FNEMD----------FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR 143
F+EM F LI + G KA M K P V AL+ A G+
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 144 GGRYKNAEAIFRRMQS-SGP-RPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLK 201
G A + M++ + P P +T ++K A + A+EV+ + + +K
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI---HEYNIK 611
Query: 202 PDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSK---I 258
+++ + + + G ++ A ++ M ++GV+ V +++L+ + ++ K I
Sbjct: 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671
Query: 259 YDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI 318
++ G++ VSY+ L+ A A+ ++AL ++E++ +RPT N L+ A
Sbjct: 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731
Query: 319 SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVIT 378
+ +A V M+R P+ +Y+ +L A D + + K+DG PN++
Sbjct: 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791
Query: 379 YGTLI 383
+
Sbjct: 792 CRCIT 796
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 3e-17
Identities = 68/359 (18%), Positives = 144/359 (40%), Gaps = 18/359 (5%)
Query: 65 GTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNK 124
+ +L + E+ E L + + L+ A + V +
Sbjct: 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES 151
Query: 125 KGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKE 184
G+ P ++ + + G +A +F M P + ++ I+ V+A ++E
Sbjct: 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM----PERNLASWGTIIGGLVDAGNYRE 207
Query: 185 AEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNS 244
A +F + ++ + + F +M+ G ++L + + GV T +
Sbjct: 208 AFALFREMWEDGSDA---EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264
Query: 245 LMSFET---NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG 301
L+ + + ++ ++D M V++ ++ Y EEAL ++ EM D+G
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 302 VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAE 361
V ++I++ F+ +++ A+ + R DI + T ++ Y ME A
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380
Query: 362 KFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420
F R+ + N+I++ LI GY K +E++++M G+ PN F ++ A
Sbjct: 381 NVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 1e-15
Identities = 62/262 (23%), Positives = 113/262 (43%), Gaps = 18/262 (6%)
Query: 136 ALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDE 195
AL++ Y + G ++A +F M P + + + +L + +EA ++ + D
Sbjct: 264 ALIDMYSKCGDIEDARCVFDGM----PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD- 318
Query: 196 EKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEV 255
S + DQ F +MI ++ + E A++ A + G V +L+ + + +
Sbjct: 319 --SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376
Query: 256 SK---IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNIL 312
++D+M R +++S+ LI YG R +A+ +FE M+ GV P H + +
Sbjct: 377 EDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432
Query: 313 LDAFAISGMVDQARTVFKCMRRD-RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG 371
L A SG+ +Q +F+ M + R P Y M+ ++ A RR
Sbjct: 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP--- 489
Query: 372 FVPNVITYGTLIKGYAKVNNLE 393
F P V + L+ NLE
Sbjct: 490 FKPTVNMWAALLTACRIHKNLE 511
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 9e-14
Identities = 79/382 (20%), Positives = 156/382 (40%), Gaps = 23/382 (6%)
Query: 93 DFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEA 152
D + M +I+A GD ++ ++ K G+A V +L++ Y G + AE
Sbjct: 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344
Query: 153 IFRRMQSSGPRPSALTYQIILKLFVEANKFKE-AEEVFMTLLDEEKSPLKPDQKMFHMMI 211
+F RM+ A+++ ++ + E N + A E + + E+ + PD+ ++
Sbjct: 345 VFSRME----TKDAVSWTAMISGY-EKNGLPDKALETYALM---EQDNVSPDEITIASVL 396
Query: 212 YMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSK---IYDQMQRAGLQ 268
G + KL L +G+ V N+L+ + K + K ++ +
Sbjct: 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK--- 453
Query: 269 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTV 328
DV+S+ +I R EAL F +ML ++P L A A G + + +
Sbjct: 454 -DVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEI 511
Query: 329 FKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 388
+ R D +L YV M A F ++D V+++ L+ GY
Sbjct: 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKD-----VVSWNILLTGYVA 566
Query: 389 VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME-SCGFPPDQK 447
+E++++M +G+ P++ F +++ A ++ + ++ ME P+ K
Sbjct: 567 HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626
Query: 448 AKNILLSLAKTADERNEANELL 469
++ L A + EA +
Sbjct: 627 HYACVVDLLGRAGKLTEAYNFI 648
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 2e-13
Identities = 80/358 (22%), Positives = 149/358 (41%), Gaps = 56/358 (15%)
Query: 128 APSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP-RPSALTYQIILKLFVEANKFKEAE 186
S VS + +E GR++ A +F +++ P A TY +++ + + +
Sbjct: 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVK 143
Query: 187 EVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLM 246
V+ + E S +PDQ M + ++ M+ K G AR+LF M ER + ++ +++
Sbjct: 144 AVYWHV---ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTII 196
Query: 247 SF---ETNYKEVSKIYDQM------------------------QRAGLQPDVVSYAL--- 276
NY+E ++ +M RAG Q
Sbjct: 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV 256
Query: 277 --------LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTV 328
LI+ Y K E+A VF+ M T A+N +L +A+ G ++A +
Sbjct: 257 GDTFVSCALIDMYSKCGDIEDARCVFDGM----PEKTTVAWNSMLAGYALHGYSEEALCL 312
Query: 329 FKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 388
+ MR S D +++ M+ + + +E A++ L + GF +++ L+ Y+K
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372
Query: 389 VNNLEKMMEIYDKM-RVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD 445
+E ++D+M R N I N ++ YG + AV ++ M + G P+
Sbjct: 373 WGRMEDARNVFDRMPRKNLISWN-----ALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.3 bits (158), Expect = 2e-13
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 339 PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 388
PD+ +Y T++ Y +E A K F +K+ G PNV TY LI G K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 1e-12
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 269 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFA 317
PDVV+Y LI+ Y K + EEAL +F EM G++P Y+IL+D
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-12
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 374 PNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK 423
P+V+TY TLI GY K +E+ ++++++M+ GIKPN ++ ++D K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 4e-12
Identities = 66/336 (19%), Positives = 124/336 (36%), Gaps = 53/336 (15%)
Query: 110 GDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTY 169
G+ A V M ++ + S L+ Y + G + A ++ RM +G RP T+
Sbjct: 135 GELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTF 190
Query: 170 QIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFAL 229
+L+ EV ++ + + D + + +I MY K G AR +F
Sbjct: 191 PCVLRTCGGIPDLARGREVHAHVV---RFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247
Query: 230 MAERGVQQSTVTYNSLMS--FETNY-KEVSKIYDQMQRAGLQPDVVSYALLINAYGKARR 286
M R +++N+++S FE E +++ M+ + PD+++ +I+A
Sbjct: 248 MPRRDC----ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303
Query: 287 EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTT 346
E + ++ G N L+ + G +A VF M D S+T
Sbjct: 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTA 359
Query: 347 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 406
M+S Y + +P +K +E Y M +
Sbjct: 360 MISGY-----------------EKNGLP------------------DKALETYALMEQDN 384
Query: 407 IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 442
+ P++ +++ A D D V ++ E G
Sbjct: 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 2e-10
Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 22/216 (10%)
Query: 95 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIF 154
+E+ F L+ G GD +KA ++L K+G VS+++LM A +K A ++
Sbjct: 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELY 707
Query: 155 RRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSP-LKPDQKMFHMMIYM 213
++S RP+ T ++ E N+ +A EV L E K L P+ + +++
Sbjct: 708 EDIKSIKLRPTVSTMNALITALCEGNQLPKALEV----LSEMKRLGLCPNTITYSILLVA 763
Query: 214 YKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVS 273
++ + L + E G++ + V + + ++A + V
Sbjct: 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCI---------TGLCLRRFEKACALGEPV- 813
Query: 274 YALLINAYGKARREEE----ALAVFEEMLDAGVRPT 305
+ ++ G+ + E + AL V+ E + AG PT
Sbjct: 814 --VSFDS-GRPQIENKWTSWALMVYRETISAGTLPT 846
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 2e-09
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 308 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN 353
YN L+D + G V++A +F M++ P++ +Y+ ++
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-09
Identities = 58/308 (18%), Positives = 127/308 (41%), Gaps = 52/308 (16%)
Query: 102 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 161
LI Y K GD A V M +K + V+ +++ Y G + A ++ M+ SG
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 162 PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYE 221
T+ I++++F + A++ L+ ++ D ++ +Y K G E
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI---RTGFPLDIVANTALVDLYSKWGRME 377
Query: 222 KARKLFALMAERGVQQSTVTYNSLMSFETNY---KEVSKIYDQMQRAGLQPDVVSYALLI 278
AR +F M + + +++N+L++ N+ + +++++M G+ P+ V++ ++
Sbjct: 378 DARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433
Query: 279 NAYGKARREEEALAVFEEML-DAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC 337
+A + E+ +F+ M + ++P Y +++ G++D+A + +RR
Sbjct: 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA---YAMIRRAPF 490
Query: 338 SP----------------------------------DICSYTTMLSAYVNASDMEGAEKF 363
P + +Y +L+ Y ++ A K
Sbjct: 491 KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550
Query: 364 FRRLKQDG 371
LK+ G
Sbjct: 551 VETLKRKG 558
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 1e-08
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 238 STVTYNSLMS---FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK 283
VTYN+L+ + +E K++++M++ G++P+V +Y++LI+ K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 59/277 (21%), Positives = 109/277 (39%), Gaps = 14/277 (5%)
Query: 110 GDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTY 169
GD + K+ +KG VV AL+E Y + A +F + P +++
Sbjct: 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI----PEKDVISW 458
Query: 170 QIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFAL 229
I+ N+ EA F +L LKP+ + + G +++ A
Sbjct: 459 TSIIAGLRLNNRCFEALIFFRQML----LTLKPNSVTLIAALSACARIGALMCGKEIHAH 514
Query: 230 MAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEE 289
+ G+ N+L+ ++ ++Q + DVVS+ +L+ Y +
Sbjct: 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSM 572
Query: 290 ALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD-RCSPDICSYTTML 348
A+ +F M+++GV P + LL A + SGMV Q F M +P++ Y ++
Sbjct: 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632
Query: 349 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKG 385
A + A F ++ P+ +G L+
Sbjct: 633 DLLGRAGKLTEAYNFINKMPIT---PDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 6e-08
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 129 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 174
P VV++ L++ Y + G+ + A +F M+ G +P+ TY I++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 4e-07
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 101 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR 143
LI Y K+G +A K+ + M K+G P+V +++ L++ +
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 4e-07
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 377 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN 410
+TY TLI G K +E+ +E++ +M+ GI+P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (107), Expect = 1e-06
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 370 DGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 403
G P+V+TY TLI G + +++ +E+ D+M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 2e-06
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 409 PNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS 454
P+ + T++D Y K + A+ + EM+ G P+ +IL+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 5e-06
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 266 GLQPDVVSYALLINAYGKARREEEALAVFEEM 297
GL+PDVV+Y LI+ +A R +EA+ + +EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 6e-06
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 272 VSYALLINAYGKARREEEALAVFEEMLDAGVRPT 305
V+Y LI+ KA R EEAL +F+EM + G+ P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 46/211 (21%), Positives = 95/211 (45%), Gaps = 25/211 (11%)
Query: 102 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 161
L+ Y K G A V M +K +++S AL+ YG GR A +F RM + G
Sbjct: 366 LVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421
Query: 162 PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYE 221
P+ +T+ +L + ++ E+F ++ + + +KP + MI + + G +
Sbjct: 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR--IKPRAMHYACMIELLGREGLLD 479
Query: 222 KARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRA--------GLQPDVV- 272
+A +A++ + + + +L++ +I+ ++ G+ P+ +
Sbjct: 480 EA---YAMIRRAPFKPTVNMWAALLT-------ACRIHKNLELGRLAAEKLYGMGPEKLN 529
Query: 273 SYALLINAYGKARREEEALAVFEEMLDAGVR 303
+Y +L+N Y + R+ EA V E + G+
Sbjct: 530 NYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 9e-06
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 413 IFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD 445
+ T++D K + A+ +KEM+ G PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 1e-05
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 271 VVSYALLINAYGKARREEEALAVFEEMLDAGVRP 304
+ +Y L+ A KA + ALAV EEM +G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 377 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI 407
+TY +LI GY K LE+ +E++ +M+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 202 PDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS 247
PD ++ +I Y K G E+A KLF M +RG++ + TY+ L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 6e-05
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 342 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV 376
+Y T++ A +E A + F+ +K+ G P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 7e-05
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 272 VSYALLINAYGKARREEEALAVFEEMLDAGV 302
V+Y LI+ Y KA + EEAL +F+EM + GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 3e-04
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 376 VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP 409
+ TY L+ AK + + + + ++M+ +G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 447 KAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLSISVDEEDDDDDDDEDDDDNIY 506
K +N + L K A+E E + +++ + D++DD+DD+DEDDDD+
Sbjct: 33 KKENAIRKLGKEAEEEAMEEEDDDEEDDDDDD---DEDEDDDDDDDDEDDEDEDDDDSTL 89
Query: 507 HDGDGDGDGDDNEDDAEETIACSGKEDE 534
HD DG NE D E A S E +
Sbjct: 90 HDDSSADDG--NETDNEAGFADSDDESD 115
|
This is a family of uncharacterized proteins. Length = 449 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.1 bits (97), Expect = 4e-04
Identities = 42/262 (16%), Positives = 85/262 (32%), Gaps = 9/262 (3%)
Query: 146 RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQK 205
A AI + + + L L + EA E+ L+ P
Sbjct: 3 DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELL--PNSDLAG 60
Query: 206 MFHMMIYMYKKAGGYEKARKLFALMAERGVQ-QSTVTYNSLMSFET---NYKEVSKIYDQ 261
+ ++ K G E+A +L E + +L Y+E ++ ++
Sbjct: 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120
Query: 262 MQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKA--YNILLDAFAIS 319
PD+ L + A + EEAL ++E+ L+ A L
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180
Query: 320 GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITY 379
G ++A + + + D + + Y+ E A +++ + + N
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL-DPDNAEAL 239
Query: 380 GTLIKGYAKVNNLEKMMEIYDK 401
L ++ E+ +E +K
Sbjct: 240 YNLALLLLELGRYEEALEALEK 261
|
Length = 291 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 7e-04
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 131 VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP 164
+ ++ AL+ A + G A A+ M++SG +P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 132 VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA 166
V++ L++ + GR + A +F+ M+ G P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 308 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDI 341
YN L+D +G V++A +FK M+ PD+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 309 YNILLDAFAISGMVDQARTVFKCMRRDRCSP 339
YN LL A A +G D A V + M+ P
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 413 IFTTIMDAYGKNKDFDSAVVWYKEMESCGF 442
+ +++ Y K + A+ +KEM+ G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGF 372
+Y +++S Y A +E A + F+ +K+ G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.001
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 486 ISVDEEDDDDDDDEDDDDNIYHDGDGDGDGDDNEDDAEE 524
D+ DDDDD+DDDD++ D D D DD++DD E
Sbjct: 61 EDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLE 99
|
Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104 |
| >gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.001
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 488 VDEEDDDDDDDEDDDDNIYHDGDGDGDGDD---NEDDAEE 524
DDDDDDD+DDD D D D D DD EDD +E
Sbjct: 65 DVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDDDE 104
|
Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104 |
| >gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 6/35 (17%)
Query: 489 DEEDDDDDDDEDDDDNIYH------DGDGDGDGDD 517
+EED+D DDD+DDDD+ Y+ +G+ D DD
Sbjct: 183 EEEDEDFDDDDDDDDDDYNAENYFDNGEDDDYDDD 217
|
RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA pol III-specific, and form the functionally distinct groups (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in S.cerevisiae and H.sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain. Length = 221 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 132 VSHTALMEAYGRGGRYKNAEAIFRRMQSSG 161
V++ +L+ Y + G+ + A +F+ M+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|177433 PHA02608, 67, prohead core protein; Provisional | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 0.002
Identities = 20/32 (62%), Positives = 23/32 (71%)
Query: 490 EEDDDDDDDEDDDDNIYHDGDGDGDGDDNEDD 521
EE +DDDDDEDDDD+ D D D DD+EDD
Sbjct: 48 EEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDD 79
|
Length = 80 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.003
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 301 GVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 333
G++P YN L+D +G VD+A + M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 308 AYNILLDAFAISGMVDQARTVFKCMRRDRC 337
YN L+ + +G +++A +FK M+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.004
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 489 DEEDDDDDDDEDDDDNIYHDGDGDGDGDDNEDDAEE 524
++E+D+DD DDDD+ D D DD+ D ++
Sbjct: 58 EDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDD 93
|
Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown. Length = 104 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 557 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.81 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.8 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.72 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.66 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.65 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.63 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.63 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.62 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.62 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.62 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.61 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.61 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.6 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.6 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.59 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.58 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.56 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.56 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.54 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.54 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.52 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.51 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.46 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.44 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.43 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.42 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.4 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.39 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.38 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.36 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.35 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.34 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.33 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.33 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.32 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.29 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.29 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.29 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.26 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.26 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.26 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.21 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.19 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.16 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.16 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.15 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.14 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.13 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.11 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.09 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.08 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.07 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.06 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.96 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.94 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.93 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.92 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.92 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.88 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.86 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.85 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.83 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.83 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.8 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.79 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.78 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.77 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.77 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.67 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.67 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.67 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.66 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.64 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.63 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.63 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.6 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.6 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.6 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.59 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.59 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.59 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.59 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.58 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.54 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.51 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.5 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.46 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.45 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.44 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.42 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.42 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.42 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.4 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.37 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.35 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.34 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.31 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.28 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.23 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.15 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.1 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.06 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.02 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.98 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.96 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.94 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.93 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.92 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.92 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.91 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.91 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.9 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.88 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.88 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.85 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.84 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.84 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.82 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.77 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.76 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.75 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.73 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.72 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.71 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.69 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.66 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.61 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.61 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.59 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.58 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.57 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.56 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.56 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.54 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.52 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.52 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.51 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.51 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.51 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.5 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.49 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.47 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.45 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.44 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.41 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.41 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.38 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.37 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.37 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.32 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.27 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.27 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.26 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.25 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.2 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.2 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.19 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.12 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.07 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.07 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.02 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.01 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.0 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.96 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.96 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.9 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.89 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.88 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.88 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.85 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.84 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.78 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.77 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.76 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.71 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.67 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.52 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.52 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.47 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.46 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.4 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.31 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.23 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.11 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.96 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.93 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.9 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.86 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.84 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.79 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.65 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.64 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.63 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.58 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.57 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.55 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.47 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.42 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.27 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.23 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.06 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.05 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.99 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.95 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.94 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.9 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.87 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.73 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.66 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.65 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.61 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.59 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.56 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.55 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.52 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.46 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.37 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.37 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.32 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.25 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.24 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.14 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.86 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.78 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.59 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.25 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 93.02 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.81 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.61 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.52 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.51 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.32 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.26 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.23 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.23 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 92.19 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.16 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.15 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.04 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.96 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.95 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.94 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 91.61 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.52 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.0 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 90.8 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.95 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 89.88 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.66 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.62 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.33 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 89.21 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.92 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.79 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.78 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 88.67 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.64 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 88.48 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.41 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.4 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.18 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.64 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.63 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 87.33 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.27 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.26 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 87.08 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.17 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 86.01 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.98 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.93 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.91 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 85.7 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 85.57 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 85.48 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.74 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.22 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 83.89 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 83.88 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 82.91 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 82.89 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.81 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 82.78 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 82.41 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 81.54 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 80.09 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.09 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.05 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-67 Score=560.91 Aligned_cols=503 Identities=18% Similarity=0.238 Sum_probs=464.8
Q ss_pred hhhhhccchhchhcchhHHHHHHHHHhhC---hHHHHHHHhhhcCCCCChHHHHHHHH-HhhhccchHHHHHHHHHHHhc
Q 008708 14 RKVEVFKDAADEAGKKNWRRLMNQIEEVG---SAVAVLRSERTRGQPLPKDLVLGTLV-RLKQLKKWNVVSEVLEWLRIQ 89 (557)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~a~~~~~~~~~~ 89 (557)
.+..+|+ .++.+|+++||.+++++.+.+ +|+.+|.. +...+..|+..++.++. .+...++.+.+.+++..+.+.
T Consensus 240 ~A~~lf~-~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~-M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 317 (857)
T PLN03077 240 SARLVFD-RMPRRDCISWNAMISGYFENGECLEGLELFFT-MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317 (857)
T ss_pred HHHHHHh-cCCCCCcchhHHHHHHHHhCCCHHHHHHHHHH-HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 7888994 458999999999999998766 77888884 46677888888887776 467889999999999999988
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 008708 90 SWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTY 169 (557)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 169 (557)
+ +.++..+|+.|+.+|++.|++++|.++|++|.. ||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 318 g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 318 G-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred C-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 6 789999999999999999999999999999974 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc-
Q 008708 170 QIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF- 248 (557)
Q Consensus 170 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~- 248 (557)
+.++.+|++.|+++.|.++++.+. +.+..|+..+++.|+++|++.|++++|.++|++|.+ ++..+|+.++.+
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~---~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~ 465 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAE---RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGL 465 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHH---HhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHH
Confidence 999999999999999999999998 467899999999999999999999999999999875 588999999986
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 249 --ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQAR 326 (557)
Q Consensus 249 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 326 (557)
.++.++|..+|++|.. ++.||..||+.++.+|++.|..+.+.+++..+.+.|+.++..++++|+.+|+++|++++|.
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 5889999999999986 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HC
Q 008708 327 TVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR-VN 405 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~ 405 (557)
.+|+.+ .||..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|. +.
T Consensus 545 ~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 545 NQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred HHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence 999987 579999999999999999999999999999999999999999999999999999999999999999 68
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCCCcccce
Q 008708 406 GIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLS 485 (557)
Q Consensus 406 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 485 (557)
|+.|+..+|++++.+|++.|++++|.+++++|. +.||..+|.+|+.+|..+|+.+.++...+++.+..+......
T Consensus 620 gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y-- 694 (857)
T PLN03077 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYY-- 694 (857)
T ss_pred CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH--
Confidence 999999999999999999999999999999994 799999999999999999999999999888876555322222
Q ss_pred eeccCCCCCCCCCCCCcccccccCCCCCC-----CCCCccchhhhhhccCCCcc-----eeeecCCcccccccccccccc
Q 008708 486 ISVDEEDDDDDDDEDDDDNIYHDGDGDGD-----GDDNEDDAEETIACSGKEDE-----LIFFNGDHQRSQEGLHTLQTV 555 (557)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~i~~~-----~~~~~~~~~~~~~~~~~l~~~ 555 (557)
.+ +.|+|...|+|++ +.|++++++|.|||||||++ |..+|.+||++.+||..|+.+
T Consensus 695 ~l--------------l~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l 760 (857)
T PLN03077 695 IL--------------LCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGF 760 (857)
T ss_pred HH--------------HHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHH
Confidence 11 6799999999999 58999999999999999997 888999999999999998865
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-66 Score=540.19 Aligned_cols=498 Identities=19% Similarity=0.269 Sum_probs=454.6
Q ss_pred hchhcchhHHHHHHHHHhhC---hHHHHHHHhhhcCCCCChHHHHHHHH-HhhhccchHHHHHHHHHHHhcCCCCCCHhh
Q 008708 23 ADEAGKKNWRRLMNQIEEVG---SAVAVLRSERTRGQPLPKDLVLGTLV-RLKQLKKWNVVSEVLEWLRIQSWWDFNEMD 98 (557)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (557)
....+.++|+.++.++...+ +|+.+|..+.......|+..++..+. .+...++.+.+.+++..+.+.+ +.++..+
T Consensus 82 ~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~ 160 (697)
T PLN03081 82 QIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYM 160 (697)
T ss_pred cCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHH
Confidence 34456779999999998654 78888885443344456666666665 4677788999999999999886 7789999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 178 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 178 (557)
|+.|+.+|++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|+.|+..+|..++.+|++
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 99999999999999999999999974 79999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHH
Q 008708 179 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEV 255 (557)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~a 255 (557)
.|..+.+.+++..+. +.++.||..+++.|+++|++.|++++|.++|+.|.. ++.++||.++.+ .|+.++|
T Consensus 237 ~~~~~~~~~l~~~~~---~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 237 LGSARAGQQLHCCVL---KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred CCcHHHHHHHHHHHH---HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHH
Confidence 999999999999998 467889999999999999999999999999999964 589999999987 5899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008708 256 SKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD 335 (557)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 335 (557)
.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|.
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-- 387 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-- 387 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCcCHHHH
Q 008708 336 RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV-NGIKPNQTIF 414 (557)
Q Consensus 336 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~ 414 (557)
.||..+||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|
T Consensus 388 --~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 388 --RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred --CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 4799999999999999999999999999999999999999999999999999999999999999986 6999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCCCcccceeeccCCCCC
Q 008708 415 TTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLSISVDEEDDD 494 (557)
Q Consensus 415 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (557)
++++++|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+.++.. ...+..
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~-~~~y~~-------- 533 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK-LNNYVV-------- 533 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC-CcchHH--------
Confidence 99999999999999999999876 478999999999999999999999999999987665532 222222
Q ss_pred CCCCCCCcccccccCCCCCC-----CCCCccchhhhhhccCCCcc-----eeeecCCcccccccccccccc
Q 008708 495 DDDDEDDDDNIYHDGDGDGD-----GDDNEDDAEETIACSGKEDE-----LIFFNGDHQRSQEGLHTLQTV 555 (557)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~i~~~-----~~~~~~~~~~~~~~~~~l~~~ 555 (557)
+.++|...|+|++ +.|+++++++.|||||||++ |+.+|.+||.+.+||..|+++
T Consensus 534 -------L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l 597 (697)
T PLN03081 534 -------LLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDEL 597 (697)
T ss_pred -------HHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHH
Confidence 6789999999998 58889999999999999997 888899999999999988765
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-60 Score=497.36 Aligned_cols=470 Identities=18% Similarity=0.316 Sum_probs=424.4
Q ss_pred hhhhhhccchhchhcchhHHHHH-----HHHHhh---ChHHHHHHHhhhcCCCCChHHHHHHHH-HhhhccchHHHHHHH
Q 008708 13 RRKVEVFKDAADEAGKKNWRRLM-----NQIEEV---GSAVAVLRSERTRGQPLPKDLVLGTLV-RLKQLKKWNVVSEVL 83 (557)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~a~~~~ 83 (557)
..++.+|+. ++.++++.|+.+. ..+... .+|..+++.+ . .|+..++..+. .+...++++.|.++|
T Consensus 387 ~eAl~Lfd~-M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M-~----~pd~~Tyn~LL~a~~k~g~~e~A~~lf 460 (1060)
T PLN03218 387 KDCIDLLED-MEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI-R----NPTLSTFNMLMSVCASSQDIDGALRVL 460 (1060)
T ss_pred HHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc-C----CCCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 478888844 4677777666544 445543 3666666633 2 26666666655 577889999999999
Q ss_pred HHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 008708 84 EWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR 163 (557)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 163 (557)
+.+.+.+ +.++..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|+++|++|.+.|+.
T Consensus 461 ~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 461 RLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred HHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 9999876 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008708 164 PSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYN 243 (557)
Q Consensus 164 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 243 (557)
||..+|+.++.+|++.|++++|.++|++|... ..++.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyn 618 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHH
Confidence 99999999999999999999999999999742 25688999999999999999999999999999999999999999999
Q ss_pred HHhcc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 008708 244 SLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG 320 (557)
Q Consensus 244 ~ll~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 320 (557)
.++.+ .|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.||.+|++.|
T Consensus 619 sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G 698 (1060)
T PLN03218 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698 (1060)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 99986 588999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008708 321 MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYD 400 (557)
Q Consensus 321 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 400 (557)
++++|.++|++|...++.||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|++++|.+++.
T Consensus 699 ~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS 778 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHh----c-------------------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 008708 401 KMRVNGIKPNQTIFTTIMDAYGK----N-------------------KDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK 457 (557)
Q Consensus 401 ~m~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 457 (557)
+|.+.|+.||..+|++++..|.+ . +..++|..+|++|.+.|+.||..||..++.++.
T Consensus 779 ~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~ 858 (1060)
T PLN03218 779 QAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQ 858 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Confidence 99999999999999999876432 1 124679999999999999999999999998888
Q ss_pred hcCCHHHHHHHHHhcCCCCCCCCcccceeeccC
Q 008708 458 TADERNEANELLGNFNHPNNEPGINGLSISVDE 490 (557)
Q Consensus 458 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (557)
..+..+.+..+++.+...+..|....++.+++.
T Consensus 859 ~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g 891 (1060)
T PLN03218 859 LPHDATLRNRLIENLGISADSQKQSNLSTLVDG 891 (1060)
T ss_pred ccccHHHHHHHHHHhccCCCCcchhhhHHHHHh
Confidence 999999999999988877777777777777664
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-59 Score=494.98 Aligned_cols=457 Identities=18% Similarity=0.284 Sum_probs=420.7
Q ss_pred hchhcchhHHHHHHHHH---hhChHHHHHHHhhhcCCCC-ChHHHHHHHH-HhhhccchHHHHHHHHHHHhcCCCCCCHh
Q 008708 23 ADEAGKKNWRRLMNQIE---EVGSAVAVLRSERTRGQPL-PKDLVLGTLV-RLKQLKKWNVVSEVLEWLRIQSWWDFNEM 97 (557)
Q Consensus 23 ~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 97 (557)
...+|+..+..+++.+. +.++|+.+|+.| ...+.. ++..++..+. .+...+..+.|.++++.+.. ++..
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M-~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~ 438 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDM-EKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLS 438 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHH-HhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHH
Confidence 34566778888888885 455899999955 444544 4444555454 35667888999999887753 7899
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 177 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 177 (557)
+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|+
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHhcc---cCCH
Q 008708 178 EANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE--RGVQQSTVTYNSLMSF---ETNY 252 (557)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~ll~~---~~~~ 252 (557)
+.|++++|.++|+.|. ..++.||..+|+.|+.+|++.|++++|.++|++|.. .|+.||..+|+.++.+ .|++
T Consensus 519 k~G~~eeAl~lf~~M~---~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMR---SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HCcCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 9999999999999998 467899999999999999999999999999999986 6789999999999986 5889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 253 KEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCM 332 (557)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 332 (557)
++|.++|+.|.+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHH
Q 008708 333 RRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT 412 (557)
Q Consensus 333 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 412 (557)
.+.|+.|+..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..
T Consensus 676 ~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~ 755 (1060)
T PLN03218 676 RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----c-------------------CCHHHHHHHH
Q 008708 413 IFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKT----A-------------------DERNEANELL 469 (557)
Q Consensus 413 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~ 469 (557)
+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ . +..++|..++
T Consensus 756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999876542 1 2346799999
Q ss_pred HhcCCCCCCCCcccceeec
Q 008708 470 GNFNHPNNEPGINGLSISV 488 (557)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~ 488 (557)
++|.+.+..|+..++..++
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL 854 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVL 854 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHH
Confidence 9999999999988877665
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-57 Score=484.81 Aligned_cols=454 Identities=18% Similarity=0.245 Sum_probs=337.6
Q ss_pred hhhhhccchhchhcchhHHHHHHHHHhhC---hHHHHHHHhhhcCCCCChHHHHHHHHH-hhhccchHHHHHHHHHHHhc
Q 008708 14 RKVEVFKDAADEAGKKNWRRLMNQIEEVG---SAVAVLRSERTRGQPLPKDLVLGTLVR-LKQLKKWNVVSEVLEWLRIQ 89 (557)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~a~~~~~~~~~~ 89 (557)
.+..+| +.+++||+++||.+++++.+.+ +|+.+|+. +...+..|+..++.++.+ +...+++..+.+++..+.+.
T Consensus 139 ~A~~~f-~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~-M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 216 (857)
T PLN03077 139 HAWYVF-GKMPERDLFSWNVLVGGYAKAGYFDEALCLYHR-MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF 216 (857)
T ss_pred HHHHHH-hcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHH-HHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc
Confidence 678889 4458899999999999998765 78888885 455688888888877765 56677888899999998887
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 008708 90 SWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTY 169 (557)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 169 (557)
+ +.++..+|+.|+.+|++.|++++|.++|++|.. ||..+||.+|.+|++.|++++|+++|++|...|+.||..||
T Consensus 217 g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty 291 (857)
T PLN03077 217 G-FELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291 (857)
T ss_pred C-CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH
Confidence 6 678889999999999999999999999999874 68889999999999999999999999999998999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc-
Q 008708 170 QIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF- 248 (557)
Q Consensus 170 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~- 248 (557)
+.++.+|++.|+.+.|.+++..+. +.++.||..+|+.|+.+|++.|++++|.++|++|.. |+..+|+.++.+
T Consensus 292 ~~ll~a~~~~g~~~~a~~l~~~~~---~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~ 364 (857)
T PLN03077 292 TSVISACELLGDERLGREMHGYVV---KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGY 364 (857)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHH---HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHH
Confidence 999999999999999999988887 457888888888888888888888888888888863 677888888876
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 249 --ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQAR 326 (557)
Q Consensus 249 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 326 (557)
.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 477888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 008708 327 TVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 406 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (557)
++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|..+.+.+++..+.+.|
T Consensus 445 ~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 445 EVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 88888763 4667777777777777777777777777764 355555544443333333222222222222222221
Q ss_pred C------------------------------CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 407 I------------------------------KPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA 456 (557)
Q Consensus 407 ~------------------------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 456 (557)
+ .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||..++.+|
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 1 3344455555555555555555555555555555555555555555555
Q ss_pred hhcCCHHHHHHHHHhcC-CCCCCCCccccee
Q 008708 457 KTADERNEANELLGNFN-HPNNEPGINGLSI 486 (557)
Q Consensus 457 ~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~ 486 (557)
.+.|++++|.++++.|. ..+..|...++..
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~ 630 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 55555555555555554 3444444444443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=447.02 Aligned_cols=449 Identities=15% Similarity=0.241 Sum_probs=410.3
Q ss_pred hhhhhccchh----chhcchhHHHHHHHHHhhC---hHHHHHHHhhhcCCCCChHHHHHHHH-HhhhccchHHHHHHHHH
Q 008708 14 RKVEVFKDAA----DEAGKKNWRRLMNQIEEVG---SAVAVLRSERTRGQPLPKDLVLGTLV-RLKQLKKWNVVSEVLEW 85 (557)
Q Consensus 14 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~a~~~~~~ 85 (557)
.++.+|..+. ..+|..+|+.++.++.+.+ .+.+++. .+...+..|+..++..+. .+.+.|+.+.|.++|+.
T Consensus 105 ~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~-~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 183 (697)
T PLN03081 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYW-HVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183 (697)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 6777886552 2578899999999998766 3456665 455566777777666665 56788999999999998
Q ss_pred HHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 008708 86 LRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS 165 (557)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 165 (557)
+.+ ++..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+.|..||
T Consensus 184 m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d 258 (697)
T PLN03081 184 MPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258 (697)
T ss_pred CCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence 853 578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008708 166 ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSL 245 (557)
Q Consensus 166 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 245 (557)
..+|+.++.+|++.|++++|.++|+.|. .+|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~l 331 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMP-------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCC-------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999984 468999999999999999999999999999999999999999999
Q ss_pred hcc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 008708 246 MSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMV 322 (557)
Q Consensus 246 l~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 322 (557)
+.+ .+++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.
T Consensus 332 l~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~ 407 (697)
T PLN03081 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRG 407 (697)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCH
Confidence 987 47899999999999999999999999999999999999999999999996 47899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008708 323 DQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ-DGFVPNVITYGTLIKGYAKVNNLEKMMEIYDK 401 (557)
Q Consensus 323 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 401 (557)
++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++
T Consensus 408 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 68999999999999999999999999999887
Q ss_pred HHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC--C
Q 008708 402 MRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTADERNEANELLGNFNHPNN--E 478 (557)
Q Consensus 402 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~ 478 (557)
| ++.|+..+|++++.+|...|+++.|..+++++.+ +.|+ ..+|..+++.|.+.|++++|.++++.|.+.+. .
T Consensus 488 ~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 488 A---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred C---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 6 5789999999999999999999999999999976 4564 57999999999999999999999999987664 4
Q ss_pred CCcccc
Q 008708 479 PGINGL 484 (557)
Q Consensus 479 ~~~~~~ 484 (557)
|+..++
T Consensus 563 ~g~s~i 568 (697)
T PLN03081 563 PACTWI 568 (697)
T ss_pred CCeeEE
Confidence 665543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-25 Score=242.21 Aligned_cols=387 Identities=15% Similarity=0.124 Sum_probs=180.2
Q ss_pred hhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 008708 70 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKN 149 (557)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 149 (557)
+...++++.|.++++.+.+..+ .+...+..++..+...|++++|.+.|+++...+ +.+..++..+...+.+.|++++
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIEP--DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHH
Confidence 3344555555555555544331 233444445555555555555555555554432 2244455555555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008708 150 AEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFAL 229 (557)
Q Consensus 150 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 229 (557)
|..+++++...++ .+...+..++..+...|++++|..+++.+++. .+.+..+|..++.+|...|++++|...|++
T Consensus 552 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 626 (899)
T TIGR02917 552 AVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADA----APDSPEAWLMLGRAQLAAGDLNKAVSSFKK 626 (899)
T ss_pred HHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555544322 23344444445555555555555555554421 133344455555555555555555555555
Q ss_pred HHHcCCC--------------------------------C-CHHHHHHHhc---ccCCHHHHHHHHHHHHHCCCCCCHHH
Q 008708 230 MAERGVQ--------------------------------Q-STVTYNSLMS---FETNYKEVSKIYDQMQRAGLQPDVVS 273 (557)
Q Consensus 230 ~~~~~~~--------------------------------~-~~~~~~~ll~---~~~~~~~a~~~~~~~~~~~~~~~~~~ 273 (557)
+.+.... | +...+..+.. ..+++++|..+++.+.... +.+...
T Consensus 627 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 705 (899)
T TIGR02917 627 LLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALG 705 (899)
T ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHH
Confidence 4433211 1 1222222211 1344444444444444432 123334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 274 YALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN 353 (557)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (557)
+..+...+...|++++|...|+++...+ |+..++..++.++.+.|++++|...++++.+.. +.+...++.+...|..
T Consensus 706 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~ 782 (899)
T TIGR02917 706 FELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLA 782 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4444444445555555555555444432 222344444444555555555555555444432 2344444455555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 008708 354 ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVW 433 (557)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 433 (557)
.|++++|...|+++.+.. +++..+++.++..+...|+ .+|+.+++++.+.. +.+..++..+..++...|++++|..+
T Consensus 783 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred CcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555554443 3444445555555555555 44555555544431 22334444455555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 434 YKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 434 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
++++++.+ +.++.++..++.++.+.|+.++|.++++++
T Consensus 860 ~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 860 LRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555533 224445555555555555555555555544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-24 Score=235.53 Aligned_cols=441 Identities=14% Similarity=0.134 Sum_probs=308.7
Q ss_pred hhhhhccch--hchhcchhHHHHHHHHH---hhChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHh
Q 008708 14 RKVEVFKDA--ADEAGKKNWRRLMNQIE---EVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRI 88 (557)
Q Consensus 14 ~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~ 88 (557)
.+...|..+ ..+.+...|..+...+. +.++|+..+... ....+............+...++++.|.++++.+..
T Consensus 381 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 459 (899)
T TIGR02917 381 KAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETA-AQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEK 459 (899)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH-HhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 556666543 23445566666555444 445677777743 333333334444445566778999999999998887
Q ss_pred cCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 008708 89 QSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALT 168 (557)
Q Consensus 89 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 168 (557)
.. +.++..+..+..+|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++...++. +..+
T Consensus 460 ~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~ 535 (899)
T TIGR02917 460 KQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRA 535 (899)
T ss_pred hC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHH
Confidence 64 3567889999999999999999999999998864 456778899999999999999999999999887544 7888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc
Q 008708 169 YQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF 248 (557)
Q Consensus 169 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 248 (557)
+..+...+.+.|+.++|...+.++... .+.+...+..++..|.+.|++++|..+++.+.+.. +.+...|..+...
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 610 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAEL----NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRA 610 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 999999999999999999999999753 24566788889999999999999999999998754 3345556555443
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 249 ---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQA 325 (557)
Q Consensus 249 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 325 (557)
.+++++|...|+.+.+..+ .+...+..+..++.+.|++++|...++++.+.. +.+..++..++..+...|++++|
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 5889999999998887643 356678888888888889999988888887653 34566777777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 326 RTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
..+++.+.... +.+...+..+...+...|++++|...|+.+...+ |+..++..++.++.+.|++++|.+.++++.+.
T Consensus 689 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 689 KKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77777776554 3455566666666666677777777666666543 33345555555566666666666666555543
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 406 GIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 406 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
. +.+...+..+...|...|++++|..+|+++.+.. ++++..+..+...+...|+ .+|..+++++
T Consensus 766 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 766 H-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred C-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 2 3345555555555555566666666655555432 3334444444444444444 4444444443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-21 Score=181.37 Aligned_cols=370 Identities=14% Similarity=0.135 Sum_probs=307.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 008708 95 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTY-QIIL 173 (557)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~ll 173 (557)
...+|..+.+.+...|++.+|+.+++.+.+.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+.... +.+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 35678889999999999999999999999875 336889999999999999999999999998874 4554433 3455
Q ss_pred HHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHhcccCC
Q 008708 174 KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTY--NSLMSFETN 251 (557)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~ll~~~~~ 251 (557)
..+...|++++|...|.++++.. +-=..+|+.|...+-.+|+...|+..|++..+..+.--...+ ..+.+..+.
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~q----p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQ----PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhC----CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhc
Confidence 56667899999999999998642 222467899999999999999999999999876433222233 335566788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008708 252 YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT-HKAYNILLDAFAISGMVDQARTVFK 330 (557)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 330 (557)
+++|...|.......+. ....+..+...|...|.++.|+..|++.++. .|+ ...|+.|..++-..|++.+|...++
T Consensus 268 ~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred chHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 99999999888775322 4677888999999999999999999999885 444 5689999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC
Q 008708 331 CMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN 410 (557)
Q Consensus 331 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 410 (557)
+.+... +....+.+.|...|...|.++.|..+|....+-. +--...++.|...|-++|++++|+..|++.+. +.|+
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~ 420 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPT 420 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCch
Confidence 998763 4456788999999999999999999999988753 33456789999999999999999999999987 5777
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCCC
Q 008708 411 -QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFNHPNNEPG 480 (557)
Q Consensus 411 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 480 (557)
...|+.+...|-..|+.+.|++.+.+++. +.|.. ..++.|.+.+...|+..+|+..++...+.++.-.
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 68899999999999999999999999987 56765 6889999999999999999999999886666433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-21 Score=188.22 Aligned_cols=310 Identities=16% Similarity=0.145 Sum_probs=239.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 008708 100 LMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS---ALTYQIILKLF 176 (557)
Q Consensus 100 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~ 176 (557)
......+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+......++ ..++..+...|
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 334556778899999999999999875 44677899999999999999999999999987543222 25678888999
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHH
Q 008708 177 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVS 256 (557)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~ 256 (557)
...|++++|..+|+++++. .+.+..+++.++..+.+.|++++|.+.++.+.+.+..+...
T Consensus 118 ~~~g~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------- 177 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDE----GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV---------------- 177 (389)
T ss_pred HHCCCHHHHHHHHHHHHcC----CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH----------------
Confidence 9999999999999999742 24567889999999999999999999999887753221100
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008708 257 KIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR 336 (557)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 336 (557)
.....+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|..+|+++...+
T Consensus 178 ------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 178 ------------EIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred ------------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 011235567778888999999999999988753 3345677778888888999999999998888653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 008708 337 CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTT 416 (557)
Q Consensus 337 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 416 (557)
......+++.++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~ 320 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHR 320 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHH
Confidence 2222456778888888888888888888888775 456666678888888888888888888888764 578778887
Q ss_pred HHHHHHh---cCChhHHHHHHHHHHhCCCCCCHH
Q 008708 417 IMDAYGK---NKDFDSAVVWYKEMESCGFPPDQK 447 (557)
Q Consensus 417 l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~ 447 (557)
++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7776654 457888888888888766666665
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-20 Score=184.12 Aligned_cols=299 Identities=15% Similarity=0.132 Sum_probs=242.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH
Q 008708 137 LMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK 216 (557)
Q Consensus 137 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (557)
....+...|++++|+..|.++.+.++ .+..++..+...+...|++++|..+++.++............++..++..|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34456778999999999999998754 36678888999999999999999999998752110000113567888999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008708 217 AGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEE 296 (557)
Q Consensus 217 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 296 (557)
.|++++|..+|+++.+. .+.+..++..++..+.+.|++++|.+.++.
T Consensus 120 ~g~~~~A~~~~~~~l~~---------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (389)
T PRK11788 120 AGLLDRAEELFLQLVDE---------------------------------GDFAEGALQQLLEIYQQEKDWQKAIDVAER 166 (389)
T ss_pred CCCHHHHHHHHHHHHcC---------------------------------CcchHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 99999999999888764 123567888999999999999999999999
Q ss_pred HHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008708 297 MLDAGVRPT----HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF 372 (557)
Q Consensus 297 ~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 372 (557)
+.+.+..+. ...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++...+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 167 LEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 987653332 1245677788899999999999999998754 34567888899999999999999999999987642
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 373 VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNIL 452 (557)
Q Consensus 373 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 452 (557)
.....+++.++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+ ..|+...+..+
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l 321 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRL 321 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHH
Confidence 223467889999999999999999999999875 56777778899999999999999999999988 46888888888
Q ss_pred HHHHhh---cCCHHHHHHHHHhcCC
Q 008708 453 LSLAKT---ADERNEANELLGNFNH 474 (557)
Q Consensus 453 ~~~~~~---~g~~~~a~~~~~~~~~ 474 (557)
+..+.. .|+.+++..+++++.+
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHHH
Confidence 876654 5688999988887764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-18 Score=189.21 Aligned_cols=361 Identities=14% Similarity=0.060 Sum_probs=261.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHH------------
Q 008708 103 ITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS-ALTY------------ 169 (557)
Q Consensus 103 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~------------ 169 (557)
...+...|++++|+..|++..+.. +.+..++..+..++.+.|++++|+..|++..+..+... ...+
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 456778899999999999998864 44788899999999999999999999999887654322 1111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----
Q 008708 170 QIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSL---- 245 (557)
Q Consensus 170 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---- 245 (557)
......+.+.|++++|+..|+++++.. +.+...+..+..++...|++++|++.|+++.+..... ...+..+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~----P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~-~~a~~~L~~l~ 429 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD----NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN-TNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 122446778899999999999998642 4556778889999999999999999999988754321 1111111
Q ss_pred -----------------------------------------hcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008708 246 -----------------------------------------MSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA 284 (557)
Q Consensus 246 -----------------------------------------l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (557)
....+++++|.+.|++..+..+. +...+..+...|.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 01247788888888888876433 566777888888999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----------------------------
Q 008708 285 RREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD----------------------------- 335 (557)
Q Consensus 285 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------------------------- 335 (557)
|++++|...++++.+.. +.+...+..+...+...++.++|...++.+...
T Consensus 509 G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 509 GQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 99999999998887643 223333333333333444444444444332110
Q ss_pred ----------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 336 ----------RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 336 ----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
..+.+...+..+...+.+.|++++|+..|+++.+.. +.+...+..++..|...|++++|.+.++.+.+.
T Consensus 588 ~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 588 KEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred CHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 123455566778888889999999999999988874 667888889999999999999999999988764
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 406 GIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF--PP---DQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 406 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
. +.+...+..+..++...|++++|.++++++....- +| +...+..+...+...|+.++|...+++..
T Consensus 667 ~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 667 A-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred C-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2 33466777788888899999999999999876321 12 12355666788899999999999998865
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.6e-19 Score=180.94 Aligned_cols=330 Identities=9% Similarity=0.006 Sum_probs=235.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 178 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 178 (557)
...++..+.+.|++++|..+++...... +.+...+..++.++...|++++|+..++++....+. +...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 3445566666777777777777776653 334555666666666677777777777777765433 55666667777777
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HhcccCCHHHHHH
Q 008708 179 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNS-LMSFETNYKEVSK 257 (557)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~a~~ 257 (557)
.|++++|...+++++.. .+.+...+..++..+...|++++|...++.+......+....++. .+...|++++|..
T Consensus 123 ~g~~~~Ai~~l~~Al~l----~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 123 SKQYATVADLAEQAWLA----FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHD 198 (656)
T ss_pred cCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777642 134455666677777777777777777776655433332222221 1223567777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHH
Q 008708 258 IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQ----ARTVFKCMR 333 (557)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~ 333 (557)
.++.+.+....++...+..+...+...|++++|+..++++.+.. +.+...+..+..++...|++++ |...|++..
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 77776665433444555566778888999999999999988764 4567778888889999999885 788899888
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH-H
Q 008708 334 RDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ-T 412 (557)
Q Consensus 334 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~ 412 (557)
+.. +.+...+..+...+...|++++|...+++..... +.+...+..+..++.+.|++++|...|+++.+. .|+. .
T Consensus 278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~ 353 (656)
T PRK15174 278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSK 353 (656)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchH
Confidence 754 4467788889999999999999999999988864 556677888889999999999999999998875 3443 3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 413 IFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 413 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
.+..+..++...|++++|...|+++.+
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344456778899999999999999887
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.7e-18 Score=175.89 Aligned_cols=391 Identities=13% Similarity=0.060 Sum_probs=268.3
Q ss_pred hhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 008708 70 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKN 149 (557)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 149 (557)
+...++++.|.+.|+.+.+.. |++..|..+..+|.+.|++++|++.++...+.. +.+..+|..+..+|...|++++
T Consensus 137 ~~~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 455677888888888777654 456677788888888888888888888877764 3356677778888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCC----------------------------C
Q 008708 150 AEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPL----------------------------K 201 (557)
Q Consensus 150 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------------------~ 201 (557)
|+..|......+...+... ..++..+... .+.......++...... .
T Consensus 213 A~~~~~~~~~~~~~~~~~~-~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQS-AQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred HHHHHHHHHHhCCCccHHH-HHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 8777766544322212111 1111111110 11111111111100000 0
Q ss_pred CCH-HHHHHHHHH---HHHcCCHHHHHHHHHHHHHcC-CCCCH-HHHHHHhc---ccCCHHHHHHHHHHHHHCCCCCCHH
Q 008708 202 PDQ-KMFHMMIYM---YKKAGGYEKARKLFALMAERG-VQQST-VTYNSLMS---FETNYKEVSKIYDQMQRAGLQPDVV 272 (557)
Q Consensus 202 ~~~-~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~-~~~~~-~~~~~ll~---~~~~~~~a~~~~~~~~~~~~~~~~~ 272 (557)
+.. ..+..+... ....+++++|...|+...+.+ ..|+. ..++.+-. ..|++++|...++......+. ...
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHH
Confidence 000 000111110 122368999999999998765 22332 23333222 368999999999999886422 466
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 273 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV 352 (557)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 352 (557)
.|..+...+...|++++|+..|+++++.. +.+..+|..+...+...|++++|...|++..... +.+...+..+...+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHH
Confidence 88888999999999999999999998764 4567888899999999999999999999998764 446777888889999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH------HHHHHHHHHHHhcCC
Q 008708 353 NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ------TIFTTIMDAYGKNKD 426 (557)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~ 426 (557)
+.|++++|+..|++..... +.+...++.+..++...|++++|.+.|++..+.....+. ..++..+..+...|+
T Consensus 445 ~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 9999999999999988763 556788999999999999999999999998875211111 112222233445699
Q ss_pred hhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhcCCC
Q 008708 427 FDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFNHP 475 (557)
Q Consensus 427 ~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (557)
+++|..++++.++. .|+. ..+..+...+...|++++|...+++..+.
T Consensus 524 ~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 524 FIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999998874 4544 56888899999999999999999887644
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-17 Score=184.27 Aligned_cols=420 Identities=12% Similarity=0.042 Sum_probs=295.6
Q ss_pred HHhhChHHHHHHHhhhcCCCCChHHHHHHHHH-hhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 008708 38 IEEVGSAVAVLRSERTRGQPLPKDLVLGTLVR-LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAE 116 (557)
Q Consensus 38 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 116 (557)
..+.++|+..++.. ....+.+.......... ....++++.|.+.++.+.+..+ -+...+..+...+...|++++|+
T Consensus 125 ~g~~~eA~~~~~~~-l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P--~~~~~~~~LA~ll~~~g~~~eAl 201 (1157)
T PRK11447 125 TGRTEEALASYDKL-FNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP--GNTGLRNTLALLLFSSGRRDEGF 201 (1157)
T ss_pred CCCHHHHHHHHHHH-ccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHccCCHHHHH
Confidence 34566888888853 33333333322222222 2345789999999999988863 45677889999999999999999
Q ss_pred HHHHHHHhCCC------------------CCC-HHHH----------------------------------HHHHHHHHh
Q 008708 117 KVLSFMNKKGY------------------APS-VVSH----------------------------------TALMEAYGR 143 (557)
Q Consensus 117 ~~~~~~~~~g~------------------~~~-~~~~----------------------------------~~li~~~~~ 143 (557)
+.|+++..... .+. ...+ ......+..
T Consensus 202 ~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~ 281 (1157)
T PRK11447 202 AVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVD 281 (1157)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 99998765320 000 0001 012345667
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHH------------HHHHH
Q 008708 144 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKM------------FHMMI 211 (557)
Q Consensus 144 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------------~~~l~ 211 (557)
.|++++|+..|++.++..+. +..++..+..++.+.|++++|+..|+++++.... .+.... .....
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~--~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPH--SSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ccchhHHHHHHHhhhHHHHHHHH
Confidence 89999999999999886543 7888899999999999999999999999864321 111111 12235
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HhcccCCHHHHHHHHHHHHHCCCCCCHHHHHH------------
Q 008708 212 YMYKKAGGYEKARKLFALMAERGVQQSTVTYNS---LMSFETNYKEVSKIYDQMQRAGLQPDVVSYAL------------ 276 (557)
Q Consensus 212 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------ 276 (557)
..+.+.|++++|+..|+++...... +...+.. +....|++++|++.|++..+..+. +...+..
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHH
Confidence 5678899999999999999987432 2222222 233468999999999998875432 2323222
Q ss_pred ------------------------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 277 ------------------------------LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQAR 326 (557)
Q Consensus 277 ------------------------------li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 326 (557)
+...+...|++++|+..|++.++.. +.+...+..+...|.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 2334556788899999999888763 335667788888999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH--------------------------------------------HcCCHHHHHH
Q 008708 327 TVFKCMRRDRCSPDICSYTTMLSAYV--------------------------------------------NASDMEGAEK 362 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~--------------------------------------------~~g~~~~A~~ 362 (557)
..++++.+.. +.++..+..+...+. ..|+.++|..
T Consensus 516 ~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 9999887643 223333333333333 3444444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 008708 363 FFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 442 (557)
Q Consensus 363 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 442 (557)
+++ ..+++...+..+...+.+.|++++|+..|+++.+.. +.+...+..++.++...|++++|.+.++.+.+.
T Consensus 595 ~l~-----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-- 666 (1157)
T PRK11447 595 LLR-----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-- 666 (1157)
T ss_pred HHH-----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--
Confidence 443 124566677788999999999999999999999863 456888999999999999999999999988863
Q ss_pred CC-CHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC
Q 008708 443 PP-DQKAKNILLSLAKTADERNEANELLGNFNHP 475 (557)
Q Consensus 443 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (557)
.| +...+..+..++...|++++|.++++++...
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 44 4566777888899999999999999998754
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-18 Score=179.87 Aligned_cols=406 Identities=12% Similarity=0.085 Sum_probs=265.3
Q ss_pred CCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 008708 55 GQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSH 134 (557)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 134 (557)
..+..+..+.--+.-+...|+.+.|.+++..+.... +.....+..+...+.+.|++++|.++|++..+.. +.+...+
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~ 86 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQ 86 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 345555555555555556677778887777776532 2445567778888888888888888888877663 3456677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHH
Q 008708 135 TALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMY 214 (557)
Q Consensus 135 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (557)
..++..+...|++++|+..+++..+..+. +.. +..+..++...|+.++|+..++++++.. +.+...+..++.++
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~----P~~~~~~~~la~~l 160 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA----PQTQQYPTEYVQAL 160 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHH
Confidence 77777888888888888888888776333 455 7777777888888888888888887532 34555666677777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHhcc--------cCCH---HHHHHHHHHHHHC-CCCCCHH-HH-
Q 008708 215 KKAGGYEKARKLFALMAERGVQQST------VTYNSLMSF--------ETNY---KEVSKIYDQMQRA-GLQPDVV-SY- 274 (557)
Q Consensus 215 ~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~ll~~--------~~~~---~~a~~~~~~~~~~-~~~~~~~-~~- 274 (557)
...|..+.|+..++.... .|+. ......+.. .+++ ++|.+.++.+.+. ...|+.. .+
T Consensus 161 ~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~ 237 (765)
T PRK10049 161 RNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ 237 (765)
T ss_pred HHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence 777888888877765543 1211 001111110 1123 5667777777653 1222211 11
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHH
Q 008708 275 ---ALLINAYGKARREEEALAVFEEMLDAGVR-PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP---DICSYTTM 347 (557)
Q Consensus 275 ---~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l 347 (557)
...+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|..+|+++.+..... .......+
T Consensus 238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L 316 (765)
T PRK10049 238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADL 316 (765)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHH
Confidence 11133445668888888888888776422 222 22224667888888888888888876543111 13445566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHH
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQDGF-----------VPN---VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTI 413 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 413 (557)
..++...|++++|..+++.+..... .|+ ...+..+...+...|++++|+++++++.... +.+...
T Consensus 317 ~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l 395 (765)
T PRK10049 317 FYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGL 395 (765)
T ss_pred HHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 6677888888888888888776420 122 2345567777788888888888888887652 455777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC
Q 008708 414 FTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTADERNEANELLGNFNHPN 476 (557)
Q Consensus 414 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 476 (557)
+..++..+...|++++|++.+++.++ +.|+ ...+...+..+...|++++|+.+++++.+..
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 78888888888888888888888877 3454 4566666677888888888888887776433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-18 Score=162.66 Aligned_cols=367 Identities=14% Similarity=0.152 Sum_probs=302.3
Q ss_pred HHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcC
Q 008708 67 LVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVS-HTALMEAYGRGG 145 (557)
Q Consensus 67 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g 145 (557)
..-++..|++..|+.+++.+.+..+ .....|..+..++...|+.+.|.+.|...++.+ |+... ...+...+-..|
T Consensus 123 aN~~kerg~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 123 ANILKERGQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEG 198 (966)
T ss_pred HHHHHHhchHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhc
Confidence 3446777899999999999988763 457789999999999999999999999999874 55443 444555666689
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 008708 146 RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD-QKMFHMMIYMYKKAGGYEKAR 224 (557)
Q Consensus 146 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 224 (557)
+.++|...|.+.++..+. =...|+.|...+-.+|+.-.|++.|+++++. .|+ ...|..|...|...+.++.|.
T Consensus 199 rl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl-----dP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL-----DPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred ccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC-----CCcchHHHhhHHHHHHHHhcchHHH
Confidence 999999999998886442 4567889999999999999999999999853 344 468999999999999999999
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHhcc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008708 225 KLFALMAERGVQQST-VTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA 300 (557)
Q Consensus 225 ~~~~~~~~~~~~~~~-~~~~~ll~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 300 (557)
..|...... +|+. +.+..+-.. .|..+-|+..|++.....+. -...|+.|..++-..|+..+|.+.|.+.+..
T Consensus 273 s~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 273 SCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 999988764 3443 233333322 58899999999999986432 3678999999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHH
Q 008708 301 GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN-VITY 379 (557)
Q Consensus 301 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~ 379 (557)
. +......+.|...|...|.+++|..+|....+-. +.-...++.|...|-++|++++|+..|++.+.. .|+ ...|
T Consensus 350 ~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~ 425 (966)
T KOG4626|consen 350 C-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADAL 425 (966)
T ss_pred C-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHH
Confidence 3 3446688999999999999999999999988642 223467899999999999999999999999875 555 5789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 008708 380 GTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLS 454 (557)
Q Consensus 380 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~ 454 (557)
+.+...|-..|+.+.|.+.+.+.+.. .|. ...++.|...|..+|+..+|++-++..++ ++||. ..+-.++-
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh 498 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLH 498 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHH
Confidence 99999999999999999999999974 565 67899999999999999999999999998 67775 44555544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-17 Score=173.67 Aligned_cols=418 Identities=13% Similarity=0.077 Sum_probs=314.6
Q ss_pred hhchhcchhHHHHHHHHHhhChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHH
Q 008708 22 AADEAGKKNWRRLMNQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLM 101 (557)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 101 (557)
...++=+--|.+|..-.++.++|+.++... ....+.+..........+...++++.|.++++.+.+..+ .++..+..
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~-~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~ 88 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRY-RVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP--QNDDYQRG 88 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHH
Confidence 345666778999999888999999888843 323455555555566667888999999999999887753 45677789
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 102 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 181 (557)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 181 (557)
++.++...|++++|...++++.+.. +.+.. +..+..++...|++++|+..++++.+..+. +...+..+..++...+.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence 9999999999999999999998873 44666 889999999999999999999999997554 66666778888889999
Q ss_pred HHHHHHHHHHhHhccCCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHc-CCCCCHH-HHH--
Q 008708 182 FKEAEEVFMTLLDEEKSPLKPDQ------KMFHMMIYMYK-----KAGGY---EKARKLFALMAER-GVQQSTV-TYN-- 243 (557)
Q Consensus 182 ~~~A~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~~-- 243 (557)
.+.|++.++.+.. .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+.
T Consensus 166 ~e~Al~~l~~~~~------~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 166 SAPALGAIDDANL------TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred hHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 9999999987742 2221 11222233222 22334 7788889888854 2222221 111
Q ss_pred -----HHhcccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHH
Q 008708 244 -----SLMSFETNYKEVSKIYDQMQRAGLQ-PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRP---THKAYNILLD 314 (557)
Q Consensus 244 -----~ll~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~ 314 (557)
..+...+++++|...|+.+.+.+.+ |+. ....+...|...|++++|+.+|+++.+..... .......+..
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence 1223458899999999999987633 332 22235778999999999999999987643111 1345666777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008708 315 AFAISGMVDQARTVFKCMRRDRC-----------SPD---ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYG 380 (557)
Q Consensus 315 ~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 380 (557)
++...|++++|..+++.+..... .|+ ...+..+...+...|++++|+++++++.... |.+...+.
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~ 397 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRI 397 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 88999999999999999986531 123 2355677889999999999999999998874 77788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 381 TLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA 456 (557)
Q Consensus 381 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 456 (557)
.++..+...|++++|++.+++..+.. +.+...+...+..+.+.|++++|..+++++++ ..|+......+-...
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 99999999999999999999999853 33467777888889999999999999999998 467666554444433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-17 Score=168.12 Aligned_cols=362 Identities=10% Similarity=0.012 Sum_probs=276.8
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008708 64 LGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR 143 (557)
Q Consensus 64 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 143 (557)
.-....+...|+++.|+.+++.+....+ -+......++.+....|++++|...|+++.... |.+...+..+...+..
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p--~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAK--NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCC--CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 3344556677899999999998888763 345566777788888999999999999999875 4467889999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 144 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKA 223 (557)
Q Consensus 144 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 223 (557)
.|++++|+..++++....+. +...+..+..++...|++++|...++.+.... +.+...+..+ ..+...|++++|
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~----P~~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEV----PPRGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----CCCHHHHHHH-HHHHHcCCHHHH
Confidence 99999999999999886433 67788889999999999999999999886432 2333344344 347889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHH---HhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHH
Q 008708 224 RKLFALMAERGVQQSTVTYNS---LMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEE----ALAVFEE 296 (557)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~ 296 (557)
...++.+.+....++...+.. .+...|++++|...++......+ .+...+..+...+...|++++ |...|++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 999999887643333333322 22347999999999999998753 367788889999999999985 8999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 008708 297 MLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV 376 (557)
Q Consensus 297 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 376 (557)
+.+.. +.+...+..+...+...|++++|...+++..... +.+...+..+..++.+.|++++|...|+++...+ +.+.
T Consensus 276 Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~ 352 (656)
T PRK15174 276 ALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTS 352 (656)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccch
Confidence 98763 4467789999999999999999999999998764 4456778888999999999999999999998764 2233
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHH----HHHHHHHHhcCChhHHHHHHHHHH
Q 008708 377 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIF----TTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 377 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
..+..+..++...|++++|...|+++.+....-....| ..+-.++...+..++......++.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 44555678899999999999999999875211112233 333344444555554445555553
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.9e-17 Score=166.65 Aligned_cols=368 Identities=14% Similarity=0.061 Sum_probs=271.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 178 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 178 (557)
+......|.+.|++++|+..|++.... .|+...|..+..+|.+.|++++|++.+++.++..+. +..++..+..++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 457888999999999999999999876 578889999999999999999999999999887543 67788889999999
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------------------------
Q 008708 179 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER------------------------- 233 (557)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------- 233 (557)
.|++++|+..|..+...+ +. +......++..+........+...++.-...
T Consensus 207 lg~~~eA~~~~~~~~~~~--~~--~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 207 LGKYADALLDLTASCIID--GF--RNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred cCCHHHHHHHHHHHHHhC--CC--ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 999999999887775421 11 1111111111111110111111111100000
Q ss_pred --CCCCCH-HH-HHHH---h--cccCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008708 234 --GVQQST-VT-YNSL---M--SFETNYKEVSKIYDQMQRAG-LQP-DVVSYALLINAYGKARREEEALAVFEEMLDAGV 302 (557)
Q Consensus 234 --~~~~~~-~~-~~~l---l--~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 302 (557)
...+.. .. ...- + ...+++++|.+.|+.....+ ..| ....+..+...+...|++++|+..|++.++..
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~- 361 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD- 361 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 000000 00 0000 0 11257889999999998764 223 45678888889999999999999999998753
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 303 RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTL 382 (557)
Q Consensus 303 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 382 (557)
+.....|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|++..... +.+...+..+
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~l 439 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQL 439 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHH
Confidence 3346688889999999999999999999998764 4467889999999999999999999999999875 5677888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HH-------HHHHHH
Q 008708 383 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KA-------KNILLS 454 (557)
Q Consensus 383 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~-------~~~l~~ 454 (557)
..++.+.|++++|+..|++..+. .+.+...|..+..++...|++++|+..|++.++. .|+. .. +...+.
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHH
Confidence 99999999999999999999875 2445889999999999999999999999999873 3321 11 111222
Q ss_pred HHhhcCCHHHHHHHHHhcCCCCCCC
Q 008708 455 LAKTADERNEANELLGNFNHPNNEP 479 (557)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~~~~~~~ 479 (557)
.+...|++++|..++++....++..
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3344699999999999987665433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-14 Score=151.16 Aligned_cols=435 Identities=12% Similarity=0.111 Sum_probs=303.9
Q ss_pred hHHHHHHHHH--hhChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH
Q 008708 30 NWRRLMNQIE--EVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYG 107 (557)
Q Consensus 30 ~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 107 (557)
.+...+.... ++..|+..|+ ......|.....+...+.-+...|+.+.|+.+++...... +........+...|.
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~-qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~--n~~~~~llalA~ly~ 113 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQ-EESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM--NISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHH-HHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC--CCCHHHHHHHHHHHH
Confidence 3444444333 3346777777 3445555544344444444556688888888888877222 233444445566888
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008708 108 KQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEE 187 (557)
Q Consensus 108 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 187 (557)
..|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++
T Consensus 114 ~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 8899999999999988875 335677778888888889999999988888765 3444555445555555666666888
Q ss_pred HHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH------HHHHhcc--------cCC--
Q 008708 188 VFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVT------YNSLMSF--------ETN-- 251 (557)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~ll~~--------~~~-- 251 (557)
.++++++.. +.+...+..+..++.+.|-...|.++..+-... ..+.... ....+.. ..+
T Consensus 191 ~~ekll~~~----P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 191 ASSEAVRLA----PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHhC----CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 888888532 456677778888888888888888776553321 1111100 1111110 112
Q ss_pred -HHHHHHHHHHHHHC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 008708 252 -YKEVSKIYDQMQRA-GLQPDV-----VSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQ 324 (557)
Q Consensus 252 -~~~a~~~~~~~~~~-~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 324 (557)
.+.++.-++.+... +..|.. ....-.+-++...|+..++++.|+.+...+.+....+-..+.++|...+..++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 34455555555542 222321 22234566788999999999999999988876667788999999999999999
Q ss_pred HHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-------------CCCH-HHHHHHHHH
Q 008708 325 ARTVFKCMRRDR-----CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF-------------VPNV-ITYGTLIKG 385 (557)
Q Consensus 325 A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~-~~~~~l~~~ 385 (557)
|..+++.+.... .+++......|..+|...+++++|..+++.+.+... .||- ..+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 999999987653 123444467889999999999999999999987311 1222 234556777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHH
Q 008708 386 YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNE 464 (557)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 464 (557)
+...|++.+|++.++++.... +-|......+.+.+...|.+.+|.+.++.+.. +.|+. .+....+.++...|++++
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~ 502 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQ 502 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHH
Confidence 889999999999999998764 66899999999999999999999999987776 45654 567778888999999999
Q ss_pred HHHHHHhcCCCCCC
Q 008708 465 ANELLGNFNHPNNE 478 (557)
Q Consensus 465 a~~~~~~~~~~~~~ 478 (557)
|..+++.+....++
T Consensus 503 A~~~~~~l~~~~Pe 516 (822)
T PRK14574 503 MELLTDDVISRSPE 516 (822)
T ss_pred HHHHHHHHHhhCCC
Confidence 99999877654443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-14 Score=151.62 Aligned_cols=220 Identities=11% Similarity=-0.017 Sum_probs=168.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 250 TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVF 329 (557)
Q Consensus 250 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 329 (557)
++..+|...+....... |+......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45566777666666543 45444444455556889999999999887654 455555667777888899999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 008708 330 KCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP 409 (557)
Q Consensus 330 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 409 (557)
++..+.. +.+...+..+...+...|++++|...+++..+. .|+...+..+..++.+.|++++|...|++..+.. +.
T Consensus 566 ~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd 641 (987)
T PRK09782 566 QQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PN 641 (987)
T ss_pred HHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 9888764 333334444444555669999999999998876 4678889999999999999999999999998863 44
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCC
Q 008708 410 NQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNE 478 (557)
Q Consensus 410 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (557)
+...+..+..++...|++++|+..+++.++.. |-+...+..+..++...|++++|...+++..+..+.
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 57788888889999999999999999998842 345678889999999999999999999998755543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-15 Score=149.67 Aligned_cols=412 Identities=13% Similarity=0.121 Sum_probs=305.6
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 62 LVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAY 141 (557)
Q Consensus 62 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 141 (557)
.++-....+...|+++.|...|....+...-. ....+.-|..+|.+.|+.+.|...|+.+.... +.+..+...|...|
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLY 386 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-ccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHH
Confidence 34444455677788999988888777665211 13345578889999999999999999888763 44567777777777
Q ss_pred HhcC----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhc-cCCCCCCCHHHHHHHHHHHHH
Q 008708 142 GRGG----RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDE-EKSPLKPDQKMFHMMIYMYKK 216 (557)
Q Consensus 142 ~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 216 (557)
...+ ..+.|..++.+..+.- +.|...|..+...+-.. +.-.++.+|..+++. ...+..+.....|.+...+..
T Consensus 387 a~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 387 AHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH
Confidence 7765 5577777777776653 34777777777666544 433446666655521 112234667889999999999
Q ss_pred cCCHHHHHHHHHHHHHc---CCCCCH-------HHHHH--HhcccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 008708 217 AGGYEKARKLFALMAER---GVQQST-------VTYNS--LMSFETNYKEVSKIYDQMQRAGLQPD-VVSYALLINAYGK 283 (557)
Q Consensus 217 ~g~~~~A~~~~~~~~~~---~~~~~~-------~~~~~--ll~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~ 283 (557)
.|++++|...|...... ...++. ..||. +....++.+.|.+.|..+.+.. |. +..|.-++.....
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARD 542 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHh
Confidence 99999999999998865 122232 24554 2334688999999999999863 33 3445555544455
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc--------
Q 008708 284 ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD-RCSPDICSYTTMLSAYVNA-------- 354 (557)
Q Consensus 284 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~-------- 354 (557)
.+...+|..+++...... ..++..++.+...+.+...+..|..-|..+.+. ...+|+.+.-.|.+.|...
T Consensus 543 k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred ccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 678899999999988753 556777777888899999999999988777654 2236777777777766532
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHH
Q 008708 355 ----SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSA 430 (557)
Q Consensus 355 ----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 430 (557)
+..++|+++|.+.+... |.|...-|.++-.++..|++.+|..+|.+..+.. .-...+|-.+..+|...|++..|
T Consensus 622 ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHH
Confidence 56788999999998876 7788999999999999999999999999999864 33567899999999999999999
Q ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCCCcc
Q 008708 431 VVWYKEMESCGF-PPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGIN 482 (557)
Q Consensus 431 ~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 482 (557)
+++|+...+.-. .-+..+...|.+++.+.|.+.+|.+.+....+..+....-
T Consensus 700 IqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v 752 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSV 752 (1018)
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchH
Confidence 999998876433 3466789999999999999999999998877666654443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.3e-14 Score=148.29 Aligned_cols=200 Identities=10% Similarity=0.050 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 271 VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSA 350 (557)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 350 (557)
...|..+..++.. +++++|+..+.+.... .|+......+..++...|++++|...|+++... +|+...+..+..+
T Consensus 477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~a 551 (987)
T PRK09782 477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANT 551 (987)
T ss_pred HHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHH
Confidence 3344444444444 5666777766666654 355544444455556889999999999887654 4455556677788
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHH
Q 008708 351 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSA 430 (557)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 430 (557)
+.+.|++++|...++...+.. +++...+..+...+.+.|++++|...+++..+. .|+...|..+..++.+.|++++|
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 889999999999999988764 444444444555555679999999999999875 56788899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCC
Q 008708 431 VVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEP 479 (557)
Q Consensus 431 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 479 (557)
...+++.++.. +.+...+..+..++...|+.++|...+++..+..+..
T Consensus 629 ~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 629 VSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999843 3355677888889999999999999999987665543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-13 Score=143.72 Aligned_cols=411 Identities=12% Similarity=0.065 Sum_probs=299.0
Q ss_pred hHHHHHHHHHhhChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhc
Q 008708 30 NWRRLMNQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQ 109 (557)
Q Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 109 (557)
.|-.+....++..+|+..++... ...+.+..........+...++++.|.++++.+.+..+ -++..+..++..+...
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP--~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDP--TNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHhhc
Confidence 33344444456667888887543 33344444444444567778999999999999998874 4567778889999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 110 GDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVF 189 (557)
Q Consensus 110 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 189 (557)
++.++|++.++++... .|+...+..++..+...++..+|++.++++.+..+. +...+..+..++.+.|-...|.++.
T Consensus 150 ~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 150 GRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred CCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 9999999999999887 466666655555555567776799999999997544 7778888899999999999999887
Q ss_pred HHhHhccCCCCCCCHHHH--HHHHHHHH---------HcCC---HHHHHHHHHHHHHc-CCCCC-HHHHH-------HHh
Q 008708 190 MTLLDEEKSPLKPDQKMF--HMMIYMYK---------KAGG---YEKARKLFALMAER-GVQQS-TVTYN-------SLM 246 (557)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~--~~l~~~~~---------~~g~---~~~A~~~~~~~~~~-~~~~~-~~~~~-------~ll 246 (557)
.+-. .-+.+....+ ...+.-.. ...+ .+.|+.-++.+... +..|. ...|. .++
T Consensus 227 ~~~p----~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL 302 (822)
T PRK14574 227 KENP----NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGAL 302 (822)
T ss_pred HhCc----cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHH
Confidence 6642 1222222111 00111111 1122 34455566665542 22232 22222 123
Q ss_pred cccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCC
Q 008708 247 SFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG-----VRPTHKAYNILLDAFAISGM 321 (557)
Q Consensus 247 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~ 321 (557)
...++..++++.|+.+...+.+....+-..+..+|...+++++|..+|..+.... ..++......|..+|...++
T Consensus 303 ~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 303 LVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhccc
Confidence 3478999999999999998866566788899999999999999999999997643 12344446789999999999
Q ss_pred HHHHHHHHHHHHhCCC-----------CCC--H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 322 VDQARTVFKCMRRDRC-----------SPD--I-CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 387 (557)
Q Consensus 322 ~~~A~~~~~~~~~~~~-----------~~~--~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 387 (557)
+++|..+++.+.+... .|+ - ..+..++..+...|+..+|++.++++.... |-|......+.+.+.
T Consensus 383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~ 461 (822)
T PRK14574 383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYL 461 (822)
T ss_pred HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 9999999999987321 122 2 335566778899999999999999998875 889999999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 388 KVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS 454 (557)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 454 (557)
..|.+.+|.+.++.+.... +-+..+....+.++...|++++|..+.+.+.+ ..|+......|-.
T Consensus 462 ~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l~r 525 (822)
T PRK14574 462 ARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQELDR 525 (822)
T ss_pred hcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHHHH
Confidence 9999999999997776542 44567777888899999999999999999988 4676655444443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-13 Score=122.43 Aligned_cols=426 Identities=13% Similarity=0.119 Sum_probs=222.0
Q ss_pred chhcchhHHHHHHHHHh--hChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCC-CCCHhhHH
Q 008708 24 DEAGKKNWRRLMNQIEE--VGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWW-DFNEMDFL 100 (557)
Q Consensus 24 ~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 100 (557)
.+-.+++=|.+++.+.. ..++.-+++++..++.++....-.+.+.-.+-.+..+.-..=++|....+.+ +.+..+|
T Consensus 112 ~~~~V~~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW- 190 (625)
T KOG4422|consen 112 DPLQVETENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW- 190 (625)
T ss_pred CchhhcchhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc-
Confidence 44556777788777764 4477778887767777777666555443222222222222222333222111 1111111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 180 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 180 (557)
+.|.+.+ -+|+.. +.+..++..||.++++-...+.|.+++++......+.+..+|+.+|.+-.-
T Consensus 191 -------K~G~vAd--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~-- 254 (625)
T KOG4422|consen 191 -------KSGAVAD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY-- 254 (625)
T ss_pred -------ccccHHH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh--
Confidence 2232222 223222 225556666666666666666666666666655555666666666543221
Q ss_pred CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHhccc----CCH
Q 008708 181 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEK----ARKLFALMAERGVQQSTVTYNSLMSFE----TNY 252 (557)
Q Consensus 181 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~ 252 (557)
....++..+|+ .....||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++... +..
T Consensus 255 --~~~K~Lv~EMi---sqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 255 --SVGKKLVAEMI---SQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred --hccHHHHHHHH---HhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCch
Confidence 12244555554 23456666666666666666665544 344555666666666666666665532 112
Q ss_pred HHHHHHHHHHHH----CCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHH
Q 008708 253 KEVSKIYDQMQR----AGLQ----PDVVSYALLINAYGKARREEEALAVFEEMLDAG----VRPTH---KAYNILLDAFA 317 (557)
Q Consensus 253 ~~a~~~~~~~~~----~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~---~~~~~li~~~~ 317 (557)
+.+..++.++.. ..++ .|...|..-+..|.+..+.+.|.++..-+.... +.|+. .-|..+..+.|
T Consensus 330 k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~lic 409 (625)
T KOG4422|consen 330 KVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLIC 409 (625)
T ss_pred hhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHH
Confidence 223333333322 1122 234445666666767777777766655443210 12221 23455666666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CH----
Q 008708 318 ISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN-NL---- 392 (557)
Q Consensus 318 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~---- 392 (557)
.....+.-...|+.|.-.-+-|+..+...++++..-.|+++-.-++|..++..|...+...-.-++..+++.. +.
T Consensus 410 q~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~ 489 (625)
T KOG4422|consen 410 QMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPE 489 (625)
T ss_pred HHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChH
Confidence 6677777777777776666666666666777777777777766666666666554333333333333333322 10
Q ss_pred ----HH-----HHHH-------HHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CC---CHHHHHHH
Q 008708 393 ----EK-----MMEI-------YDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF-PP---DQKAKNIL 452 (557)
Q Consensus 393 ----~~-----a~~~-------~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p---~~~~~~~l 452 (557)
.. |..+ -.+|.+. .......+.++-.+.+.|..++|.+++..+.+.+- .| ......-+
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El 567 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAEL 567 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHH
Confidence 00 1111 1122222 23445566666667777777777777777644321 12 22233344
Q ss_pred HHHHhhcCCHHHHHHHHHhcC
Q 008708 453 LSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 453 ~~~~~~~g~~~~a~~~~~~~~ 473 (557)
.....+.+....|...++-+.
T Consensus 568 ~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 568 MDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred HHHHHhcCCHHHHHHHHHHHH
Confidence 555666667777777766654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.6e-12 Score=114.98 Aligned_cols=463 Identities=12% Similarity=0.109 Sum_probs=331.7
Q ss_pred CCCchHHHHHh-hhhhhccchh--chhcchhHHHHHH---HHHhhChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccch
Q 008708 3 MLAPRKFMQKR-RKVEVFKDAA--DEAGKKNWRRLMN---QIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKW 76 (557)
Q Consensus 3 ~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 76 (557)
|.||...-+++ |+.+-|+|.+ +..++-.|-.-.. .......|.+++.+. .......-+..+.....--+.+..
T Consensus 45 ItD~~EL~eYq~RkRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERA-Ldvd~r~itLWlkYae~Emknk~v 123 (677)
T KOG1915|consen 45 ITDSEELSEYQLRKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERA-LDVDYRNITLWLKYAEFEMKNKQV 123 (677)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HhcccccchHHHHHHHHHHhhhhH
Confidence 66777777776 8888998773 3334444443222 112233567777743 222222223333333322333456
Q ss_pred HHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008708 77 NVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRR 156 (557)
Q Consensus 77 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 156 (557)
..|.-+++.+...-+ --...|.-.+.+=-..|++..|.++|++..+. .|+..+|++.|..=.+-..++.|..+|++
T Consensus 124 NhARNv~dRAvt~lP--RVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYer 199 (677)
T KOG1915|consen 124 NHARNVWDRAVTILP--RVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYER 199 (677)
T ss_pred hHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 678888888877642 12345566666667789999999999999886 79999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008708 157 MQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQ 236 (557)
Q Consensus 157 m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 236 (557)
..- +.|+..+|....+.-.+.|+...|..+|..+++.-. .-..+...+.+....=..+..++.|.-+|+-.++.-++
T Consensus 200 fV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~-~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk 276 (677)
T KOG1915|consen 200 FVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG-DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK 276 (677)
T ss_pred Hhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 876 458999999999988999999999999999986311 11122345666666666788899999999988875332
Q ss_pred CC-HHHHHHHhcc---cCCHHHHHH--------HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008708 237 QS-TVTYNSLMSF---ETNYKEVSK--------IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRP 304 (557)
Q Consensus 237 ~~-~~~~~~ll~~---~~~~~~a~~--------~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 304 (557)
.. ...|...... .|+...... -|+.+.+.+ +.|-.+|-..+..-...|+.+...++|++.+.. ++|
T Consensus 277 ~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp 354 (677)
T KOG1915|consen 277 GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPP 354 (677)
T ss_pred ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCc
Confidence 22 2344444443 555433332 244555553 347778888888888899999999999999875 455
Q ss_pred CHH-------HHHHHHHH---HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHHhC
Q 008708 305 THK-------AYNILLDA---FAISGMVDQARTVFKCMRRDRCSPDICSYTTML----SAYVNASDMEGAEKFFRRLKQD 370 (557)
Q Consensus 305 ~~~-------~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~ 370 (557)
-.. .|.-+-.+ -....+.+.+.++++..++ -++....||.-+= ....++.++..|.+++....
T Consensus 355 ~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI-- 431 (677)
T KOG1915|consen 355 ASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI-- 431 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--
Confidence 321 22222222 2357899999999999887 4455556655443 34457889999999999776
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHH
Q 008708 371 GFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAK 449 (557)
Q Consensus 371 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~ 449 (557)
|..|-..+|...|..-.+.++++....+|++.++.+ +-+..+|......=...|+.+.|..+|.-+++.....-+ ..|
T Consensus 432 G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 432 GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 568999999999999999999999999999999875 557788998888888999999999999999875422222 467
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhcCCCCCCC
Q 008708 450 NILLSLAKTADERNEANELLGNFNHPNNEP 479 (557)
Q Consensus 450 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 479 (557)
.+.+..-...|.++.|+.+++++.+.....
T Consensus 511 kaYIdFEi~~~E~ekaR~LYerlL~rt~h~ 540 (677)
T KOG1915|consen 511 KAYIDFEIEEGEFEKARALYERLLDRTQHV 540 (677)
T ss_pred HHhhhhhhhcchHHHHHHHHHHHHHhcccc
Confidence 777777788999999999999988655543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-12 Score=127.67 Aligned_cols=358 Identities=13% Similarity=0.194 Sum_probs=215.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 106 YGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEA 185 (557)
Q Consensus 106 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A 185 (557)
+...|++++|.+++.++.+.. +.+...|..|...|-..|+.++++..+-......+. |...|..+.....+.|++..|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHH
Confidence 333466666666666666553 335566666666666666666666655444333332 445666666666666666666
Q ss_pred HHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc-------cCCHHHHHHH
Q 008708 186 EEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF-------ETNYKEVSKI 258 (557)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-------~~~~~~a~~~ 258 (557)
.-.|.++++.. +++...+-.-...|-+.|+...|...|.++.....+.+..-+..++.. .++-+.|.+.
T Consensus 227 ~~cy~rAI~~~----p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 227 RYCYSRAIQAN----PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHhcC----CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66666666422 344444444555666666666666666666655332222222222211 2223555555
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---------------------------CCHHHHH
Q 008708 259 YDQMQRA-GLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR---------------------------PTHKAYN 310 (557)
Q Consensus 259 ~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---------------------------~~~~~~~ 310 (557)
++..... +-..+...++.++..|.+...++.|......+...... ++..+ -
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 5554442 12234455677777777777777777777666552111 22222 1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 311 ILLDAFAISGMVDQARTVFKCMRRDR--CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 388 (557)
Q Consensus 311 ~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 388 (557)
.++-++......+....+........ ..-+...|.-+..+|...|++.+|+.+|..+......-+...|..+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 22223333333333333344444443 3334567788888888888888998888888876545567788888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHhhcC
Q 008708 389 VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME--------SCGFPPDQKAKNILLSLAKTAD 460 (557)
Q Consensus 389 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~l~~~~~~~g 460 (557)
.|.+++|.+.|++.+... +.+...-..|...+.+.|+.++|.+.+..+. ..+..|+..........+...|
T Consensus 462 l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 888899988888888652 3345666677778888888888888888753 2334555566666667778888
Q ss_pred CHHHHHHHHHh
Q 008708 461 ERNEANELLGN 471 (557)
Q Consensus 461 ~~~~a~~~~~~ 471 (557)
+.++-......
T Consensus 541 k~E~fi~t~~~ 551 (895)
T KOG2076|consen 541 KREEFINTAST 551 (895)
T ss_pred hHHHHHHHHHH
Confidence 87775544433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-12 Score=127.20 Aligned_cols=429 Identities=13% Similarity=0.102 Sum_probs=266.8
Q ss_pred HHHHHHhhChHHHHHHHhhhcCCCCChHHH--HHHHH-HhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC
Q 008708 34 LMNQIEEVGSAVAVLRSERTRGQPLPKDLV--LGTLV-RLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQG 110 (557)
Q Consensus 34 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 110 (557)
.+..+.+...|+..|.+ ..+..|..-+.. ++.+. .+.....+..+++.+..+-...+ .+|...+.|...|.-.|
T Consensus 208 Cf~kl~~~~~a~~a~~r-alqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 208 CFWKLGMSEKALLAFER-ALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN--ENPVALNHLANHFYFKK 284 (1018)
T ss_pred HHHhccchhhHHHHHHH-HHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcc
Confidence 34455666777777764 333333222221 22221 23344456677777776666553 56677788888888888
Q ss_pred ChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 111 DFNKAEKVLSFMNKKGYA--PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEV 188 (557)
Q Consensus 111 ~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 188 (557)
++..+..+...+...... --..+|-.+.++|-..|++++|...|.+..+....--...+.-+...+...|+++.+...
T Consensus 285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~ 364 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFC 364 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHH
Confidence 888888888777664211 113457777888888888888888887766643322234445567778888888888888
Q ss_pred HHHhHhccCCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHhcc--cCCHHHHHHHHH--
Q 008708 189 FMTLLDEEKSPLKPDQKMFHMMIYMYKKAG----GYEKARKLFALMAERGVQQSTVTYNSLMSF--ETNYKEVSKIYD-- 260 (557)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~a~~~~~-- 260 (557)
|+.+.+. .+.+..+...|...|...+ ..+.|..++.+..+.- ..|...|-.+-.. .++....+.+|.
T Consensus 365 fEkv~k~----~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A 439 (1018)
T KOG2002|consen 365 FEKVLKQ----LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNA 439 (1018)
T ss_pred HHHHHHh----CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 8888753 3455667777777776664 5566777777766643 2233344333222 233333344333
Q ss_pred --HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHHcCCHH------
Q 008708 261 --QMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA---GVRPTH------KAYNILLDAFAISGMVD------ 323 (557)
Q Consensus 261 --~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~------ 323 (557)
.+...+..+.+...|.+...+...|++++|...|...... ...++. .+--.+...+-..++++
T Consensus 440 ~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Y 519 (1018)
T KOG2002|consen 440 LDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMY 519 (1018)
T ss_pred HHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3334444566667777777777777777777777766543 111222 12222333333334444
Q ss_pred ----------------------------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCC
Q 008708 324 ----------------------------QARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD-GFVP 374 (557)
Q Consensus 324 ----------------------------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p 374 (557)
+|...++...... ..++..+..+...+.+...+..|.+-|....+. ...+
T Consensus 520 k~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~ 598 (1018)
T KOG2002|consen 520 KSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKT 598 (1018)
T ss_pred HHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCC
Confidence 4444444444322 234444555555566666666666655554432 1236
Q ss_pred CHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 008708 375 NVITYGTLIKGYAK------------VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 442 (557)
Q Consensus 375 ~~~~~~~l~~~~~~------------~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 442 (557)
|..+.-.|++.|.. .+..++|+++|.+.++.. +-|...-+.+.-.++..|++.+|..+|.+..+..
T Consensus 599 D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~- 676 (1018)
T KOG2002|consen 599 DAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT- 676 (1018)
T ss_pred chhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-
Confidence 77777777776653 345788999999998764 4567777888888999999999999999998854
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 443 PPDQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 443 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
.-...+|-.+...|...|++..|.++++.+.
T Consensus 677 ~~~~dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 677 SDFEDVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred hhCCceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788899999999999999999998866
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-13 Score=124.59 Aligned_cols=206 Identities=15% Similarity=0.185 Sum_probs=146.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 249 ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTV 328 (557)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 328 (557)
.|+++.|.+.|++........... .-.+.-.+-..|++++|++.|-++... +..+..+.-.+...|....+...|+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ea-lfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEA-LFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHH-HHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 356777777777776653322222 223344566778888888887776432 233556667777778778888888887
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 008708 329 FKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIK 408 (557)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 408 (557)
+.+... -++.|+...+-|...|-+.|+-..|.+.+-+--.- ++-+..+...|...|....-+++++.+|++..- +.
T Consensus 581 ~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 581 LMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 766653 34567788888888888888888888776654433 466778888888888888888888888888764 57
Q ss_pred cCHHHHHHHHHH-HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 008708 409 PNQTIFTTIMDA-YGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADE 461 (557)
Q Consensus 409 p~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 461 (557)
|+..-|..++.. +.+.|+++.|..++++...+ ++.|...+..|++.|...|-
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 888888877754 45788888888888888764 67778888888888877763
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-11 Score=121.44 Aligned_cols=363 Identities=15% Similarity=0.125 Sum_probs=273.5
Q ss_pred HHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008708 68 VRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRY 147 (557)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 147 (557)
..+...|+.+.|.+++..++++.+ .+...|..|..+|-+.|+.+++...+-..-... +.|...|-.+.....+.|.+
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 344555999999999999999974 678899999999999999999999887776664 45789999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHH----HHHHHHHHHHHcCCHHHH
Q 008708 148 KNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQK----MFHMMIYMYKKAGGYEKA 223 (557)
Q Consensus 148 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A 223 (557)
+.|.-.|.+.++..+. +...+---...|-+.|+...|..-|.++.... .+.|.. ..-.+++.+...++-+.|
T Consensus 224 ~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~---p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLD---PPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred HHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhC---CchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999987554 44455556678999999999999999998532 122222 223356677788888999
Q ss_pred HHHHHHHHHcC----CCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCC---------------------------CCHH
Q 008708 224 RKLFALMAERG----VQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQ---------------------------PDVV 272 (557)
Q Consensus 224 ~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~---------------------------~~~~ 272 (557)
.+.++.....+ --|+..++..++-....++.+......+...... ++..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 99998887632 2345556666666667777777777666552111 2222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 273 SYALLINAYGKARREEEALAVFEEMLDAGVR--PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSA 350 (557)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 350 (557)
+ .-++-++.+.+..+....+...+.+..+. -+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+
T Consensus 380 v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 V-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred h-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 2 12223344455555555555555555533 34567899999999999999999999999987666678899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HCCCCcCHHHHHHHHHHHH
Q 008708 351 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR--------VNGIKPNQTIFTTIMDAYG 422 (557)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~--------~~~~~p~~~~~~~l~~~~~ 422 (557)
|...|.+++|.+.|+..+... |.+...--.|...+.+.|+.++|.+.+..+. ..+..|+..........+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 999999999999999999874 5566667778888999999999999999864 2345566666667777888
Q ss_pred hcCChhHHHHHHHHHHh
Q 008708 423 KNKDFDSAVVWYKEMES 439 (557)
Q Consensus 423 ~~g~~~~A~~~~~~m~~ 439 (557)
..|+.++-+.....|+.
T Consensus 538 ~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVD 554 (895)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 89998886666666654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-11 Score=111.66 Aligned_cols=364 Identities=14% Similarity=0.130 Sum_probs=261.1
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHH
Q 008708 93 DFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSAL--TYQ 170 (557)
Q Consensus 93 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~ 170 (557)
+.++..+....-.+.+.|....|...|-..... .|-.=.+|..|..... +. +........ ...|.. .=-
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~~----e~~~~l~~~-l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---DI----EILSILVVG-LPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---hH----HHHHHHHhc-CcccchHHHHH
Confidence 445566666677777888889999988887764 1334445544443332 22 222222221 221211 112
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHhcc
Q 008708 171 IILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGV--QQSTVTYNSLMSF 248 (557)
Q Consensus 171 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~ 248 (557)
.+..++....+.+++.+-..... ..|++-+...-+....+.....++++|+.+|+++.+..+ -.|..+|+.++-.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~---~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLS---SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 34456667778888888777776 345555555555566667778999999999999988632 1256677776655
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 249 ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTV 328 (557)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 328 (557)
..+-.+..-+-...... -+--+.|...+.+.|.-.++.++|...|+..++.+ +.....|+.+..-|....+...|+.-
T Consensus 309 ~~~~skLs~LA~~v~~i-dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVSNI-DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HhhhHHHHHHHHHHHHh-ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 44322222222222221 12234677888899999999999999999999865 34566888889999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 008708 329 FKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIK 408 (557)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 408 (557)
++...+-. +.|-..|-.|.++|.-.+...-|+-+|++..... |.|...|.+|+.+|.+.++.++|++.|.+....| .
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 99998764 6688999999999999999999999999999875 7789999999999999999999999999999875 3
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 409 PNQTIFTTIMDAYGKNKDFDSAVVWYKEMES----CGFPPDQ--KAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 409 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
.+...+..+..+|-+.++.++|.+.+++.++ .|...+. ....-|...+.+.+++++|..+.....
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 4668899999999999999999999988765 3322221 223335567788899999988766554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7e-12 Score=114.84 Aligned_cols=423 Identities=11% Similarity=0.086 Sum_probs=283.7
Q ss_pred hChHHHHHHHhhhcCCCCChHHHHHHHHH--hhhccchHHHHHHHHHHHhcCCC-CC--CHhhHHHHHHHHHhcCChhHH
Q 008708 41 VGSAVAVLRSERTRGQPLPKDLVLGTLVR--LKQLKKWNVVSEVLEWLRIQSWW-DF--NEMDFLMLITAYGKQGDFNKA 115 (557)
Q Consensus 41 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A 115 (557)
..+|+..++ .+.+....|+.-.+..-.. .-+.+.+.+|+++++.+..+-+- +. .....+.+.-.+.+.|+++.|
T Consensus 217 ~~ealntye-iivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~da 295 (840)
T KOG2003|consen 217 TAEALNTYE-IIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDA 295 (840)
T ss_pred HHHHhhhhh-hhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhh
Confidence 446666665 3455566665544322211 22345688899999888776431 11 123456667778899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC------------CCCHHHHHHHHH-----HHHH
Q 008708 116 EKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP------------RPSALTYQIILK-----LFVE 178 (557)
Q Consensus 116 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------~~~~~~~~~ll~-----~~~~ 178 (557)
+.-|+...+. .|+..+-..|+-++..-|+-++..+.|.+|+..-. .|+....+..+. -+-+
T Consensus 296 insfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek 373 (840)
T KOG2003|consen 296 INSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEK 373 (840)
T ss_pred HhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHH
Confidence 9999998876 48877666666677778999999999999976422 233333332221 1111
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHH-----H--------HH--------HHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008708 179 ANKFKEAEEVFMTLLDEEKSPLKPDQK-----M--------FH--------MMIYMYKKAGGYEKARKLFALMAERGVQQ 237 (557)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~-----~--------~~--------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 237 (557)
. +-..|++.+-...+.-..-+.|+-. + +. .-...|.+.|+++.|+++++-..+..-+.
T Consensus 374 ~-~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~ 452 (840)
T KOG2003|consen 374 E-NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKT 452 (840)
T ss_pred h-hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchh
Confidence 1 1122333322222111222333321 1 11 11345789999999999998887653332
Q ss_pred CHHHHHHH-----hcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008708 238 STVTYNSL-----MSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNIL 312 (557)
Q Consensus 238 ~~~~~~~l-----l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 312 (557)
....-+.+ +.+..++.+|..+-+...... .-+......-.+.....|++++|.+.|++.+.....-. .....+
T Consensus 453 ~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~-ealfni 530 (840)
T KOG2003|consen 453 ASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT-EALFNI 530 (840)
T ss_pred hHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH-HHHHHh
Confidence 22222222 223456778888777766542 22444444444555678999999999999986532222 222233
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 313 LDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNL 392 (557)
Q Consensus 313 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 392 (557)
.-.+-..|++++|+..|-++..- +..+......+.+.|....+...|++++.+.... ++.|+....-|.+.|-+.|+-
T Consensus 531 glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdk 608 (840)
T KOG2003|consen 531 GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDK 608 (840)
T ss_pred cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccch
Confidence 44577889999999999876532 1336778888899999999999999999887765 578899999999999999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH-HHhhcCCHHHHHHHHHh
Q 008708 393 EKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS-LAKTADERNEANELLGN 471 (557)
Q Consensus 393 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~ 471 (557)
..|.+.+-.--.. ++-+..+...|..-|....-+++|+.+|++..- +.|+..-|..++. ++++.|++..|..+++.
T Consensus 609 sqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 609 SQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred hhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9999887665543 567888988899889999999999999998865 7899999987774 56789999999999987
Q ss_pred cCC
Q 008708 472 FNH 474 (557)
Q Consensus 472 ~~~ 474 (557)
..+
T Consensus 686 ~hr 688 (840)
T KOG2003|consen 686 IHR 688 (840)
T ss_pred HHH
Confidence 653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-11 Score=120.98 Aligned_cols=292 Identities=13% Similarity=0.120 Sum_probs=195.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008708 109 QGDFNKAEKVLSFMNKKGYAPSVVSHTAL-MEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEE 187 (557)
Q Consensus 109 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 187 (557)
.|++++|.+.+....+.. +++..+..+ ..+..+.|+++.|.+.+.++.+..+.+...........+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 699999999888876652 233333333 45557899999999999999875333222232344678889999999999
Q ss_pred HHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCC
Q 008708 188 VFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGL 267 (557)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~ 267 (557)
.++.+.+. .+.+......+...|.+.|++++|..++..+.+.+..++. ....+
T Consensus 175 ~l~~~~~~----~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l---------------------- 227 (398)
T PRK10747 175 GVDKLLEV----APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAML---------------------- 227 (398)
T ss_pred HHHHHHhc----CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHH----------------------
Confidence 99999753 2556788889999999999999999999999887543211 11000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 268 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 347 (557)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 347 (557)
-..+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|..++++..+. +++... .+
T Consensus 228 --~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~ 300 (398)
T PRK10747 228 --EQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VL 300 (398)
T ss_pred --HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HH
Confidence 0012222333333334445555555555332 2446667777777777777777777777777663 344421 12
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDF 427 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 427 (557)
+.+....++.+++.+..+...+.. |-|...+..+...|.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCH
Confidence 333345577777777777777653 556666777777777778888888888777764 57777777777777777888
Q ss_pred hHHHHHHHHHHh
Q 008708 428 DSAVVWYKEMES 439 (557)
Q Consensus 428 ~~A~~~~~~m~~ 439 (557)
++|.+++++...
T Consensus 378 ~~A~~~~~~~l~ 389 (398)
T PRK10747 378 EEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHh
Confidence 777777776654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-13 Score=131.22 Aligned_cols=287 Identities=14% Similarity=0.128 Sum_probs=224.6
Q ss_pred CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHhcccCCHHHHHHH
Q 008708 181 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERG--VQQSTVTYNSLMSFETNYKEVSKI 258 (557)
Q Consensus 181 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~a~~~ 258 (557)
+..+|...|..+.+ ...-+..+...+..+|...+++++|.++|+.+.+.. ...+...|.+.+....+.-+.--+
T Consensus 334 ~~~~A~~~~~klp~----h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPS----HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHH----hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence 56788888888532 223334677778889999999999999999887653 123566777777765554443344
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008708 259 YDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRP-THKAYNILLDAFAISGMVDQARTVFKCMRRDRC 337 (557)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 337 (557)
-+.+.... +-.+.+|..+.++|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+...
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 44444443 336789999999999999999999999999875 44 67889988888999999999999999888542
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 008708 338 SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTI 417 (557)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 417 (557)
+.+-..|.-+...|.+.++++.|+-.|+++.+.+ |-+.+....++..+-+.|+.++|+++++++...+. -|+..--..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHH
Confidence 2233456667789999999999999999999876 66888888999999999999999999999997652 344444455
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCC
Q 008708 418 MDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFNHPNNEP 479 (557)
Q Consensus 418 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 479 (557)
+..+...+++++|+..++++.+ +.|+. ..+..+...|.+.|+.+.|..-+--+.+.++..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 6667788999999999999998 66766 567888899999999999999888877666644
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-12 Score=115.94 Aligned_cols=338 Identities=15% Similarity=0.223 Sum_probs=243.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCChH-HHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYG--RGGRYK-NAEAIFRRMQSSGPRPSALTYQIILK 174 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~ll~ 174 (557)
+=+.|+.+ ...|.+..+.-+|+.|.+.|.+.+...-..|++.-+ ...++- .-++.|-.|.+.|-. +..+|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW----- 190 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW----- 190 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc-----
Confidence 33445544 446777888888888888877767666666554322 222222 223444455444322 22232
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHH
Q 008708 175 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKE 254 (557)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 254 (557)
+.|.+ |. ++-+. .+.+..++..+|.+.|+--..+.|.++|++......+.+..+||.++.... +..
T Consensus 191 ---K~G~v--Ad-L~~E~-------~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S-~~~ 256 (625)
T KOG4422|consen 191 ---KSGAV--AD-LLFET-------LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS-YSV 256 (625)
T ss_pred ---ccccH--HH-HHHhh-------cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH-hhc
Confidence 23333 22 33232 255678999999999999999999999999998888899999999987521 111
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH-HHHHHH
Q 008708 255 VSKIYDQMQRAGLQPDVVSYALLINAYGKARREEE----ALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVD-QARTVF 329 (557)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~ 329 (557)
..++..+|......||..|+|+++++..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++.. .|..++
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 26788999999999999999999999999998864 5677888999999999999999999998888764 455555
Q ss_pred HHHHhC----CC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCH---HHHHHHHHHHHHcCCHHH
Q 008708 330 KCMRRD----RC----SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD----GFVPNV---ITYGTLIKGYAKVNNLEK 394 (557)
Q Consensus 330 ~~~~~~----~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~---~~~~~l~~~~~~~g~~~~ 394 (557)
.++... .. +.+...|...+..|.+..+.+.|.++..-+... -+.|+. .-|..+..+.|+....+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555432 22 235566788889999999999998887765432 133442 346778888899999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 395 MMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA 456 (557)
Q Consensus 395 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 456 (557)
....|+.|.-.-.-|+..+...++++..-.|.++-.-+++.++...|..-+......++..+
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L 478 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLL 478 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 99999999877677899999999999999999999999999888776444444333333333
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-11 Score=121.44 Aligned_cols=283 Identities=13% Similarity=0.121 Sum_probs=212.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH--HHHHHHHHcCCHH
Q 008708 144 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH--MMIYMYKKAGGYE 221 (557)
Q Consensus 144 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~ 221 (557)
.|+++.|.+.+....+....| ...|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~-----~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL-----ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHCCCHH
Confidence 688888887777654432221 223333345557888888888888888642 34433222 3366778888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008708 222 KARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG 301 (557)
Q Consensus 222 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 301 (557)
.|...++.+.+.. +-+......+...|.+.|++++|..++..+.+.+
T Consensus 171 ~Al~~l~~~~~~~---------------------------------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 171 AARHGVDKLLEVA---------------------------------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred HHHHHHHHHHhcC---------------------------------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 8888888777652 2356778888999999999999999999999876
Q ss_pred CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008708 302 VRPTH-------KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVP 374 (557)
Q Consensus 302 ~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 374 (557)
..++. .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. +|
T Consensus 218 ~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~ 294 (398)
T PRK10747 218 VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QY 294 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 54322 13334444444555667777777776543 2457888899999999999999999999999874 56
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 375 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS 454 (557)
Q Consensus 375 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 454 (557)
+.... ++.+....++.+++.+..+...+.. +-|+..+.++...|.+.|++++|.+.|+.+.+ ..|+...+..+..
T Consensus 295 ~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~ 369 (398)
T PRK10747 295 DERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLAD 369 (398)
T ss_pred CHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHH
Confidence 66432 2334445699999999999998763 55677889999999999999999999999998 5799999999999
Q ss_pred HHhhcCCHHHHHHHHHhcC
Q 008708 455 LAKTADERNEANELLGNFN 473 (557)
Q Consensus 455 ~~~~~g~~~~a~~~~~~~~ 473 (557)
++.+.|+.++|..++++..
T Consensus 370 ~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 370 ALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 9999999999999998764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.1e-10 Score=107.01 Aligned_cols=367 Identities=12% Similarity=0.101 Sum_probs=192.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 180 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 180 (557)
.-.+.|.+.+-++-|+.+|...++- ++-+...|......--..|..+....+|++....- +-....|......+-..|
T Consensus 521 ~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 521 DDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAG 598 (913)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcC
Confidence 3344444444444445555444443 12234444444444444455555555555554432 223334444444445555
Q ss_pred CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHhcccCCHHHHHHHH
Q 008708 181 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVT-YNSLMSFETNYKEVSKIY 259 (557)
Q Consensus 181 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~a~~~~ 259 (557)
+...|..++..+.+. .+.+..+|.+-+..-....+++.|..+|.+....+..+-+.+ +..+....++.++|.+++
T Consensus 599 dv~~ar~il~~af~~----~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 599 DVPAARVILDQAFEA----NPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred CcHHHHHHHHHHHHh----CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 555555555555431 122444555555555555555555555555544322222111 111223345555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008708 260 DQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP 339 (557)
Q Consensus 260 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 339 (557)
++..+.- +--...|..+...+-+.++.+.|...|..=.+. ++..+..|..|...--+.|.+-+|..++++..-.+ +.
T Consensus 675 Ee~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk 751 (913)
T KOG0495|consen 675 EEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PK 751 (913)
T ss_pred HHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CC
Confidence 5555431 112234445555555555555555555443322 22233344444444455555555555555554433 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
+...|-..|..-.+.|+.+.|..++.+.++. .+.+...|..-|....+.++-......+++ +..|+.....+..
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~ 825 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAK 825 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHH
Confidence 4555555555555555555555555555543 244444555545444444443332222222 2446666777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCCCcccc
Q 008708 420 AYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGL 484 (557)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 484 (557)
.+....+++.|...|.+.++. .|| ..+|..+...+.++|.-+.-.+++.++....+..+..+.
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~ 889 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQ 889 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHH
Confidence 888888899999999999874 454 478888899999999988888999888766665554443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.2e-12 Score=122.48 Aligned_cols=292 Identities=13% Similarity=0.114 Sum_probs=141.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 108 KQGDFNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAE 186 (557)
Q Consensus 108 ~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 186 (557)
..|+++.|.+.+.+..+.. |+ ...+-....++.+.|+++.|.+.+.+..+..+.+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4577777777777666542 33 23333445666666777777777777665433332233333456666777777777
Q ss_pred HHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCC
Q 008708 187 EVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAG 266 (557)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~ 266 (557)
..++.+.+. .|.+..++..+...+...|++++|.+.+..+.+.++.+.. .+..+..
T Consensus 174 ~~l~~l~~~----~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~------------------- 229 (409)
T TIGR00540 174 HGVDKLLEM----APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ------------------- 229 (409)
T ss_pred HHHHHHHHh----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-------------------
Confidence 777777642 1345556667777777777777777777777665422111 1100000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008708 267 LQPDVVSYALLINAYGKARREEEALAVFEEMLDAG---VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICS 343 (557)
Q Consensus 267 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 343 (557)
..+.. ....+..+++.+.+..+.+.. .+.+...+..+...+...|+.++|..++++..+.. |+...
T Consensus 230 -----~a~~~----~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~ 298 (409)
T TIGR00540 230 -----KAEIG----LLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRA 298 (409)
T ss_pred -----HHHHH----HHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCccc
Confidence 00000 011111111222222222211 01244455555555555555555555555555432 11110
Q ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 008708 344 ---YTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV--ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIM 418 (557)
Q Consensus 344 ---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 418 (557)
...........++.+.+.+.++...+.. +-|. ....++...|.+.|++++|.+.|+........|+...+..+.
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La 377 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAA 377 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence 0111111122344455555555544432 2233 344455555555555555555555322222345555555555
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 008708 419 DAYGKNKDFDSAVVWYKEM 437 (557)
Q Consensus 419 ~~~~~~g~~~~A~~~~~~m 437 (557)
..+.+.|+.++|.+++++.
T Consensus 378 ~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-15 Score=138.44 Aligned_cols=261 Identities=16% Similarity=0.211 Sum_probs=63.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKG-YAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA 179 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 179 (557)
.+...+.+.|++++|.++++...... .+.+...|..+...+...++++.|.+.++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 33455555555555555554332221 1223334444444444455555555555555544322 33344444443 455
Q ss_pred CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHH
Q 008708 180 NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIY 259 (557)
Q Consensus 180 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~ 259 (557)
+++++|.+++....+. .++...+..++..+...++++++..+++.+....
T Consensus 91 ~~~~~A~~~~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------------------------- 140 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER-----DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELP------------------------- 140 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T-------------------------
T ss_pred cccccccccccccccc-----ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc-------------------------
Confidence 5555555555444321 1233334444444555555555555554433210
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008708 260 DQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP 339 (557)
Q Consensus 260 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 339 (557)
..+.+...|..+...+.+.|+.++|+..+++.++.. +.+......++..+...|+.+++..+++...+.. +.
T Consensus 141 ------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~ 212 (280)
T PF13429_consen 141 ------AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PD 212 (280)
T ss_dssp ---------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HT
T ss_pred ------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cC
Confidence 012344445555555555555555555555555432 2234445555555555555555555554444332 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKM 402 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (557)
++..+..+..+|...|+.++|+..|++..... +.|......+.+++...|+.++|.++.+++
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 33344444555555555555555555544432 334444445555555555555555544443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-15 Score=138.48 Aligned_cols=218 Identities=14% Similarity=0.149 Sum_probs=110.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 249 ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTV 328 (557)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 328 (557)
.++++.|...++.+...+.. +...+..++.. ...+++++|.+++....+. .+++..+...+..+...++++++..+
T Consensus 57 ~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~ 132 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEEL 132 (280)
T ss_dssp -----------------------------------------------------------------H-HHHTT-HHHHHHH
T ss_pred cccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHH
Confidence 34455555555555444322 44556666666 6888999999988877654 35666777888888899999999999
Q ss_pred HHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 008708 329 FKCMRRDR-CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI 407 (557)
Q Consensus 329 ~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 407 (557)
++.+.... .+.+...|..+...+.+.|+.++|+..+++..+.. |.|......++..+...|+.+++.+++....+..
T Consensus 133 l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~- 210 (280)
T PF13429_consen 133 LEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA- 210 (280)
T ss_dssp HHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-
Confidence 99876542 34577788888889999999999999999998874 4467788889999999999999888888877653
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 408 KPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 408 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
+.|+..+..+..+|...|++++|+.++++..+.. +.|+.....+..++...|+.++|.++.+++.
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 5566778888999999999999999999988743 4577788888899999999999998887764
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.2e-12 Score=123.22 Aligned_cols=288 Identities=13% Similarity=0.072 Sum_probs=202.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCH--HHHHHHHHHHHHcCCH
Q 008708 143 RGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQ--KMFHMMIYMYKKAGGY 220 (557)
Q Consensus 143 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~ 220 (557)
..|+++.|.+.+.+..+..+. ....+.....++...|+.+.|.+++.++.+. .|+. .+.-.....+...|++
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-----~p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAEL-----AGNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCcCchHHHHHHHHHHHHCCCH
Confidence 468888888888777665332 2334445566777788888888888887642 2332 2334457777778888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008708 221 EKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA 300 (557)
Q Consensus 221 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 300 (557)
+.|...++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.
T Consensus 170 ~~Al~~l~~l~~~~---------------------------------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 170 HAARHGVDKLLEMA---------------------------------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHHHHhC---------------------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 88888887777652 225667888999999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 008708 301 GVRPTHKAYNILLDAF---AISGMVDQARTVFKCMRRDRC---SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVP 374 (557)
Q Consensus 301 ~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 374 (557)
+..+.......-..++ ...+..+++...+..+..... +.++..+..++..+...|+.++|.+++++..+.. |
T Consensus 217 ~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--p 294 (409)
T TIGR00540 217 GLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--G 294 (409)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--C
Confidence 6543332211111222 222333333345554444321 2378889999999999999999999999999864 3
Q ss_pred CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 008708 375 NVIT---YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ--TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAK 449 (557)
Q Consensus 375 ~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 449 (557)
|... ...........++.+.+.+.+++..+.. +-|+ ....++...|.+.|++++|.+.|+........|++..+
T Consensus 295 d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~ 373 (409)
T TIGR00540 295 DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL 373 (409)
T ss_pred CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH
Confidence 3331 1122222334578889999998888752 3345 67779999999999999999999954433368999989
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhc
Q 008708 450 NILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 450 ~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
..+...+.+.|+.++|.+++++.
T Consensus 374 ~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 374 AMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999875
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8e-12 Score=109.82 Aligned_cols=291 Identities=16% Similarity=0.178 Sum_probs=180.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 144 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKA 223 (557)
Q Consensus 144 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 223 (557)
..+.++|.++|-+|.+..+. +..+-.+|.+.|.+.|..+.|+++++.+++.+.........+...|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 45667777777777664322 34444566677777777777777777776422111111123344566667777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008708 224 RKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR 303 (557)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 303 (557)
+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+-.
T Consensus 127 E~~f~~L~de~---------------------------------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 127 EDIFNQLVDEG---------------------------------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred HHHHHHHhcch---------------------------------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 77776665531 112334556777777778888888887777766544
Q ss_pred CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008708 304 PTH----KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITY 379 (557)
Q Consensus 304 ~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 379 (557)
+.. ..|.-|...+....+++.|..++.+..+.. +..+..--.+...+...|+++.|.+.++...+.+..--..+.
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 332 245555566666677888888888777654 234444555667778888888888888888877544445667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh--
Q 008708 380 GTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK-- 457 (557)
Q Consensus 380 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-- 457 (557)
..|..+|.+.|+.++....+.++.+.. +....-..+...-....-.+.|..++.+-+. -.|+...+..++..-.
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhcc
Confidence 788888888888888888888877653 3333334444433333334555554444443 2688888887776543
Q ss_pred -hcCCHHHHHHHHHhcC
Q 008708 458 -TADERNEANELLGNFN 473 (557)
Q Consensus 458 -~~g~~~~a~~~~~~~~ 473 (557)
..|...+...++++|.
T Consensus 329 aeeg~~k~sL~~lr~mv 345 (389)
T COG2956 329 AEEGRAKESLDLLRDMV 345 (389)
T ss_pred ccccchhhhHHHHHHHH
Confidence 3445666666666654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.3e-10 Score=107.98 Aligned_cols=385 Identities=13% Similarity=0.077 Sum_probs=186.7
Q ss_pred ccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCChH
Q 008708 73 LKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFM----NKKGYAPSVVSHTALMEAYGRGGRYK 148 (557)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~ 148 (557)
+..|..|..++..+++.- +-++..|.+-...=-.+|+.+...+++++- ...|+.-+...|-.=...|-..|..-
T Consensus 419 LetYenAkkvLNkaRe~i--ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~ 496 (913)
T KOG0495|consen 419 LETYENAKKVLNKAREII--PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVI 496 (913)
T ss_pred HHHHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChh
Confidence 334444555555544432 233444444444444555555555555432 22344555555555555555555555
Q ss_pred HHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 149 NAEAIFRRMQSSGPRP--SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKL 226 (557)
Q Consensus 149 ~A~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 226 (557)
.+..+....+..|+.- -..||..-...|.+.+.++-|..+|..+++ -++.+...|...+..--..|..+....+
T Consensus 497 TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq----vfp~k~slWlra~~~ek~hgt~Esl~Al 572 (913)
T KOG0495|consen 497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ----VFPCKKSLWLRAAMFEKSHGTRESLEAL 572 (913)
T ss_pred hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh----hccchhHHHHHHHHHHHhcCcHHHHHHH
Confidence 5555555555544431 123455555555555555555555555543 2334444555555444455555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHhc---ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 008708 227 FALMAERGVQQSTVTYNSLMS---FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR 303 (557)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~ll~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 303 (557)
|+++...-. .....|-.... ..|+...|..++.+..+..+. +...|..-+........++.|..+|.+.... .
T Consensus 573 lqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--s 648 (913)
T KOG0495|consen 573 LQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--S 648 (913)
T ss_pred HHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--C
Confidence 555554311 11222221111 135555555555555554332 4445555555555555555555555555442 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 304 PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPD-ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTL 382 (557)
Q Consensus 304 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 382 (557)
|+..+|..-+...--.+..++|.+++++.++. .|+ .-.|..+.+.+-+.++.+.|...|..-.+. +|.....|-.|
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllL 725 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLL 725 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHH
Confidence 44444444444444455555555555555443 222 234445555555555555555555443332 23333344444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH
Q 008708 383 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADER 462 (557)
Q Consensus 383 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 462 (557)
...=-+.|++-+|..++++..-.+ +-+...|-..|..-.+.|..+.|..+..++++. ++.+...|..-+....+.++-
T Consensus 726 akleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccc
Confidence 444455555555555555555433 334555555555555555555555555555442 233334555555555555555
Q ss_pred HHHHHHHHhc
Q 008708 463 NEANELLGNF 472 (557)
Q Consensus 463 ~~a~~~~~~~ 472 (557)
......+++.
T Consensus 804 Tks~DALkkc 813 (913)
T KOG0495|consen 804 TKSIDALKKC 813 (913)
T ss_pred hHHHHHHHhc
Confidence 5555555544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-09 Score=100.58 Aligned_cols=447 Identities=12% Similarity=0.153 Sum_probs=319.8
Q ss_pred Hhhhhhhccch--hchhcchhHHHHHHHHH---hhChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHH
Q 008708 12 KRRKVEVFKDA--ADEAGKKNWRRLMNQIE---EVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWL 86 (557)
Q Consensus 12 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~ 86 (557)
.+|+..+|+++ ...+++..|-.-+..-- ....|..++.+ ....-|.-+...+..+..-..+|...-|.++|+.-
T Consensus 89 ~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dR-Avt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 89 IQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDR-AVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHH-HHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34899999877 56778888876655333 34467777774 33344455556666666666778888999999743
Q ss_pred HhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CC-CC
Q 008708 87 RIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS-GP-RP 164 (557)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~-~~ 164 (557)
.. +.|+...|.+.|..=.+-+.++.|..++++..-- .|++..|-.-...=.++|++..|..+|+..... |- .-
T Consensus 168 ~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 168 ME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred Hc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 32 5689999999999999999999999999998765 589999999999999999999999999988764 11 11
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHcCCC
Q 008708 165 SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKL--------FALMAERGVQ 236 (557)
Q Consensus 165 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~--------~~~~~~~~~~ 236 (557)
+...+.+...--.++..++.|.-+|+-+++.- +.......|..+...=-+.|+....... |+.+.+.+.
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~--pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np- 319 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHI--PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP- 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC-
Confidence 22334444444456778999999999998632 1122255676676666666776555443 333443321
Q ss_pred CCHHH---HHHHhcccCCHHHHHHHHHHHHHCCCCCCHH-HHHHH----HH----HHHhcCCHHHHHHHHHHHHHcCCCC
Q 008708 237 QSTVT---YNSLMSFETNYKEVSKIYDQMQRAGLQPDVV-SYALL----IN----AYGKARREEEALAVFEEMLDAGVRP 304 (557)
Q Consensus 237 ~~~~~---~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l----i~----~~~~~g~~~~A~~~~~~~~~~~~~~ 304 (557)
.|-.+ |-.|....|+.+...++|+.....-++.... .|.-. |+ .-....+.+.+.++|+..++. ++.
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH 398 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH 398 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence 23333 3445556799999999999998864332221 12111 11 124568899999999999883 455
Q ss_pred CHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008708 305 THKAYNILLDAF----AISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYG 380 (557)
Q Consensus 305 ~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 380 (557)
...||..+=-+| .++.++..|.+++...+ |.-|-.-+|...|..-.+.++++.+..+|++.++-+ |-+..+|.
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ 475 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWS 475 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHH
Confidence 566666554444 46788999999998877 447888899999999999999999999999999986 77889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh--
Q 008708 381 TLIKGYAKVNNLEKMMEIYDKMRVNG-IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK-- 457 (557)
Q Consensus 381 ~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-- 457 (557)
.....-...|+.+.|..+|.-++... +......|-+.|+--...|.++.|..+++.+++. .+-..+|-.+...-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~ 553 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASA 553 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccc
Confidence 88888889999999999999998642 1122456777777777899999999999999873 344456655554322
Q ss_pred ---hcC-----------CHHHHHHHHHhcC
Q 008708 458 ---TAD-----------ERNEANELLGNFN 473 (557)
Q Consensus 458 ---~~g-----------~~~~a~~~~~~~~ 473 (557)
..+ +...|+.+++++.
T Consensus 554 ~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 554 SEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred cccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 334 5667788887654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-10 Score=106.13 Aligned_cols=386 Identities=15% Similarity=0.107 Sum_probs=253.5
Q ss_pred hhhccchHHHHHHHHHHHhcCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCh
Q 008708 70 LKQLKKWNVVSEVLEWLRIQSWWDFN-EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRY 147 (557)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~ 147 (557)
+-..+.++.|.+.+.|++... |+ +..|.....+|...|++++..+--.+.++.+ |+ +.++..-.+++-..|++
T Consensus 125 ~f~~kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~lg~~ 199 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQLGKF 199 (606)
T ss_pred hhhcccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhhccH
Confidence 455677888888888888776 45 6778888888888888888888887777763 44 55677777777788888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH-----------
Q 008708 148 KNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK----------- 216 (557)
Q Consensus 148 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------- 216 (557)
++|+.=..-..-.+.-.+..+-..+=+.+-+. |..-...-+......+-|+.....+....+..
T Consensus 200 ~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~-----a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 200 DEALFDVTVLCILEGFQNASIEPMAERVLKKQ-----AMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred HHHHHhhhHHHHhhhcccchhHHHHHHHHHHH-----HHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 87765333221111111222211111111111 11222222211122333433322222221110
Q ss_pred --------------cC---CHHHHHHHHHHHHHc-CCCCCHH---------HHHHHhc-----ccCCHHHHHHHHHHHHH
Q 008708 217 --------------AG---GYEKARKLFALMAER-GVQQSTV---------TYNSLMS-----FETNYKEVSKIYDQMQR 264 (557)
Q Consensus 217 --------------~g---~~~~A~~~~~~~~~~-~~~~~~~---------~~~~ll~-----~~~~~~~a~~~~~~~~~ 264 (557)
.+ .+..|...+.+-... -..++.. .-..++. ..|+.-.+..-|+..+.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 01 223333332221110 0011111 1111122 15788888888998888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008708 265 AGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSY 344 (557)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 344 (557)
....++ ..|--+..+|....+.++....|++..+.. +-++.+|..-..++.-.+++++|..=|++..... +.+...|
T Consensus 355 l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~ 431 (606)
T KOG0547|consen 355 LDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAY 431 (606)
T ss_pred cCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHH
Confidence 754433 337778889999999999999999998865 4567788888888888999999999999998764 3366778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCcCHHH--HHHH
Q 008708 345 TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG-----IKPNQTI--FTTI 417 (557)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~--~~~l 417 (557)
-.+..+..+.+.+++++..|++..+. +|..+..|+.....+...+++++|.+.|+..++.. +..+... --.+
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~ 510 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKAL 510 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhH
Confidence 88888888999999999999999876 57778899999999999999999999999998642 1112222 2222
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 418 MDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 418 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
+-.- =.+++..|..++.++.+ +.|.. ..+..+...-...|+.++|+++|++.
T Consensus 511 l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 511 LVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 2222 23899999999999988 45544 57889999999999999999999874
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.6e-11 Score=103.46 Aligned_cols=303 Identities=16% Similarity=0.142 Sum_probs=219.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS---ALTYQIILK 174 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~ 174 (557)
+|..=++.+. ..+.++|.++|-+|.+.. +-+..+.-+|.+.|.+.|..+.|+++.+.+.+.---+. ..+...|..
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 4444344333 568899999999999864 34666777899999999999999999998876521111 234556777
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHH
Q 008708 175 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKE 254 (557)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 254 (557)
-|...|-++.|+++|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+..+..+-
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~----efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e------------- 178 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEG----EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE------------- 178 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcch----hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH-------------
Confidence 8999999999999999997532 23345677899999999999999999988887654332211
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 255 VSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRR 334 (557)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 334 (557)
-...|.-+...+....+.+.|..++.+..+.. +..+..--.+.+.+...|+++.|++.++.+.+
T Consensus 179 ---------------IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e 242 (389)
T COG2956 179 ---------------IAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLE 242 (389)
T ss_pred ---------------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHH
Confidence 12346667777777888999999999988764 23344445567788889999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 008708 335 DRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIF 414 (557)
Q Consensus 335 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 414 (557)
.+..--..+...|..+|...|+.++....+.++.+.. +....-..+...-....-.+.|..++.+-+.. +|+...+
T Consensus 243 Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf 318 (389)
T COG2956 243 QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGF 318 (389)
T ss_pred hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHH
Confidence 7655556677888889999999999999999988764 34444444444445555566777666665554 6899988
Q ss_pred HHHHHHHHh---cCChhHHHHHHHHHHh
Q 008708 415 TTIMDAYGK---NKDFDSAVVWYKEMES 439 (557)
Q Consensus 415 ~~l~~~~~~---~g~~~~A~~~~~~m~~ 439 (557)
..++..-.. -|...+.+.+++.|+.
T Consensus 319 ~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 319 HRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHhhhccccccchhhhHHHHHHHHH
Confidence 888886543 3456667777777764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.1e-10 Score=102.84 Aligned_cols=351 Identities=16% Similarity=0.151 Sum_probs=221.8
Q ss_pred hhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCh
Q 008708 70 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHT--ALMEAYGRGGRY 147 (557)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~ 147 (557)
++..+..+.|...|.......+ ..-..|..|.... -+.+.+.. .... .+.+...+. .+..++-...+.
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~~P--~~W~AWleL~~li---t~~e~~~~----l~~~-l~~~~h~M~~~F~~~a~~el~q~ 243 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNRYP--WFWSAWLELSELI---TDIEILSI----LVVG-LPSDMHWMKKFFLKKAYQELHQH 243 (559)
T ss_pred HHhhchHHHHHHHHHHHHhcCC--cchHHHHHHHHhh---chHHHHHH----HHhc-CcccchHHHHHHHHHHHHHHHHH
Confidence 3556666777777766665432 2223333333322 22222222 2211 111111111 233455555567
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 148 KNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLF 227 (557)
Q Consensus 148 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 227 (557)
++++.-.+.....|.+.+...-+....+.-...+++.|+.+|+.+.+.+.-. -.|..+|+.++-. +..+-.- .++
T Consensus 244 ~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR-l~dmdlySN~LYv--~~~~skL--s~L 318 (559)
T KOG1155|consen 244 EEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR-LDDMDLYSNVLYV--KNDKSKL--SYL 318 (559)
T ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc-chhHHHHhHHHHH--HhhhHHH--HHH
Confidence 7777777777666665555544445555556677777777777776532111 1344566655432 2221111 111
Q ss_pred HHH--HHcCCCCCHHH-HHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008708 228 ALM--AERGVQQSTVT-YNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRP 304 (557)
Q Consensus 228 ~~~--~~~~~~~~~~~-~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 304 (557)
..- .-...+|.+.+ ....-+..+..+.|...|+...+.++. ....|+.+..-|....+...|++.++.+++-. +.
T Consensus 319 A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~ 396 (559)
T KOG1155|consen 319 AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PR 396 (559)
T ss_pred HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-ch
Confidence 111 11112222211 001111234566777777777776433 56788899999999999999999999998864 56
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 305 THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIK 384 (557)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 384 (557)
|-..|-.|.++|.-.+...-|+-.|++...-. +.|...|.+|...|.+.++.++|++.|++....| ..+...+..|.+
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~Lak 474 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAK 474 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHH
Confidence 77899999999999999999999999998754 5588999999999999999999999999999877 557788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHH----CCCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 385 GYAKVNNLEKMMEIYDKMRV----NGIKPN--QTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
.|-+.++.++|...|++-++ .|...+ ...-.-|..-+.+.+++++|..+......
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 99999999999999988765 232222 22222345566788888888877766654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-10 Score=106.12 Aligned_cols=293 Identities=14% Similarity=0.158 Sum_probs=213.0
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 109 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEV 188 (557)
Q Consensus 109 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 188 (557)
.|+|.+|+++..+-.+.+-. ....|..-+.+.-+.|+.+.+-.++.+..+.-..++...+..........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 69999999999988777633 34556666777888899999999999988764456677777788889999999999999
Q ss_pred HHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCC
Q 008708 189 FMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQ 268 (557)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~ 268 (557)
..++.+.. +.+..+......+|.+.|++.....++..+.+.|.-.+... ..+
T Consensus 176 v~~ll~~~----pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~------------------~~l------ 227 (400)
T COG3071 176 VDQLLEMT----PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA------------------ARL------ 227 (400)
T ss_pred HHHHHHhC----cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH------------------HHH------
Confidence 99987643 55677888899999999999999999999998875443321 000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 269 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTML 348 (557)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 348 (557)
-..+|..++.-....+..+.-...++..... .+-++..-.+++.-+..+|+.++|.++..+..+.+..|+. ...
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~ 301 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRL 301 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHH
Confidence 2235555665555555555555566655433 2445556666777778888888888888888777655552 222
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChh
Q 008708 349 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFD 428 (557)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 428 (557)
-.+.+-++...-++..+...+.. +.++..+.+|+..|.+.+.|.+|...|+...+. .|+..+|+.+..++.+.|++.
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChH
Confidence 34556677776666666655542 445577778888888888888888888877764 678888888888888888888
Q ss_pred HHHHHHHHHHh
Q 008708 429 SAVVWYKEMES 439 (557)
Q Consensus 429 ~A~~~~~~m~~ 439 (557)
+|.++.++.+.
T Consensus 379 ~A~~~r~e~L~ 389 (400)
T COG3071 379 EAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHH
Confidence 88888877764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-11 Score=118.71 Aligned_cols=283 Identities=12% Similarity=0.079 Sum_probs=144.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 111 DFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PSALTYQIILKLFVEANKFKEAEEV 188 (557)
Q Consensus 111 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~~ 188 (557)
+..+|...|++.... +..+..+...+..+|...+++++|.++|+.+.+..+- -+...|.+.+-.+-+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 346777777775544 2223345556677777777777777777777664321 244556555533211 112222
Q ss_pred H-HHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCC
Q 008708 189 F-MTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGL 267 (557)
Q Consensus 189 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~ 267 (557)
+ +.+++. -+-.+.+|.++.++|.-+++.+.|++.|++..+.. |
T Consensus 409 Laq~Li~~----~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p------------------------------ 452 (638)
T KOG1126|consen 409 LAQDLIDT----DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--P------------------------------ 452 (638)
T ss_pred HHHHHHhh----CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--C------------------------------
Confidence 2 222221 13445677777777777777777777777776541 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 268 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 347 (557)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 347 (557)
....+|+.+..-+.....+|.|...|+..+... +-+-..|.-+.-.|.+.++++.|.-.|++..+-+ +.+.+....+
T Consensus 453 -~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~ 529 (638)
T KOG1126|consen 453 -RFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHI 529 (638)
T ss_pred -ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhh
Confidence 133444444444455555555555555544321 1111233334444555555555555555554432 2233444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDF 427 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 427 (557)
...+.+.|+.++|+++++++.... +.|+..--..+..+...+++++|+..++++++. ++-+...|..+...|.+.|+.
T Consensus 530 g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~ 607 (638)
T KOG1126|consen 530 GRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNT 607 (638)
T ss_pred hHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccc
Confidence 455555555555555555555443 223333333344444455555555555555543 122244445555555555555
Q ss_pred hHHHHHHHHHHh
Q 008708 428 DSAVVWYKEMES 439 (557)
Q Consensus 428 ~~A~~~~~~m~~ 439 (557)
+.|+.-|--+.+
T Consensus 608 ~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 608 DLALLHFSWALD 619 (638)
T ss_pred hHHHHhhHHHhc
Confidence 555555555544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-09 Score=98.52 Aligned_cols=286 Identities=15% Similarity=0.128 Sum_probs=230.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008708 143 RGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEK 222 (557)
Q Consensus 143 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 222 (557)
..|+|.+|.++..+-.+.+.. ....|..-..+.-..|+.+.+-.++.++-+. .-.++....-+........|+++.
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~---~~~~~l~v~ltrarlll~~~d~~a 171 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAEL---AGDDTLAVELTRARLLLNRRDYPA 171 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhcc---CCCchHHHHHHHHHHHHhCCCchh
Confidence 369999999999988777655 3456667778888899999999999998642 224566677777888888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008708 223 ARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGV 302 (557)
Q Consensus 223 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 302 (557)
|..-++++.+.+ +-+.........+|.+.|++.....++.++.+.|.
T Consensus 172 A~~~v~~ll~~~---------------------------------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~ 218 (400)
T COG3071 172 ARENVDQLLEMT---------------------------------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGL 218 (400)
T ss_pred HHHHHHHHHHhC---------------------------------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccC
Confidence 998888887753 23566778888999999999999999999999887
Q ss_pred CCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008708 303 RPTHK-------AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN 375 (557)
Q Consensus 303 ~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 375 (557)
-.+.. +|..+++-....+..+.-...++..... ...++..-.+++.-+.+.|+.++|.++.++..+.+..|+
T Consensus 219 l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 219 LSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred CChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 65543 6777777777777777766777776543 244677778888999999999999999999998876666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 376 VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSL 455 (557)
Q Consensus 376 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 455 (557)
. ...-.+.+.++.+.-++..++-.+. .+.++..+.++...|.+.+.|.+|...|+...+ ..|+..++..+..+
T Consensus 298 L----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~ 370 (400)
T COG3071 298 L----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADA 370 (400)
T ss_pred H----HHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHH
Confidence 2 2233566778888888888877664 355678899999999999999999999998887 68999999999999
Q ss_pred HhhcCCHHHHHHHHHhcC
Q 008708 456 AKTADERNEANELLGNFN 473 (557)
Q Consensus 456 ~~~~g~~~~a~~~~~~~~ 473 (557)
+.+.|+..+|.+..++..
T Consensus 371 ~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 371 LDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHcCChHHHHHHHHHHH
Confidence 999999999999998755
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.6e-10 Score=100.02 Aligned_cols=369 Identities=13% Similarity=0.093 Sum_probs=256.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C-hHHH-------------HHHHHHHHhCC--
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG-R-YKNA-------------EAIFRRMQSSG-- 161 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~-~~~A-------------~~~~~~m~~~~-- 161 (557)
-...+.+|...++-+.|...+...+..- ....-|.++..+.+.| + ++.. ++.+.-..+.+
T Consensus 100 ~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~ 176 (564)
T KOG1174|consen 100 RRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVN 176 (564)
T ss_pred HHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhc
Confidence 3457788888888888888776655432 1222233333222222 1 1211 11111111211
Q ss_pred -------------CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 162 -------------PRPSALTYQIILKLFV--EANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKL 226 (557)
Q Consensus 162 -------------~~~~~~~~~~ll~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 226 (557)
..|...+....+.+++ -.++...|...+-.+-. ...++-|......+..++...|+.++|+..
T Consensus 177 g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~--~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~ 254 (564)
T KOG1174|consen 177 GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHD--NTTLRCNEHLMMALGKCLYYNGDYFQAEDI 254 (564)
T ss_pred chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHh--hccCCccHHHHHHHhhhhhhhcCchHHHHH
Confidence 2333333334444443 33455555555544432 456778888999999999999999999999
Q ss_pred HHHHHHcCCC--CCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008708 227 FALMAERGVQ--QSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRP 304 (557)
Q Consensus 227 ~~~~~~~~~~--~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 304 (557)
|++....++- .....|..++...|++++...+...+.... .-+...|-.-+......++++.|+.+-++.++.. +.
T Consensus 255 Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r 332 (564)
T KOG1174|consen 255 FSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PR 332 (564)
T ss_pred HHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cc
Confidence 9998765321 123457778888899998888887776542 1233344444555667789999999999988753 23
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-
Q 008708 305 THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLI- 383 (557)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~- 383 (557)
+...|..-...+...|+.++|.-.|+...... +-+..+|..|+..|...|.+.+|.-+-++.... ++.+..+.+.+.
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~ 410 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGT 410 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcc
Confidence 44556555667888999999999999887543 457889999999999999999999888877664 356777776663
Q ss_pred HHHH-HcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 008708 384 KGYA-KVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADE 461 (557)
Q Consensus 384 ~~~~-~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 461 (557)
..|. ....-++|.+++++.+.. .|+ ....+.+...|...|+.+.++.+++..+. ..||....+.|...+...+.
T Consensus 411 ~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne 486 (564)
T KOG1174|consen 411 LVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNE 486 (564)
T ss_pred eeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhh
Confidence 3333 223458899999988864 566 56778888899999999999999999987 68999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCC
Q 008708 462 RNEANELLGNFNHPNNEPG 480 (557)
Q Consensus 462 ~~~a~~~~~~~~~~~~~~~ 480 (557)
+.+|...+....+.++...
T Consensus 487 ~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 487 PQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHHHHHHhcCccch
Confidence 9999999999886666543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.1e-09 Score=99.54 Aligned_cols=392 Identities=15% Similarity=0.149 Sum_probs=229.1
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008708 64 LGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR 143 (557)
Q Consensus 64 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 143 (557)
+..+.++...+++...+++.+.+.+.. +-...+.....-.+...|+-++|......-.... ..+.++|..+.-.+..
T Consensus 11 F~~~lk~yE~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCYETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 344445555566666777666666532 2334555555556666677777777766665543 3366677777777766
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 144 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKA 223 (557)
Q Consensus 144 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 223 (557)
..++++|+..|......+.. |...+.-+.-.-++.++++.....-..+++. .+.....|..++.++.-.|++..|
T Consensus 88 dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql----~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQL----RPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777665433 5555555555555666666666655555531 123345566666666677777777
Q ss_pred HHHHHHHHHcC-CCCCHHHHHHHhc---------ccCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 008708 224 RKLFALMAERG-VQQSTVTYNSLMS---------FETNYKEVSKIYDQMQRAGLQPDVV-SYALLINAYGKARREEEALA 292 (557)
Q Consensus 224 ~~~~~~~~~~~-~~~~~~~~~~ll~---------~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~ 292 (557)
..+++...+.. -.|+...+..... -.|..++|.+.+..-...- .|.. .-.+-...+.+.+++++|..
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 77777666543 2344433332111 1344555555444433221 1211 22334455667777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHH-HHHHcCCHHHHH-HH----------------------------------HHHHHhCC
Q 008708 293 VFEEMLDAGVRPTHKAYNILLD-AFAISGMVDQAR-TV----------------------------------FKCMRRDR 336 (557)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~-~~----------------------------------~~~~~~~~ 336 (557)
++..++.. .||..-|...+. ++.+-.+.-++. .+ +..+.+.|
T Consensus 241 ~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 241 VYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 77777665 355544433333 232222222222 33 33333334
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------hCC----------CCCCHH--HHHHHHHHHHHcCCHHHHH
Q 008708 337 CSPDICSYTTMLSAYVNASDMEGAEKFFRRLK--------QDG----------FVPNVI--TYGTLIKGYAKVNNLEKMM 396 (557)
Q Consensus 337 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~~----------~~p~~~--~~~~l~~~~~~~g~~~~a~ 396 (557)
+++ ++..+.+.|-. +.++- +++++. ..| -+|... ++..++..+-+.|+++.|.
T Consensus 319 ~p~---vf~dl~SLyk~---p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~ 391 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKD---PEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVAL 391 (700)
T ss_pred CCc---hhhhhHHHHhc---hhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHH
Confidence 332 22222222211 11111 222221 111 145554 4556788899999999999
Q ss_pred HHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC
Q 008708 397 EIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHP 475 (557)
Q Consensus 397 ~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (557)
.+++..+.+ .|+ ...|..-.+.+..+|++++|..++++..+.+ .||...-.--+....+.++.++|.++..+..+.
T Consensus 392 ~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 392 EYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTRE 468 (700)
T ss_pred HHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhc
Confidence 999999975 666 4667777788999999999999999999865 556555556677788899999999999988766
Q ss_pred CC
Q 008708 476 NN 477 (557)
Q Consensus 476 ~~ 477 (557)
+.
T Consensus 469 ~~ 470 (700)
T KOG1156|consen 469 GF 470 (700)
T ss_pred cc
Confidence 54
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-09 Score=102.00 Aligned_cols=365 Identities=14% Similarity=0.076 Sum_probs=243.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 177 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 177 (557)
+-...+-|.+.|++++|++.|...++. .|+ +..|.....+|...|+|++..+.-.+.++.++. -...+..-.+++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 345677889999999999999999987 477 888999999999999999999988887775332 2345555566777
Q ss_pred HcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcC--CCCCHHHHHHHhccc-----
Q 008708 178 EANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFAL-MAERG--VQQSTVTYNSLMSFE----- 249 (557)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~--~~~~~~~~~~ll~~~----- 249 (557)
..|++++|+.=..-+-- ..++ .+..+--.+=+.+-+. |....++ +.+.+ +-|+....++.....
T Consensus 195 ~lg~~~eal~D~tv~ci--~~~F-~n~s~~~~~eR~Lkk~-----a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCI--LEGF-QNASIEPMAERVLKKQ-----AMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred hhccHHHHHHhhhHHHH--hhhc-ccchhHHHHHHHHHHH-----HHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 77888777643222110 0011 1111111111111111 1111111 11111 334444444433210
Q ss_pred -----------CCHHHHHHHH------------HHHHHC------CCCCC---------HHHHHHHHHHHHhcCCHHHHH
Q 008708 250 -----------TNYKEVSKIY------------DQMQRA------GLQPD---------VVSYALLINAYGKARREEEAL 291 (557)
Q Consensus 250 -----------~~~~~a~~~~------------~~~~~~------~~~~~---------~~~~~~li~~~~~~g~~~~A~ 291 (557)
....++.+.+ +.+.+. ....+ ..+.......+.-.|+...|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 0112222211 111111 11111 222333333455678889999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008708 292 AVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG 371 (557)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 371 (557)
.-|+..++....+ ...|-.+..+|....+.++....|+.....+ +-++.+|..-.+.+.-.+++++|..=|++.+...
T Consensus 347 ~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 347 EDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred hhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999998865332 3337778888999999999999999998765 4467788888888999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC------
Q 008708 372 FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD------ 445 (557)
Q Consensus 372 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~------ 445 (557)
+-+...|-.+..+..+.+++++++..|++.++. ++.-+..|+.....+...++++.|.+.|+..++ +.|+
T Consensus 425 -pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v 500 (606)
T KOG0547|consen 425 -PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIV 500 (606)
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccc
Confidence 567788888888889999999999999999876 566689999999999999999999999999987 3444
Q ss_pred ---HHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCCCc
Q 008708 446 ---QKAKNILLSLAKTADERNEANELLGNFNHPNNEPGI 481 (557)
Q Consensus 446 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 481 (557)
+.+..+++-.-. .+++..|..++++..+.++....
T Consensus 501 ~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~ 538 (606)
T KOG0547|consen 501 NAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQ 538 (606)
T ss_pred cchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHH
Confidence 222233332222 38999999999999877775443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.2e-11 Score=103.28 Aligned_cols=233 Identities=16% Similarity=0.155 Sum_probs=194.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008708 208 HMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARRE 287 (557)
Q Consensus 208 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (557)
+.+..+|.+.|.+.+|.+.|+..++. .|-+.||..|...|.+..++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q----------------------------------~~~~dTfllLskvY~ridQP 272 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ----------------------------------FPHPDTFLLLSKVYQRIDQP 272 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc----------------------------------CCchhHHHHHHHHHHHhccH
Confidence 55788888888888888888776654 45777888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 288 EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 367 (557)
Q Consensus 288 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (557)
..|+.++.+-++. .+.++.........+...++.++|.++++...+.. +.++....++...|...++++-|+.+|+++
T Consensus 273 ~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 273 ERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred HHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 9999999998875 23344444567778889999999999999998764 456777788888999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 008708 368 KQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN--QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD 445 (557)
Q Consensus 368 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 445 (557)
++.| .-++..|+.+.-+|...++++.++..|++....--.|+ ..+|-.+.......|++..|.+.|+-.+..+ ...
T Consensus 351 LqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h 428 (478)
T KOG1129|consen 351 LQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQH 428 (478)
T ss_pred HHhc-CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cch
Confidence 9999 55889999999999999999999999999886533344 5678888888899999999999999998753 334
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCC
Q 008708 446 QKAKNILLSLAKTADERNEANELLGNFNHPNNE 478 (557)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (557)
...++.|.-.-.+.|+++.|+.++.......+.
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 478999999999999999999999987655543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.5e-10 Score=103.85 Aligned_cols=200 Identities=11% Similarity=0.068 Sum_probs=166.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 349 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 349 (557)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35667888899999999999999999998753 4456788888999999999999999999988764 446677888899
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChh
Q 008708 350 AYVNASDMEGAEKFFRRLKQDGF-VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFD 428 (557)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 428 (557)
.+...|++++|.+.+++...... +.....+..+..++...|++++|...+.+..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 99999999999999999887532 2345567778899999999999999999998753 345678888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 429 SAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 429 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
+|..++++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999875 35566777788888999999999999887764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.9e-10 Score=113.12 Aligned_cols=233 Identities=10% Similarity=0.017 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHH
Q 008708 164 PSALTYQIILKLFVE-----ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK---------AGGYEKARKLFAL 229 (557)
Q Consensus 164 ~~~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~ 229 (557)
.+...|...+++... .+.+++|..+|+++++.. +.+...|..+..++.. .+++++|...+++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld----P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS----PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 455555555544321 134567777887777532 2334455555554432 2346788888877
Q ss_pred HHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 008708 230 MAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAY 309 (557)
Q Consensus 230 ~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 309 (557)
..+.. +-+...+..+...+...|++++|...|+++.+.. +.+...+
T Consensus 330 Al~ld---------------------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~ 375 (553)
T PRK12370 330 ATELD---------------------------------HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIK 375 (553)
T ss_pred HHhcC---------------------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 77642 1244455555556666666666666666666543 2334455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 310 NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 389 (557)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 389 (557)
..+..++...|++++|...+++..+.... +...+..++..+...|++++|...++++.....+.+...+..+..++...
T Consensus 376 ~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~ 454 (553)
T PRK12370 376 YYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLK 454 (553)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhC
Confidence 56666666666666666666666654321 22222333334555666666666666665443122344455566666666
Q ss_pred CCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 390 NNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 390 g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
|++++|...+.++... .|+ ....+.+...|...| +.|...++.+.+
T Consensus 455 G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 455 GKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred CCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 6666666666665443 223 233344444555555 355555555543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.4e-10 Score=101.61 Aligned_cols=132 Identities=20% Similarity=0.230 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 97 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLF 176 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 176 (557)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+..+. +...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence 344555555556666666666666555442 223445555555555555555555555555544322 334444455555
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 177 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
...|++++|.+.+.+++... ..+.....+..+..++...|++++|...+.+...
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDP--LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred HHcccHHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555554311 1112223344444455555555555555544443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.6e-09 Score=91.79 Aligned_cols=415 Identities=14% Similarity=0.135 Sum_probs=249.1
Q ss_pred hChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 008708 41 VGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLS 120 (557)
Q Consensus 41 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 120 (557)
+..|+++++....-+....++.-.=+....-++|++++|+..+..+.... .++...+..|.-++.-.|.+.+|..+-.
T Consensus 38 ytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 38 YTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred chhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 44677777743322222222222333345567888888888888887754 3555666677777777788888888765
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCC
Q 008708 121 FMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPL 200 (557)
Q Consensus 121 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 200 (557)
+..+ ++-.-..|+....+.|+-++-..+.+.+... ..--.+|.....-.-.+.+|++++.+++..
T Consensus 116 ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d----- 180 (557)
T KOG3785|consen 116 KAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD----- 180 (557)
T ss_pred hCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 5432 4444555556666667766666655554321 111223333333344678899999988742
Q ss_pred CCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc-----cCCHHH--HHHHH----------HHH
Q 008708 201 KPDQKMFHM-MIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF-----ETNYKE--VSKIY----------DQM 262 (557)
Q Consensus 201 ~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-----~~~~~~--a~~~~----------~~~ 262 (557)
.|+....|. +.-+|.+..-++-+.++++-.... ++.++...|..... .|+..+ ...+. +.+
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l 259 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL 259 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH
Confidence 344444554 455777888888888888776654 22233333332221 122111 11111 111
Q ss_pred HHCC------------CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHHcC
Q 008708 263 QRAG------------LQPD-----VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDA-----FAISG 320 (557)
Q Consensus 263 ~~~~------------~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g 320 (557)
.+.+ +-|. +..-..|+-.|.+.++..+|..+.+++.- ..|.......+..+ .....
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHH
Confidence 1111 0111 22334566678899999999999887642 12333333222222 11222
Q ss_pred CHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 321 MVDQARTVFKCMRRDRCSPDIC-SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIY 399 (557)
Q Consensus 321 ~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 399 (557)
...-|.+.|+-.-..+..-|.. .-.++.+.+.-..++++++.+++.+..-=...|...|| +..+++..|++.+|.++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHH
Confidence 3566677776665554443332 24456666677778999999999887754444555554 789999999999999999
Q ss_pred HHHHHCCCCcCHHHH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC
Q 008708 400 DKMRVNGIKPNQTIF-TTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFNHPNN 477 (557)
Q Consensus 400 ~~m~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (557)
-++....++ |..+| ..+.++|.+.++++.|..++-++- -+.+. ..+..+..-|.+.+.+--|.+.+..+...++
T Consensus 417 ~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 417 IRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 888755444 44455 556678999999999987765553 23333 3455666789999999999999988877766
Q ss_pred CCC
Q 008708 478 EPG 480 (557)
Q Consensus 478 ~~~ 480 (557)
.|.
T Consensus 493 ~pE 495 (557)
T KOG3785|consen 493 TPE 495 (557)
T ss_pred Ccc
Confidence 553
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.6e-10 Score=110.13 Aligned_cols=247 Identities=21% Similarity=0.266 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CCCHHHH-HHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC
Q 008708 131 VVSHTALMEAYGRGGRYKNAEAIFRRMQSS-----GP-RPSALTY-QIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD 203 (557)
Q Consensus 131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 203 (557)
..+...+...|...|+++.|..+++...+. |. .|...+. ..+...|...+++++|..+|+.++......+.++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445666888999999999999999887654 21 2333333 3467788899999999999999886533223233
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 008708 204 ----QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDV-VSYALLI 278 (557)
Q Consensus 204 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li 278 (557)
..+++.|..+|.+.|++++|...++...+ +++..... ..|.+ ..++.++
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~-------------------------I~~~~~~~-~~~~v~~~l~~~~ 332 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALE-------------------------IYEKLLGA-SHPEVAAQLSELA 332 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH-------------------------HHHHhhcc-ChHHHHHHHHHHH
Confidence 35677788889999999999998865543 34442111 12222 2466777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----C--CC-CHHHH
Q 008708 279 NAYGKARREEEALAVFEEMLDA---GVRPT----HKAYNILLDAFAISGMVDQARTVFKCMRRDR----C--SP-DICSY 344 (557)
Q Consensus 279 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~--~~-~~~~~ 344 (557)
..|...+++++|..++....+. -..++ ..+++.|...|...|++++|.++|+++.... . .+ ....+
T Consensus 333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 7888899999999888876432 11112 2467777777777777777777777665421 1 11 12345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh----CC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 345 TTMLSAYVNASDMEGAEKFFRRLKQ----DG--FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 403 (557)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~----~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (557)
+.+...|.+.+++.+|.++|.+... .| .+....+|..|...|...|+++.|.++.+.+.
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 6666666666666666666655322 11 11223456666666666666666666655554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.2e-10 Score=113.88 Aligned_cols=269 Identities=12% Similarity=0.063 Sum_probs=177.6
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHhH
Q 008708 128 APSVVSHTALMEAYGR-----GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE---------ANKFKEAEEVFMTLL 193 (557)
Q Consensus 128 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~---------~g~~~~A~~~~~~~~ 193 (557)
+.+...|...+.+... .+.+++|+..|++..+..+. +...|..+..++.. .+++++|...+++++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3466666666555321 24588999999998876543 45566655554432 244789999999988
Q ss_pred hccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHH
Q 008708 194 DEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVS 273 (557)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~ 273 (557)
+.. +.+..++..+...+...|++++|...|++..+.+ +.+...
T Consensus 332 ~ld----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------------------------P~~~~a 374 (553)
T PRK12370 332 ELD----HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS---------------------------------PISADI 374 (553)
T ss_pred hcC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------------------------CCCHHH
Confidence 532 4567788888888889999999999998888752 224556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 274 YALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN 353 (557)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (557)
+..+...+...|++++|+..+++..+.... +...+..++..+...|++++|...+++......+.++..+..+..++..
T Consensus 375 ~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~ 453 (553)
T PRK12370 375 KYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSL 453 (553)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHh
Confidence 777788888888888888888888776422 2223334444566678888888888887765423345567777788888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCChhHHHH
Q 008708 354 ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN-GIKPNQTIFTTIMDAYGKNKDFDSAVV 432 (557)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~ 432 (557)
.|++++|...+.++.... +.+....+.+...|...| ++|...++.+.+. ...+....+.. ..+.-.|+.+.+..
T Consensus 454 ~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~--~~~~~~g~~~~~~~ 528 (553)
T PRK12370 454 KGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLP--LVLVAHGEAIAEKM 528 (553)
T ss_pred CCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHH--HHHHHHhhhHHHHH
Confidence 889888888888876542 223344555556666666 4777777776642 12232233333 33445667666666
Q ss_pred HHHHHHhCC
Q 008708 433 WYKEMESCG 441 (557)
Q Consensus 433 ~~~~m~~~~ 441 (557)
+ +++.+.+
T Consensus 529 ~-~~~~~~~ 536 (553)
T PRK12370 529 W-NKFKNED 536 (553)
T ss_pred H-HHhhccc
Confidence 6 7776543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-10 Score=110.49 Aligned_cols=248 Identities=20% Similarity=0.224 Sum_probs=183.1
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKK-----G-YAPSVV-SHTALMEAYGRGGRYKNAEAIFRRMQSS-----GP- 162 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~- 162 (557)
..++..|...|...|+++.|..+++...+. | ..|.+. ..+.+...|...+++.+|..+|+++... |.
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346667999999999999999999987764 2 123333 3445788999999999999999998652 22
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCC---CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008708 163 -RPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKS---PLKPDQ-KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQ 237 (557)
Q Consensus 163 -~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 237 (557)
+.-..+++.|..+|.+.|++++|...++.+++.... ...|.+ ..++.++..+...+++++|..++....+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i---- 354 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI---- 354 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH----
Confidence 123456778888999999999999999888764322 122333 34666888899999999999999765542
Q ss_pred CHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C---CCCHHHHH
Q 008708 238 STVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG----V---RPTHKAYN 310 (557)
Q Consensus 238 ~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~---~~~~~~~~ 310 (557)
+..........-..+++.|...|.+.|++++|.++|++.+... . .-....++
T Consensus 355 ---------------------~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 355 ---------------------YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLN 413 (508)
T ss_pred ---------------------HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHH
Confidence 2222111111234679999999999999999999999986431 1 12244678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh----CC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 311 ILLDAFAISGMVDQARTVFKCMRR----DR--CSPDICSYTTMLSAYVNASDMEGAEKFFRRLK 368 (557)
Q Consensus 311 ~li~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (557)
.+...|.+.+.+.+|..+|.+... .| .+....+|..|...|...|+++.|+++...+.
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 889999999999999988886532 12 22345789999999999999999999988876
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-07 Score=89.26 Aligned_cols=417 Identities=13% Similarity=0.131 Sum_probs=243.1
Q ss_pred hChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 008708 41 VGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLS 120 (557)
Q Consensus 41 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 120 (557)
+++|++... .+....+-+.+.++--+..+....+|+.|+.+.+.-.. ...+...+.--..+..+.++.++|...++
T Consensus 28 ~e~a~k~~~-Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fEKAYc~Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 28 YEEAVKTAN-KILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFEKAYCEYRLNKLDEALKTLK 103 (652)
T ss_pred HHHHHHHHH-HHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHHHHHHHHHcccHHHHHHHHh
Confidence 446666666 34556677777777777778888888888855433221 11111222344666678888899888887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---------------------------CHHHHHHH-
Q 008708 121 FMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP---------------------------SALTYQII- 172 (557)
Q Consensus 121 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---------------------------~~~~~~~l- 172 (557)
.... .+..+...-...+.+.|++++|+++|+.+.+.+... ...+|..+
T Consensus 104 ~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~y 179 (652)
T KOG2376|consen 104 GLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLY 179 (652)
T ss_pred cccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHH
Confidence 3322 244466666777888889999999988886543310 11133322
Q ss_pred --HHHHHHcCCHHHHHHHHHHhHhccCCC-----C-CCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 008708 173 --LKLFVEANKFKEAEEVFMTLLDEEKSP-----L-KPDQ-----KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQST 239 (557)
Q Consensus 173 --l~~~~~~g~~~~A~~~~~~~~~~~~~~-----~-~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 239 (557)
...+...|++.+|+++++...+..... . ..+. .+..-|.-++-..|+.++|..+|...+...+....
T Consensus 180 N~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 180 NTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEP 259 (652)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCch
Confidence 234566788888888888773221000 0 0111 12233555666778888888888888776543221
Q ss_pred ---HHHHHHhcccCC--H--HHHHHHHHHHHHCCC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008708 240 ---VTYNSLMSFETN--Y--KEVSKIYDQMQRAGL----------QPDVVSYALLINAYGKARREEEALAVFEEMLDAGV 302 (557)
Q Consensus 240 ---~~~~~ll~~~~~--~--~~a~~~~~~~~~~~~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 302 (557)
+.-|.++...++ + ..++..++....... .-... +...+....-.+..+.+.++...... .
T Consensus 260 ~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i-~~N~~lL~l~tnk~~q~r~~~a~lp~--~ 336 (652)
T KOG2376|consen 260 SLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAI-YRNNALLALFTNKMDQVRELSASLPG--M 336 (652)
T ss_pred HHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHhCCc--c
Confidence 222333332111 1 122222222111100 00011 11111111223334444444333322 1
Q ss_pred CCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhCCC
Q 008708 303 RPTHKAYNILLDAFAI--SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFR--------RLKQDGF 372 (557)
Q Consensus 303 ~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~ 372 (557)
.|. ..+.+++..+.+ .....++..++...-+..........-.++......|+++.|.+++. .+.+.+.
T Consensus 337 ~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~ 415 (652)
T KOG2376|consen 337 SPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH 415 (652)
T ss_pred Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 233 344444444332 22467778887777665433345667777888899999999999999 5555444
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCcCHH----HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 008708 373 VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN--GIKPNQT----IFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 446 (557)
Q Consensus 373 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 446 (557)
.| .+...+...+.+.++.+.|..++.+.... .-.+... ++..++..-.+.|+-++|..+++++.+.. ++|.
T Consensus 416 ~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~ 492 (652)
T KOG2376|consen 416 LP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDT 492 (652)
T ss_pred Ch--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchH
Confidence 44 45566777888888888888888777641 1122223 33333344457899999999999999854 6788
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 447 KAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
.+...++.+|.+. +.+.|..+-+++.
T Consensus 493 ~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 493 DLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 8999999999988 7888988887765
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-09 Score=101.01 Aligned_cols=284 Identities=15% Similarity=0.124 Sum_probs=150.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHH
Q 008708 128 APSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMF 207 (557)
Q Consensus 128 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 207 (557)
..+......-..-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+=.++++ ..|....+|
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~----~yP~~a~sW 315 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVD----LYPSKALSW 315 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHH----hCCCCCcch
Confidence 4567777777777778888888888888877663 34555666666677777777776666666764 335556778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008708 208 HMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARRE 287 (557)
Q Consensus 208 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (557)
.+++-.|...|+..+|.+.|.+....... -...|......|.-.|..
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD~~---------------------------------fgpaWl~fghsfa~e~Eh 362 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLDPT---------------------------------FGPAWLAFGHSFAGEGEH 362 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcCcc---------------------------------ccHHHHHHhHHhhhcchH
Confidence 88888787788888888888776543111 122344444444444444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 288 EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 367 (557)
Q Consensus 288 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (557)
++|+..+..+-+. ++.....+.-+.--|.+.+.++.|.+.|.+..... +.|+...+-+.-.....+.+.+|..+|+..
T Consensus 363 dQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~ 440 (611)
T KOG1173|consen 363 DQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKA 440 (611)
T ss_pred HHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHH
Confidence 4444444443221 01111111112223344444444444444443221 234444444444444444444444444443
Q ss_pred HhC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 008708 368 KQD------GFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG 441 (557)
Q Consensus 368 ~~~------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 441 (557)
+.. ....-..+++.|+.+|.+.+.+++|+..+++.+... +-+..++.++.-.|...|+++.|...|.+.+.
T Consensus 441 l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~-- 517 (611)
T KOG1173|consen 441 LEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA-- 517 (611)
T ss_pred HHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--
Confidence 310 000123345555555555555555555555555431 33455555555555555555555555555554
Q ss_pred CCCCHHHHHHHHH
Q 008708 442 FPPDQKAKNILLS 454 (557)
Q Consensus 442 ~~p~~~~~~~l~~ 454 (557)
+.|+..+...+++
T Consensus 518 l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 518 LKPDNIFISELLK 530 (611)
T ss_pred cCCccHHHHHHHH
Confidence 4455544444444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-08 Score=99.20 Aligned_cols=288 Identities=14% Similarity=0.194 Sum_probs=157.4
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc---
Q 008708 141 YGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA--- 217 (557)
Q Consensus 141 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 217 (557)
+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.. +.+..-|..+..+..-.
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN----Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN----PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHhhhccc
Confidence 34455555555555443322 22223333444455555555555555555555321 22222222333333111
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCC-H-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 008708 218 --GGYEKARKLFALMAERGVQQSTVTYNSLMSFETN-Y-KEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAV 293 (557)
Q Consensus 218 --g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 293 (557)
.+.+....+|+++...-...+..-.-.|....|. + ..+...+..+...|++ .+|+.+-..|....+..-...+
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 1344455555555443322121111111111111 1 2333444555555543 2455555555544444444444
Q ss_pred HHHHHHc----C----------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 294 FEEMLDA----G----------VRPTH--KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDM 357 (557)
Q Consensus 294 ~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 357 (557)
+...... + -+|+. .++.-+...|...|++++|+.++++.+... +..+..|..-...+-+.|++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCH
Confidence 4444321 0 12333 244556677778888888888888887663 22356777777888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHH------HH--HHHHHHHHhcCChhH
Q 008708 358 EGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT------IF--TTIMDAYGKNKDFDS 429 (557)
Q Consensus 358 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~--~~l~~~~~~~g~~~~ 429 (557)
.+|.+.++.....+ .-|...-+-.+..+.+.|++++|.+++......+..|-.. .| .....+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 88888888888775 4577777777788888888888888888887655333221 12 334567888888888
Q ss_pred HHHHHHHHH
Q 008708 430 AVVWYKEME 438 (557)
Q Consensus 430 A~~~~~~m~ 438 (557)
|++-|....
T Consensus 324 ALk~~~~v~ 332 (517)
T PF12569_consen 324 ALKRFHAVL 332 (517)
T ss_pred HHHHHHHHH
Confidence 877766554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.7e-09 Score=99.06 Aligned_cols=277 Identities=14% Similarity=0.075 Sum_probs=209.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 008708 161 GPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTV 240 (557)
Q Consensus 161 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 240 (557)
+..-+.........-|...+++.+..++.+.+++. .++...++-.-|.++...|+..+-..+=.++.+.
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~----dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~------- 307 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK----DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL------- 307 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh----CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-------
Confidence 34557777777788888899999999999999863 2556666777777888889888888777777765
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 008708 241 TYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG 320 (557)
Q Consensus 241 ~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 320 (557)
.+....+|-++.-.|.-.|+..+|.+.|.+..... +.-...|..+...|+-.|
T Consensus 308 --------------------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~ 360 (611)
T KOG1173|consen 308 --------------------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEG 360 (611)
T ss_pred --------------------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcc
Confidence 23356778888888888899999999999876542 122347888888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008708 321 MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYD 400 (557)
Q Consensus 321 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 400 (557)
..+.|+..+...-+.- +-....+--+.--|.+.++.+.|.++|.+..... |.|+...+-+.-.....+.+.+|..+|+
T Consensus 361 EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 361 EHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred hHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 9999998887765431 1011122234456778899999999999888764 6677888888888888899999999998
Q ss_pred HHHHC------CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCC
Q 008708 401 KMRVN------GIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNH 474 (557)
Q Consensus 401 ~m~~~------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 474 (557)
..+.. ...--..+++.+..+|.+.+++++|+..+++.+.. .+.+..++..+.-.+...|+++.|...+.+...
T Consensus 439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 87721 11123556888889999999999999999999874 255778888888889999999999999988765
Q ss_pred CCCC
Q 008708 475 PNNE 478 (557)
Q Consensus 475 ~~~~ 478 (557)
.++.
T Consensus 518 l~p~ 521 (611)
T KOG1173|consen 518 LKPD 521 (611)
T ss_pred cCCc
Confidence 5443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-07 Score=92.69 Aligned_cols=379 Identities=12% Similarity=0.047 Sum_probs=263.1
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHH
Q 008708 92 WDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP-SALTYQ 170 (557)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~ 170 (557)
+..++..|..|.-++...|+++.+.+.|++....- --....|+.+...|...|.-..|..+++.-......| +...+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 44578889999999999999999999999987543 2367789999999999999999999998876654334 344444
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHhHhc--cCCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCC
Q 008708 171 IILKLFV-EANKFKEAEEVFMTLLDE--EKSPLKPDQKMFHMMIYMYKKA-----------GGYEKARKLFALMAERGVQ 236 (557)
Q Consensus 171 ~ll~~~~-~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~ 236 (557)
..-..|. +.+..++++.+..+++.. ...+ ......|..+.-+|... ....++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~-~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRS-HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhh-hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4444444 457788888888777751 1111 12234455555555433 1245678888888776543
Q ss_pred -CCHHHHHHHhcc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---------
Q 008708 237 -QSTVTYNSLMSF-ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT--------- 305 (557)
Q Consensus 237 -~~~~~~~~ll~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------- 305 (557)
|+...|-++-.+ .++.+.|....++..+.+...+...|..+.-.+...+++.+|+.+.+.....- |+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchhhh
Confidence 445555555444 68899999999999988767788999999999999999999999988776531 11
Q ss_pred ------------HHHHHHHHHHHHH---------cC--------------CHHHHHHHHHHHH--------hCC------
Q 008708 306 ------------HKAYNILLDAFAI---------SG--------------MVDQARTVFKCMR--------RDR------ 336 (557)
Q Consensus 306 ------------~~~~~~li~~~~~---------~g--------------~~~~A~~~~~~~~--------~~~------ 336 (557)
..|...++..+-. .| +..+|.+....+. ..+
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 1122222222210 00 1111111111110 001
Q ss_pred ---CC--CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 337 ---CS--PD------ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 337 ---~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
.. |+ ...|......+.+.++.++|...+.+..... +.....|...+..+...|++++|.+.|......
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 00 11 1234455667788889999988888877653 667778888888999999999999999998875
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC
Q 008708 406 GIKPNQTIFTTIMDAYGKNKDFDSAVV--WYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNN 477 (557)
Q Consensus 406 ~~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (557)
+ +.+..+..++..++.+.|+..-|.. ++.++.+.+ +-++..|..+...+.+.|+.+.|.+.+........
T Consensus 714 d-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 714 D-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred C-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 3 3346788899999999999888888 999999855 55778999999999999999999999987664443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.9e-10 Score=97.90 Aligned_cols=223 Identities=14% Similarity=0.132 Sum_probs=101.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc---
Q 008708 171 IILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS--- 247 (557)
Q Consensus 171 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~--- 247 (557)
.+.++|.+.|.+.+|++.++..++. .|-+.||..|-.+|.+..+.+.|+.+|.+-.+. .|..+||..-+.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q-----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ-----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc-----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHH
Confidence 4445555555555555555555421 234445555555555555555555555544432 122222211100
Q ss_pred -ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 248 -FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQAR 326 (557)
Q Consensus 248 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 326 (557)
..++.+++.++|+...+.. +.++.....+...|.-.++++-|+.+|+++++.|+ .++..|+.+.-+|.-.++++-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhH
Confidence 1122222222333222221 12334444444455555555555555555555553 34455555555555555555555
Q ss_pred HHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 327 TVFKCMRRDRCSPDI--CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 403 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (557)
..|.+....--.|+. ..|..+....+..|++..|.+.|+-.+..+ +.+...++.|.-.-.+.|+++.|..+++...
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 555554433222221 234444444444455555555555444433 3334445555444455555555555554444
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.5e-10 Score=110.37 Aligned_cols=90 Identities=19% Similarity=0.277 Sum_probs=60.3
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccC
Q 008708 118 VLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEK 197 (557)
Q Consensus 118 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 197 (557)
++-.+...|+.|+.++|..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++.+...+++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4445666677777777777777777777777666 7776666656666666777776666666654433
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHH
Q 008708 198 SPLKPDQKMFHMMIYMYKKAGGYEK 222 (557)
Q Consensus 198 ~~~~~~~~~~~~l~~~~~~~g~~~~ 222 (557)
.|...+|..|..+|...|+...
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHH
Confidence 4566677777777777777554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-09 Score=107.93 Aligned_cols=243 Identities=16% Similarity=0.162 Sum_probs=150.3
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 92 WDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQI 171 (557)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 171 (557)
+.||..+|..+|.-|+..|+++.|- +|.-|.-+..+.+...++.++.+....++.+.+. .|.+.||..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 6677788888888888888888887 8887777776777778888887777777766554 567778888
Q ss_pred HHHHHHHcCCHHH---HHHHHHHhHhc------------------cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 172 ILKLFVEANKFKE---AEEVFMTLLDE------------------EKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALM 230 (557)
Q Consensus 172 ll~~~~~~g~~~~---A~~~~~~~~~~------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 230 (557)
|..+|...|++.. .++.+..+... ...+.-||. .+++....-.|-++.+++++..+
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHHHHHHHHhhC
Confidence 8888888887654 22212111110 001111221 22333334445555566555544
Q ss_pred HHcCC-CCCHHHHHHHhcc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008708 231 AERGV-QQSTVTYNSLMSF-ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKA 308 (557)
Q Consensus 231 ~~~~~-~~~~~~~~~ll~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 308 (557)
..... .|..+ ++.. ...+....++........-.|+..+|..++..-...|+.+.|..++..|.+.|++.+.+-
T Consensus 166 Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 166 PVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred CcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 32211 11111 1222 223344444444444332257777777777777778888888888888888877777776
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 309 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD 356 (557)
Q Consensus 309 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (557)
|..|+-+ .++...+..+++-|...|+.|+..|+..-+..+..+|.
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 6666544 66777777777777777888887777776666666444
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-06 Score=82.87 Aligned_cols=367 Identities=13% Similarity=0.173 Sum_probs=187.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------------------hHHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR----------------------YKNAEAIFR 155 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------------------~~~A~~~~~ 155 (557)
.|++|.+-|.+.|.+++|..+|++.... ..++.-+..+.++|+.-.. ++-.+.-|+
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 4566777777777777777777776654 2344555556665543211 111111222
Q ss_pred HHHhCCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCC--CCCCHHHHHHHHHHHHHcCCHHH
Q 008708 156 RMQSSGP-----------RPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSP--LKPDQKMFHMMIYMYKKAGGYEK 222 (557)
Q Consensus 156 ~m~~~~~-----------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 222 (557)
.+....+ +-+...|..-.. ...|+..+-...|.+++..-... ...-...|..+...|-..|+++.
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 2221110 001111111111 12355666666676666531111 11123567888888888999999
Q ss_pred HHHHHHHHHHcCCCCCHH---HHHHHhc---ccCCHHHHHHHHHHHHHCC-----------CCC------CHHHHHHHHH
Q 008708 223 ARKLFALMAERGVQQSTV---TYNSLMS---FETNYKEVSKIYDQMQRAG-----------LQP------DVVSYALLIN 279 (557)
Q Consensus 223 A~~~~~~~~~~~~~~~~~---~~~~ll~---~~~~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~li~ 279 (557)
|..+|++..+...+--.. +|..... -..+++.|.++.+.....- .++ +...|...+.
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 999998887754332211 1211111 1345666666665543210 011 2233555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHH---cC
Q 008708 280 AYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDI-CSYTTMLSAYVN---AS 355 (557)
Q Consensus 280 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~g 355 (557)
.--..|-++....+|+++++..+. ++...-.....+-.+.-++++.+++++-...-..|+. ..|+..+.-+.+ ..
T Consensus 486 leEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~ 564 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGT 564 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCC
Confidence 556667777777788877765432 2222222222334445566666666655444333443 245544444433 23
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHC---------------------CCCcCHH
Q 008708 356 DMEGAEKFFRRLKQDGFVPNVITYGTLIK--GYAKVNNLEKMMEIYDKMRVN---------------------GIKPNQT 412 (557)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~--~~~~~g~~~~a~~~~~~m~~~---------------------~~~p~~~ 412 (557)
.++.|..+|++.++ |.+|...-+-.|+- .=-+.|....|+.+|+++... |++.+..
T Consensus 565 klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~ 643 (835)
T KOG2047|consen 565 KLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTRE 643 (835)
T ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHH
Confidence 56677777777666 44443322211211 112345555566665554321 2222222
Q ss_pred HHHHHHH----------------HHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 008708 413 IFTTIMD----------------AYGKNKDFDSAVVWYKEMESCGFPP--DQKAKNILLSLAKTADERNEANELLGN 471 (557)
Q Consensus 413 ~~~~l~~----------------~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~ 471 (557)
+|...|. .=.+.|..+.|..++....+. .+| +...|...-..=.++|+-+...++++.
T Consensus 644 iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGnedT~keMLRi 719 (835)
T KOG2047|consen 644 IYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNEDTYKEMLRI 719 (835)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3322222 224567777887777766552 244 446777777788888887777777754
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.8e-08 Score=89.26 Aligned_cols=307 Identities=12% Similarity=0.107 Sum_probs=207.1
Q ss_pred CCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC
Q 008708 127 YAPSVVSHTALMEAYGR--GGRYKNAEAIFRRMQSSG-PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD 203 (557)
Q Consensus 127 ~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 203 (557)
.+|+..+...-+.+++. .++...|...+-.+.... .+-|......+.+.+...|+.++|+..|++..- ..|+
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~-----~dpy 264 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC-----ANPD 264 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh-----CChh
Confidence 34444444444444333 455555555554443332 445667777888888888888888888888752 2233
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008708 204 Q-KMFHMMIYMYKKAGGYEKARKLFALMAERGVQ-Q-STVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINA 280 (557)
Q Consensus 204 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 280 (557)
. .......-.+...|+++....+...+....-. . ..+.-..++....++..|+.+-+..++... .+...|-.-...
T Consensus 265 ~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~l 343 (564)
T KOG1174|consen 265 NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRL 343 (564)
T ss_pred hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHH
Confidence 2 22223334455677777777777666543200 0 111111222234667777777777776542 255666666778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-HcCCHH
Q 008708 281 YGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTML-SAYV-NASDME 358 (557)
Q Consensus 281 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~ 358 (557)
+...+++++|.-.|+..+... +.+..+|..|+.+|...|.+.+|..+-+...+. .+.+..+...+. ..|. ...--+
T Consensus 344 L~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 344 LIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred HHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHH
Confidence 889999999999999987652 456789999999999999999998877765543 133555555442 2222 223357
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008708 359 GAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 359 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
+|.++++...... |.-....+.+...|...|..+.++.++++.+.. .||....+.+.+.+...+.+++|...|..++
T Consensus 422 KAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 422 KAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 8999999877653 334567788899999999999999999998874 7899999999999999999999999999998
Q ss_pred hCCCCCCH
Q 008708 439 SCGFPPDQ 446 (557)
Q Consensus 439 ~~~~~p~~ 446 (557)
. +.|+.
T Consensus 499 r--~dP~~ 504 (564)
T KOG1174|consen 499 R--QDPKS 504 (564)
T ss_pred h--cCccc
Confidence 7 44543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-07 Score=93.33 Aligned_cols=129 Identities=15% Similarity=0.151 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 273 SYALLINAYGKARREEEALAVFEEMLDAGVRPT-HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAY 351 (557)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (557)
++..+...|...|++++|+.++++.++. .|+ +..|..-...+-+.|++.+|...++...... .-|-..=+-.+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHH
Confidence 4456677788888888888888888876 344 5677777888888888888888888887654 22555556667778
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 352 VNASDMEGAEKFFRRLKQDGFVPNVIT--------YGTLIKGYAKVNNLEKMMEIYDKMRV 404 (557)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~~~~p~~~~--------~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (557)
.++|+.++|.+++......+..|-... ..-.+.+|.+.|++..|++.|..+.+
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888888888888888776553332211 24456778888888888877766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-06 Score=82.50 Aligned_cols=199 Identities=10% Similarity=0.117 Sum_probs=111.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----------
Q 008708 273 SYALLINAYGKARREEEALAVFEEMLDAGVRPT---HKAYNILLDAFAISGMVDQARTVFKCMRRDRCS----------- 338 (557)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------- 338 (557)
.|..+...|-..|+++.|..+|++..+...+.- ..+|..-..+-.+..+++.|+++.+........
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 456666677777777777777777665432211 224444445555566667777666654322111
Q ss_pred C------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-H
Q 008708 339 P------DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-Q 411 (557)
Q Consensus 339 ~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~ 411 (557)
+ +...|...+...-..|-++....+|+++.+..+. ++...-.....+-...-++++.++|++-+..=-.|+ .
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 1 1223444444444556666677777777665433 222222222333444556677777766554322344 4
Q ss_pred HHHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHH-HHH-HHHHHHhhcCCHHHHHHHHHhcC
Q 008708 412 TIFTTIMDAYGK---NKDFDSAVVWYKEMESCGFPPDQK-AKN-ILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 412 ~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~-~~~-~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
..|+..+.-+.+ .-+++.|..+|+++++ |.+|... ++. .....=.+.|-...|..+++++.
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 567776665543 3467889999999988 6676553 322 22233356688888888887754
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-11 Score=78.53 Aligned_cols=47 Identities=38% Similarity=0.754 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGY 386 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 386 (557)
|..+||.+|.+|++.|++++|.++|++|.+.|++||..||+.++++|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.2e-11 Score=77.92 Aligned_cols=50 Identities=34% Similarity=0.785 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 008708 374 PNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK 423 (557)
Q Consensus 374 p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 423 (557)
||..+|+.++.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67778888888888888888888888888888888888888888877764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8e-07 Score=79.81 Aligned_cols=384 Identities=13% Similarity=0.102 Sum_probs=240.0
Q ss_pred HHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008708 67 LVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR 146 (557)
Q Consensus 67 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 146 (557)
+..+...+++.-|..++++....+.- -...+-..+..++.+.|++++|...+..+.+.. .|+...+-.|.-++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 44455556777788888776654421 122444568889999999999999999988754 5677888888888888999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 147 YKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKL 226 (557)
Q Consensus 147 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 226 (557)
+.+|..+..+. +.++-.-..++....+.|+-++-..+.+.+.+ ...---.|.......-.+.+|+++
T Consensus 107 Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD--------~~EdqLSLAsvhYmR~HYQeAIdv 173 (557)
T KOG3785|consen 107 YIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD--------TLEDQLSLASVHYMRMHYQEAIDV 173 (557)
T ss_pred HHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh--------hHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999887664 33666777788888888998888887777742 223445566666667789999999
Q ss_pred HHHHHHcCCCCCHHHHHHHhcc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH------
Q 008708 227 FALMAERGVQQSTVTYNSLMSF----ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEE------ 296 (557)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~ll~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------ 296 (557)
|......+ |.....|..+.. ..-++-+.++++-..+.- +-+....|..+....+.=+-..|..-.+.
T Consensus 174 YkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~ 250 (557)
T KOG3785|consen 174 YKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNID 250 (557)
T ss_pred HHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc
Confidence 99998753 344444443332 233455555655555542 22333333333222222111111111111
Q ss_pred --------HHHcC------------CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 297 --------MLDAG------------VRP-----THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAY 351 (557)
Q Consensus 297 --------~~~~~------------~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (557)
+.+.+ +-| -+..-..|+--|.+.+++.+|..+.+++. +.++.-|-.-.-.+
T Consensus 251 ~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~ 326 (557)
T KOG3785|consen 251 QEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVF 326 (557)
T ss_pred ccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHH
Confidence 11111 011 11233445556788999999998887665 22333333222233
Q ss_pred HHcC-------CHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 008708 352 VNAS-------DMEGAEKFFRRLKQDGFVPNVI-TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK 423 (557)
Q Consensus 352 ~~~g-------~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 423 (557)
+..| ...-|.+.|+-.-+++..-|.. --.++..++.-..++++.+-++..+... +..|....-.+..+++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHH
Confidence 3333 3455666666554443332221 2234556666677899999988888765 33344444457889999
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 424 NKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 424 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
.|.+.+|.++|-......++.+......|.+.|.+.+.++.|..++-+..
T Consensus 406 tgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred hcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 99999999999887654444344445667788999999999998886654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.1e-08 Score=82.96 Aligned_cols=198 Identities=13% Similarity=0.056 Sum_probs=168.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 273 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV 352 (557)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 352 (557)
+...|.-.|...|+...|..-+++.++.. +.+..++..+...|.+.|..+.|.+.|++..... +.+....|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45667888999999999999999999874 4456689999999999999999999999988764 346678899999999
Q ss_pred HcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 008708 353 NASDMEGAEKFFRRLKQDG-FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAV 431 (557)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 431 (557)
..|++++|...|++..... ..--..+|..++-+..+.|+.+.|...|++.++.. +......-.+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999988753 23345688899999999999999999999999864 344677888888999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCC
Q 008708 432 VWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNH 474 (557)
Q Consensus 432 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 474 (557)
.+++.....+ .++...+...++...+.|+.+.+.++-..+.+
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999998865 58899999999999999999999887766654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.5e-08 Score=90.23 Aligned_cols=217 Identities=12% Similarity=0.088 Sum_probs=127.4
Q ss_pred chHHHHHHHHHHHhcCCCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008708 75 KWNVVSEVLEWLRIQSWWDF--NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEA 152 (557)
Q Consensus 75 ~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 152 (557)
..+.+..-+..+.......+ ....|..+...|.+.|+.++|...|++..+.. +.+..+|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34445555555554332211 13457777888888888888888888888764 4467888888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 153 IFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 153 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
.|++..+..+. +..++..+..++...|++++|.+.|+..++. .|+..........+...++.++|...|.+...
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88888776443 5667777777788888888888888888753 23222122222233445678888888866543
Q ss_pred cCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCC---C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008708 233 RGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAG---L---QPDVVSYALLINAYGKARREEEALAVFEEMLDA 300 (557)
Q Consensus 233 ~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~---~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 300 (557)
.. .++...+.......++...+ ..+..+.+.. + +.....|..+...+.+.|++++|+..|++..+.
T Consensus 194 ~~-~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 194 KL-DKEQWGWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred hC-CccccHHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 21 22222222211223333322 2333332210 0 011234555666666666666666666666554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.1e-08 Score=90.36 Aligned_cols=171 Identities=12% Similarity=0.052 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 349 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 349 (557)
+...|+.+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...|+...+.. |+.........
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~ 173 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLY 173 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 34556666666666666666666666665532 2234455556666666666666666666665542 22111111111
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---C--CCc-CHHHHHHHHHHHHh
Q 008708 350 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN---G--IKP-NQTIFTTIMDAYGK 423 (557)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~--~~p-~~~~~~~l~~~~~~ 423 (557)
.+...+++++|...|.+..... .|+...+ .......|+...+ +.+..+.+. . +.| ....|..+...+.+
T Consensus 174 l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~ 248 (296)
T PRK11189 174 LAESKLDPKQAKENLKQRYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLS 248 (296)
T ss_pred HHHccCCHHHHHHHHHHHHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 2234456666666665544321 2222211 1222234444333 233333321 0 011 23467777777777
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHH
Q 008708 424 NKDFDSAVVWYKEMESCGFPPDQKAK 449 (557)
Q Consensus 424 ~g~~~~A~~~~~~m~~~~~~p~~~~~ 449 (557)
.|++++|...|++..+.+ +|+..-+
T Consensus 249 ~g~~~~A~~~~~~Al~~~-~~~~~e~ 273 (296)
T PRK11189 249 LGDLDEAAALFKLALANN-VYNFVEH 273 (296)
T ss_pred CCCHHHHHHHHHHHHHhC-CchHHHH
Confidence 777888887777777643 3344433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-07 Score=80.47 Aligned_cols=131 Identities=19% Similarity=0.217 Sum_probs=97.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 178 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 178 (557)
...|.-.|.+.|++..|..-+++.++.. +.+..+|..+...|-+.|..+.|.+.|++..+..+. +..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 4457777888888888888888888774 335667888888888888888888888888776544 66677777777788
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008708 179 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 233 (557)
.|++++|.+.|++++..+ ....-..+|..+.-+..+.|+++.|...|++.++.
T Consensus 116 qg~~~eA~q~F~~Al~~P--~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 116 QGRPEEAMQQFERALADP--AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred CCChHHHHHHHHHHHhCC--CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 888888888888887632 33334456777777777888888888888777765
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.1e-06 Score=81.39 Aligned_cols=384 Identities=14% Similarity=0.100 Sum_probs=206.8
Q ss_pred hccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008708 72 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAE 151 (557)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 151 (557)
.-+++++|.+.+.-+.+-. +.|...+.-|.-.=++.|+++..........+.. +.....|..++.++.-.|+...|.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555665555554433 2344555544444455555555555555554442 223455666666666667777777
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 152 AIFRRMQSSG-PRPSALTYQIIL------KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKAR 224 (557)
Q Consensus 152 ~~~~~m~~~~-~~~~~~~~~~ll------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 224 (557)
.+++...+.. -.|+...|.... ....+.|.++.|.+.+..-. ..+......-..-...+.+.+++++|.
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e----~~i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE----KQIVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh----hHHHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 7766665543 234444443322 23445566666666554432 111112222233455666777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHhc-ccCCHH---HHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008708 225 KLFALMAERGVQQSTVTYNSLMS-FETNYK---EVS-KIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 299 (557)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~---~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 299 (557)
.++..++.++ ||...|...+. +.|.+. ++. .+|....+. ++.....-..=++......-.+..-.++..+.+
T Consensus 240 ~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 240 KVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred HHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 7777776653 45554444332 233221 111 333333222 110000000011111112223344455556666
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCC----------CCCCHHH--HHHHHHHHHHcCCHHHHHHH
Q 008708 300 AGVRPTHKAYNILLDAFAISGMVDQARTVFKCMR----RDR----------CSPDICS--YTTMLSAYVNASDMEGAEKF 363 (557)
Q Consensus 300 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~----------~~~~~~~--~~~li~~~~~~g~~~~A~~~ 363 (557)
.|+++ ++..+...|-.-...+-..++...+. ..+ -+|.+.. +..++..+-+.|+++.|..+
T Consensus 317 Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~y 393 (700)
T KOG1156|consen 317 KGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEY 393 (700)
T ss_pred cCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 66543 23333333322111111111111111 111 1455544 45677889999999999999
Q ss_pred HHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 008708 364 FRRLKQDGFVPNV-ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 442 (557)
Q Consensus 364 ~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 442 (557)
++....+ .|+. ..|..-.+.+...|.+++|..++++..+.+ .||...-..-+.-..++++.++|..+.......|.
T Consensus 394 Id~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 394 IDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 9998876 4554 467777789999999999999999999875 56666665777777899999999999998887664
Q ss_pred CC--C---HH-HHHHHH--HHHhhcCCHHHHHHHHHh
Q 008708 443 PP--D---QK-AKNILL--SLAKTADERNEANELLGN 471 (557)
Q Consensus 443 ~p--~---~~-~~~~l~--~~~~~~g~~~~a~~~~~~ 471 (557)
.. + .. .|-.+- .+|.+.|++..|.+-+..
T Consensus 471 ~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 471 GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 11 1 11 233222 478888888777755533
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-06 Score=85.77 Aligned_cols=199 Identities=12% Similarity=0.043 Sum_probs=102.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGY-APS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 173 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 173 (557)
...|..+...+...|+.+.+.+.+....+... .++ ..........+...|++++|.+.+++.....+. +...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-h
Confidence 34455555566666666666665555444321 111 112222333455667777777777776665332 3333331 1
Q ss_pred HHHHH----cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhccc
Q 008708 174 KLFVE----ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFE 249 (557)
Q Consensus 174 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 249 (557)
..+.. .+....+.+.+... ....+........+...+...|++++|...+++..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------------- 144 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--------------- 144 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------
Confidence 12222 23333333333321 11222223344455556666677777776666666541
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHHcCCHHHHH
Q 008708 250 TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGV-RPTH--KAYNILLDAFAISGMVDQAR 326 (557)
Q Consensus 250 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~g~~~~A~ 326 (557)
+.+...+..+..++...|++++|..++++...... .|+. ..|..+...+...|++++|.
T Consensus 145 ------------------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 145 ------------------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred ------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 12344556666667777777777777776655321 1221 23445666666777777777
Q ss_pred HHHHHHH
Q 008708 327 TVFKCMR 333 (557)
Q Consensus 327 ~~~~~~~ 333 (557)
.++++..
T Consensus 207 ~~~~~~~ 213 (355)
T cd05804 207 AIYDTHI 213 (355)
T ss_pred HHHHHHh
Confidence 7777664
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5e-07 Score=85.78 Aligned_cols=396 Identities=12% Similarity=0.058 Sum_probs=217.2
Q ss_pred hhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChH
Q 008708 70 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYK 148 (557)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~ 148 (557)
....++++.|...|...+...+ .|...|..-..+|...|++++|++=-.+-.+. .|+ ...|.....++.-.|+++
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hcccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 4456777777777777776653 46777777777788888877777766555554 344 557777777777777888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC-------
Q 008708 149 NAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFK---EAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG------- 218 (557)
Q Consensus 149 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 218 (557)
+|+..|.+-++..+. +...+.-+..++....... .--.++..+...+..........|..++..+-+.-
T Consensus 88 eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 887777776665322 4555555555541110000 00001111100000000000011122211111100
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHhccc-CCHH----HHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 008708 219 GYEKARKLFALMAERGVQQSTVTYNSLMSFE-TNYK----EVSKIYDQMQR-AGLQPDVVSYALLINAYGKARREEEALA 292 (557)
Q Consensus 219 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~----~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~ 292 (557)
..+......-.+...+.. ....-....... .... ........+.. .....-..-...+.++..+..+++.|++
T Consensus 167 ~d~r~m~a~~~l~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDEL-LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred ccHHHHHHHHHHhcCccc-cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 000000000000000000 000000000000 0000 00000000000 0000011224567777778888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-------HHHHHHHHHcCCHHHHHHHHH
Q 008708 293 VFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSY-------TTMLSAYVNASDMEGAEKFFR 365 (557)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~li~~~~~~g~~~~A~~~~~ 365 (557)
.+....+.. .+..-++....+|...|.+......-....+.|.. ...-| ..+..+|.+.++++.|+..|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 888887753 44445566666788888777776666655544321 11122 223345666777888888888
Q ss_pred HHHhCCCCCCHHH-------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008708 366 RLKQDGFVPNVIT-------------------------YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420 (557)
Q Consensus 366 ~m~~~~~~p~~~~-------------------------~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 420 (557)
+.+.....|+..+ ...-+..+.+.|++..|+..|.++++.. +-|...|..-.-+
T Consensus 323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac 401 (539)
T KOG0548|consen 323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAAC 401 (539)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHH
Confidence 7765544443322 1223566778899999999999999875 6678999999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC
Q 008708 421 YGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTADERNEANELLGNFNHPNN 477 (557)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (557)
|.+.|.+..|+.-.+..++. .|+ ...|..-+.++....+++.|.+.+.+..+.++
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999998888874 444 35666667778888899999999998876664
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.5e-06 Score=78.81 Aligned_cols=397 Identities=14% Similarity=0.106 Sum_probs=226.9
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH---
Q 008708 61 DLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTAL--- 137 (557)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l--- 137 (557)
...+..+.+....+.+++|.+....+.... +.+...+..-+-++.+.++|++|+.+.+.-.. ..+++..
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fE 84 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFE 84 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHH
Confidence 456777788888899999999999988765 45677888889999999999999976654332 1222222
Q ss_pred -HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCC-----------------
Q 008708 138 -MEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSP----------------- 199 (557)
Q Consensus 138 -i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~----------------- 199 (557)
.-+..+.++.++|+..++-. -+.+..+...-...+.+.|++++|.++|+.+.+.....
T Consensus 85 KAYc~Yrlnk~Dealk~~~~~----~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLKGL----DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ 160 (652)
T ss_pred HHHHHHHcccHHHHHHHHhcc----cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Confidence 23445789999999998832 12244577777788999999999999999996532100
Q ss_pred --------CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCC------CH----HHHHHHhcccCCH
Q 008708 200 --------LKP--DQKMFHMMIYMYKKAGGYEKARKLFALMAERG-------VQQ------ST----VTYNSLMSFETNY 252 (557)
Q Consensus 200 --------~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~------~~----~~~~~ll~~~~~~ 252 (557)
..| +-..+....-.+...|++.+|+++++.....+ -.. .. +-..-++...|+.
T Consensus 161 ~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 161 VQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 011 11222233445556677777777777763211 000 00 0111122235777
Q ss_pred HHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHH-HHHHHHHHHHHcC-------C---CCCHHHH-HHHHHHH
Q 008708 253 KEVSKIYDQMQRAGLQPDVV----SYALLINAYGKARREE-EALAVFEEMLDAG-------V---RPTHKAY-NILLDAF 316 (557)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~-~A~~~~~~~~~~~-------~---~~~~~~~-~~li~~~ 316 (557)
.+|..+|..+++..+ +|.. .-|.|+..-....-++ .++..++...... + ....... +.++..|
T Consensus 241 ~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777766543 2332 2222222211111111 1111111111000 0 0001111 2222222
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008708 317 AISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV--NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEK 394 (557)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 394 (557)
. +..+.+.++-.... +..|. ..+.+++..+. +......+.+++...-+....-...+.-.++......|+++.
T Consensus 320 t--nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 320 T--NKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred h--hhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence 2 22233333332222 11233 33444444332 223477788888777665322234566677788889999999
Q ss_pred HHHHHH--------HHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCH----HHHHHHHHHHhhcC
Q 008708 395 MMEIYD--------KMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESC--GFPPDQ----KAKNILLSLAKTAD 460 (557)
Q Consensus 395 a~~~~~--------~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~----~~~~~l~~~~~~~g 460 (557)
|.+++. .+.+.+. .+.+...+...+.+.++-+.|..++.+.+.. .-.+.. .++.-+...-.+.|
T Consensus 395 A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 999999 5544433 3456677777888888888888888777531 011221 34444455556789
Q ss_pred CHHHHHHHHHhcCCCCC
Q 008708 461 ERNEANELLGNFNHPNN 477 (557)
Q Consensus 461 ~~~~a~~~~~~~~~~~~ 477 (557)
+.++|..+++++.+.++
T Consensus 473 ~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 473 NEEEASSLLEELVKFNP 489 (652)
T ss_pred chHHHHHHHHHHHHhCC
Confidence 99999999999886554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-05 Score=79.80 Aligned_cols=370 Identities=15% Similarity=0.090 Sum_probs=244.8
Q ss_pred hHHHHHHH-HHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHH
Q 008708 60 KDLVLGTL-VRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS-VVSHTAL 137 (557)
Q Consensus 60 ~~~~~~~l-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l 137 (557)
+..++..+ ..+...|++..+-+.|+....... -....|+.+...|...|.-..|..+++.-....-.|+ ...+-..
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~--~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF--GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh--hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 33444333 356667889999999988876531 2356788999999999999999999988765532243 4444444
Q ss_pred HHHHHh-cCChHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHhHhccCCCCC
Q 008708 138 MEAYGR-GGRYKNAEAIFRRMQSS--GP--RPSALTYQIILKLFVEA-----------NKFKEAEEVFMTLLDEEKSPLK 201 (557)
Q Consensus 138 i~~~~~-~g~~~~A~~~~~~m~~~--~~--~~~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~ 201 (557)
-..|.+ .+..+++++...+.... +. ...+..|..+.-+|... ....++.+.+++.++.+ +
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d----~ 475 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD----P 475 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC----C
Confidence 444444 57888888888777662 11 12344555555454422 23456778888887643 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 008708 202 PDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNS---LMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLI 278 (557)
Q Consensus 202 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 278 (557)
.|+.+...+.--|+..++++.|.+...+..+.+...+...|.. ++++.+++.+|+.+.+.....-.. |-.....-+
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~ 554 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKI 554 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhh
Confidence 3334444455567888999999999999998766666666654 456788999999888766543110 000000001
Q ss_pred HHHHhcCCHHHHHHHHHHHH---------------------------------------------------HcC------
Q 008708 279 NAYGKARREEEALAVFEEML---------------------------------------------------DAG------ 301 (557)
Q Consensus 279 ~~~~~~g~~~~A~~~~~~~~---------------------------------------------------~~~------ 301 (557)
..-...++.++++.....++ ..+
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 11111222222222111110 000
Q ss_pred ---CC--CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008708 302 ---VR--PT------HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD 370 (557)
Q Consensus 302 ---~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (557)
+. |+ ...|......+.+.+..++|...+.+..... +.....|......+...|..++|.+.|......
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 00 11 1124455566777788888887777766542 445667777778888999999999999998887
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 371 GFVPNVITYGTLIKGYAKVNNLEKMME--IYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 371 ~~~p~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+ |.++.+..++..++.+.|+..-|.. ++..+.+.+ +.+...|-.+...+.+.|+.+.|...|....+
T Consensus 714 d-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 714 D-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred C-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 5 5567788999999999998888887 999999876 56799999999999999999999999998876
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-06 Score=83.33 Aligned_cols=202 Identities=12% Similarity=0.014 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHH
Q 008708 271 VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SPDI--CSYTTM 347 (557)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~~~l 347 (557)
......+...+...|++++|...+++..+.. +.+...+..+..++...|++++|..++++...... .++. ..|..+
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 3455567778899999999999999999864 44567888899999999999999999999886532 2332 345678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHHcCCHHHHHHH--H-HHHHHCC-CCcCHHHHHHHHH
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQDGF-VPNVITY-G--TLIKGYAKVNNLEKMMEI--Y-DKMRVNG-IKPNQTIFTTIMD 419 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~a~~~--~-~~m~~~~-~~p~~~~~~~l~~ 419 (557)
...+...|++++|..++++...... .+..... + .++.-+...|....+.+. + ....... .............
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~ 272 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAAL 272 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 8899999999999999999865432 1222211 1 333344445543333332 1 1111110 0111222235667
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCC-------C-CHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 420 AYGKNKDFDSAVVWYKEMESCGFP-------P-DQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~~~~-------p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
++...|+.+.|..+++.+...... . ..........++...|+.++|.+.+....
T Consensus 273 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 273 ALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 788999999999999988652211 0 11122233346778999999999998765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-06 Score=75.15 Aligned_cols=199 Identities=14% Similarity=0.146 Sum_probs=124.3
Q ss_pred CCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 57 PLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTA 136 (557)
Q Consensus 57 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 136 (557)
.++...+.+++.++.+-.++..|.+++..-.+..+ .+....+.|..+|....++..|...++++... .|...-|..
T Consensus 7 ~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p--~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrl 82 (459)
T KOG4340|consen 7 QIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP--RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRL 82 (459)
T ss_pred cCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHH
Confidence 34555566666666666778888888776666542 35667778888888888888888888888765 355555543
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH
Q 008708 137 -LMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL--KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM 213 (557)
Q Consensus 137 -li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 213 (557)
-...+.+.+.+..|+++...|... |+...-..-+ ....+.+++..+..+.++.-. .-+..+.+...-.
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~------en~Ad~~in~gCl 153 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS------ENEADGQINLGCL 153 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC------CCccchhccchhe
Confidence 245566778888888887776432 2221111111 223345677777777766621 2344455555666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc--cCCHHHHHHHHHHHHHCCCC
Q 008708 214 YKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF--ETNYKEVSKIYDQMQRAGLQ 268 (557)
Q Consensus 214 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~a~~~~~~~~~~~~~ 268 (557)
..+.|+++.|.+-|+...+.+--.....||..+.. .+++..|++...++...|+.
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Confidence 67788888888888877765444445556655554 35566666666666666543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.2e-06 Score=73.58 Aligned_cols=335 Identities=14% Similarity=0.121 Sum_probs=198.0
Q ss_pred hhChHHHHHHHhhhcCCCCChHHHHHHHH-HhhhccchHHHHHHHHHHHhcCCCCCCHhhHH-HHHHHHHhcCChhHHHH
Q 008708 40 EVGSAVAVLRSERTRGQPLPKDLVLGTLV-RLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFL-MLITAYGKQGDFNKAEK 117 (557)
Q Consensus 40 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~ 117 (557)
+++++++.+.+. ....+.+ ..-++++. .+....++..|...++.+.... |...-|. --...+.+.+.+..|+.
T Consensus 25 ry~DaI~~l~s~-~Er~p~~-rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 25 RYADAIQLLGSE-LERSPRS-RAGLSLLGYCYYRLQEFALAAECYEQLGQLH---PELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred hHHHHHHHHHHH-HhcCccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHHHHHHhcccHHHHH
Confidence 577888888742 3333333 23344443 4456678889999999887654 3333333 24667788899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHH--HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhc
Q 008708 118 VLSFMNKKGYAPSVVSHTALM--EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDE 195 (557)
Q Consensus 118 ~~~~~~~~g~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 195 (557)
+...|... |+...-..-+ ......+++..+..+.++.... .+..+.+.......+.|+++.|.+-|+..++
T Consensus 100 V~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlq- 172 (459)
T KOG4340|consen 100 VAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQ- 172 (459)
T ss_pred HHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHHHHh-
Confidence 99888753 2222211112 2334567888888888876432 3555666666667789999999999999986
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc-------ccCCHHHHHHHHHHHHHCCCC
Q 008708 196 EKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS-------FETNYKEVSKIYDQMQRAGLQ 268 (557)
Q Consensus 196 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~-------~~~~~~~a~~~~~~~~~~~~~ 268 (557)
-+|..|- ..||..+ +..+.|+++.|++...++.++|++..+. ++.-+. ..|+. .. |...
T Consensus 173 -vsGyqpl-lAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDvrsvgNt---~~----lh~S--- 238 (459)
T KOG4340|consen 173 -VSGYQPL-LAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDVRSVGNT---LV----LHQS--- 238 (459)
T ss_pred -hcCCCch-hHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCchhcccch---HH----HHHH---
Confidence 4565553 3555444 4557789999999999999988653221 111000 01110 00 0000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 269 PDVVSYALLINAYGKARREEEALAVFEEMLDA-GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 347 (557)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 347 (557)
.-+..+|.-...+.+.|+++.|.+.+-+|.-+ ....|++|...+.-.= ..+++....+-+.-+.... +-...||..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHH
Confidence 01234555556677888999998888887432 2345666665544222 2344444454455555443 3455788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQDGF-VPNVITYGTLIKGYAK-VNNLEKMMEIYDKMR 403 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~ 403 (557)
+-.|++..-++.|-+++.+-..... -.+...|+ |++++.. .-..+++.+-+..+.
T Consensus 317 LllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 8889998888888887764222111 12333333 3444433 345666666555544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-05 Score=89.12 Aligned_cols=342 Identities=12% Similarity=0.046 Sum_probs=210.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCC---CCCC--HHHHHHHHHH
Q 008708 139 EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSP---LKPD--QKMFHMMIYM 213 (557)
Q Consensus 139 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~--~~~~~~l~~~ 213 (557)
..+...|++..+..++..+.......++.........+...|++++|...+..+.+.-... ..+. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 3445567877777777665211111122223344455667899999999988775421110 0111 1223334556
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH----HHHH---HhcccCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHH
Q 008708 214 YKKAGGYEKARKLFALMAERGVQQSTV----TYNS---LMSFETNYKEVSKIYDQMQRA----GLQ-PDVVSYALLINAY 281 (557)
Q Consensus 214 ~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~---ll~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~ 281 (557)
+...|+++.|...++.....-...+.. ..+. .....|++++|...+++.... +.. +...++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 678999999999999887632222211 1111 112368999999888877642 111 1123456677788
Q ss_pred HhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHH
Q 008708 282 GKARREEEALAVFEEMLDA----GVR--P-THKAYNILLDAFAISGMVDQARTVFKCMRRD--RCSP--DICSYTTMLSA 350 (557)
Q Consensus 282 ~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~--~~~~~~~li~~ 350 (557)
...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 9999999999998887542 211 1 2234555666777889999999999887543 1112 23445556678
Q ss_pred HHHcCCHHHHHHHHHHHHhC--CCCCCHH--H--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHH
Q 008708 351 YVNASDMEGAEKFFRRLKQD--GFVPNVI--T--YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN---QTIFTTIMDAY 421 (557)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~--~~~p~~~--~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~ 421 (557)
+...|++++|...+...... ....... . ....+..+...|+.+.|..++........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 88999999999999887542 1111111 1 11123445568899999998877553211111 11244567788
Q ss_pred HhcCChhHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCCC
Q 008708 422 GKNKDFDSAVVWYKEMES----CGFPPDQ-KAKNILLSLAKTADERNEANELLGNFNHPNNEPG 480 (557)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~----~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 480 (557)
...|++++|...+++... .|..++. .+...+..++.+.|+.++|...+.+..+.....+
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 899999999999998865 2333322 3566677789999999999999988775444333
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.5e-07 Score=88.41 Aligned_cols=326 Identities=15% Similarity=0.191 Sum_probs=196.2
Q ss_pred CHhhHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-C--------CC
Q 008708 95 NEMDFLMLIT--AYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS-G--------PR 163 (557)
Q Consensus 95 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~--------~~ 163 (557)
|+.+--.+++ .|...|+++.|.+-.+.+. +...|..|.+.|.+..+.+-|.-.+..|... | ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 3444444443 3556788888877766654 4567888888888888777776666555321 0 11
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 008708 164 PSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYN 243 (557)
Q Consensus 164 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 243 (557)
|+ .+-..+.-.....|.+++|+.+|.+... |..|=..|-..|.+++|.++-+.-....++.+...|.
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR------------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH------------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHH
Confidence 21 2222233344577888888888887742 4445556777788888887765544434444555555
Q ss_pred HHhcccCCHHHHHHHHHHH----------HHCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 008708 244 SLMSFETNYKEVSKIYDQM----------QRAG---------LQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRP 304 (557)
Q Consensus 244 ~ll~~~~~~~~a~~~~~~~----------~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 304 (557)
.-+.+.++.+.|++.|+.. .... -..|...|.-....+-..|+.+.|+.+|.....
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 6666667777777666532 1111 112444555566666677788888887776643
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 305 THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIK 384 (557)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 384 (557)
|-+++...|-.|+.++|-++-++-. |......+.+.|-..|++.+|..+|.+... |...|+
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIR 1001 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIR 1001 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHH
Confidence 4456666777888888877765433 566667788888888999888888887653 222233
Q ss_pred HHHHcC---------------CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHH--------HHHhCC
Q 008708 385 GYAKVN---------------NLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYK--------EMESCG 441 (557)
Q Consensus 385 ~~~~~g---------------~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~m~~~~ 441 (557)
.|-..+ +.-.|.++|++.- . -....+..|-++|.+.+|+++-- +++..+
T Consensus 1002 lcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~D 1073 (1416)
T KOG3617|consen 1002 LCKENDMKDRLANLALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKD 1073 (1416)
T ss_pred HHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHh
Confidence 222222 2222333333321 1 12334456777777777766531 222233
Q ss_pred CC--CCHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 008708 442 FP--PDQKAKNILLSLAKTADERNEANELLGN 471 (557)
Q Consensus 442 ~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 471 (557)
+. .|+...+.-...+....+++.|..++-.
T Consensus 1074 Ld~~sDp~ll~RcadFF~~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1074 LDAGSDPKLLRRCADFFENNQQYEKAVNLLCL 1105 (1416)
T ss_pred cCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33 3667777778888888888888877744
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.4e-05 Score=71.91 Aligned_cols=390 Identities=15% Similarity=0.070 Sum_probs=213.0
Q ss_pred hChHHHHHHHhhhcCCCCChHHHHHHH--HHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 008708 41 VGSAVAVLRSERTRGQPLPKDLVLGTL--VRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKV 118 (557)
Q Consensus 41 ~~~a~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 118 (557)
++.|+..|.. ....-|+..++.+- -.+..++++..|++=-...++..+ .=+.-|+.+..++.-.|++++|+.-
T Consensus 18 ~~~ai~~~t~---ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p--~w~kgy~r~Gaa~~~lg~~~eA~~a 92 (539)
T KOG0548|consen 18 FETAIRLFTE---AIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNP--DWAKGYSRKGAALFGLGDYEEAILA 92 (539)
T ss_pred HHHHHHHHHH---HHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC--chhhHHHHhHHHHHhcccHHHHHHH
Confidence 4456666652 22333334333322 245677889888875555554431 1256799999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH---HHHHHHHHhC---CCCCCHHHHHHHHHHHHHc-------CCHHHH
Q 008708 119 LSFMNKKGYAPSVVSHTALMEAYGRGGRYKNA---EAIFRRMQSS---GPRPSALTYQIILKLFVEA-------NKFKEA 185 (557)
Q Consensus 119 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A---~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~-------g~~~~A 185 (557)
|.+-++.. +.+...++.+..++.......+. -.++..+... .......+|..++..+-+. .+.+..
T Consensus 93 y~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~ 171 (539)
T KOG0548|consen 93 YSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRL 171 (539)
T ss_pred HHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHH
Confidence 99988874 44677888888887221111000 0111111110 0001112233333222111 111111
Q ss_pred HHHHHHhHhcc------------CCCCCC------------CH----------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 186 EEVFMTLLDEE------------KSPLKP------------DQ----------KMFHMMIYMYKKAGGYEKARKLFALMA 231 (557)
Q Consensus 186 ~~~~~~~~~~~------------~~~~~~------------~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 231 (557)
.+..-.+...+ .....| |. .-...++++..+..+++.|++.+....
T Consensus 172 m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~ 251 (539)
T KOG0548|consen 172 MKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKAL 251 (539)
T ss_pred HHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 12111111100 001111 00 124456777777888888888888877
Q ss_pred HcCCCCCHHHHHHHhcc----cCCHHHHHHHHHHHHHCCCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008708 232 ERGVQQSTVTYNSLMSF----ETNYKEVSKIYDQMQRAGLQ------PDVVSYALLINAYGKARREEEALAVFEEMLDAG 301 (557)
Q Consensus 232 ~~~~~~~~~~~~~ll~~----~~~~~~a~~~~~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 301 (557)
+.. ...+|.....+ .+.+.+....-....+.|.. .=...+..+..+|.+.++++.++..|.+.+...
T Consensus 252 el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~ 328 (539)
T KOG0548|consen 252 ELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEH 328 (539)
T ss_pred hHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh
Confidence 653 23333332221 22222222222222221111 001122234456666777788888888766543
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 008708 302 VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDI-CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYG 380 (557)
Q Consensus 302 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 380 (557)
..|+. ..+....+++....+...-.+ |.. .-...-...+.+.|++..|+..|.+++... |-|...|.
T Consensus 329 Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYs 396 (539)
T KOG0548|consen 329 RTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYS 396 (539)
T ss_pred cCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHH
Confidence 33332 222233344444443333222 221 112233567788899999999999998886 77888999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 381 TLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS 454 (557)
Q Consensus 381 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 454 (557)
...-+|.+.|.+..|+.-.+..++.. ++....|..=..++....+++.|.+.|++.++. .|+..-+.--+.
T Consensus 397 NRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~ 467 (539)
T KOG0548|consen 397 NRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYR 467 (539)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 99999999999999999888888753 334566666666777788899999999999873 465544433333
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.7e-05 Score=71.29 Aligned_cols=409 Identities=14% Similarity=0.205 Sum_probs=242.6
Q ss_pred CCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 008708 55 GQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSH 134 (557)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 134 (557)
.+|.+-+.+ ..|++.......+++++.++.+... ++..+..|..-+..-.+..+++..+++|.+.+.. ..+...|
T Consensus 15 ~nP~di~sw-~~lire~qt~~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW 89 (656)
T KOG1914|consen 15 ENPYDIDSW-SQLIREAQTQPIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLW 89 (656)
T ss_pred cCCccHHHH-HHHHHHHccCCHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHH
Confidence 344443433 4444444455888888888888766 3456778888888888889999999999888765 3467788
Q ss_pred HHHHHHHHhc-CChHH----HHHHHHHH-HhCCCCC-CHHHHHHHHHH---------HHHcCCHHHHHHHHHHhHhccCC
Q 008708 135 TALMEAYGRG-GRYKN----AEAIFRRM-QSSGPRP-SALTYQIILKL---------FVEANKFKEAEEVFMTLLDEEKS 198 (557)
Q Consensus 135 ~~li~~~~~~-g~~~~----A~~~~~~m-~~~~~~~-~~~~~~~ll~~---------~~~~g~~~~A~~~~~~~~~~~~~ 198 (557)
..-++--.+. |+... ..+.|+-. .+.|..+ +...|+..+.- +....+.+...++|++++..
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t--- 166 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT--- 166 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC---
Confidence 7777554432 33222 22333332 3444333 23345555543 33445677788888888732
Q ss_pred CCCCCHHHHHHHHH------HH-------HHcCCHHHHHHHHHHHHH--cCCCCCHHH---------------HHHHhcc
Q 008708 199 PLKPDQKMFHMMIY------MY-------KKAGGYEKARKLFALMAE--RGVQQSTVT---------------YNSLMSF 248 (557)
Q Consensus 199 ~~~~~~~~~~~l~~------~~-------~~~g~~~~A~~~~~~~~~--~~~~~~~~~---------------~~~ll~~ 248 (557)
+..-=...|+-... .. -+...+..|.++++++.. +|+.....+ |..++.-
T Consensus 167 Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 167 PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 11111223333211 11 112345567777766652 332211111 3222221
Q ss_pred ---------cCC--HHHHHHHHHHHHH-CCCCCCHHH-HH----HHHHHHHhcCC-------HHHHHHHHHHHHHcCCCC
Q 008708 249 ---------ETN--YKEVSKIYDQMQR-AGLQPDVVS-YA----LLINAYGKARR-------EEEALAVFEEMLDAGVRP 304 (557)
Q Consensus 249 ---------~~~--~~~a~~~~~~~~~-~~~~~~~~~-~~----~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~ 304 (557)
.+. ...+.=++++... .+..|+... +. .....+...|+ -+++..+++.....-...
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~ 326 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE 326 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 011 1112222332221 223333211 01 11122333343 345566666554432223
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHH
Q 008708 305 THKAYNILLDAFAISG---MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVP-NVITYG 380 (557)
Q Consensus 305 ~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~ 380 (557)
+..+|..+.+---..- ..+....++++........-..+|...++.-.+..-+..|..+|.++.+.+..+ +..+++
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~ 406 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA 406 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH
Confidence 3334444333211111 255556666666544222233567888888888889999999999999987666 778888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhh
Q 008708 381 TLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ--KAKNILLSLAKT 458 (557)
Q Consensus 381 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~ 458 (557)
+++..||. ++.+-|.++|+.-+++ +..++..-...++-+...++-..|..+|++.+..+++|+. .+|..++..=..
T Consensus 407 A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 407 ALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred HHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 88887774 7889999999987654 2344555577888888999999999999999988777765 689999999999
Q ss_pred cCCHHHHHHHHHhcC
Q 008708 459 ADERNEANELLGNFN 473 (557)
Q Consensus 459 ~g~~~~a~~~~~~~~ 473 (557)
-|+...+.++-++..
T Consensus 485 vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 485 VGDLNSILKLEKRRF 499 (656)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999998887754
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.6e-07 Score=86.23 Aligned_cols=256 Identities=15% Similarity=0.116 Sum_probs=149.9
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 141 YGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGY 220 (557)
Q Consensus 141 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 220 (557)
+.+.|.+.+|.-.|+..++..+. +...|..|....+..++-..|+..+.++++.+ +.+..+.-+|.-.|...|.-
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld----P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD----PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC----CccHHHHHHHHHHHhhhhhH
Confidence 34556666666666666665444 56666666666666666666666666666432 33455566666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HH
Q 008708 221 EKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEM-LD 299 (557)
Q Consensus 221 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 299 (557)
..|+..++..+...++ |..+... + ++...-.. ..+.....+....++|-++ ..
T Consensus 370 ~~Al~~L~~Wi~~~p~-----y~~l~~a-----------------~--~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~ 423 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK-----YVHLVSA-----------------G--ENEDFENT--KSFLDSSHLAHIQELFLEAARQ 423 (579)
T ss_pred HHHHHHHHHHHHhCcc-----chhcccc-----------------C--ccccccCC--cCCCCHHHHHHHHHHHHHHHHh
Confidence 6666666655543110 0000000 0 00000000 0111111222333333333 34
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHH
Q 008708 300 AGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN-VIT 378 (557)
Q Consensus 300 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~ 378 (557)
.+..+|+.+...|.-.|.-.|++++|+..|+..+... +-|...||-|...++...+.++|+..|++.++. .|. +.+
T Consensus 424 ~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~ 500 (579)
T KOG1125|consen 424 LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRV 500 (579)
T ss_pred CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeee
Confidence 4444677777778778888888888888888887654 446778888888888888888888888888875 444 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC---------CCCcCHHHHHHHHHHHHhcCChhHH
Q 008708 379 YGTLIKGYAKVNNLEKMMEIYDKMRVN---------GIKPNQTIFTTIMDAYGKNKDFDSA 430 (557)
Q Consensus 379 ~~~l~~~~~~~g~~~~a~~~~~~m~~~---------~~~p~~~~~~~l~~~~~~~g~~~~A 430 (557)
...|.-+|...|.+++|.+.|-.++.. ...++..+|..|=.++.-.++.+.+
T Consensus 501 RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 501 RYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred ehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 556777888888888888887766531 1112234555555555555555533
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.8e-05 Score=69.10 Aligned_cols=313 Identities=11% Similarity=0.104 Sum_probs=199.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHH
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTAL---MEAYGRGGRYKNAEAIFRRMQSSGPRPSALT-YQIILKLF 176 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~ 176 (557)
-|...+...|++..|+.-|....+. |+..|.++ ...|...|+-.-|+.-+.+.++ .+||-.. -..-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhh
Confidence 4666677777777777777776654 33333333 3456667777777777776665 3444322 12223456
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHH
Q 008708 177 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVS 256 (557)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~ 256 (557)
.+.|.++.|..-|+.+++.. |+. +....++.+.--.++-..+..+++.. ...|+...|+
T Consensus 117 lK~Gele~A~~DF~~vl~~~-----~s~---~~~~eaqskl~~~~e~~~l~~ql~s~-------------~~~GD~~~ai 175 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE-----PSN---GLVLEAQSKLALIQEHWVLVQQLKSA-------------SGSGDCQNAI 175 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC-----CCc---chhHHHHHHHHhHHHHHHHHHHHHHH-------------hcCCchhhHH
Confidence 67777777777777776432 211 11112222222222222222222221 1357788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008708 257 KIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR 336 (557)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 336 (557)
.....+.+.. +.|...|..-..+|...|++..|+.=++...+.. ..+..++-.+-..+...|+.+.++...++.++.
T Consensus 176 ~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl- 252 (504)
T KOG0624|consen 176 EMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL- 252 (504)
T ss_pred HHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-
Confidence 8888888764 3477888888999999999999998888776653 345666777778888999999999999988865
Q ss_pred CCCCHHH----HHH---HHHH------HHHcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHH
Q 008708 337 CSPDICS----YTT---MLSA------YVNASDMEGAEKFFRRLKQDGFVPNVI---TYGTLIKGYAKVNNLEKMMEIYD 400 (557)
Q Consensus 337 ~~~~~~~----~~~---li~~------~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~ 400 (557)
.|+... |-. +... ....+++.++++..+...+........ .+..+-.++...|++.+|++...
T Consensus 253 -dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 253 -DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred -CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 344322 222 2222 234567777777777776653221222 34456666777889999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 008708 401 KMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQK 447 (557)
Q Consensus 401 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 447 (557)
+.++.. +.|..++.--..+|.-...++.|+.-|+.+.+ +.++..
T Consensus 332 evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e--~n~sn~ 375 (504)
T KOG0624|consen 332 EVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE--LNESNT 375 (504)
T ss_pred HHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcccH
Confidence 888742 33488888888899888899999999999987 445443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5e-05 Score=68.33 Aligned_cols=305 Identities=12% Similarity=0.060 Sum_probs=203.8
Q ss_pred HHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCC
Q 008708 68 VRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVS-HTALMEAYGRGGR 146 (557)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~ 146 (557)
..+-..+++..|+.-|..+.+..+ .+-.++..-...|...|+-.-|+.=|.+.++. +||... --.-...+.+.|.
T Consensus 46 k~lla~~Q~sDALt~yHaAve~dp--~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGDP--NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 455666788888887777776542 23345556678899999999999999999987 577543 2334567789999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 147 YKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKL 226 (557)
Q Consensus 147 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 226 (557)
++.|..-|+..+...+. ..+ ...+..+.--.++-. .....+..+...|+...|+..
T Consensus 122 le~A~~DF~~vl~~~~s--~~~---~~eaqskl~~~~e~~-------------------~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPS--NGL---VLEAQSKLALIQEHW-------------------VLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred HHHHHHHHHHHHhcCCC--cch---hHHHHHHHHhHHHHH-------------------HHHHHHHHHhcCCchhhHHHH
Confidence 99999999999886543 211 111111111111111 122334456678999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHhc-c---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008708 227 FALMAERGVQQSTVTYNSLMS-F---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGV 302 (557)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~ll~-~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 302 (557)
...+++. .|-...+..+-. + .+....|+.=++...+..-. +..++--+...+...|+.+.++...++.++.
T Consensus 178 i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl-- 252 (504)
T KOG0624|consen 178 ITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL-- 252 (504)
T ss_pred HHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--
Confidence 9988875 343333333222 2 46677777666666554333 5566667778889999999999999998874
Q ss_pred CCCHHHH----HH---HHHHH------HHcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHH
Q 008708 303 RPTHKAY----NI---LLDAF------AISGMVDQARTVFKCMRRDRCSPDIC---SYTTMLSAYVNASDMEGAEKFFRR 366 (557)
Q Consensus 303 ~~~~~~~----~~---li~~~------~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~ 366 (557)
.||...+ .. +...+ ...++|.++++..+...+........ .+..+-.++...+++.+|++.-.+
T Consensus 253 dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 253 DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 5665432 22 22222 13456666666666666654332223 344455567778999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 008708 367 LKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 406 (557)
Q Consensus 367 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (557)
.++.. +.|..++.--..+|.-...++.|+.-|+.+.+.+
T Consensus 333 vL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 333 VLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 98764 4558899999999999999999999999999764
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.8e-07 Score=85.04 Aligned_cols=148 Identities=14% Similarity=0.137 Sum_probs=64.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 008708 281 YGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN----ASD 356 (557)
Q Consensus 281 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 356 (557)
+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.. .| .+...+..++.. .+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence 33445555555444321 233344444445555555555555555554321 12 222223332221 123
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh-hHHHHHHH
Q 008708 357 MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDF-DSAVVWYK 435 (557)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 435 (557)
+.+|..+|+++.+. .+++..+.+.+..++...|++++|.+++.+..+.+ +-++.+...++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 55555555554433 24455555555555555555555555555544332 22344444444444445554 33444555
Q ss_pred HHHh
Q 008708 436 EMES 439 (557)
Q Consensus 436 ~m~~ 439 (557)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 5444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4e-06 Score=82.37 Aligned_cols=168 Identities=15% Similarity=0.213 Sum_probs=99.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 278 INAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDM 357 (557)
Q Consensus 278 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 357 (557)
+.+......|.+|+.+++.+..... -..-|..+.+-|+..|+++.|.++|.+.- .++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 3444556667777777776665422 22345566667777777777777765432 245556677777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008708 358 EGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEM 437 (557)
Q Consensus 358 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 437 (557)
+.|.++-.+.. |.......|-.-..-+-..|++.+|.++|-.+- .|+. .|..|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 77776655433 223344445555555666677777766654432 3332 344566666666666655543
Q ss_pred HhCCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 438 ESCGFPPDQ--KAKNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 438 ~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
.|+. .|...+..-+...|++.+|++-+-+.
T Consensus 877 -----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 877 -----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred -----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 2332 46666667777777777777666544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-05 Score=85.21 Aligned_cols=337 Identities=12% Similarity=0.057 Sum_probs=208.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC------CCC--HHHHHHHHHH
Q 008708 104 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP------RPS--ALTYQIILKL 175 (557)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------~~~--~~~~~~ll~~ 175 (557)
..+...|++..+..+++.+.......+..........+...|++++|..++......-. .+. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 33445567776666666542211111222334445556678999999999987754311 111 1122233345
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CCHH--HHHH---Hh
Q 008708 176 FVEANKFKEAEEVFMTLLDEEKSPLKP-DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQ---QSTV--TYNS---LM 246 (557)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~--~~~~---ll 246 (557)
+...|+++.|...++..+......... .....+.+...+...|++++|...+++....... +... .+.. +.
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 668899999999999987521111000 1234566777888899999999999888743111 1111 1111 12
Q ss_pred cccCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHH
Q 008708 247 SFETNYKEVSKIYDQMQRA----GLQ--P-DVVSYALLINAYGKARREEEALAVFEEMLDAG--VRP--THKAYNILLDA 315 (557)
Q Consensus 247 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~ 315 (557)
...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 2368999999888776542 211 1 22345566677788899999999998875431 112 23345556677
Q ss_pred HHHcCCHHHHHHHHHHHHhC--CCCCCHH--HH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHH
Q 008708 316 FAISGMVDQARTVFKCMRRD--RCSPDIC--SY--TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV---ITYGTLIKGY 386 (557)
Q Consensus 316 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~--~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~ 386 (557)
+...|+++.|...+...... ....... .. ...+..+...|+.+.|...+............ ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 88999999999999887542 1111111 11 11224456689999999998775542211111 1245677788
Q ss_pred HHcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 008708 387 AKVNNLEKMMEIYDKMRVN----GIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESC 440 (557)
Q Consensus 387 ~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 440 (557)
...|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.++.+.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999988752 32222 345667778889999999999999999874
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.8e-05 Score=75.11 Aligned_cols=193 Identities=16% Similarity=0.182 Sum_probs=119.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc--ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008708 210 MIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS--FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARRE 287 (557)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (557)
....+...|+++.|+..|-+.... ...+-. ....|..|+.+++.++.... -..-|..+..-|...|++
T Consensus 712 wg~hl~~~~q~daainhfiea~~~--------~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFIEANCL--------IKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDF 781 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHHHhhhH--------HHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhH
Confidence 344455566666666655433210 001111 13567788888887776532 223466777888899999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 288 EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 367 (557)
Q Consensus 288 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (557)
+.|.++|-+.- .++-.|.+|.+.|+|+.|.++-.+... .......|-+-..-+-.+|++.+|.++|-.+
T Consensus 782 e~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 782 EIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred HHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 99998887542 345567889999999999888766653 2445556666666777888888888877533
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008708 368 KQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN--QTIFTTIMDAYGKNKDFDSAVVWYKEM 437 (557)
Q Consensus 368 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m 437 (557)
| .|+. .|..|-+.|..+..+++..+-- |+ ..|...+..-|...|+++.|..-|-+.
T Consensus 851 ---~-~p~~-----aiqmydk~~~~ddmirlv~k~h-----~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 851 ---G-EPDK-----AIQMYDKHGLDDDMIRLVEKHH-----GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred ---c-CchH-----HHHHHHhhCcchHHHHHHHHhC-----hhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 2 3443 3567777887777777665432 22 334445555566666666666555443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.9e-08 Score=88.69 Aligned_cols=199 Identities=13% Similarity=0.160 Sum_probs=136.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 268 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRP-THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTT 346 (557)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 346 (557)
.|.......+...+...++.+.++.-+++.......+ +.........++...|++++|++++... .+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 3455555555444444345556655555544333232 2333333334566789999999887643 36777888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008708 347 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 422 (557)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 422 (557)
.+..|.+.++++.|.+.++.|.+.+ .|.. ...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.+..++.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQID--EDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCS--CCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH
Confidence 8999999999999999999998753 4443 3334444433 34699999999998765 5788999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH-HHHHHHHHhcCCCCC
Q 008708 423 KNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADER-NEANELLGNFNHPNN 477 (557)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~ 477 (557)
..|++++|..++++....+ +-++.++..++.+....|+. +.+.+++..+....+
T Consensus 213 ~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 9999999999999988743 44567888888888888888 778888888764433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.1e-05 Score=79.12 Aligned_cols=366 Identities=15% Similarity=0.125 Sum_probs=231.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHH
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP-RPSALTYQIILK 174 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~ 174 (557)
...|..|...|+...+...|.+.|+...+.+ ..+...+..+...|++...++.|..+.-..-+..+ ..-...|....-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 4578999999999999999999999998875 34788899999999999999999998333222111 112233444555
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHh-cccCCH
Q 008708 175 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYN-SLM-SFETNY 252 (557)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll-~~~~~~ 252 (557)
.|.+.++...|..-|+..++.. +.|...|..++.+|...|++..|+++|.+....++......|- +.+ ...|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~d----PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD----PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC----chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhH
Confidence 6788899999999999998532 5678899999999999999999999999887753222222222 222 236889
Q ss_pred HHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HHcCCCCCHHHHHHHHHHHHH-
Q 008708 253 KEVSKIYDQMQRAG------LQPDVVSYALLINAYGKARREEEALAVFEEM-------LDAGVRPTHKAYNILLDAFAI- 318 (557)
Q Consensus 253 ~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~~~li~~~~~- 318 (557)
.++...+..+.... ...-..++..+...+.-.|-..+|...+++. .......+...|-.+.++|.-
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f 726 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIF 726 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence 99998887776431 1112233434444444444444444444433 222212222233222222210
Q ss_pred --cC--CH-HHHHHH-HHHHHhCC--------------------CCCCHHHHHHHHHHHHH----c----CCHHHHHHHH
Q 008708 319 --SG--MV-DQARTV-FKCMRRDR--------------------CSPDICSYTTMLSAYVN----A----SDMEGAEKFF 364 (557)
Q Consensus 319 --~g--~~-~~A~~~-~~~~~~~~--------------------~~~~~~~~~~li~~~~~----~----g~~~~A~~~~ 364 (557)
.. -+ .....+ +.+....+ ...+..+|..++..|.+ . .+...|+..+
T Consensus 727 ~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~ 806 (1238)
T KOG1127|consen 727 SQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC 806 (1238)
T ss_pred HHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence 00 00 000001 11111111 11234455555555544 1 2334677777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 008708 365 RRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP 444 (557)
Q Consensus 365 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 444 (557)
+..++.. ..+..+|+.|.-. ...|++.-+...|-+-.... +-...+|..+...+.+..+++.|...|..... +.|
T Consensus 807 KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP 881 (1238)
T KOG1127|consen 807 KKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDP 881 (1238)
T ss_pred HHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh--cCc
Confidence 7777653 4577778877766 66788888888887766542 44577888888889999999999999998887 445
Q ss_pred -CHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 008708 445 -DQKAKNILLSLAKTADERNEANELLGN 471 (557)
Q Consensus 445 -~~~~~~~l~~~~~~~g~~~~a~~~~~~ 471 (557)
+...|..........|+.-++..++..
T Consensus 882 ~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 882 LNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 445566555566677877777777765
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00063 Score=69.97 Aligned_cols=248 Identities=14% Similarity=0.181 Sum_probs=143.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC
Q 008708 139 EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 218 (557)
Q Consensus 139 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 218 (557)
..+..++-+++|..+|++. ..+..+...|+. ..+.++.|.++-++. ..+.+|+.+..+-...|
T Consensus 1056 ~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~---------n~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERC---------NEPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhh---------CChHHHHHHHHHHHhcC
Confidence 3344555666777766663 234444444443 235566666655554 13346777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008708 219 GYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFE 295 (557)
Q Consensus 219 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 295 (557)
...+|++-|-+. .|+..|..++.. .|++++..+.+....+....|.+. +.|+-+|++.++..+..+++.
T Consensus 1119 ~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~ 1190 (1666)
T KOG0985|consen 1119 LVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA 1190 (1666)
T ss_pred chHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc
Confidence 777776655332 244555555543 466777777766666665555544 356777777777766554432
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008708 296 EMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN 375 (557)
Q Consensus 296 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 375 (557)
-|+......+.+-|...|.++.|.-+|.. +..|..|...+...|++..|.+.-++. .+
T Consensus 1191 -------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns 1248 (1666)
T KOG0985|consen 1191 -------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NS 1248 (1666)
T ss_pred -------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cc
Confidence 36666666677777777777777666643 334666777777777777776655432 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008708 376 VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 376 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
..||..+-.+|...+.+.-|. |.-..+-....-...++.-|...|-+++-+.+++..+
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 556666666665555444331 2222223334445556666666666666666555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.3e-05 Score=72.47 Aligned_cols=203 Identities=9% Similarity=0.008 Sum_probs=129.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH--HHHH
Q 008708 250 TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKAR-REEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMV--DQAR 326 (557)
Q Consensus 250 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~ 326 (557)
+..++|+.++.++++..+. +..+|+....++...| ++++++..++++.+.. +.+..+|+.....+.+.|.. ++++
T Consensus 51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHH
Confidence 3445566666666554322 4445666656666666 5688888888877654 33445566555555555552 5677
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCH----HHHHHHH
Q 008708 327 TVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV---NNL----EKMMEIY 399 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~----~~a~~~~ 399 (557)
.+++++.+.. +.+..+|+....++...|+++++++.+.++++.+ +-|...|+.....+.+. |.. ++..++.
T Consensus 129 ~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 129 EFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 7777777654 4467788888888888888888888888888776 44666676666655554 222 4566666
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhc----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 008708 400 DKMRVNGIKPNQTIFTTIMDAYGKN----KDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKT 458 (557)
Q Consensus 400 ~~m~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 458 (557)
.+++... +-|...|+.+...+... ++..+|...+.+..+.+ +.+...+..|+..+..
T Consensus 207 ~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 207 IDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 6666643 44567777777777663 34456777777776532 3345567777777765
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-06 Score=82.55 Aligned_cols=219 Identities=11% Similarity=0.106 Sum_probs=166.9
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008708 248 FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQART 327 (557)
Q Consensus 248 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 327 (557)
..|++.+|.-.|+..++..+. +...|.-|.......++-..|+..+.+.++.. +.+......|.-.|...|.-..|+.
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred hcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHH
Confidence 346678888888888877544 77889999888999999999999999998864 4466788888889999999999999
Q ss_pred HHHHHHhCCCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 328 VFKCMRRDRCSP--------DICSYTTMLSAYVNASDMEGAEKFFRRLKQ-DGFVPNVITYGTLIKGYAKVNNLEKMMEI 398 (557)
Q Consensus 328 ~~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 398 (557)
.++.-+....+- +...-+. ..+.....+....++|-++.. .+..+|+.+...|.-.|.-.|++++|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 998876542110 0000000 111122233445555555544 44458888999999999999999999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 399 YDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 399 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
|+.++... +-|..+||.|...++...+.++|+..|+++++ +.|+- .....|.-.|...|.+++|...+=.+.
T Consensus 453 f~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 453 FEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999753 44688999999999999999999999999998 78876 578888999999999999998885543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-06 Score=85.63 Aligned_cols=188 Identities=13% Similarity=0.123 Sum_probs=111.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 274 YALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN 353 (557)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (557)
|..++.+|...|+..+|..+..+..+. +|++..|..+.+......-+++|.++++..... .-..+......
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~ 497 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILS 497 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhcccccc
Confidence 445566666667666666666666552 566666666666665555566666666654322 11111122223
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 008708 354 ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVW 433 (557)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 433 (557)
.+++.++.+.|+.-.+.+ +....+|-.+..+..+.++++.|.+.|....... +.+...||.+-.+|.+.|+-.+|...
T Consensus 498 ~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred chhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 566666666666655543 4455666666666666667777666666665431 22356667777777777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 434 YKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 434 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
+++..+.+ .-+...|....-.....|.+++|.+.+.++.
T Consensus 576 l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 576 LKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 77666655 3344555555555666666776666666554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-05 Score=69.99 Aligned_cols=159 Identities=11% Similarity=0.061 Sum_probs=110.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 310 NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 389 (557)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 389 (557)
..+-..+...|+-+.+..+........ +.+....+..+....+.|++..|+..+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 555566666777666666666644321 3355556667777777788888888887777654 77777888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 008708 390 NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELL 469 (557)
Q Consensus 390 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 469 (557)
|+++.|..-|.+..+.. .-++..++.+...+.-.|+++.|..++......+ .-|..+-..+..+....|++++|+.+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 88888888777777642 3346667777777777788888888777776643 335666677777777778888887776
Q ss_pred Hhc
Q 008708 470 GNF 472 (557)
Q Consensus 470 ~~~ 472 (557)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.9e-06 Score=70.62 Aligned_cols=156 Identities=14% Similarity=0.154 Sum_probs=117.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 278 INAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDM 357 (557)
Q Consensus 278 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 357 (557)
+..|...|+++.+......+.. |. ..+...++.+++...++...+.. +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4568888998887555433221 11 01223566777777777777654 56888899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 008708 358 EGAEKFFRRLKQDGFVPNVITYGTLIKGY-AKVNN--LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWY 434 (557)
Q Consensus 358 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 434 (557)
++|...|++..... +.+...+..+..++ ...|+ .++|.+++++..+.+ +.+...+..+...+.+.|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998875 56788888888864 67677 589999999999864 446788888889999999999999999
Q ss_pred HHHHhCCCCCCHHHH
Q 008708 435 KEMESCGFPPDQKAK 449 (557)
Q Consensus 435 ~~m~~~~~~p~~~~~ 449 (557)
+++++.. +|+..-.
T Consensus 168 ~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 168 QKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHhhC-CCCccHH
Confidence 9998853 5555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00014 Score=68.26 Aligned_cols=116 Identities=9% Similarity=0.029 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CC----HHHHHHHHHHHHhCCCCCCHH
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAIS---GM----VDQARTVFKCMRRDRCSPDIC 342 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~A~~~~~~~~~~~~~~~~~ 342 (557)
+..+|+...-++...|+++++++.++++++.. +.+..+|+.....+.+. |. .+.++....+++... +-|..
T Consensus 141 Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~S 218 (320)
T PLN02789 141 NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNES 218 (320)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcC
Confidence 34444444444555555555555555555443 22333444333333222 11 123444443443332 23444
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 343 SYTTMLSAYVNA----SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 388 (557)
Q Consensus 343 ~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 388 (557)
.|+.+...+... +...+|.+.+.+....+ +.+......|++.|+.
T Consensus 219 aW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 219 PWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 555555555442 23344555555554433 3345555556666553
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.6e-06 Score=82.98 Aligned_cols=229 Identities=14% Similarity=0.104 Sum_probs=151.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc
Q 008708 169 YQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF 248 (557)
Q Consensus 169 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 248 (557)
-..+...+.+.|-...|..+|+++ ..|..++.+|+..|+..+|..+..+..++ +|+...|..+...
T Consensus 401 q~~laell~slGitksAl~I~Erl------------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL------------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH------------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 344566777888888888888877 35777888888888888888888777763 4666677666665
Q ss_pred cCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 249 ETN---YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQA 325 (557)
Q Consensus 249 ~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 325 (557)
..+ ++.|.++.+.... ..-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.+++..|
T Consensus 467 ~~d~s~yEkawElsn~~sa-------rA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISA-------RAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhH-------HHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 444 4556655554422 122222223344677888888887766543 34556777777777778888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 326 RTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
...|....... +-+...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.+++|++.+.++...
T Consensus 539 v~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 539 VKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 88887776542 3345678888888888888888888888877766 445556666666677788888888888777642
Q ss_pred -CCCcCHHHHHHHHHHH
Q 008708 406 -GIKPNQTIFTTIMDAY 421 (557)
Q Consensus 406 -~~~p~~~~~~~l~~~~ 421 (557)
....|..+...++...
T Consensus 617 ~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 617 RKKYKDDEVLLIIVRTV 633 (777)
T ss_pred hhhcccchhhHHHHHHH
Confidence 1112444444444443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00022 Score=73.22 Aligned_cols=180 Identities=15% Similarity=0.091 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 288 EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 367 (557)
Q Consensus 288 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (557)
..|+..+.+.++.. ..+..+|+.|.-. ...|.+.-|...|-+-.... +.+..+|..+.-.+.+..+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence 46677777766542 2345556655444 55577777777776655432 446677888888888999999999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh----
Q 008708 368 KQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR----VNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES---- 439 (557)
Q Consensus 368 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~----~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~---- 439 (557)
.... |.|...|-.........|+.-++..+|..-- ..|-.|+...|-+.......+|+.++-+...+.+..
T Consensus 877 qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 877 QSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 8764 5667777666666667888888888887622 123345555555555556677776654444333321
Q ss_pred -----CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 008708 440 -----CGFPPDQKAKNILLSLAKTADERNEANELLGN 471 (557)
Q Consensus 440 -----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 471 (557)
.+.+-+...|.+.+....+.+.+++|.++..+
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~R 992 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATR 992 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 13344456788888888888888887766655
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.9e-05 Score=79.30 Aligned_cols=207 Identities=13% Similarity=0.173 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008708 165 SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKP---DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVT 241 (557)
Q Consensus 165 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 241 (557)
+...|...|....+.++.++|.+++++++.. .++.. -..+|.++++.-..-|.-+...++|+++.+.. +
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t--IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---d--- 1528 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT--INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---D--- 1528 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh--CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---c---
Confidence 3444555555555555555555555555531 11111 11344444544444455555555555554430 0
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 008708 242 YNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGM 321 (557)
Q Consensus 242 ~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 321 (557)
....|..|...|.+.++.++|.++++.|.+. +......|...+..+.+..+
T Consensus 1529 ----------------------------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne 1579 (1710)
T KOG1070|consen 1529 ----------------------------AYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNE 1579 (1710)
T ss_pred ----------------------------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccH
Confidence 1123334444444444444444444444432 11233344444444444444
Q ss_pred HHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008708 322 VDQARTVFKCMRRDRCS-PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYD 400 (557)
Q Consensus 322 ~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 400 (557)
-+.|..++.+.++.-.. -......-.+..-.+.|+.+++..+|+..+... |--...|+..++.-.++|+.+.+..+|+
T Consensus 1580 ~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1580 AEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence 44444444444332100 011222223333334444444444444444331 2333444444444444444444444444
Q ss_pred HHHHCCCCc
Q 008708 401 KMRVNGIKP 409 (557)
Q Consensus 401 ~m~~~~~~p 409 (557)
++...++.|
T Consensus 1659 Rvi~l~l~~ 1667 (1710)
T KOG1070|consen 1659 RVIELKLSI 1667 (1710)
T ss_pred HHHhcCCCh
Confidence 444444333
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.8e-06 Score=74.29 Aligned_cols=186 Identities=13% Similarity=-0.021 Sum_probs=117.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HH
Q 008708 269 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH---KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDI--CS 343 (557)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 343 (557)
.....+..++..+...|++++|...|+++.... +.+. .++..+..++...|++++|...++++.+....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345667777888888888888888888887653 2222 35677778888888888888888888765321111 24
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 008708 344 YTTMLSAYVNA--------SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFT 415 (557)
Q Consensus 344 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 415 (557)
+..+..++... |++++|.+.++.+.... +-+...+..+..... ... .. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 55555556554 67778888888877653 222222222211100 000 00 00112
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCC
Q 008708 416 TIMDAYGKNKDFDSAVVWYKEMESCG--FPPDQKAKNILLSLAKTADERNEANELLGNFNH 474 (557)
Q Consensus 416 ~l~~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 474 (557)
.+...+.+.|++++|...++.+.+.. -+.....+..+..++...|++++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566788888888888888887631 112346777888888888998888888877653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.2e-05 Score=79.63 Aligned_cols=234 Identities=12% Similarity=0.094 Sum_probs=181.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008708 201 KPDQKMFHMMIYMYKKAGGYEKARKLFALMAER-GVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLIN 279 (557)
Q Consensus 201 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 279 (557)
|-+...|-..+......++.++|.++.++++.. +++-.. --...|.++++
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee-----------------------------EKLNiWiA~lN 1505 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE-----------------------------EKLNIWIAYLN 1505 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH-----------------------------HHHHHHHHHHh
Confidence 344567888899999999999999999999875 111000 01234666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008708 280 AYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEG 359 (557)
Q Consensus 280 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 359 (557)
.-...|.-+...++|+++.+. -.....|..|...|.+.+.+++|.++++.|.+.-- -....|...+..+.++.+-+.
T Consensus 1506 lEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~a 1582 (1710)
T KOG1070|consen 1506 LENAYGTEESLKKVFERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEA 1582 (1710)
T ss_pred HHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHH
Confidence 666667888889999998874 22345788999999999999999999999987632 467789999999999999999
Q ss_pred HHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008708 360 AEKFFRRLKQDGFVP--NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEM 437 (557)
Q Consensus 360 A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 437 (557)
|..++.++++.- |- ......-.+..-.+.|+.+++..+|+...... +-....|+.+++.-.++|+.+.+..+|++.
T Consensus 1583 a~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1583 ARELLKRALKSL-PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred HHHHHHHHHhhc-chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999988762 22 34455666677778999999999999988652 445788999999999999999999999999
Q ss_pred HhCCCCCCH--HHHHHHHHHHhhcCCHHHHHHH
Q 008708 438 ESCGFPPDQ--KAKNILLSLAKTADERNEANEL 468 (557)
Q Consensus 438 ~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~ 468 (557)
...++.|-. ..|...+..=...|+-+.++.+
T Consensus 1661 i~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1661 IELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 998888755 4677777776777776555443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00015 Score=74.41 Aligned_cols=227 Identities=13% Similarity=0.129 Sum_probs=148.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 008708 212 YMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEAL 291 (557)
Q Consensus 212 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 291 (557)
..+...+-+++|..+|++.. .+....+.++..-++.++|.+.-+... .+..|+.+..+-.+.|...+|+
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIENIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHHhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHH
Confidence 34455666777777776643 245556666666677777766655542 4567888999988999998888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008708 292 AVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG 371 (557)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 371 (557)
+-|-+. .|+..|..+++...+.|.+++-.+.+.-.++....|... +.|+-+|++.++..+.++++.
T Consensus 1125 eSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~------ 1190 (1666)
T KOG0985|consen 1125 ESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA------ 1190 (1666)
T ss_pred HHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc------
Confidence 777543 467788899999999999999988887777665555543 567888888888877666553
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH---------------
Q 008708 372 FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKE--------------- 436 (557)
Q Consensus 372 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--------------- 436 (557)
-||......+++-|...|.++.|.-+|.... -|..+...+...|+++.|...-++
T Consensus 1191 -gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1191 -GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACV 1260 (1666)
T ss_pred -CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh
Confidence 4666666666777777777766665554432 233333334444444443332222
Q ss_pred ---------HHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 437 ---------MESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 437 ---------m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
|-..++.....-+.-++..|...|-+++...+++...
T Consensus 1261 d~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1261 DKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred chhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 2112233344556677778888888888888887643
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.9e-06 Score=67.66 Aligned_cols=94 Identities=9% Similarity=-0.107 Sum_probs=67.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK 423 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 423 (557)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|++..+.. +.+...+..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4455666677777777777777777664 5566777777777777777777777777777653 4456777777777777
Q ss_pred cCChhHHHHHHHHHHh
Q 008708 424 NKDFDSAVVWYKEMES 439 (557)
Q Consensus 424 ~g~~~~A~~~~~~m~~ 439 (557)
.|++++|+..|+..++
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777776
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.9e-05 Score=71.74 Aligned_cols=172 Identities=15% Similarity=0.048 Sum_probs=119.0
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHc-----
Q 008708 249 ETNYKEVSKIYDQMQRAGLQ-PD-VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH--KAYNILLDAFAIS----- 319 (557)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~----- 319 (557)
.+++++|...|+.+....+. |. ..++..+..++...|++++|+..++++.+....... .++..+..++...
T Consensus 46 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~ 125 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVD 125 (235)
T ss_pred cCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccccc
Confidence 68999999999999886432 11 246778889999999999999999999875321111 2455566666654
Q ss_pred ---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 320 ---GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMM 396 (557)
Q Consensus 320 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 396 (557)
|++++|.+.|+.+.... +.+...+..+..... ... . . ......+...+.+.|++++|.
T Consensus 126 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~-~-------~~~~~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 126 RDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------R-L-------AGKELYVARFYLKRGAYVAAI 186 (235)
T ss_pred CCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------H-H-------HHHHHHHHHHHHHcCChHHHH
Confidence 78899999999998763 212223222211110 000 0 0 011225667788999999999
Q ss_pred HHHHHHHHCC--CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 397 EIYDKMRVNG--IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 397 ~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
..+++..+.. -+.....+..++.++...|++++|..+++.+..
T Consensus 187 ~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 187 NRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999988652 122357888999999999999999999888875
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-05 Score=69.98 Aligned_cols=151 Identities=11% Similarity=0.075 Sum_probs=119.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 313 LDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNL 392 (557)
Q Consensus 313 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 392 (557)
+..|...|+++......+.+... . ..+...++.+++...++...+.. +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 44688899988875554333211 1 01223667788888888888876 78999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHH-HhcCC--hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 008708 393 EKMMEIYDKMRVNGIKPNQTIFTTIMDAY-GKNKD--FDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELL 469 (557)
Q Consensus 393 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 469 (557)
++|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++.++.+ +-+...+..+...+.+.|++++|...+
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999864 44688888888864 67787 599999999999853 446678889999999999999999999
Q ss_pred HhcCCCCCC
Q 008708 470 GNFNHPNNE 478 (557)
Q Consensus 470 ~~~~~~~~~ 478 (557)
+++.+..+.
T Consensus 168 ~~aL~l~~~ 176 (198)
T PRK10370 168 QKVLDLNSP 176 (198)
T ss_pred HHHHhhCCC
Confidence 998866553
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.5e-08 Score=55.95 Aligned_cols=32 Identities=34% Similarity=0.671 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008708 126 GYAPSVVSHTALMEAYGRGGRYKNAEAIFRRM 157 (557)
Q Consensus 126 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 157 (557)
|++||..+||.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56667777777777777777777777776665
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-07 Score=55.39 Aligned_cols=31 Identities=42% Similarity=0.887 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 372 FVPNVITYGTLIKGYAKVNNLEKMMEIYDKM 402 (557)
Q Consensus 372 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (557)
+.||..||+.||++|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.1e-05 Score=67.36 Aligned_cols=152 Identities=13% Similarity=0.107 Sum_probs=91.2
Q ss_pred hhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 008708 71 KQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNA 150 (557)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 150 (557)
...|+.+....+...+.... +.+......++....+.|++..|...|.+..... ++|..+|+.+.-+|.+.|+++.|
T Consensus 77 ~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~A 153 (257)
T COG5010 77 YLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEA 153 (257)
T ss_pred HhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHH
Confidence 33344444444443332221 2334444456666677777777777777766553 55667777777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 151 EAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALM 230 (557)
Q Consensus 151 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 230 (557)
..-|.+..+..+. ++..++.+.-.+.-.|+.+.|..++..... ....|..+-..|.......|++++|..+...-
T Consensus 154 r~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l----~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 154 RRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYL----SPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHh----CCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 7777776665332 455566666666667777777777766642 22335566666666677777777776665443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.5e-05 Score=65.81 Aligned_cols=171 Identities=11% Similarity=0.086 Sum_probs=83.6
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008708 258 IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC 337 (557)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 337 (557)
+.+.+.......+......-...|+..|++++|++...... +......=...+.+..+++-|.+.+++|.+-
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 33444333333333333333445566666666666555411 1122222233344555566666666666543
Q ss_pred CCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHH
Q 008708 338 SPDICSYTTMLSAYVNA----SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTI 413 (557)
Q Consensus 338 ~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 413 (557)
.+..|.+.|..++.+. +.+..|.-+|++|.+. .+|+..+.+....++...|++++|..+++..+... ..++.+
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpet 243 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPET 243 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHH
Confidence 2445555555555432 3455566666665543 35566666666666666666666666666665543 234555
Q ss_pred HHHHHHHHHhcCChhHH-HHHHHHHHh
Q 008708 414 FTTIMDAYGKNKDFDSA-VVWYKEMES 439 (557)
Q Consensus 414 ~~~l~~~~~~~g~~~~A-~~~~~~m~~ 439 (557)
...++.+-...|...++ .+.+.++..
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 55554444444444332 334444443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00012 Score=76.77 Aligned_cols=236 Identities=12% Similarity=0.143 Sum_probs=126.1
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 174 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 174 (557)
...+..|+..|...+++++|.++.+...+. .|+ ...|-.+...+.+.++..++..+ . ++.
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~ 91 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LID 91 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hhh
Confidence 445556666666666666666666655544 233 33333333455555554443333 1 222
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHH
Q 008708 175 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKE 254 (557)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 254 (557)
......++.-...++..+.+ ...+..++..++.+|-+.|+.++|..+++++.+..
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~-----~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-------------------- 146 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILL-----YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-------------------- 146 (906)
T ss_pred hcccccchhHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------------------
Confidence 22222233222223333321 12333456666666777777777776666666542
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 255 VSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRR 334 (557)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 334 (557)
+-|..+.|.+...|... ++++|.+++.+.... +...+++..+..+|.++..
T Consensus 147 -------------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 147 -------------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred -------------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh
Confidence 22566667777777766 777777777766543 5555666777777777765
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHH
Q 008708 335 DRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD-GFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTI 413 (557)
Q Consensus 335 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 413 (557)
.. |+ +.+.-..+.+.+... +..--..++-.+-..|....+++++..+++.+++.. +-|...
T Consensus 198 ~~--~~---------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a 259 (906)
T PRK14720 198 YN--SD---------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKA 259 (906)
T ss_pred cC--cc---------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-Ccchhh
Confidence 42 11 122222233333322 222233455556666777777888888888877753 334555
Q ss_pred HHHHHHHHH
Q 008708 414 FTTIMDAYG 422 (557)
Q Consensus 414 ~~~l~~~~~ 422 (557)
..-++.+|.
T Consensus 260 ~~~l~~~y~ 268 (906)
T PRK14720 260 REELIRFYK 268 (906)
T ss_pred HHHHHHHHH
Confidence 555665554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-05 Score=65.63 Aligned_cols=95 Identities=7% Similarity=-0.107 Sum_probs=65.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 309 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 388 (557)
Q Consensus 309 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 388 (557)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|++..... +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4445566667777777777777766553 3466667777777777777777777777777654 5566777777777777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 008708 389 VNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 389 ~g~~~~a~~~~~~m~~~ 405 (557)
.|++++|...|+..++.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777664
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00037 Score=60.84 Aligned_cols=144 Identities=13% Similarity=0.119 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 008708 250 TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI----SGMVDQA 325 (557)
Q Consensus 250 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 325 (557)
+++++|.+...... +......=+..+.+..+++-|.+.+++|.+- .+..|.+.|..++.+ .+.+..|
T Consensus 122 ~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 122 GDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred CChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhH
Confidence 44555555444411 3333333445556667777777777777652 345566666666543 2456777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q 008708 326 RTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEK-MMEIYDKMRV 404 (557)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 404 (557)
.-+|++|.++ .+|++.+.+....++...|++++|..+++...... ..++.+...++.+-...|...+ ..+.+.++..
T Consensus 193 fyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 193 FYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 7777777642 36677777777777777777777777777777654 4456666666666556665433 3344445443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.6e-05 Score=65.13 Aligned_cols=105 Identities=10% Similarity=0.009 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 420 (557)
......+...+...|++++|...++.+...+ +.+...+..+..++...|++++|..++++..+.+ +.+...+..+..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3445555666667777777777777766654 4466667777777777777777777777766653 4455666666677
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 008708 421 YGKNKDFDSAVVWYKEMESCGFPPDQKAK 449 (557)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 449 (557)
+...|++++|...++...+ +.|+...+
T Consensus 95 ~~~~g~~~~A~~~~~~al~--~~p~~~~~ 121 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE--ICGENPEY 121 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH--hccccchH
Confidence 7777777777777777766 34544443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00015 Score=68.84 Aligned_cols=144 Identities=13% Similarity=0.041 Sum_probs=87.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 180 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 180 (557)
-..-.+...|++++|+..++.+... .|.|+..+......+...++.++|.+.++++....+. .......+..++.+.|
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g 388 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcC
Confidence 3344445566777777777776654 2334555555666677777777777777777664322 2455556666777777
Q ss_pred CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHH
Q 008708 181 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYD 260 (557)
Q Consensus 181 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~ 260 (557)
++.+|+.+++.... ..+.|+..|..|..+|...|+..++..-..+.... .|++++|...+.
T Consensus 389 ~~~eai~~L~~~~~----~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~---------------~G~~~~A~~~l~ 449 (484)
T COG4783 389 KPQEAIRILNRYLF----NDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL---------------AGRLEQAIIFLM 449 (484)
T ss_pred ChHHHHHHHHHHhh----cCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh---------------CCCHHHHHHHHH
Confidence 77777777766653 33556666777777777777777666655554432 355666666665
Q ss_pred HHHHC
Q 008708 261 QMQRA 265 (557)
Q Consensus 261 ~~~~~ 265 (557)
...+.
T Consensus 450 ~A~~~ 454 (484)
T COG4783 450 RASQQ 454 (484)
T ss_pred HHHHh
Confidence 55543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00015 Score=75.28 Aligned_cols=143 Identities=15% Similarity=0.131 Sum_probs=100.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 269 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT-HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 347 (557)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 347 (557)
.+...+..|.....+.|.+++|..+++...+. .|+ ......++..+.+.+++++|...+++..... +.+....+.+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 35667777777777888888888888877764 344 4456667777777888888888887777653 3355666777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTT 416 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 416 (557)
..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.- .|....|+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR 227 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence 777777888888888888877643 4456777777777888888888888888777642 333444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0002 Score=61.97 Aligned_cols=186 Identities=14% Similarity=0.156 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 008708 250 TNYKEVSKIYDQMQR---AG-LQPDVV-SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQ 324 (557)
Q Consensus 250 ~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 324 (557)
.+.+++.+++..+.. .| ..++.. .|..++-+....|+.+.|...++.+...- +.+..+-..-.-.+-..|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 345566666555543 22 333332 23344445555666666666666655442 2222222111222344566666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 325 ARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 404 (557)
Q Consensus 325 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (557)
|+++++.+.+.. +.|.+++--=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 666666666554 334455554444445555555666555555543 355666666666666666666666666666654
Q ss_pred CCCCcCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHh
Q 008708 405 NGIKPNQTIFTTIMDAYGKNK---DFDSAVVWYKEMES 439 (557)
Q Consensus 405 ~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~ 439 (557)
.. |.++..+..+.+.+.-.| +...|.++|.+.++
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 31 223444444444433222 34455555655554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0041 Score=62.95 Aligned_cols=163 Identities=13% Similarity=0.114 Sum_probs=88.4
Q ss_pred HHHHHHhhChHHHHHHHhhhcCCCCChHHHHHHHHH-hhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCh
Q 008708 34 LMNQIEEVGSAVAVLRSERTRGQPLPKDLVLGTLVR-LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDF 112 (557)
Q Consensus 34 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 112 (557)
+...+++.++|..+++. .. -+..+.+ +...|.|++|+++-+.--+-. -..+|..-...+-..++.
T Consensus 809 LAieLgMlEeA~~lYr~-ck---------R~DLlNKlyQs~g~w~eA~eiAE~~DRiH----Lr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQ-CK---------RYDLLNKLYQSQGMWSEAFEIAETKDRIH----LRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred HHHHHhhHHHHHHHHHH-HH---------HHHHHHHHHHhcccHHHHHHHHhhcccee----hhhhHHHHHHHHHhhccH
Confidence 34456677788777763 11 1223333 245567777776654322221 134555555555566666
Q ss_pred hHHHHHHHHH---------------------HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 113 NKAEKVLSFM---------------------NKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQI 171 (557)
Q Consensus 113 ~~A~~~~~~~---------------------~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 171 (557)
+.|++.|++. .++ ..+...|.--...+-..|..+.|+.+|...+. |-+
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~--~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR--KRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh--ccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 6666655421 111 23555555555556666777777777765432 344
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 172 ILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALM 230 (557)
Q Consensus 172 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 230 (557)
+++..|-.|+.++|-++-++- -|......|.+.|-..|++.+|..+|.+.
T Consensus 944 ~VrI~C~qGk~~kAa~iA~es---------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEES---------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred heeeEeeccCchHHHHHHHhc---------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 555555566666666655443 23444555666666666666666666544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00054 Score=59.40 Aligned_cols=187 Identities=16% Similarity=0.185 Sum_probs=109.8
Q ss_pred CHHHHHHHHHHhHhccCCC-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CH-HHHHHHhcccCCHHHHH
Q 008708 181 KFKEAEEVFMTLLDEEKSP-LKPDQK-MFHMMIYMYKKAGGYEKARKLFALMAERGVQQ-ST-VTYNSLMSFETNYKEVS 256 (557)
Q Consensus 181 ~~~~A~~~~~~~~~~~~~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~-~~~~~ll~~~~~~~~a~ 256 (557)
+.++..+++..++...+.+ ..++.. .|..+.-+....|+.+.|..+++.+..+-+.. -+ .....++.+.+++++|.
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 3444445554444333333 344443 23344455556677777777776665542111 11 12333444566667777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008708 257 KIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR 336 (557)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 336 (557)
++|+.+...+ +.|..++---+.+.-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-..
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 7776666654 335666666666666677777777777777665 45677788888888888888888888887776442
Q ss_pred CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhC
Q 008708 337 CSPDICSYTTMLSAYVNAS---DMEGAEKFFRRLKQD 370 (557)
Q Consensus 337 ~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 370 (557)
|.++..+..+...+...| +.+-+.++|.+.++.
T Consensus 185 -P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 185 -PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred -CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 334555555555544443 455566777766654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00014 Score=75.48 Aligned_cols=148 Identities=8% Similarity=0.023 Sum_probs=125.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 302 VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGT 381 (557)
Q Consensus 302 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 381 (557)
.+.+...+..|.......|.+++|..+++...+.. +-+......++.++.+.+++++|+..+++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 45568899999999999999999999999998763 3356678889999999999999999999999875 667788899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 382 LIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILL 453 (557)
Q Consensus 382 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 453 (557)
+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+.- .|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 9999999999999999999999843 4458899999999999999999999999998742 34444444333
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00029 Score=73.99 Aligned_cols=228 Identities=11% Similarity=0.124 Sum_probs=137.5
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 63 VLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYG 142 (557)
Q Consensus 63 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 142 (557)
....+..+...++++.|.++.+...+..+ -....|..+...+.+.++.++|..+ .+.. ...
T Consensus 34 ~~~Li~~~~~~~~~deai~i~~~~l~~~P--~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~---------------~~~ 94 (906)
T PRK14720 34 LDDLIDAYKSENLTDEAKDICEEHLKEHK--KSISALYISGILSLSRRPLNDSNLL--NLID---------------SFS 94 (906)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCC--cceehHHHHHHHHHhhcchhhhhhh--hhhh---------------hcc
Confidence 34444455588999999999997776653 2344555566688888887777666 3332 222
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008708 143 RGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEK 222 (557)
Q Consensus 143 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 222 (557)
...++.....+...|... .-+..++..+..+|-+.|+.++|..+++++++.+ +.|+.+.|.+...|+.. ++++
T Consensus 95 ~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D----~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 95 QNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD----RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred cccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHh-hHHH
Confidence 333332233333333332 2234456666666777777777777777776432 45566667777777666 7777
Q ss_pred HHHHHHHHHHcCC-----CCCHHHHHHHhcc-cCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008708 223 ARKLFALMAERGV-----QQSTVTYNSLMSF-ETNYKEVSKIYDQMQRA-GLQPDVVSYALLINAYGKARREEEALAVFE 295 (557)
Q Consensus 223 A~~~~~~~~~~~~-----~~~~~~~~~ll~~-~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 295 (557)
|+.++.+...+-+ ..-...|..++.. ..+.+.-..+.+.+... +...-+.++-.+-..|...+++++++.+++
T Consensus 168 A~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 168 AITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 7777666654311 0111122223222 23445555555555554 334445667777788889999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHH
Q 008708 296 EMLDAGVRPTHKAYNILLDAFA 317 (557)
Q Consensus 296 ~~~~~~~~~~~~~~~~li~~~~ 317 (557)
.+++.. +.|.....-++.+|.
T Consensus 248 ~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcC-CcchhhHHHHHHHHH
Confidence 999874 346667777777775
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0014 Score=62.38 Aligned_cols=135 Identities=17% Similarity=0.163 Sum_probs=71.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 008708 249 ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT-HKAYNILLDAFAISGMVDQART 327 (557)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~ 327 (557)
.+.+++|+..++.+.+..+ -|...+......+.+.|+.++|.+.++++... .|+ ......+..+|.+.|++.+|+.
T Consensus 319 ~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 319 AGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred hcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHH
Confidence 3555556666655555421 23344444455556666666666666666553 233 3444455556666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 328 VFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
+++...... +.|+..|..|..+|...|+..++.....+ .|...|+++.|...+....+.
T Consensus 396 ~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 396 ILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 665555432 34555666666666666655554443332 234445566666555555543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.7e-05 Score=60.68 Aligned_cols=96 Identities=10% Similarity=0.005 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 387 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 387 (557)
....+...+...|++++|...|+.+...+ +.+...+..+...+...|++++|...++.....+ +.+...+..+..+|.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 34445555556666666666666655433 3355555566666666666666666666655543 445555666666666
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 008708 388 KVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~ 405 (557)
..|++++|...|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.15 E-value=9.1e-05 Score=70.93 Aligned_cols=126 Identities=12% Similarity=0.148 Sum_probs=105.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 177 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 177 (557)
....|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++.+.+...+ .+...+..-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34467888888999999999999999874 55 445588888889999999999999987644 36777777788899
Q ss_pred HcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 178 EANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
+.++.+.|+++.+++++. .|.+..+|..|..+|.+.|+++.|+..+..+.-
T Consensus 246 ~k~~~~lAL~iAk~av~l----sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL----SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHh----CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999999999853 245567999999999999999999999987763
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00027 Score=58.42 Aligned_cols=126 Identities=19% Similarity=0.281 Sum_probs=84.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS---VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS--ALTYQII 172 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~l 172 (557)
.|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|++.......|+ ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 444555555 3777788888888887763 223 23334455777788888888888888887653332 2234456
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 173 LKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALM 230 (557)
Q Consensus 173 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 230 (557)
...+...|++++|+..++... +.......+....+.|.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~-----~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIP-----DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhcc-----CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677888888888888886642 12234456667788888888888888888653
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0004 Score=57.41 Aligned_cols=53 Identities=13% Similarity=0.173 Sum_probs=22.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008708 382 LIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKE 436 (557)
Q Consensus 382 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 436 (557)
|...+...|++++|+..++..... ......+....++|.+.|++++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 344444444444444444332211 12233334444444444555554444443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00028 Score=67.60 Aligned_cols=117 Identities=12% Similarity=0.134 Sum_probs=54.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChh
Q 008708 349 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFD 428 (557)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 428 (557)
..+...++++.|.++++++.+.. |+. ...++..+...++-.+|.+++++.++.. +-+...+..-...|.+.++++
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 33334444555555555544432 322 2224444444444455555555544321 223444444444455555555
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 429 SAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 429 ~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
.|+.+.+++.+ ..|+. .+|..|..+|...|++++|...++.+
T Consensus 252 lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 252 LALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555555554 23332 35555555555555555555555443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.03 Score=57.68 Aligned_cols=221 Identities=19% Similarity=0.222 Sum_probs=134.6
Q ss_pred hhChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 008708 40 EVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVL 119 (557)
Q Consensus 40 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 119 (557)
++..|++.......+....+..-++..+. +.++|+.++|..+++.....++ .+..+...+-.+|.+.|+.++|..+|
T Consensus 24 qfkkal~~~~kllkk~Pn~~~a~vLkaLs-l~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNALYAKVLKALS-LFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHH-HHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34466666664333332233333444443 3457788888888888776653 36778888999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHH---------HHHHHH
Q 008708 120 SFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN-KFK---------EAEEVF 189 (557)
Q Consensus 120 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~---------~A~~~~ 189 (557)
++.... -|+......+..+|++.+.+.+-.+.--++-+. .+-+++.+=++++.....- ..+ -|.+.+
T Consensus 101 e~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~ 177 (932)
T KOG2053|consen 101 ERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV 177 (932)
T ss_pred HHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence 998876 467888888888888888776655554444443 3335555555665554432 222 255566
Q ss_pred HHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCCCCHHHHH---HHhcccCCHHHHHHHHHHHHHC
Q 008708 190 MTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFAL-MAERGVQQSTVTYN---SLMSFETNYKEVSKIYDQMQRA 265 (557)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~---~ll~~~~~~~~a~~~~~~~~~~ 265 (557)
+.+++.+ |.-.+..-...-...+...|++++|..++.. ..+.-..-+...-+ .++..++++.+..++-.++...
T Consensus 178 ~~~l~~~--gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 178 QKLLEKK--GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHhccC--CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 6666532 2112222222334455667889999888843 33332222222222 2334478888888888888877
Q ss_pred CCC
Q 008708 266 GLQ 268 (557)
Q Consensus 266 ~~~ 268 (557)
+..
T Consensus 256 ~~D 258 (932)
T KOG2053|consen 256 GND 258 (932)
T ss_pred CCc
Confidence 643
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00012 Score=67.65 Aligned_cols=131 Identities=12% Similarity=0.055 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH----hCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CC-CCCCHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMR----RDRC-SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ----DG-FVPNVI 377 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~-~~p~~~ 377 (557)
.|..|.+.|.-.|+++.|+...+.-+ +.|- ......+..+..++.-.|+++.|.+.|+.... .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34455555555566666665544321 1111 11224455666666666677766666665332 11 122334
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008708 378 TYGTLIKGYAKVNNLEKMMEIYDKMRVN-----GIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
+..+|.+.|.-..++++|+.++.+-+.. +..-....+..+..+|...|..+.|+.+.+..+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4555666666666667776666553320 111234556666667766777666666655443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.035 Score=57.18 Aligned_cols=386 Identities=14% Similarity=0.153 Sum_probs=214.6
Q ss_pred HHHhhChHHHHHHHhhhcCCCCChHHHHHHHH-HhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHH
Q 008708 37 QIEEVGSAVAVLRSERTRGQPLPKDLVLGTLV-RLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKA 115 (557)
Q Consensus 37 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 115 (557)
.+++..+|..+++. ...-..+++.++.++. .+..++..++|..+++++.... |+......+..+|.+.+.+.+-
T Consensus 55 r~gk~~ea~~~Le~--~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~---P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 55 RLGKGDEALKLLEA--LYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY---PSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HhcCchhHHHHHhh--hccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHHHH
Confidence 34466688877762 3333444666777775 4678899999999999998876 4567777888889998888775
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CC---------hHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHH
Q 008708 116 EKVLSFMNKKGYAPSVVSHTALMEAYGRG-GR---------YKNAEAIFRRMQSSG-PRPSALTYQIILKLFVEANKFKE 184 (557)
Q Consensus 116 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~---------~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~ 184 (557)
.++=-++-+. ++.+...+=++++.+... .. ..-|.++++.+.+.+ .--+..-...-...+...|.+++
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 5544444432 223344333444444332 11 234566677776654 33334444555567788999999
Q ss_pred HHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-----HHHHHhcc--------c--
Q 008708 185 AEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTV-----TYNSLMSF--------E-- 249 (557)
Q Consensus 185 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~ll~~--------~-- 249 (557)
|..++..-.. ..-...+...-+.-+..+...+++.+..++-.++...|... -. .+..+-.. .
T Consensus 209 al~~l~~~la--~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd-y~~~~~sv~klLe~~~~~~a~~~~s~ 285 (932)
T KOG2053|consen 209 ALEFLAITLA--EKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD-YKIYTDSVFKLLELLNKEPAEAAHSL 285 (932)
T ss_pred HHHHHHHHHH--HhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc-hHHHHHHHHHHHHhcccccchhhhhh
Confidence 9999844432 12223344555667888999999999999999998876432 11 11222111 0
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCC----CHHHH---------HHH
Q 008708 250 -TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYG---KARREEEALAVFEEMLDAGVRP----THKAY---------NIL 312 (557)
Q Consensus 250 -~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~~----~~~~~---------~~l 312 (557)
+..+...+..+...... ....|-+-+.++. .-|+.+++...|-+- -|..| |...| ..+
T Consensus 286 ~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kpcc~~Dl~~yl~~l~~~q~~~l 360 (932)
T KOG2053|consen 286 SKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKPCCAIDLNHYLGHLNIDQLKSL 360 (932)
T ss_pred hhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCcHhHhhHHHhhccCCHHHHHHH
Confidence 11222222222222221 1122333333333 457777766554432 23333 22222 223
Q ss_pred HHHHHHc------------------------C-----CHHHHHHHHHHHH---hCC------CCCCH---------HHHH
Q 008708 313 LDAFAIS------------------------G-----MVDQARTVFKCMR---RDR------CSPDI---------CSYT 345 (557)
Q Consensus 313 i~~~~~~------------------------g-----~~~~A~~~~~~~~---~~~------~~~~~---------~~~~ 345 (557)
+..+... | .-+.-..++.+.. +.| .-|+. -+-+
T Consensus 361 ~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~ 440 (932)
T KOG2053|consen 361 MSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVN 440 (932)
T ss_pred HHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHH
Confidence 3332211 1 1122222222221 111 22222 2346
Q ss_pred HHHHHHHHcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008708 346 TMLSAYVNASDME---GAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 422 (557)
Q Consensus 346 ~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 422 (557)
.|+..|.+.++.. +|+-+++...... +.|..+--.+|..|+-.|-+..|.++|..+--..+.-|..-|-. ...+.
T Consensus 441 ~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~ 518 (932)
T KOG2053|consen 441 HLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAE 518 (932)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHH
Confidence 6777888887765 4555565555543 55666777889999999999999999998865545444333221 22334
Q ss_pred hcCChhHHHHHHHHHH
Q 008708 423 KNKDFDSAVVWYKEME 438 (557)
Q Consensus 423 ~~g~~~~A~~~~~~m~ 438 (557)
..|++..+...+....
T Consensus 519 t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 519 TSGRSSFASNTFNEHL 534 (932)
T ss_pred hcccchhHHHHHHHHH
Confidence 4556666655555544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.024 Score=55.01 Aligned_cols=421 Identities=11% Similarity=0.135 Sum_probs=237.0
Q ss_pred hchhcchhHHHHHHHHHhh--ChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHH
Q 008708 23 ADEAGKKNWRRLMNQIEEV--GSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFL 100 (557)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (557)
..+.|+.+|+.++..+... +++....+. ...--|..+..+...+.+....++++.+..+|....... ++...|.
T Consensus 15 ~nP~di~sw~~lire~qt~~~~~~R~~YEq-~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv---LnlDLW~ 90 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQPIDKVRETYEQ-LVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV---LNLDLWK 90 (656)
T ss_pred cCCccHHHHHHHHHHHccCCHHHHHHHHHH-HhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---hhHhHHH
Confidence 3688999999999988643 344555553 233344445556666666666788888889998876554 4556666
Q ss_pred HHHHHHHh-cCChhH----HHHHHHHHH-hCCCCC-CHHHHHHHHHHH---------HhcCChHHHHHHHHHHHhCCCCC
Q 008708 101 MLITAYGK-QGDFNK----AEKVLSFMN-KKGYAP-SVVSHTALMEAY---------GRGGRYKNAEAIFRRMQSSGPRP 164 (557)
Q Consensus 101 ~l~~~~~~-~g~~~~----A~~~~~~~~-~~g~~~-~~~~~~~li~~~---------~~~g~~~~A~~~~~~m~~~~~~~ 164 (557)
.-+.--.+ .|+... ..+.|+-.. +.|+.+ +-..|+..+..+ ..+.+.+...++|++++..-..
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~- 169 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH- 169 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc-
Confidence 55544333 344433 334444433 334333 344577766543 3344566677778777653111
Q ss_pred CH-HHHHHHHHHHHHcCC--------------HHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc-------CCHHH
Q 008708 165 SA-LTYQIILKLFVEANK--------------FKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA-------GGYEK 222 (557)
Q Consensus 165 ~~-~~~~~ll~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------g~~~~ 222 (557)
+. ..|+-.. .+-..=+ +-.|.++++++ ..+.+++.+. |-.++
T Consensus 170 nlEkLW~DY~-~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel---------------~~lt~GL~r~~~~vp~~~T~~e 233 (656)
T KOG1914|consen 170 NLEKLWKDYE-AFEQEINIITARKFIGERSPEYMNARRVYQEL---------------QNLTRGLNRNAPAVPPKGTKDE 233 (656)
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH---------------HHHHhhhcccCCCCCCCCChHH
Confidence 21 1222111 1111111 12222222222 2223333222 11122
Q ss_pred H--HHHHHHHH----HcC-------------------------CCCCHHHH-HHHhcc-------cCC-------HHHHH
Q 008708 223 A--RKLFALMA----ERG-------------------------VQQSTVTY-NSLMSF-------ETN-------YKEVS 256 (557)
Q Consensus 223 A--~~~~~~~~----~~~-------------------------~~~~~~~~-~~ll~~-------~~~-------~~~a~ 256 (557)
. .+++.... +.+ ..|+.... ...+.. .|+ .+++.
T Consensus 234 ~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~ 313 (656)
T KOG1914|consen 234 IQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAA 313 (656)
T ss_pred HHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHH
Confidence 1 11121111 111 11211110 001110 111 34555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 257 KIYDQMQRAGLQPDVVSYALLINAYG---KARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 333 (557)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 333 (557)
.+++.....-...+...|..+...-- +.++.+.....++++...-...-..+|...++...+..-+..|..+|.+..
T Consensus 314 ~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR 393 (656)
T KOG1914|consen 314 SIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAR 393 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 55555544322223333333332211 112355666667766554322333467778888888888999999999999
Q ss_pred hCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC--
Q 008708 334 RDRCSP-DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-- 410 (557)
Q Consensus 334 ~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-- 410 (557)
+.+..+ ++...++++..|+ .++..-|.++|+--++. ...++.-....++.+...++-..+..+|++....++.|+
T Consensus 394 ~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks 471 (656)
T KOG1914|consen 394 EDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKS 471 (656)
T ss_pred hccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhh
Confidence 887666 6777788887665 57889999999976554 234445556778888899999999999999998877766
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhhcCCHHHHH
Q 008708 411 QTIFTTIMDAYGKNKDFDSAVVWYKEMESC---GFPPDQKAKNILLSLAKTADERNEAN 466 (557)
Q Consensus 411 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~ 466 (557)
..+|..++.-=..-|++..+.++-+++... ...+....-..+++-|.-.+....-.
T Consensus 472 ~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 472 KEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccH
Confidence 578999999889999999999998887652 01222234445556565555544433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00042 Score=66.75 Aligned_cols=121 Identities=12% Similarity=0.095 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 269 PDVVSYALLINAYGKARREEEALAVFEEMLDA--GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTT 346 (557)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 346 (557)
.+......+++.+....+.+.+..++.+.... ....-..|..+++..|.+.|..+.++.+++.=...|+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34445555555555555555566655555443 1111223344566666666666666666665555666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 347 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 389 (557)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 389 (557)
||..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666666655554444545544444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00017 Score=64.22 Aligned_cols=97 Identities=14% Similarity=0.184 Sum_probs=55.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHH
Q 008708 351 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSA 430 (557)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 430 (557)
+.+.+++.+|+..|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+..+..+ +-...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 345556666666666666553 4455556666666666666666666666655432 11245566666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHH
Q 008708 431 VVWYKEMESCGFPPDQKAKNI 451 (557)
Q Consensus 431 ~~~~~~m~~~~~~p~~~~~~~ 451 (557)
++.|++.++ +.|+..+|..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHH
Confidence 666666665 4555554443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.2e-05 Score=46.57 Aligned_cols=32 Identities=38% Similarity=0.774 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC
Q 008708 379 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN 410 (557)
Q Consensus 379 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 410 (557)
|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.2e-05 Score=46.63 Aligned_cols=33 Identities=24% Similarity=0.519 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 008708 133 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS 165 (557)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 165 (557)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666666554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00028 Score=53.10 Aligned_cols=90 Identities=20% Similarity=0.261 Sum_probs=42.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 008708 347 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD 426 (557)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 426 (557)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...... +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3444444555555555555544432 2233444444555555555555555555544432 2223344444445555555
Q ss_pred hhHHHHHHHHHH
Q 008708 427 FDSAVVWYKEME 438 (557)
Q Consensus 427 ~~~A~~~~~~m~ 438 (557)
++.|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555554444
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00027 Score=68.09 Aligned_cols=125 Identities=10% Similarity=0.123 Sum_probs=104.2
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008708 300 AGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD--RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVI 377 (557)
Q Consensus 300 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 377 (557)
.+.+.+......+++.+....+++.+..++.+.... ....-..|..++++.|...|..+.++.+++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344567778888888888888899999999888765 222334566799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 008708 378 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN 424 (557)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 424 (557)
+++.|++.+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998777677777777666666555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00047 Score=66.33 Aligned_cols=96 Identities=13% Similarity=0.074 Sum_probs=59.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChh
Q 008708 349 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFD 428 (557)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 428 (557)
..+...|++++|+..|+++++.. +.+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34455666666666666666654 4455666666666666667777766666666542 234556666666666667777
Q ss_pred HHHHHHHHHHhCCCCCCHHH
Q 008708 429 SAVVWYKEMESCGFPPDQKA 448 (557)
Q Consensus 429 ~A~~~~~~m~~~~~~p~~~~ 448 (557)
+|+..|+++++ +.|+...
T Consensus 88 eA~~~~~~al~--l~P~~~~ 105 (356)
T PLN03088 88 TAKAALEKGAS--LAPGDSR 105 (356)
T ss_pred HHHHHHHHHHH--hCCCCHH
Confidence 77777666665 3444433
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.6e-05 Score=45.92 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 008708 133 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP 164 (557)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 164 (557)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555554443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.5e-05 Score=45.37 Aligned_cols=28 Identities=25% Similarity=0.674 Sum_probs=10.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 008708 379 YGTLIKGYAKVNNLEKMMEIYDKMRVNG 406 (557)
Q Consensus 379 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (557)
|+.++.+|++.|+++.|.++|+.|.+.|
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333333333333333333333333333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00083 Score=53.32 Aligned_cols=98 Identities=9% Similarity=-0.042 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCcCHHHHHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGF--VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG--IKPNQTIFTTIM 418 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~l~ 418 (557)
++..++..+.+.|++++|.+.|..+..... +.....+..+..++.+.|+++.|...|+.+.... .+.....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666666666666666654320 1112344556666666666666666666666431 111134455566
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 008708 419 DAYGKNKDFDSAVVWYKEMESC 440 (557)
Q Consensus 419 ~~~~~~g~~~~A~~~~~~m~~~ 440 (557)
.++.+.|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666666653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00035 Score=52.56 Aligned_cols=97 Identities=20% Similarity=0.153 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 008708 378 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK 457 (557)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 457 (557)
++..++..+...|++++|..+++++.+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 35567788889999999999999998753 3445778888899999999999999999998753 445568888889999
Q ss_pred hcCCHHHHHHHHHhcCCCC
Q 008708 458 TADERNEANELLGNFNHPN 476 (557)
Q Consensus 458 ~~g~~~~a~~~~~~~~~~~ 476 (557)
..|+++.|...+....+..
T Consensus 80 ~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 80 KLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHhHHHHHHHHHHHHccC
Confidence 9999999999998876443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0012 Score=52.38 Aligned_cols=96 Identities=19% Similarity=0.169 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGY--APSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP--SALTYQIIL 173 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~ll 173 (557)
++..++..+.+.|++++|.+.|+.+..... +.....+..+..++.+.|+++.|...|+.+....+.. ...++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455555555555555555555544320 0012344445555555555555555555554432221 133344444
Q ss_pred HHHHHcCCHHHHHHHHHHhH
Q 008708 174 KLFVEANKFKEAEEVFMTLL 193 (557)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~ 193 (557)
.++.+.|+.++|.+.++.++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHhCChHHHHHHHHHHH
Confidence 45555555555555555554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00045 Score=58.85 Aligned_cols=81 Identities=7% Similarity=-0.009 Sum_probs=48.9
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAP--SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 173 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 173 (557)
...|..++..+...|++++|...|++.......+ ...+|..+...+...|++++|+..+++.....+. ...++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 4455666667777777777777777776542111 1246667777777777777777777776654222 334444444
Q ss_pred HHHH
Q 008708 174 KLFV 177 (557)
Q Consensus 174 ~~~~ 177 (557)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0096 Score=55.61 Aligned_cols=273 Identities=12% Similarity=0.032 Sum_probs=123.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 008708 104 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFK 183 (557)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 183 (557)
..+.+..++..|+..+....+.. +.++..|..-...+...|++++|+--.+.-++.... ......-.-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHH
Confidence 34455666677777777776664 334556666666666777777776666555443221 1122223333333344444
Q ss_pred HHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHH----hcccCCHHHHHHH
Q 008708 184 EAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQ-QSTVTYNSL----MSFETNYKEVSKI 258 (557)
Q Consensus 184 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l----l~~~~~~~~a~~~ 258 (557)
+|.+.++... .+ ....|+..++........ |.-.+|..+ +...+++++|...
T Consensus 135 ~A~~~~~~~~------------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 135 EAEEKLKSKQ------------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHhhhhh------------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 4443333110 00 011111111111111100 111111111 1113444444443
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-------------HHHHHHHHHHcCCHHHH
Q 008708 259 YDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKA-------------YNILLDAFAISGMVDQA 325 (557)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~~A 325 (557)
--.+.+.... +......-..++.-.++.+.|...|++.+..+ |+... +..=.+...+.|.+..|
T Consensus 192 a~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 192 AIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 3333332111 11111112223334455566666666555432 32221 11112334466777777
Q ss_pred HHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 326 RTVFKCMRRD---RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKM 402 (557)
Q Consensus 326 ~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (557)
.+.+.+.+.. +..|+...|.....+..+.|+..+|+.--++..+.+ +.-...|..-..++.-.++|++|.+.|++.
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766543 334455556666666666777777776666665432 111223333344444556667777666666
Q ss_pred HHC
Q 008708 403 RVN 405 (557)
Q Consensus 403 ~~~ 405 (557)
.+.
T Consensus 348 ~q~ 350 (486)
T KOG0550|consen 348 MQL 350 (486)
T ss_pred Hhh
Confidence 543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0021 Score=52.34 Aligned_cols=95 Identities=9% Similarity=0.019 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 422 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 422 (557)
....+..-+...|++++|..+|+-+.... +-+..-|..|.-+|-..|++++|+..|....... +.|+..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 34444455556666666666666665543 4455556666666666677777777776666554 345666666666666
Q ss_pred hcCChhHHHHHHHHHHh
Q 008708 423 KNKDFDSAVVWYKEMES 439 (557)
Q Consensus 423 ~~g~~~~A~~~~~~m~~ 439 (557)
..|+.+.|.+.|+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777766666654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0006 Score=51.28 Aligned_cols=78 Identities=18% Similarity=0.330 Sum_probs=63.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKGY-APSVVSHTALMEAYGRGG--------RYKNAEAIFRRMQSSGPRPSALTYQI 171 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~~~ 171 (557)
..|..+...+++...-.+|+.+.+.|+ .|++.+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 456666666999999999999999998 899999999998877653 34567788888888888999999998
Q ss_pred HHHHHHH
Q 008708 172 ILKLFVE 178 (557)
Q Consensus 172 ll~~~~~ 178 (557)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8877653
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00083 Score=54.61 Aligned_cols=95 Identities=9% Similarity=0.035 Sum_probs=64.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 177 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 177 (557)
....+..-+...|++++|..+|+.+.... +-+..-|..|..++-..|++++|+..|......++ .|+..+..+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 34455666667777777777777776654 23566666777777777777777777777766654 36666777777777
Q ss_pred HcCCHHHHHHHHHHhHh
Q 008708 178 EANKFKEAEEVFMTLLD 194 (557)
Q Consensus 178 ~~g~~~~A~~~~~~~~~ 194 (557)
..|+.+.|.+.|+.++.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777777664
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0033 Score=53.73 Aligned_cols=89 Identities=11% Similarity=0.098 Sum_probs=65.6
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 95 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS--VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQII 172 (557)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 172 (557)
....+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|+..+.+.....+. +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 345677888888888999999999998876532221 467888888888899999999999888876433 56666677
Q ss_pred HHHHHHcCCHHH
Q 008708 173 LKLFVEANKFKE 184 (557)
Q Consensus 173 l~~~~~~g~~~~ 184 (557)
...+...|+...
T Consensus 113 g~~~~~~g~~~~ 124 (172)
T PRK02603 113 AVIYHKRGEKAE 124 (172)
T ss_pred HHHHHHcCChHh
Confidence 777777776433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0036 Score=53.50 Aligned_cols=84 Identities=11% Similarity=0.048 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPD--ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKG 385 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 385 (557)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..... +.+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444445555555555555555443321111 2344444445555555555555555444432 2233344444444
Q ss_pred HHHcCCH
Q 008708 386 YAKVNNL 392 (557)
Q Consensus 386 ~~~~g~~ 392 (557)
+...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 4444443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0013 Score=49.50 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=12.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 360 AEKFFRRLKQDGFVPNVITYGTLIKGY 386 (557)
Q Consensus 360 A~~~~~~m~~~~~~p~~~~~~~l~~~~ 386 (557)
.+.+|+.|...+++|+..+|+.++..+
T Consensus 88 LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 88 LLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 344444444444444444444444433
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0023 Score=61.68 Aligned_cols=86 Identities=8% Similarity=-0.036 Sum_probs=39.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 317 AISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMM 396 (557)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 396 (557)
...|+++.|+..|++.++.. +.+...|..+..+|...|++++|+..+++++... +.+...|..+..+|...|++++|.
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34444444444444444332 2233444444444444555555555555444432 334444444444555555555555
Q ss_pred HHHHHHHH
Q 008708 397 EIYDKMRV 404 (557)
Q Consensus 397 ~~~~~m~~ 404 (557)
..|++.++
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 55555444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.027 Score=52.54 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 008708 273 SYALLINAYGKARREEEALAVFEEMLDAGVR-----PTHK-AYNILLDAFAISGMVDQARTVFKCMRRD 335 (557)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 335 (557)
.+..++..+.+.|++++|.++|++....... .+.. .+...+-++...||...|...|++....
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556666777777777777777776553221 1111 2233333555667777777777766543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.029 Score=52.28 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 208 HMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 208 ~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
......|...|++++|...|.+...
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHH
Confidence 3334566667777777777766543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0021 Score=54.67 Aligned_cols=26 Identities=4% Similarity=-0.036 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLK 368 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (557)
++..+...+...|++++|+..++...
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00018 Score=53.02 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChhHHHH
Q 008708 355 SDMEGAEKFFRRLKQDGFV-PNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVV 432 (557)
Q Consensus 355 g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 432 (557)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..++++ .+. .|+ ......+..+|.+.|++++|+.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4455555555555443210 1223333345555555555555555544 211 111 2222333445555555555555
Q ss_pred HHHH
Q 008708 433 WYKE 436 (557)
Q Consensus 433 ~~~~ 436 (557)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00016 Score=53.21 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=19.9
Q ss_pred CChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 008708 110 GDFNKAEKVLSFMNKKGYA-PSVVSHTALMEAYGRGGRYKNAEAIFRR 156 (557)
Q Consensus 110 g~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 156 (557)
|+++.|+.+|+++.+.... ++...+..+..+|.+.|++++|+.++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444555555554443210 0222333344445555555555555444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.002 Score=59.80 Aligned_cols=131 Identities=18% Similarity=0.167 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 97 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR-GGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 175 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 175 (557)
.+|..++....+.+..+.|+.+|.+..+.+ ..+...|-.....-.. .++.+.|..+|+...+. ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467788888888888999999999888653 2234445444444223 56677799999988776 45577788888888
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008708 176 FVEANKFKEAEEVFMTLLDEEKSPLKPD---QKMFHMMIYMYKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 233 (557)
+...|+.+.|..+|++.+. .++++ ...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~----~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAIS----SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCC----TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHH----hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8889999999999999874 22222 258888888888889999988888888764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0023 Score=59.47 Aligned_cols=131 Identities=15% Similarity=0.104 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----C-CCCCHH
Q 008708 273 SYALLINAYGKARREEEALAVFEEML----DAGVR-PTHKAYNILLDAFAISGMVDQARTVFKCMRRD----R-CSPDIC 342 (557)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~ 342 (557)
.|..|.+.|.-.|+++.|+...+.-+ +-|-+ .....+..|.+++.-.|+++.|.+.|+.-... | -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 46666666777777777776665432 22211 12335667777777778888887777654321 1 112334
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQD-----GFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 403 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (557)
+..+|...|.-..++++|+.++.+-+.. ...-....+.+|..+|...|..++|+.+.+..+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4556677777777777787777653321 122345667778888888888888877766654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.02 Score=57.81 Aligned_cols=162 Identities=10% Similarity=0.035 Sum_probs=94.6
Q ss_pred CCCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHc--------CCHHHHHHHHHHH
Q 008708 302 VRPTHKAYNILLDAFAIS--G---MVDQARTVFKCMRRDRCSPD-ICSYTTMLSAYVNA--------SDMEGAEKFFRRL 367 (557)
Q Consensus 302 ~~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~--------g~~~~A~~~~~~m 367 (557)
.+.+...|...+.+.... + ....|..+|++..+. .|+ ...|..+..++... .+...+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 345556666666654322 2 255677777776655 233 23333333322221 1223344444443
Q ss_pred HhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 008708 368 KQD-GFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 446 (557)
Q Consensus 368 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 446 (557)
... ..+.+...|..+.-.....|++++|...++++.+. .|+...|..+...+...|+.++|...++++.. +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 332 13445677777777777778888888888888875 46778888888888888888888888888876 45665
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHH
Q 008708 447 KAKNILLSLAKTADERNEANELLG 470 (557)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~a~~~~~ 470 (557)
.+|.. ...+.-.-+.+...-++.
T Consensus 487 pt~~~-~~~~~f~~~~~~~~~~~~ 509 (517)
T PRK10153 487 NTLYW-IENLVFQTSVETVVPYLY 509 (517)
T ss_pred chHHH-HHhccccccHHHHHHHHH
Confidence 55432 222222334444444433
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00013 Score=41.72 Aligned_cols=29 Identities=34% Similarity=0.612 Sum_probs=14.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKG 126 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 126 (557)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34455555555555555555555554443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00011 Score=42.00 Aligned_cols=30 Identities=23% Similarity=0.534 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 008708 133 SHTALMEAYGRGGRYKNAEAIFRRMQSSGP 162 (557)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 162 (557)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888887663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.033 Score=46.22 Aligned_cols=127 Identities=13% Similarity=0.076 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHH
Q 008708 303 RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG---FVPNVITY 379 (557)
Q Consensus 303 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~ 379 (557)
.|+...-..|..+....|+..+|...|++....-...|....-.+.++....+++..|...++.+.+.+ -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 455555555666666666666666666666554444455555556666666666666666666655432 1122 22
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 008708 380 GTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVW 433 (557)
Q Consensus 380 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 433 (557)
-.+...+...|.+..|..-|+..... -|+...-......+.+.|+.++|..-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 33455555566666666666666553 34443333334444555555554433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0085 Score=60.45 Aligned_cols=142 Identities=7% Similarity=-0.047 Sum_probs=103.3
Q ss_pred CCCCCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q 008708 335 DRCSPDICSYTTMLSAYVNA--S---DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN--------NLEKMMEIYDK 401 (557)
Q Consensus 335 ~~~~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g--------~~~~a~~~~~~ 401 (557)
...+.+...|...+.+.... + +...|..+|++..+.. |-+...|..+..++.... +...+.+...+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34467888898888875443 2 3779999999999874 444566666555544321 23344444444
Q ss_pred HHHC-CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCC
Q 008708 402 MRVN-GIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEP 479 (557)
Q Consensus 402 m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 479 (557)
.... ....++..|..+.-.....|++++|...++++++ +.|+...|..+...+...|+.++|.+.+++....++..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 4332 2344567888887777778999999999999999 45788889999999999999999999999987666643
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0074 Score=47.33 Aligned_cols=93 Identities=19% Similarity=0.118 Sum_probs=61.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHH
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKGYAPS--VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PSALTYQIILKLF 176 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~ll~~~ 176 (557)
.+..++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|+.++++.....+. .+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 455566677888888888888887775443 345666777788888888888888877664322 1222223334466
Q ss_pred HHcCCHHHHHHHHHHhH
Q 008708 177 VEANKFKEAEEVFMTLL 193 (557)
Q Consensus 177 ~~~g~~~~A~~~~~~~~ 193 (557)
...|+.++|.+.+-..+
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 77788888887776654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0029 Score=58.70 Aligned_cols=143 Identities=16% Similarity=0.231 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 307 KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN-ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKG 385 (557)
Q Consensus 307 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 385 (557)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|......-.+ .++.+.|.++|+...+. ++.+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467777777777777888888888887442 2234445544444333 56666688888887765 46677777777888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 386 YAKVNNLEKMMEIYDKMRVNGIKPNQ---TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS 454 (557)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 454 (557)
+.+.++.+.|..+|++.... +.++. ..|...+.-=.+.|+++.+..+.+++.+ ..|+...+..+..
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHH
Confidence 88888888888888888754 23222 4777777777778888888888888877 3455333433443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.082 Score=47.79 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 276 LLINAYGKARREEEALAVFEEMLDA--GVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 333 (557)
Q Consensus 276 ~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 333 (557)
.+...|.+.|.+..|..-++.+++. +.+........++.+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4556677778887777777777764 122233455666677777777777776665443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0039 Score=53.29 Aligned_cols=104 Identities=17% Similarity=0.342 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 008708 304 PTHKAYNILLDAFAI-----SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVIT 378 (557)
Q Consensus 304 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 378 (557)
.+..+|..+++.|.+ .|..+=....++.|.+.|+..|..+|+.|+..+-+ |.+ .|....
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n~f 108 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRNFF 108 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------ccccHH
Confidence 355555555555543 24555556666666666777777777777666543 221 111111
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 008708 379 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD 426 (557)
Q Consensus 379 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 426 (557)
..+...| -.+-+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 109 -Q~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 -QAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -HHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111 12346678888888888888888888888888876655
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.06 Score=48.67 Aligned_cols=183 Identities=11% Similarity=0.034 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 271 VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKA---YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 347 (557)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 347 (557)
...+-.....+...|++++|...|+++...- +-+... .-.++.++.+.+++++|...+++..+........-+...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3333344555667788888888888887653 222222 245566777888888888888887765322222233333
Q ss_pred HHHHHH--cC---------------C---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 008708 348 LSAYVN--AS---------------D---MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI 407 (557)
Q Consensus 348 i~~~~~--~g---------------~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 407 (557)
+.+.+. .+ + ..+|+..|+.+++. -|+ ..-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH--
Confidence 333221 11 1 12344444444443 222 22334444433333321
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 408 KPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESC--GFPPDQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 408 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
=...--.+..-|.+.|.+..|..-++.+++. +.+........+..+|...|..++|......+.
T Consensus 174 --la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 --LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred --HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0111224556688889999999888888863 222334567777788999999999988776553
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0025 Score=56.96 Aligned_cols=95 Identities=17% Similarity=0.178 Sum_probs=51.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 317 AISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMM 396 (557)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 396 (557)
.+.+++.+|+..|.+.++.. +.|++.|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|++++|.
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 34555555555555555442 3345555555555666666666555555555443 233445666666666666666666
Q ss_pred HHHHHHHHCCCCcCHHHHH
Q 008708 397 EIYDKMRVNGIKPNQTIFT 415 (557)
Q Consensus 397 ~~~~~m~~~~~~p~~~~~~ 415 (557)
+.|++.++ +.|+-.+|-
T Consensus 170 ~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHhhhc--cCCCcHHHH
Confidence 66666554 344444443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0042 Score=53.09 Aligned_cols=88 Identities=19% Similarity=0.343 Sum_probs=70.0
Q ss_pred CCHhhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CChHHHHH
Q 008708 94 FNEMDFLMLITAYGKQ-----GDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRG----------------GRYKNAEA 152 (557)
Q Consensus 94 ~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~----------------g~~~~A~~ 152 (557)
.+..+|..+++.|.+. |.++-....+..|.+.|+..|..+|+.|++.+=+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3567777778777754 77888888999999999999999999999986431 23467888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 153 IFRRMQSSGPRPSALTYQIILKLFVEANK 181 (557)
Q Consensus 153 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 181 (557)
++++|...|+.||..++..++..+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88888888888888888888888766554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.21 Score=50.75 Aligned_cols=108 Identities=14% Similarity=0.162 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 422 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 422 (557)
+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+.+. .+.-|...+.+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 44444555556666666666655543 4566666666666666666665544433322 1344555666666
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 008708 423 KNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELL 469 (557)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 469 (557)
+.|+.++|.+++-+... .. -...+|.+.|++.+|..+-
T Consensus 756 ~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 66666666666655421 11 2344455555555554443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.018 Score=47.77 Aligned_cols=126 Identities=17% Similarity=0.227 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH
Q 008708 129 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH 208 (557)
Q Consensus 129 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 208 (557)
|++.--..|..++...|+..+|...|++...--.--|......+.++....+++..|...++.+.+....+-.||. .-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hH
Confidence 4444445555555555555555555555544322334455555555555555555555555555543333333332 23
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHhcccCCHHHHH
Q 008708 209 MMIYMYKKAGGYEKARKLFALMAERGVQQS-TVTYNSLMSFETNYKEVS 256 (557)
Q Consensus 209 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~a~ 256 (557)
.+.+.+...|.+..|..-|+.....-..|. ...|..++...|+.+++.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHH
Confidence 344555555555555555555554433232 233444444455444443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.016 Score=52.33 Aligned_cols=101 Identities=12% Similarity=0.010 Sum_probs=75.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCcCHHHH
Q 008708 338 SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN---NLEKMMEIYDKMRVNGIKPNQTIF 414 (557)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~ 414 (557)
+-|...|-.|..+|...|++..|...|.+..+.. +++...+..+..++.... ...++..+|+++...+ +-|....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4577788888888888888888888888887763 567777777777666543 3567788888888754 4456677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 008708 415 TTIMDAYGKNKDFDSAVVWYKEMESC 440 (557)
Q Consensus 415 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 440 (557)
..+...+...|++.+|...|+.|++.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 77777788888888888888888874
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.014 Score=52.62 Aligned_cols=111 Identities=13% Similarity=0.062 Sum_probs=89.6
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhC
Q 008708 364 FRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNK---DFDSAVVWYKEMESC 440 (557)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~ 440 (557)
++.-...+ |-|...|..|..+|...|++..|..-|.+..+.. ++++..+..+..++..+. ...++..+|++++..
T Consensus 145 Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 145 LETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 33334444 7799999999999999999999999999999863 567888888888765433 346889999999984
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC
Q 008708 441 GFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNN 477 (557)
Q Consensus 441 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (557)
. +-|......|...+...|++.+|...++.|.+..+
T Consensus 223 D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 223 D-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred C-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 3 44556788888899999999999999999986655
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.068 Score=50.73 Aligned_cols=84 Identities=19% Similarity=0.226 Sum_probs=41.0
Q ss_pred CChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCC--CCHhhHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHH
Q 008708 58 LPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWD--FNEMDFLMLITAYGK---QGDFNKAEKVLSFMNKKGYAPSVV 132 (557)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~~~~~ 132 (557)
...+.+...++.++...+|+...++.+-+.....++ .++.+-....-++-+ .|+.++|++++..+....-.++..
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 344445555555555556666666655555543211 112222233334444 556666666665544443345555
Q ss_pred HHHHHHHHH
Q 008708 133 SHTALMEAY 141 (557)
Q Consensus 133 ~~~~li~~~ 141 (557)
+|..+.+.|
T Consensus 219 ~~gL~GRIy 227 (374)
T PF13281_consen 219 TLGLLGRIY 227 (374)
T ss_pred HHHHHHHHH
Confidence 555555544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.023 Score=44.56 Aligned_cols=18 Identities=0% Similarity=0.268 Sum_probs=6.8
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 008708 384 KGYAKVNNLEKMMEIYDK 401 (557)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~ 401 (557)
..+...|++++|..++++
T Consensus 46 stlr~LG~~deA~~~L~~ 63 (120)
T PF12688_consen 46 STLRNLGRYDEALALLEE 63 (120)
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 333333333333333333
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0012 Score=46.35 Aligned_cols=61 Identities=18% Similarity=0.203 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-ChhHHHHHHHHHH
Q 008708 377 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNK-DFDSAVVWYKEME 438 (557)
Q Consensus 377 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~ 438 (557)
.+|..+...+...|++++|+..|++.++.. +.+...|..+..++...| ++++|++.+++.+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444444444444444444444432 222344444444444444 3444444444444
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0013 Score=46.16 Aligned_cols=63 Identities=21% Similarity=0.189 Sum_probs=36.9
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG-RYKNAEAIFRRMQS 159 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 159 (557)
+..|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455566666666666666666666665553 224555666666666666 46666666665544
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0016 Score=45.12 Aligned_cols=58 Identities=24% Similarity=0.254 Sum_probs=36.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 008708 102 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS 160 (557)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 160 (557)
+...+.+.|++++|.+.|+++.+.. +-+...|..+..++...|++++|...|+++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455666666666666666666654 335556666666666666666666666666553
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0017 Score=44.95 Aligned_cols=55 Identities=7% Similarity=0.216 Sum_probs=24.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 384 KGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
..+...|++++|...|+++++.. +-+...+..+..++...|++++|..+|+++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444445555555555444432 22344444444444455555555555544443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0019 Score=45.15 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=19.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 389 VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 389 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
.|++++|.++|+++.... +-+...+..++.+|.+.|++++|..+++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444443321 22333333444444444444444444444443
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0021 Score=44.95 Aligned_cols=62 Identities=15% Similarity=0.243 Sum_probs=45.2
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 008708 352 VNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTT 416 (557)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 416 (557)
...|++++|+++|+.+.... |-+...+..++.+|.+.|++++|..+++++... .|+...|..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~ 63 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQ 63 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHH
Confidence 46788888888888887764 557777778888888888888888888888764 455444433
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.42 Score=48.23 Aligned_cols=323 Identities=11% Similarity=0.097 Sum_probs=165.5
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 008708 94 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKK-GYA--------PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRP 164 (557)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 164 (557)
|.+..|..|.......-.++-|...|-+.... |++ .+...-.+=+.+| -|++++|.++|-+|-+..
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh---
Confidence 56777877777777777777777776554432 111 0111111222222 478888888887764331
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 008708 165 SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLK--PDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTY 242 (557)
Q Consensus 165 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 242 (557)
..+..+.+.|++-...++++.- .++.. .-...++.+...++....|++|.+.|...... .-+
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------e~~ 828 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------ENQ 828 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------HhH
Confidence 2355667778887777776543 11111 11357888899999999999999888664321 111
Q ss_pred HHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 008708 243 NSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMV 322 (557)
Q Consensus 243 ~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 322 (557)
..-+-....+++.+.+.+. ++-+....-.+..++.+.|.-++|.+.|-+. + .|. +.+..|...++|
T Consensus 829 ~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHHHHHHH
Confidence 1111111222222222222 2334455566777888888888877766543 1 122 234556667777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCCHH----HHH
Q 008708 323 DQARTVFKCMRRDRCSPDICSY--------------TTMLSAYVNASDMEGAEKFFRRLKQ----DGFVPNVI----TYG 380 (557)
Q Consensus 323 ~~A~~~~~~~~~~~~~~~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~----~~~ 380 (557)
.+|.++-+... -|.+.+. .-.|..+.+.|+.-.|.+++.+|.+ .+.+|-.. ...
T Consensus 895 ~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~ 970 (1189)
T KOG2041|consen 895 GEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLG 970 (1189)
T ss_pred HHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHH
Confidence 77777655432 1122111 1123345556666666666666643 23332211 111
Q ss_pred HH-HHHH----------HHcCCHHHHHHHHHHHHHC---CC----Cc--CHHHHHHHHHHHHhcCChhHHHHHHHHHHh-
Q 008708 381 TL-IKGY----------AKVNNLEKMMEIYDKMRVN---GI----KP--NQTIFTTIMDAYGKNKDFDSAVVWYKEMES- 439 (557)
Q Consensus 381 ~l-~~~~----------~~~g~~~~a~~~~~~m~~~---~~----~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~- 439 (557)
++ +.-+ -+.|..++|..+++.-.-. .+ -. ...+|..+..--...|..+.|++.--.+.+
T Consensus 971 AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DY 1050 (1189)
T KOG2041|consen 971 ALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDY 1050 (1189)
T ss_pred HHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccH
Confidence 11 1111 1235555555544432210 00 01 123344444445567888888776544443
Q ss_pred CCCCCCHHHHHHHHHH
Q 008708 440 CGFPPDQKAKNILLSL 455 (557)
Q Consensus 440 ~~~~p~~~~~~~l~~~ 455 (557)
..+-|...+|..+.-+
T Consensus 1051 Ed~lpP~eiySllALa 1066 (1189)
T KOG2041|consen 1051 EDFLPPAEIYSLLALA 1066 (1189)
T ss_pred hhcCCHHHHHHHHHHH
Confidence 2345555666655543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.16 Score=44.70 Aligned_cols=48 Identities=21% Similarity=0.318 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHH
Q 008708 276 LLINAYGKARREEEALAVFEEMLDAGVRPTH----KAYNILLDAFAISGMVDQA 325 (557)
Q Consensus 276 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A 325 (557)
.+...|.+.|.+..|..-++.+++. -|+. .....++.+|.+.|..+.+
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 3566788888888888888887765 2332 2445666777777766643
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.043 Score=48.20 Aligned_cols=129 Identities=10% Similarity=0.050 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----HH
Q 008708 275 ALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM-----LS 349 (557)
Q Consensus 275 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-----i~ 349 (557)
+.++..+.-.|.+.-...++++.++...+.++.....|+..-.+.|+.+.|...|++..+.....+..+++.+ ..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 3444444455555555555555555444445555555555555566666666666554433222222222222 22
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 350 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 404 (557)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (557)
.|.-++++..|...+.+....+ +.|+...|.-.-+....|+...|.+.++.|..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334445555555555444433 33344444333334444555555555555554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.5 Score=48.13 Aligned_cols=88 Identities=10% Similarity=0.063 Sum_probs=44.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR--YKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 178 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 178 (557)
.+++-+...+.+..|+++-..+...-.. ....|......+.+..+ -+++++..++=.+... ....+|..+.+....
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHh
Confidence 3566666677777777766655432111 13445555555555422 1223333322222211 234456666666666
Q ss_pred cCCHHHHHHHHH
Q 008708 179 ANKFKEAEEVFM 190 (557)
Q Consensus 179 ~g~~~~A~~~~~ 190 (557)
.|+++-|..+++
T Consensus 520 ~GR~~LA~kLle 531 (829)
T KOG2280|consen 520 EGRFELARKLLE 531 (829)
T ss_pred cCcHHHHHHHHh
Confidence 777777766654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.24 Score=43.73 Aligned_cols=162 Identities=9% Similarity=0.024 Sum_probs=115.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 281 YGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGA 360 (557)
Q Consensus 281 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (557)
+......+..++.|++-.. .+-+.++..+.-.|.+.-....+++.++...+.++.....+++.-.+.|+.+.|
T Consensus 159 ~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a 231 (366)
T KOG2796|consen 159 LEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTA 231 (366)
T ss_pred HHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHH
Confidence 3333334555666655432 345667777777888999999999999887777889999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHH
Q 008708 361 EKFFRRLKQDGFVPNVITYG-----TLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYK 435 (557)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~-----~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 435 (557)
..+|++..+..-+.|..+++ .....|.-+.++..|...+.+....+ +.|+...|.-.-+..-.|+...|++.++
T Consensus 232 ~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e 310 (366)
T KOG2796|consen 232 EKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLE 310 (366)
T ss_pred HHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHH
Confidence 99999876643344444433 33444556778889999998888654 3455555655555666899999999999
Q ss_pred HHHhCCCCCCHHHHHHH
Q 008708 436 EMESCGFPPDQKAKNIL 452 (557)
Q Consensus 436 ~m~~~~~~p~~~~~~~l 452 (557)
.|.. ..|.+.+.+.+
T Consensus 311 ~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 311 AMVQ--QDPRHYLHESV 325 (366)
T ss_pred HHhc--cCCccchhhhH
Confidence 9987 46666555433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.34 Score=45.39 Aligned_cols=203 Identities=14% Similarity=0.148 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHH---HcCCHHHHHHHHHHHHhCCCCCCHHH-
Q 008708 271 VVSYALLINAYGKARREEEALAVFEEMLDAG-VRPTHK--AYNILLDAFA---ISGMVDQARTVFKCMRRDRCSPDICS- 343 (557)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~- 343 (557)
...+...+...+..|+|+.|+++++.-.... +.++.. .-..|+.+-. -.-+...|...-.+..+ +.|+..-
T Consensus 188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPa 265 (531)
T COG3898 188 PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPA 265 (531)
T ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchH
Confidence 4567788888999999999999998766543 233332 1122222211 12344555554444433 3555433
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCcC-HHHHHHHHHHH
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN-GIKPN-QTIFTTIMDAY 421 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~-~~~~~~l~~~~ 421 (557)
-.....++.+.|+..++-.+++.+.+.. |.+..+ ..|.+...-+.+..-+++..+. .++|| ......+..+.
T Consensus 266 av~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aA 339 (531)
T COG3898 266 AVVAARALFRDGNLRKGSKILETAWKAE--PHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAA 339 (531)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 2334568899999999999999998874 444433 2344333334444444444321 23444 66777788888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHhcCCCCCCCCccc
Q 008708 422 GKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK-TADERNEANELLGNFNHPNNEPGING 483 (557)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~ 483 (557)
...|++..|..--+.... ..|....|..+...-. ..|+-.+++..+-+..+...+|....
T Consensus 340 lda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~a 400 (531)
T COG3898 340 LDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWTA 400 (531)
T ss_pred HhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcccc
Confidence 899999988887777765 5788888888887654 45999999999988876655565443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.031 Score=46.19 Aligned_cols=71 Identities=11% Similarity=0.236 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCCCCHHHHH
Q 008708 379 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME-----SCGFPPDQKAKN 450 (557)
Q Consensus 379 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~~~ 450 (557)
...++..+...|++++|..+++.+.... +.+...|..++.+|...|+..+|.+.|+.+. +.|+.|++.+-.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4456666777888888888888887653 4567788888888888888888888887764 357777776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.039 Score=50.32 Aligned_cols=101 Identities=12% Similarity=0.134 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 008708 132 VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS--ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 209 (557)
Q Consensus 132 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 209 (557)
..|...+..+.+.|++++|+..|+.+++..+... +.++..+..+|...|++++|...|+.+++... ..+.....+..
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~k 222 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHHH
Confidence 3455555555667899999999999887654321 35677788888899999999999999885321 11223445666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 008708 210 MIYMYKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~~~~~ 233 (557)
++.++...|+.++|..+|+.+.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 677788889999999999888775
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.098 Score=43.02 Aligned_cols=92 Identities=14% Similarity=0.013 Sum_probs=69.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 008708 346 TMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNK 425 (557)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 425 (557)
....-+...|++++|..+|+-+...+ +-+..-+..|..+|-..+++++|...|......+ .-|+..+-....++...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhC
Confidence 34445567888888888888877665 4566667788888888888899988888876543 235555666777888888
Q ss_pred ChhHHHHHHHHHHh
Q 008708 426 DFDSAVVWYKEMES 439 (557)
Q Consensus 426 ~~~~A~~~~~~m~~ 439 (557)
+.+.|...|+...+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 88999888888876
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.1 Score=51.82 Aligned_cols=36 Identities=11% Similarity=0.380 Sum_probs=21.3
Q ss_pred HHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHH
Q 008708 226 LFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQ 261 (557)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~ 261 (557)
-+++++++|-.|+...........|++.+|-++|.+
T Consensus 622 EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHH
Confidence 345555666666666666666666666666665543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.26 Score=43.33 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=31.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008708 172 ILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 172 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 233 (557)
....+...|++.+|.+.|+.+...-+ +.+--......++.++.+.|+++.|...++...+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P-~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYP-NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33445566666666666666654311 11112234445566666666666666666666554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.038 Score=50.40 Aligned_cols=94 Identities=11% Similarity=0.025 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCcCHHHHHHH
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVNG--IKPNQTIFTTI 417 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~l 417 (557)
|...+..+.+.|++++|...|+.+.+.. |+ ...+..++.+|...|++++|...|+.+.+.- -+.....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3333333344566666666666665542 22 2345556666666666666666666666431 11123344444
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 008708 418 MDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 418 ~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+.++...|+.++|..+|+.+++
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555566666666666666665
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.5 Score=44.68 Aligned_cols=269 Identities=12% Similarity=-0.002 Sum_probs=147.3
Q ss_pred HhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCh
Q 008708 69 RLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRY 147 (557)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~ 147 (557)
.+.+..++..|+..+..+++..+ .+..-|..-...+...|++++|.--.+.-.+. .|. ...+.-.-.++...+..
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~p--d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCP--DNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCc--cchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHH
Confidence 34556678889999988888752 44555666777777788888877665554443 121 22333333444444444
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHH-HHHHHHcCCHHHHHHH
Q 008708 148 KNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMM-IYMYKKAGGYEKARKL 226 (557)
Q Consensus 148 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~ 226 (557)
.+|.+.++. ...+ ....|+..++.+.. ...-+|.-..+-.| ..++...|++++|...
T Consensus 134 i~A~~~~~~---------~~~~-----------~~anal~~~~~~~~--s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 134 IEAEEKLKS---------KQAY-----------KAANALPTLEKLAP--SHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHhhh---------hhhh-----------HHhhhhhhhhcccc--cccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 444444431 1111 11112222222221 00111222222222 2244445555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHhc-----ccCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCCHHHH
Q 008708 227 FALMAERGVQQSTVTYNSLMS-----FETNYKEVSKIYDQMQRAGLQPD-----------VVSYALLINAYGKARREEEA 290 (557)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~ll~-----~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A 290 (557)
--..++.. ....+...++ ...+.+.+...|++.+..++.-. ...+..-.+-..+.|++..|
T Consensus 192 a~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 192 AIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 54444431 1112222222 13445555555555544321100 11122234456789999999
Q ss_pred HHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHH
Q 008708 291 LAVFEEMLDA---GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDIC---SYTTMLSAYVNASDMEGAEKFF 364 (557)
Q Consensus 291 ~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~ 364 (557)
.+.|.+.+.. ...|+...|.....+..+.|+.++|+.--+....- |.. .|..-..++...+++++|.+-|
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998764 34556667888888889999999999988887754 433 2333344666778899999999
Q ss_pred HHHHhC
Q 008708 365 RRLKQD 370 (557)
Q Consensus 365 ~~m~~~ 370 (557)
+...+.
T Consensus 345 ~~a~q~ 350 (486)
T KOG0550|consen 345 EKAMQL 350 (486)
T ss_pred HHHHhh
Confidence 887765
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0097 Score=42.24 Aligned_cols=54 Identities=7% Similarity=0.092 Sum_probs=28.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 385 GYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
.|.+.+++++|.++++.+...+ +.+...|.....++.+.|++++|...++...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455555555555555555542 23344455555555555555555555555554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.54 Score=44.84 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=54.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHH
Q 008708 95 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKG---YAPSVVSHTALMEAYGR---GGRYKNAEAIFRRMQSSGPRPSALT 168 (557)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~ 168 (557)
++.+...++-.|....+++..+++.+.+...- +..+...--...-++.+ .|+.++|++++..+......+++.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34445566667888888888888888887641 11122223344455666 7888888888888665556677778
Q ss_pred HHHHHHHH
Q 008708 169 YQIILKLF 176 (557)
Q Consensus 169 ~~~ll~~~ 176 (557)
|..+.+.|
T Consensus 220 ~gL~GRIy 227 (374)
T PF13281_consen 220 LGLLGRIY 227 (374)
T ss_pred HHHHHHHH
Confidence 87777665
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.55 Score=44.26 Aligned_cols=108 Identities=16% Similarity=0.188 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 422 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 422 (557)
+.+..+.-+...|+...|.++-++.. .|+..-|...+.+++..++|++..++-.. +-.+.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 45666777788888888888876653 57888888899999999999887765332 123477888889999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 008708 423 KNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLG 470 (557)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 470 (557)
+.|+..+|..++..+ ++ ..-+..|.+.|++.+|.+.--
T Consensus 249 ~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHH
Confidence 999999988888762 22 223445566666666655543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.008 Score=42.67 Aligned_cols=58 Identities=21% Similarity=0.165 Sum_probs=38.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 008708 104 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP 162 (557)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 162 (557)
..|.+.+++++|.++++.+...+ |.+...|.....++...|++++|.+.|+...+.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45666777777777777776664 33566666666777777777777777777666443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0094 Score=42.98 Aligned_cols=65 Identities=22% Similarity=0.411 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 167 LTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLK---PD-QKMFHMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 167 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
.+|..+...|...|++++|+..|+++++. ..... |+ ..+++.+..+|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555556666666666666666665543 11111 11 34566777777778888888877776553
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.012 Score=42.39 Aligned_cols=61 Identities=18% Similarity=0.453 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CcC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008708 378 TYGTLIKGYAKVNNLEKMMEIYDKMRVN----GI-KPN-QTIFTTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+..++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555555421 10 111 3445555555666666666666655544
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.81 Score=43.17 Aligned_cols=109 Identities=19% Similarity=0.192 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 387 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 387 (557)
+.+..+.-+...|+...|.++-++.. -|+..-|...+.+++..++|++-.++... +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555666777888888877766553 57888899999999999999887776432 123467888899999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008708 388 KVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKE 436 (557)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 436 (557)
+.|+..+|..+..++ + +..-+..|.+.|++.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999998887772 2 24456678888999888776544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.037 Score=45.75 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCcCHHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV-----NGIKPNQTIFT 415 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~ 415 (557)
+...++..+...|++++|..+.+.+.... |.+...|..+|.+|...|+...|.+.|+++.. .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 44556667778888888888888888765 66778888888888888888888888887753 47788776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.99 Score=43.39 Aligned_cols=73 Identities=12% Similarity=0.059 Sum_probs=46.5
Q ss_pred hhccchHHHHHHHHHHHhc-CCC-----CCC------HhhH-HHHHHHHHhcCChhHHHHHHHHHHhCCC----CCCHHH
Q 008708 71 KQLKKWNVVSEVLEWLRIQ-SWW-----DFN------EMDF-LMLITAYGKQGDFNKAEKVLSFMNKKGY----APSVVS 133 (557)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~-~~~-----~~~------~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~g~----~~~~~~ 133 (557)
.+.+.+++|.+.+..-..+ ... +.+ ...+ +..++++...|++.+++.+++++..+=+ .-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4457788888877533332 111 111 1111 2578889999999999999998876533 357888
Q ss_pred HHHHHHHHHh
Q 008708 134 HTALMEAYGR 143 (557)
Q Consensus 134 ~~~li~~~~~ 143 (557)
|+.++-.+++
T Consensus 170 yd~~vlmlsr 179 (549)
T PF07079_consen 170 YDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHhH
Confidence 8885544433
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.088 Score=41.79 Aligned_cols=96 Identities=15% Similarity=0.157 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 420 (557)
..++..++.++++.|+.+....+++..-. +.++... ..+. .-....+.|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 45566677777777777766666665432 1111100 0000 01123456788888888888
Q ss_pred HHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 008708 421 YGKNKDFDSAVVWYKEMES-CGFPPDQKAKNILLSLA 456 (557)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~ 456 (557)
|+..|++..|+++++...+ .+++.+..+|..|+.-+
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 8888888888888887765 56666777888777644
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.18 Score=41.57 Aligned_cols=92 Identities=11% Similarity=0.059 Sum_probs=54.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 180 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 180 (557)
....-+...|++++|..+|.-+.-.++ -+..-|..|..++-..+++++|+..|......+. -|+..+-....++...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence 344445556666666666666655442 2455566666666666677777776665544432 23333445556666677
Q ss_pred CHHHHHHHHHHhHh
Q 008708 181 KFKEAEEVFMTLLD 194 (557)
Q Consensus 181 ~~~~A~~~~~~~~~ 194 (557)
+.+.|...|..+++
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 77777777766653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.12 Score=49.84 Aligned_cols=63 Identities=16% Similarity=0.087 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 305 THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDI----CSYTTMLSAYVNASDMEGAEKFFRRLKQ 369 (557)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (557)
+...++.+..+|.+.|++++|+..|++.++.. |+. .+|..+..+|...|+.++|+..+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555556666666666666665555442 221 2355555555555666666655555554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.16 Score=40.36 Aligned_cols=97 Identities=9% Similarity=0.117 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 305 THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIK 384 (557)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 384 (557)
|..++..++.++++.|+.+....+++..= |+.++.. ...+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 45788999999999999999988887653 2222210 00000 1123456788888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHH-CCCCcCHHHHHHHHHHH
Q 008708 385 GYAKVNNLEKMMEIYDKMRV-NGIKPNQTIFTTIMDAY 421 (557)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~ 421 (557)
+|+..|++..|+++.+...+ .+++.+..+|..|+.-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99888999999998888774 46777788888888644
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=2.3 Score=43.25 Aligned_cols=151 Identities=11% Similarity=0.089 Sum_probs=77.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 278 INAYGKARREEEALAVFEEMLDA----GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN 353 (557)
Q Consensus 278 i~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (557)
|..+.+.|..-.|-+++.+|.+. +.++-..--.-++.++. ..+..++++-.+.....|...+... +..
T Consensus 930 Ie~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lle 1001 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLE 1001 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhh
Confidence 45567777777777777777432 33322211111222221 1223444444555544444333221 223
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCChhHHHH
Q 008708 354 ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN-GIKPNQTIFTTIMDAYGKNKDFDSAVV 432 (557)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~ 432 (557)
.|-..++-.+.+.... -.....|-.|..-....|.++.|++.--.+.+. .+-|...+|..+.-+-+....+...-+
T Consensus 1002 s~~l~~~~ri~~n~Wr---gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSK 1078 (1189)
T KOG2041|consen 1002 SGLLAEQSRILENTWR---GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSK 1078 (1189)
T ss_pred hhhhhhHHHHHHhhhh---hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHH
Confidence 3334444444443332 124455556666666778888887765554432 456677788777766665555555555
Q ss_pred HHHHHHh
Q 008708 433 WYKEMES 439 (557)
Q Consensus 433 ~~~~m~~ 439 (557)
.|-++..
T Consensus 1079 AfmkLe~ 1085 (1189)
T KOG2041|consen 1079 AFMKLEA 1085 (1189)
T ss_pred HHHHHHh
Confidence 5555443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.15 Score=48.07 Aligned_cols=95 Identities=18% Similarity=0.158 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHH
Q 008708 377 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAK-NILLSL 455 (557)
Q Consensus 377 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~ 455 (557)
.++..|.-+|.+.+.+..|++...+.++.+ ++|....-.=..+|...|+++.|...|+++++ +.|+.... ..++..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 456778889999999999999999999875 66788887888899999999999999999998 67766554 444444
Q ss_pred HhhcCCHHH-HHHHHHhcCC
Q 008708 456 AKTADERNE-ANELLGNFNH 474 (557)
Q Consensus 456 ~~~~g~~~~-a~~~~~~~~~ 474 (557)
-.+..+..+ ..+++..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 444444444 3677777764
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.25 Score=38.51 Aligned_cols=93 Identities=18% Similarity=0.197 Sum_probs=44.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 141 YGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGY 220 (557)
Q Consensus 141 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 220 (557)
++..|+.+.|++.|.+.+..-+ -.+..|+.-..++.-.|+.++|++-+.+.++.....-..--..|..-...|...|+-
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 3445555555555555554422 245555555555555555555555555555421100000011222233445556666
Q ss_pred HHHHHHHHHHHHcC
Q 008708 221 EKARKLFALMAERG 234 (557)
Q Consensus 221 ~~A~~~~~~~~~~~ 234 (557)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666555443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.18 Score=48.82 Aligned_cols=99 Identities=12% Similarity=-0.000 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHH
Q 008708 338 SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV----ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTI 413 (557)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 413 (557)
+.+...++.+..+|...|++++|+..|++.++.. |+. .+|..+..+|...|++++|+..++++++.+ .+ .
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 4467889999999999999999999999998864 553 458999999999999999999999999752 11 2
Q ss_pred HHHHHH--HHHhcCChhHHHHHHHHHHhCCC
Q 008708 414 FTTIMD--AYGKNKDFDSAVVWYKEMESCGF 442 (557)
Q Consensus 414 ~~~l~~--~~~~~g~~~~A~~~~~~m~~~~~ 442 (557)
|..+.. .+....+..+..++++.+.+.|.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 221111 12223344566777777776654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.22 Score=46.99 Aligned_cols=126 Identities=18% Similarity=0.204 Sum_probs=85.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC-----CCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 008708 102 LITAYGKQGDFNKAEKVLSFMNKK-----GYAP---------SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSAL 167 (557)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~~~~~~-----g~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 167 (557)
-.+.|.+.|++..|..-|++.... +.++ -..+++.+.-+|.+.+++..|++.-.+.+..++. |.-
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chh
Confidence 356788889999998888875432 1111 2346777888888888888888888888877543 677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Q 008708 168 TYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEK-ARKLFALMAE 232 (557)
Q Consensus 168 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 232 (557)
.+-.-..++...|+++.|+..|+++++.. |.|..+-+.|+.+-.+.....+ ..++|..|..
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~----P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLE----PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777788888888888888888887532 3344445555555555444433 3666666654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.65 E-value=2.2 Score=41.04 Aligned_cols=128 Identities=16% Similarity=0.267 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHH-HHHHH
Q 008708 342 CSYTTMLSAYVNASDMEGAEKFFRRLKQDG-FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIF-TTIMD 419 (557)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~ 419 (557)
..|...+++-.+..-.+.|..+|-+..+.+ +.++...+++++..++ .|+...|..+|+.-..+ .||...| ...+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456677777778888899999999998887 6688888999988776 57888999999886654 3454444 55666
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 420 AYGKNKDFDSAVVWYKEMESCGFPPD--QKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
-+.+.++-+.|..+|+..+.. +..+ ..+|..++..-..-|+...+..+-+++.
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 777889999999999976542 2333 3578888888888888888777666654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.64 E-value=1.7 Score=39.57 Aligned_cols=121 Identities=17% Similarity=0.124 Sum_probs=59.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 106 YGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEA 185 (557)
Q Consensus 106 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A 185 (557)
....|++.+|..+|....... +-+...--.++.+|...|+++.|..++..+-..-..........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 344556666666666655543 2234455556666666666666666666553321111112222223334444444433
Q ss_pred HHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 186 EEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
..+-.++-. -+.|...-..+...+...|+.+.|.+.+-.+.+
T Consensus 223 ~~l~~~~aa-----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 223 QDLQRRLAA-----DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333321 123555555666666666666666666555543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.63 E-value=1.5 Score=38.97 Aligned_cols=198 Identities=19% Similarity=0.084 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 008708 272 VSYALLINAYGKARREEEALAVFEEMLDA-GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS- 349 (557)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~- 349 (557)
..+......+...+.+..+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44445555555556666555555555431 122333444455555555555666666666555432222 111112222
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCC
Q 008708 350 AYVNASDMEGAEKFFRRLKQDGF--VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP-NQTIFTTIMDAYGKNKD 426 (557)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~ 426 (557)
.+...|+++.|...+.+...... ......+......+...++.+.+...+....... .. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 45566666666666666544210 0122333333333455566666666666665532 22 24555555556666666
Q ss_pred hhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 427 FDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 427 ~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
++.|...+...... .|+ ...+..+...+...+..+++...+.+..
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666552 232 2333333333335555666666555544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.58 E-value=2.4 Score=40.93 Aligned_cols=387 Identities=16% Similarity=0.188 Sum_probs=199.9
Q ss_pred HHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHH--HHHHHhcCChhHHHHHHHHHHhC--CCCC------------
Q 008708 66 TLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLML--ITAYGKQGDFNKAEKVLSFMNKK--GYAP------------ 129 (557)
Q Consensus 66 ~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~--g~~~------------ 129 (557)
.++..--++..+........+.+..+ ...|..| .-.+.+.+.+++|.+.+....+. +..|
T Consensus 51 rilnAffl~nld~Me~~l~~l~~~~~----~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~ 126 (549)
T PF07079_consen 51 RILNAFFLNNLDLMEKQLMELRQQFG----KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFS 126 (549)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhh
Confidence 33444445556655666666666543 2233333 33345789999999988877655 3222
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHH
Q 008708 130 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSS----GPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQK 205 (557)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 205 (557)
|...=+..+.++...|++.++..+++++... ....+..+|+.++-.+.+. +|-++.+.....+-|+
T Consensus 127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pd-- 196 (549)
T PF07079_consen 127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPD-- 196 (549)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChH--
Confidence 2222355677888999999999999888654 3346888888766555432 3333322112222222
Q ss_pred HHHHHHHHHHHcCC-HHH--------HHHHHH----------------------HHHHcCCCCCHHHH-HHHhc-ccCCH
Q 008708 206 MFHMMIYMYKKAGG-YEK--------ARKLFA----------------------LMAERGVQQSTVTY-NSLMS-FETNY 252 (557)
Q Consensus 206 ~~~~l~~~~~~~g~-~~~--------A~~~~~----------------------~~~~~~~~~~~~~~-~~ll~-~~~~~ 252 (557)
|.-++-.|.+.=+ ++. +..++. .....-+.|+.... ..+.. ...+.
T Consensus 197 -yYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~ 275 (549)
T PF07079_consen 197 -YYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDP 275 (549)
T ss_pred -HHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcCh
Confidence 2223333322211 110 111111 11112222221111 11111 12233
Q ss_pred HHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHH----
Q 008708 253 KEVSKIYDQMQRAGLQP----DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNI-------LLDAFA---- 317 (557)
Q Consensus 253 ~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------li~~~~---- 317 (557)
+++..+-+.+....+.+ -..++..+++...+.++...|.+.+.-+.-. .|+...-.. +-+..+
T Consensus 276 e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~ 353 (549)
T PF07079_consen 276 EQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDE 353 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchH
Confidence 34433333333221111 1345666667777777777777777665542 344332211 112222
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHH-
Q 008708 318 ISGMVDQARTVFKCMRRDRCSPDICSYTTML---SAYVNASD-MEGAEKFFRRLKQDGFVPNVITYGTLI----KGYAK- 388 (557)
Q Consensus 318 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~----~~~~~- 388 (557)
..-+...-+.+|+.+....+... ..-..++ .-+-+.|. -++|+++++.+.+-. +-|...-|.+. ..|..
T Consensus 354 ~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qa 431 (549)
T PF07079_consen 354 SYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQA 431 (549)
T ss_pred HHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHH
Confidence 11122333444544444322111 1111122 23344455 788999999887742 33443333222 22222
Q ss_pred --cCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 008708 389 --VNNLEKMMEIYDKMRVNGIKPN----QTIFTTIMDA--YGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTAD 460 (557)
Q Consensus 389 --~g~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 460 (557)
...+.+-..+-+-+.+.|++|- ...-|.+.+| +...|++.++.-.-.-+.+ +.|++.++..++-.+....
T Consensus 432 Ls~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k 509 (549)
T PF07079_consen 432 LSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENK 509 (549)
T ss_pred HhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHh
Confidence 1223333444344446677764 3445556554 4578999998877777766 7899999999999999999
Q ss_pred CHHHHHHHHHhcC
Q 008708 461 ERNEANELLGNFN 473 (557)
Q Consensus 461 ~~~~a~~~~~~~~ 473 (557)
++++|..++.++.
T Consensus 510 ~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 510 RYQEAWEYLQKLP 522 (549)
T ss_pred hHHHHHHHHHhCC
Confidence 9999999998875
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.57 E-value=2.2 Score=40.33 Aligned_cols=281 Identities=16% Similarity=0.103 Sum_probs=168.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 109 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEA--YGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAE 186 (557)
Q Consensus 109 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 186 (557)
.|+-..|.+.-.+..+. +..|....-.++.+ -.-.|+++.|.+-|+.|... ++.-..-+..|.-..-+.|..+.|.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHH
Confidence 46666676666554321 12233334444433 33467888888888887652 2111222233333345667777777
Q ss_pred HHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHH--HHHHhcc------cCCHHHHHH
Q 008708 187 EVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERG-VQQSTVT--YNSLMSF------ETNYKEVSK 257 (557)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~--~~~ll~~------~~~~~~a~~ 257 (557)
++-+..... -+.-...+..++...+..|+++.|+++++.-+... +.++..- -..|+.. ..+...|..
T Consensus 175 ~yAe~Aa~~----Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 175 HYAERAAEK----APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHhh----ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 777776532 23334667777888888888888888887765432 3333321 1122221 234444444
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Q 008708 258 IYDQMQRAGLQPDVV-SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD- 335 (557)
Q Consensus 258 ~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 335 (557)
.-.+..+ +.||.. .-..-..++.+.|+..++-.+++.+-+.. |.+..+. +..+.+.|+. +..-+++..+.
T Consensus 251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~ 322 (531)
T COG3898 251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARSGDT--ALDRLKRAKKLE 322 (531)
T ss_pred HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCCc--HHHHHHHHHHHH
Confidence 4444433 345533 23344578899999999999999998874 4443332 2334556653 33333332211
Q ss_pred CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHC
Q 008708 336 RC-SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK-VNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 336 ~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~ 405 (557)
.. +.+..+...+..+-...|++..|..--+..... .|....|..|.+.-.- .|+-.++...+-+..+.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 11 335677778888888999999888877766654 6888888888877654 49999999999988864
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.1 Score=45.14 Aligned_cols=161 Identities=13% Similarity=0.114 Sum_probs=100.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008708 310 NILLDAFAISGMVDQARTVFKCMRRDRCSPDI------CSYTTMLSAYVN----ASDMEGAEKFFRRLKQDGFVPNVITY 379 (557)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~ 379 (557)
..++....=.|+-+.+++.+.+..+.+--..+ ..|+..+..++. ..+.+.|.+++..+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34555555566666666666665543211111 123333333332 45677888888888875 4665554
Q ss_pred H-HHHHHHHHcCCHHHHHHHHHHHHHC--CC-CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 380 G-TLIKGYAKVNNLEKMMEIYDKMRVN--GI-KPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSL 455 (557)
Q Consensus 380 ~-~l~~~~~~~g~~~~a~~~~~~m~~~--~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 455 (557)
. .-.+.+...|++++|++.|++.... .. ......+--+...+.-.++|++|...|..+.+.. ..+..+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 4 3456667788999999999876631 11 1223455566777888899999999999998743 3445555555543
Q ss_pred -HhhcCCH-------HHHHHHHHhcC
Q 008708 456 -AKTADER-------NEANELLGNFN 473 (557)
Q Consensus 456 -~~~~g~~-------~~a~~~~~~~~ 473 (557)
+...|+. ++|.++++++.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 4567777 88888887764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.94 Score=35.57 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 008708 378 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 442 (557)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 442 (557)
.+...++.....|+-+...+++..+.+.+ .+++...-.+..+|.+.|+..++.++++++-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444455555555555555555554322 44555555555555555555555555555555543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.42 E-value=1.7 Score=38.21 Aligned_cols=207 Identities=14% Similarity=0.179 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008708 205 KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA 284 (557)
Q Consensus 205 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (557)
..|.-...+|....++++|...+.+..+- ...+. ++..+...++.|.-+.+++.+. +--+..|+--...|...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnr----slfhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNR----SLFHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcc----cHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHh
Confidence 34444555666667777776666555421 00111 1122223344444455555442 11123345555667777
Q ss_pred CCHHHHHHHHHHHHHc--CCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 285 RREEEALAVFEEMLDA--GVRPTHK--AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGA 360 (557)
Q Consensus 285 g~~~~A~~~~~~~~~~--~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (557)
|.++.|-..+++.-+. ++.|+.. .|..-+......++...|..+ +..+...+++...+++|
T Consensus 105 GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGKCSRVLVRLEKFTEA 169 (308)
T ss_pred CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHHhhhHhhhhHHhhHH
Confidence 7777666666554321 1233321 222222222222222222222 33334456666666665
Q ss_pred HHHHHHHHh----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCcCHHHHHHHHHHHHhcCChhHHHH
Q 008708 361 EKFFRRLKQ----DGFVPN-VITYGTLIKGYAKVNNLEKMMEIYDKMRVNG---IKPNQTIFTTIMDAYGKNKDFDSAVV 432 (557)
Q Consensus 361 ~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~ 432 (557)
-..+.+-.. ..--++ ...|...|-.+....++..|...++.-...+ -+-+..+...|+.+| ..|+.+++..
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 555443211 111122 2334555555666667777777777644321 122456666777666 4566666544
Q ss_pred HH
Q 008708 433 WY 434 (557)
Q Consensus 433 ~~ 434 (557)
++
T Consensus 249 vl 250 (308)
T KOG1585|consen 249 VL 250 (308)
T ss_pred HH
Confidence 43
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.18 Score=44.92 Aligned_cols=106 Identities=16% Similarity=0.356 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008708 303 RPTHKAYNILLDAFAIS-----GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVI 377 (557)
Q Consensus 303 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 377 (557)
+-|..+|...+..+... +.++-....++.|.+.|+..|..+|+.|++.+-+.. +.|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-
Confidence 34556666666655432 455666666677777777777777777776554321 12211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 008708 378 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDF 427 (557)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 427 (557)
.+....-.|-+ +-+-+++++++|..+|+.||..+-..++.++++.+-.
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 12222222222 2345788999999999999999999999999887764
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.7 Score=43.72 Aligned_cols=176 Identities=13% Similarity=0.109 Sum_probs=113.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHH----cCCHHHHH
Q 008708 257 KIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHK------AYNILLDAFAI----SGMVDQAR 326 (557)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~li~~~~~----~g~~~~A~ 326 (557)
.+|..+... ++| .+..+++..+=.|+-+.+++.+.+..+.+---.+. +|..++..++. ....+.|.
T Consensus 178 G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~ 253 (468)
T PF10300_consen 178 GLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAE 253 (468)
T ss_pred HHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHH
Confidence 344444443 232 34566777777888888888888876532111111 23444433332 45688899
Q ss_pred HHHHHHHhCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 327 TVFKCMRRDRCSPDICSYTTM-LSAYVNASDMEGAEKFFRRLKQDG---FVPNVITYGTLIKGYAKVNNLEKMMEIYDKM 402 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (557)
++++.+.+. -|+...|... .+.+...|++++|++.|++..... .......+--++..+.-.++|++|.+.|..+
T Consensus 254 ~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 254 ELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 999999876 5665555433 346677899999999999765421 1123344556777888899999999999999
Q ss_pred HHCCCCcCHHHHHHHHH-HHHhcCCh-------hHHHHHHHHHHh
Q 008708 403 RVNGIKPNQTIFTTIMD-AYGKNKDF-------DSAVVWYKEMES 439 (557)
Q Consensus 403 ~~~~~~p~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~m~~ 439 (557)
.+.. ..+..+|..+.. ++...|+. ++|..+|.+...
T Consensus 332 ~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 332 LKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred Hhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8753 334455554443 34567777 888888887753
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.06 E-value=1.5 Score=35.65 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=19.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008708 276 LLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI 318 (557)
Q Consensus 276 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 318 (557)
.++..+...+.+.....+++.+...+ ..+....+.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444445555555555544443 2344444444444444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.05 E-value=1.1 Score=44.30 Aligned_cols=103 Identities=13% Similarity=0.101 Sum_probs=59.1
Q ss_pred HHHhcCChhHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 105 AYGKQGDFNKAEKVLS--FMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF 182 (557)
Q Consensus 105 ~~~~~g~~~~A~~~~~--~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 182 (557)
...-.|+++++.+..+ .+.. .+ ...-.+.++..+-+.|..+.|+++-. |+. .-.....+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCH
Confidence 3344567777655554 1111 11 24457777777778888888877632 222 234455677888
Q ss_pred HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 183 KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMA 231 (557)
Q Consensus 183 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 231 (557)
+.|.++.+.. .+...|..|......+|+++-|.+.|.+..
T Consensus 335 ~~A~~~a~~~---------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 335 DIALEIAKEL---------DDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHCCCC---------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHhc---------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 8887764332 466788888888888888888888876644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=4.6 Score=40.81 Aligned_cols=56 Identities=16% Similarity=0.048 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRR 334 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 334 (557)
+..+...+...+.+...+..|-++|.+|-.. ..+++.....++|++|..+-+...+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 3344444555555666666777777666331 2355666677777777777665543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.88 Score=40.84 Aligned_cols=87 Identities=21% Similarity=0.189 Sum_probs=47.9
Q ss_pred hcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHH
Q 008708 108 KQGDFNKAEKVLSFMNKKGY--APSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PSALTYQIILKLFVEANKFK 183 (557)
Q Consensus 108 ~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~g~~~ 183 (557)
+.|++..|...|....+... .-...++--|..++...|+++.|..+|..+.+.-+. --+.++..|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 44556666666666655421 011334445666666666666666666666554322 12345555556666666666
Q ss_pred HHHHHHHHhHh
Q 008708 184 EAEEVFMTLLD 194 (557)
Q Consensus 184 ~A~~~~~~~~~ 194 (557)
+|...|+++++
T Consensus 233 ~A~atl~qv~k 243 (262)
T COG1729 233 EACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHH
Confidence 66666666654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.25 Score=44.08 Aligned_cols=117 Identities=17% Similarity=0.271 Sum_probs=81.4
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008708 268 QPDVVSYALLINAYGKA-----RREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDIC 342 (557)
Q Consensus 268 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 342 (557)
+.|..+|...+..+... +..+-....++.|.+.|+.-|..+|+.|++.+-+..- .|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-H
Confidence 45778888888887543 5677788888999999999999999999987644322 111 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN-LEKMMEIYDKMR 403 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~m~ 403 (557)
.+....-.|-+ +-+-+++++++|...|+-||..+-..|++++.+.+- ..+..++.--|.
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 12222222222 334588999999999999999999999999988775 333344433343
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.90 E-value=2.7 Score=41.17 Aligned_cols=103 Identities=13% Similarity=0.116 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 008708 376 VITYGTLIKGYAKVNNLEKMMEIYDKMRVNG-IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILL 453 (557)
Q Consensus 376 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~ 453 (557)
..+=..|..++.+.|+.++|.+.+++|.+.. ...+..+...|+.++...+.+.++..++.+.-+...+.+. ..|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 3333457777788899999999998887542 1123456778888888999999998888887543322222 3455544
Q ss_pred HHHhhcCC---------------HHHHHHHHHhcCCCCCC
Q 008708 454 SLAKTADE---------------RNEANELLGNFNHPNNE 478 (557)
Q Consensus 454 ~~~~~~g~---------------~~~a~~~~~~~~~~~~~ 478 (557)
-.++..++ -..|.+.+.++.+.++.
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 33333333 12355667776655553
|
The molecular function of this protein is uncertain. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.89 Score=36.60 Aligned_cols=68 Identities=21% Similarity=0.171 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 008708 59 PKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWW-DFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKG 126 (557)
Q Consensus 59 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 126 (557)
|...++......-..|++..|.+.|+.+..+-++ +.....-..|+.+|.+.|++++|...+++.++..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4445555555556667777777777777766543 2334455567777777777777777777777664
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.11 Score=32.37 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=21.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTAL 137 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 137 (557)
.+..+...|.+.|++++|+++|+++.+.. |.|...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 34555566666666666666666665553 2344444443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.66 E-value=2.3 Score=39.77 Aligned_cols=131 Identities=15% Similarity=-0.023 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHH
Q 008708 274 YALLINAYGKARREEEALAVFEEMLDAGVR-----PTHKAYNILLDAFAISGMVDQARTVFKCMRRD----RCSPDICSY 344 (557)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~ 344 (557)
..++..++...+.++++++.|+...+.-.. ....++-.|...|....|+++|.-+..+..+. ++..-..-|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 345666777777788888888876543211 12236777778888888888887666554321 211111112
Q ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 345 -----TTMLSAYVNASDMEGAEKFFRRLKQ----DGFV-PNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 404 (557)
Q Consensus 345 -----~~li~~~~~~g~~~~A~~~~~~m~~----~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (557)
..+.-++...|....|.+.-++..+ .|-. ........+.+.|...|+.+.|+.-|+....
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2333456667777777777666543 3311 1233455677777778888887777776653
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.65 E-value=2.1 Score=42.45 Aligned_cols=155 Identities=16% Similarity=0.127 Sum_probs=76.8
Q ss_pred HHHHcCCHHHHHHHHH--HhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCH
Q 008708 175 LFVEANKFKEAEEVFM--TLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNY 252 (557)
Q Consensus 175 ~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 252 (557)
...-.++++.+.++.. .++ ..+ .....+.++..+-+.|..+.|+.+...-..+ | .|.-.+|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll----~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r--------F-eLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL----PNI--PKDQGQSIARFLEKKGYPELALQFVTDPDHR--------F-ELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG----GG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH--------H-HHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhc----ccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHHH--------h-HHHHhcCCH
Confidence 3445677777666654 222 111 1445777888888888888888775332211 1 111123444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 253 KEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCM 332 (557)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 332 (557)
+.|.++.++ ..+...|..|.....+.|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+..
T Consensus 335 ~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 444433222 12555666677777777777777666665432 344555566666666666655555
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008708 333 RRDRCSPDICSYTTMLSAYVNASDMEGAEKFFR 365 (557)
Q Consensus 333 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 365 (557)
...| -+|....++...|+.++..+++.
T Consensus 400 ~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 400 EERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 5443 13444455555566666555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.61 E-value=1.3 Score=40.90 Aligned_cols=157 Identities=11% Similarity=0.073 Sum_probs=107.8
Q ss_pred HHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHc
Q 008708 244 SLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH----KAYNILLDAFAIS 319 (557)
Q Consensus 244 ~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~ 319 (557)
.++-+.|+..+|-..++++.+. .+.|..++...=.+|.-.|+...-...++++... ..++. ..-.....++..+
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred HHhhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHh
Confidence 3455678888888888888876 4557788888888888999998888888887653 12333 2333444455688
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 320 GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD---GFVPNVITYGTLIKGYAKVNNLEKMM 396 (557)
Q Consensus 320 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~ 396 (557)
|-+++|.+.-++..+-+ +.|...-.+....+.-.|+..++.++..+-... +--.-...|-...-.+...+.++.|+
T Consensus 189 g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred ccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 99999998888877654 456777778888888889999998887754332 10011112333344455568899999
Q ss_pred HHHHHHH
Q 008708 397 EIYDKMR 403 (557)
Q Consensus 397 ~~~~~m~ 403 (557)
++|+.-+
T Consensus 268 eIyD~ei 274 (491)
T KOG2610|consen 268 EIYDREI 274 (491)
T ss_pred HHHHHHH
Confidence 9997644
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.78 Score=41.17 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=24.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-CCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 382 LIKGYAKVNNLEKMMEIYDKMRVN-GIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 382 l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
|+.++...|+++.|..+|..+.+. +-.|. +..+--+..+..+.|+.++|...|++..+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 444444444444444444444432 11111 23344444444444444444444444443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.56 E-value=1.8 Score=34.07 Aligned_cols=139 Identities=12% Similarity=0.128 Sum_probs=69.2
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHH
Q 008708 177 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVS 256 (557)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~ 256 (557)
.-.|..++..++..+... +.+..-+|-+|--....-+-+-..++++.+-+. .| ++.+++...+.
T Consensus 13 ildG~V~qGveii~k~v~------Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FD-------is~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVN------SSNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FD-------ISKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHH------HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S--------GGG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcC------cCCccccceeeeecchhhchhHHHHHHHHHhhh---cC-------chhhcchHHHH
Confidence 345677777777777664 223333444433333333334444444333221 11 12345555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008708 257 KIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR 336 (557)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 336 (557)
..+-.+- .+...+..-+......|+-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 4443321 234445566667777777777777777776532 5677777777777777777777777777776665
Q ss_pred C
Q 008708 337 C 337 (557)
Q Consensus 337 ~ 337 (557)
+
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 3
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=4.7 Score=39.43 Aligned_cols=145 Identities=6% Similarity=0.045 Sum_probs=96.7
Q ss_pred CHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 321 MVDQARTVFKCMRRD-RCSPD-ICSYTTMLSAYVN---------ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 389 (557)
Q Consensus 321 ~~~~A~~~~~~~~~~-~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 389 (557)
..+.|..+|.+.... ...|+ ...|..+..++.. .....+|.++-++..+.+ +-|+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 356777777777622 22343 2333333332221 234567788888888877 77888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHhhcCCHHHH
Q 008708 390 NNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQK---AKNILLSLAKTADERNEA 465 (557)
Q Consensus 390 g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~a 465 (557)
++++.|...|++.... .|| ..+|......+.-+|+.++|.+.+++..+ +.|... .....+..|..+ ..++|
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCC-chhhh
Confidence 8899999999998875 455 56677777777788999999999999776 455442 333334455554 56777
Q ss_pred HHHHHh
Q 008708 466 NELLGN 471 (557)
Q Consensus 466 ~~~~~~ 471 (557)
..++-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 776644
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.67 Score=36.24 Aligned_cols=90 Identities=11% Similarity=0.019 Sum_probs=63.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcC
Q 008708 104 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSAL---TYQIILKLFVEAN 180 (557)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~g 180 (557)
-+++..|+.+.|++.|.+.+..- |....+||.-..++.-.|+.++|++-+++..+........ +|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 35567788888888888877653 4467788888888888888888888888876643222222 3333445677778
Q ss_pred CHHHHHHHHHHhHh
Q 008708 181 KFKEAEEVFMTLLD 194 (557)
Q Consensus 181 ~~~~A~~~~~~~~~ 194 (557)
+.+.|..-|+..-+
T Consensus 130 ~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 130 NDDAARADFEAAAQ 143 (175)
T ss_pred chHHHHHhHHHHHH
Confidence 88888888877654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=3.3 Score=40.51 Aligned_cols=117 Identities=14% Similarity=0.063 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHhcCCCCCC-HhhHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008708 76 WNVVSEVLEWLRIQSWWDFN-EMDFLMLITAYGK---------QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG 145 (557)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 145 (557)
...|+.+|..........|+ ...|..+..++.. .....+|.++-++..+.+ +.|..+...+..++.-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 44566667766633222222 2333333333221 123344555555555554 335556656666556666
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 008708 146 RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLD 194 (557)
Q Consensus 146 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 194 (557)
+++.|..+|++....++. ...+|....-.+.-.|+.++|.+.+++.++
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 666666666666654332 333444444444456666666666666553
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.37 E-value=3.6 Score=36.74 Aligned_cols=173 Identities=15% Similarity=0.134 Sum_probs=97.2
Q ss_pred CCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 008708 57 PLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWW-DFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHT 135 (557)
Q Consensus 57 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 135 (557)
..|.+.++......-..|+++.|.+.|+.+..+.++ +....+-..++.++.+.++++.|+..+++....-.......|-
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 346667777777777778999999999999887654 3345566678888889999999999999887763222223344
Q ss_pred HHHHHHHhc-------CCh---HHHHHHHHHHHhCC----CCCCHHHHH------------HHHHHHHHcCCHHHHHHHH
Q 008708 136 ALMEAYGRG-------GRY---KNAEAIFRRMQSSG----PRPSALTYQ------------IILKLFVEANKFKEAEEVF 189 (557)
Q Consensus 136 ~li~~~~~~-------g~~---~~A~~~~~~m~~~~----~~~~~~~~~------------~ll~~~~~~g~~~~A~~~~ 189 (557)
.-|.+++.- .+. ..|..-|++++..= ..||...-. .+.+-|.+.|.+..|..-+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 444443321 222 33444444444431 122322211 1223455666666666666
Q ss_pred HHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 190 MTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALM 230 (557)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 230 (557)
+.+++.- ...+.....+-.+..+|...|-.++|.+.-.-+
T Consensus 191 ~~v~e~y-~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 191 EEVLENY-PDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHhcc-ccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 6665421 111111233444555666666666655544333
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.37 E-value=1.8 Score=40.45 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=8.7
Q ss_pred HHHHHHHHHhcCChhHHH
Q 008708 99 FLMLITAYGKQGDFNKAE 116 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~ 116 (557)
|..+..+.++.|.+++++
T Consensus 46 lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 46 LGCLVTAHSEMGRYKEML 63 (518)
T ss_pred hccchhhhhhhHHHHHHH
Confidence 334455555555554443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.32 E-value=2.3 Score=34.30 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=39.7
Q ss_pred HHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc
Q 008708 173 LKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF 248 (557)
Q Consensus 173 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 248 (557)
.....+.|++++|.+.|+.+...-..+ +-...+--.|+.+|.+.+++++|...++..++..+....+-|...+.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g-~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFG-EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 334456666666666666665421111 112234445666666777777777776666665544333444443333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.14 Score=31.90 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 133 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQI 171 (557)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 171 (557)
+|..+...|.+.|++++|.++|++.++..+. |...+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHH
Confidence 4555666666666666666666666665433 4444433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.24 E-value=2.7 Score=34.86 Aligned_cols=132 Identities=13% Similarity=0.134 Sum_probs=68.9
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHH--HH
Q 008708 63 VLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVV-SHTAL--ME 139 (557)
Q Consensus 63 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~l--i~ 139 (557)
.+...+.+...+..++|+.-|..+.+.+--....-.-........+.|+...|...|+++-.....|.+. -...| .-
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~ 140 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY 140 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence 3444444555566667777777776654211111112233444556677777777777765543223222 11111 12
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 008708 140 AYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLD 194 (557)
Q Consensus 140 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 194 (557)
.+..+|.++......+-+-..+.+.-...-..|.-+..+.|++..|.+.|..+..
T Consensus 141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3445666666666666555444333344445555556666777777777766653
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.14 E-value=3.3 Score=38.26 Aligned_cols=162 Identities=9% Similarity=0.018 Sum_probs=100.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc---ccCCHHHHHHHHHHHHHC-C--CCCCHHHHHHHHHHHHhcCCH
Q 008708 214 YKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS---FETNYKEVSKIYDQMQRA-G--LQPDVVSYALLINAYGKARRE 287 (557)
Q Consensus 214 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~~~a~~~~~~~~~~-~--~~~~~~~~~~li~~~~~~g~~ 287 (557)
....|++.+|-..++++++. .+.|...++..-. ..|+...-...++.+... + ++.....-..+.-++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34567888888888888764 2334444443332 246766666677766543 2 221222223444556788999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 288 EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPD---ICSYTTMLSAYVNASDMEGAEKFF 364 (557)
Q Consensus 288 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~ 364 (557)
++|.+.-++..+.+ +.|...-.++...+...|++.++.++..+-...=-... ...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999998887765 55777778888888899999999888765443200001 122223333455668999999999
Q ss_pred HH-HHhCCCCCCHH
Q 008708 365 RR-LKQDGFVPNVI 377 (557)
Q Consensus 365 ~~-m~~~~~~p~~~ 377 (557)
++ |...--+.|..
T Consensus 271 D~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 271 DREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHhhccchh
Confidence 86 33332244543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.86 E-value=2.3 Score=34.64 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 100 LMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA 179 (557)
Q Consensus 100 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 179 (557)
..++..+.+.+.......+++.+...+ ..+...++.++..|++.+ ..+.++.+.. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 455566666666666666666666555 245556666666666543 2333333331 01222233355555555
Q ss_pred CCHHHHHHHHHHh
Q 008708 180 NKFKEAEEVFMTL 192 (557)
Q Consensus 180 g~~~~A~~~~~~~ 192 (557)
+-++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.78 E-value=5.7 Score=36.90 Aligned_cols=132 Identities=20% Similarity=0.182 Sum_probs=69.3
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCH-----HHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHhcccC
Q 008708 177 VEANKFKEAEEVFMTLLDEEKSPLKPDQ-----KMFHMMIYMYKKAG-GYEKARKLFALMAERGVQQSTVTYNSLMSFET 250 (557)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 250 (557)
.+.|+++.|..++.++..... ...|+. .++...+....+.+ +++.|...+++..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~------------------ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYD------------------ 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH------------------
Confidence 456777777777776643211 222332 12223333444555 88888877765543
Q ss_pred CHHHHHHHHHHHH-HCCCCCC-----HHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 008708 251 NYKEVSKIYDQMQ-RAGLQPD-----VVSYALLINAYGKARREE---EALAVFEEMLDAGVRPTHKAYNILLDAFAISGM 321 (557)
Q Consensus 251 ~~~~a~~~~~~~~-~~~~~~~-----~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 321 (557)
+++... .....|+ ..++..++.+|...+..+ +|..+++.+.... +-.+.++..-+..+.+.++
T Consensus 65 -------~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~ 136 (278)
T PF08631_consen 65 -------ILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFD 136 (278)
T ss_pred -------HHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCC
Confidence 222200 0111222 235566777777777654 4555555554332 2223444444555666777
Q ss_pred HHHHHHHHHHHHhC
Q 008708 322 VDQARTVFKCMRRD 335 (557)
Q Consensus 322 ~~~A~~~~~~~~~~ 335 (557)
.+.+.+++.+|...
T Consensus 137 ~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 137 EEEYEEILMRMIRS 150 (278)
T ss_pred hhHHHHHHHHHHHh
Confidence 77888888877765
|
It is also involved in sporulation []. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.59 E-value=1.5 Score=37.38 Aligned_cols=97 Identities=23% Similarity=0.221 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 97 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS--VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 174 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 174 (557)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+.....+....-..+.......-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4577899999999999999999999988754433 45677888888999999999888877754322222222222111
Q ss_pred -----HHHHcCCHHHHHHHHHHhH
Q 008708 175 -----LFVEANKFKEAEEVFMTLL 193 (557)
Q Consensus 175 -----~~~~~g~~~~A~~~~~~~~ 193 (557)
.+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 2345688888888887764
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.25 E-value=5.6 Score=35.17 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=25.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLKQD---GFVPNVITYGTLIKGYAKVNNLEKMMEI 398 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 398 (557)
|-..|-.+....++..|...++.--+. .-+-+..+...|+.+|- .|+.+++.++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 333444444555666666666553221 11234455555665553 3555554443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=93.02 E-value=5 Score=36.62 Aligned_cols=60 Identities=10% Similarity=0.169 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 129 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS-GPRPSALTYQIILKLFVEANKFKEAEEV 188 (557)
Q Consensus 129 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 188 (557)
++..+...++..++..+++.+-+++++..... ++..|...|..+++...+.|+..-..++
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 34444444444444555555444444444332 3333444444455554555544444333
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.81 E-value=12 Score=37.77 Aligned_cols=124 Identities=10% Similarity=0.011 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 306 HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKG 385 (557)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 385 (557)
..+|..-+.--...|+.+.+.-+|++..-.- ..=...|--.+.-....|+.+-|..++....+-.++..+.+--.-...
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3456666666667777777777777665311 111123333333334447777776666665544323222222111222
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCChhHHHH
Q 008708 386 YAKVNNLEKMMEIYDKMRVNGIKPNQ-TIFTTIMDAYGKNKDFDSAVV 432 (557)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 432 (557)
+-..|++..|..+++...+. . |+. ..-..-+....+.|..+.+..
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhH
Confidence 33456777777777777654 2 442 222233334456666666663
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.61 E-value=1.4 Score=40.19 Aligned_cols=73 Identities=21% Similarity=0.172 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQS-----SGPRPSALTYQII 172 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~~l 172 (557)
+..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 3345555666666666666666665553 33555666666666666666666666665543 3455554444333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.52 E-value=8.3 Score=35.27 Aligned_cols=143 Identities=15% Similarity=0.158 Sum_probs=74.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 008708 279 NAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDME 358 (557)
Q Consensus 279 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 358 (557)
......|++.+|..+|+...... +-+...-..++.+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34566777777777777776653 22344556677777777888888777777654321222222222233333333333
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHhcC
Q 008708 359 GAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN--GIKPNQTIFTTIMDAYGKNK 425 (557)
Q Consensus 359 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g 425 (557)
+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+. |. -|...-..++..+.-.|
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcC
Confidence 333333333221 335555556666666677777766655555432 21 12333444444444444
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.51 E-value=13 Score=37.50 Aligned_cols=416 Identities=13% Similarity=0.081 Sum_probs=204.8
Q ss_pred chhcchhHHHHHHHHHhhChHHHHHHH---hhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHH
Q 008708 24 DEAGKKNWRRLMNQIEEVGSAVAVLRS---ERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFL 100 (557)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 100 (557)
...+...|+.++....+.+.+ .+++. .....-|.--...-.....-..++..+.+.++|+.-... ++.....|.
T Consensus 41 ~~~~f~~wt~li~~~~~~~~~-~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~ 117 (577)
T KOG1258|consen 41 DSLDFDAWTTLIQENDSIEDV-DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWL 117 (577)
T ss_pred chhcccchHHHHhccCchhHH-HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHH
Confidence 344566777777766555544 33332 112222222222222222234556667777777776644 334555555
Q ss_pred HHHHHHH-hcCChhHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-
Q 008708 101 MLITAYG-KQGDFNKAEKVLSFMNKK-GY-APSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLF- 176 (557)
Q Consensus 101 ~l~~~~~-~~g~~~~A~~~~~~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~- 176 (557)
.....+. ..|+.+.....|+..... |. --+...|...|..-..++++.....++++.++. + ...|+....-|
T Consensus 118 ~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei-P---~~~~~~~f~~f~ 193 (577)
T KOG1258|consen 118 SYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI-P---LHQLNRHFDRFK 193 (577)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh-h---hhHhHHHHHHHH
Confidence 5444444 456777777777776653 21 124556777777777778888888888887663 1 12222222221
Q ss_pred --HHc------CCHHHHHHHHHHhHhcc-CCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHh
Q 008708 177 --VEA------NKFKEAEEVFMTLLDEE-KSPLKPDQKMFHMMIYMY-KKAGGYEKARKLFALMAERGVQQSTVTYNSLM 246 (557)
Q Consensus 177 --~~~------g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 246 (557)
.+. ...+++.++-....... .....+.......-+.-- ...+..+++.....+.... -..+|+
T Consensus 194 ~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~----~~~~~~--- 266 (577)
T KOG1258|consen 194 QLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI----HEKVYQ--- 266 (577)
T ss_pred HHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH----HHHHHH---
Confidence 111 12233322222221100 000000111111111000 0001111111111111100 000000
Q ss_pred cccCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 008708 247 SFETNYKEVSKIYDQMQRA-------GLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAIS 319 (557)
Q Consensus 247 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 319 (557)
......+....|+.-.+. -.+++..+|..-+..-.+.|+.+.+.-+|+...-. +..-...|-..+.-....
T Consensus 267 -~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~ 344 (577)
T KOG1258|consen 267 -KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESS 344 (577)
T ss_pred -hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHc
Confidence 000111111222222221 11234567888888888999999999999887532 112233444445555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHH--
Q 008708 320 GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV-ITYGTLIKGYAKVNNLEKMM-- 396 (557)
Q Consensus 320 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~-- 396 (557)
|+.+-|..++....+-..+..+.+--.-....-..|++..|..+++...+.- |+. ..-..-+....+.|+.+.+.
T Consensus 345 ~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~ 422 (577)
T KOG1258|consen 345 GDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYK 422 (577)
T ss_pred CchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHH
Confidence 8888888877766554333333322222223445689999999999988763 443 33334455566788888877
Q ss_pred -HHHHHHHHCCCCcCHHHHHHH----HH-HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 008708 397 -EIYDKMRVNGIKPNQTIFTTI----MD-AYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTAD 460 (557)
Q Consensus 397 -~~~~~m~~~~~~p~~~~~~~l----~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 460 (557)
+++...... .-+..+...+ .+ .+.-.++.+.|..++.++.+. ++++...|..++..+...+
T Consensus 423 ~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 423 NELYSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 333333322 1222222222 22 233467889999999999884 3556667777777666554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.32 E-value=2.1 Score=39.14 Aligned_cols=77 Identities=14% Similarity=0.231 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCcCHHHHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV-----NGIKPNQTIFTTI 417 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~l 417 (557)
++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34455555566666666666666666554 45556666666666666666666666665553 3555555555444
Q ss_pred HHH
Q 008708 418 MDA 420 (557)
Q Consensus 418 ~~~ 420 (557)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.26 E-value=2.4 Score=36.12 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHHHHHH
Q 008708 377 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN--QTIFTTIMDAYGKNKDFDSAVVWYKEMESC---GFPPDQKAKNI 451 (557)
Q Consensus 377 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~ 451 (557)
..+..++..|++.|+.+.|.+.|.++.+....+. ...+-.+++...-.|++..+...+.++... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4567788888888888888888888887644443 345667777778888888888887776542 21112111111
Q ss_pred HH--HHHhhcCCHHHHHHHHHhcC
Q 008708 452 LL--SLAKTADERNEANELLGNFN 473 (557)
Q Consensus 452 l~--~~~~~~g~~~~a~~~~~~~~ 473 (557)
.. -.+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 11 13456788888888776543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.23 E-value=10 Score=35.51 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 147 YKNAEAIFRRMQSSGPRPSALTYQIIL 173 (557)
Q Consensus 147 ~~~A~~~~~~m~~~~~~~~~~~~~~ll 173 (557)
+++.+.+++.|.+.|...+..+|.+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~ 104 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAAL 104 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHH
Confidence 445566777777777776666655433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.23 E-value=9.7 Score=35.37 Aligned_cols=188 Identities=16% Similarity=0.161 Sum_probs=106.4
Q ss_pred HhcC-CHHHHHHHHHHHHHc--------CCCCCH-----HHHHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCCHHHH
Q 008708 282 GKAR-REEEALAVFEEMLDA--------GVRPTH-----KAYNILLDAFAISGMV---DQARTVFKCMRRDRCSPDICSY 344 (557)
Q Consensus 282 ~~~g-~~~~A~~~~~~~~~~--------~~~~~~-----~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~ 344 (557)
...+ +++.|..++++..+. ...|+. .++..++.+|...+.. ++|..+++.+.... +..+..+
T Consensus 46 ~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~ 124 (278)
T PF08631_consen 46 LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVF 124 (278)
T ss_pred HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHH
Confidence 3444 888887777765432 122333 3667788888877764 45666666665442 2235556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHCCCCcCHH-HHHH-HHH
Q 008708 345 TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGY---AKVNNLEKMMEIYDKMRVNGIKPNQT-IFTT-IMD 419 (557)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~-l~~ 419 (557)
..-+..+.+.++.+.+.+.+.+|...- .-....+...+..+ ... ....|...+..+....+.|... .... ++.
T Consensus 125 ~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~ 202 (278)
T PF08631_consen 125 LLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLT 202 (278)
T ss_pred HHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 666777777999999999999999862 22334444444444 333 3456777777766544555553 2111 111
Q ss_pred ---HHHhcCC------hhHHHHHHHHHHh-CCCCCCHHH---HHHHH----HHHhhcCCHHHHHHHHHhc
Q 008708 420 ---AYGKNKD------FDSAVVWYKEMES-CGFPPDQKA---KNILL----SLAKTADERNEANELLGNF 472 (557)
Q Consensus 420 ---~~~~~g~------~~~A~~~~~~m~~-~~~~p~~~~---~~~l~----~~~~~~g~~~~a~~~~~~~ 472 (557)
...+.++ .+....++....+ .+.+.+..+ ..+++ ..+.+.+++++|.+.++-.
T Consensus 203 ~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 203 RVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 1223222 3333344443322 222334333 33333 3567899999999998753
|
It is also involved in sporulation []. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=92.19 E-value=1.9 Score=37.00 Aligned_cols=81 Identities=14% Similarity=0.205 Sum_probs=61.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHH
Q 008708 142 GRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYE 221 (557)
Q Consensus 142 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 221 (557)
.+.|+ +.|++.|-.+...+.--++.....|.. |-...+.+++++++..+++....+-.+|+..+..|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34454 678888888887765555555555554 4457889999999999988655555788999999999999999998
Q ss_pred HHH
Q 008708 222 KAR 224 (557)
Q Consensus 222 ~A~ 224 (557)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.16 E-value=13 Score=36.72 Aligned_cols=60 Identities=8% Similarity=0.145 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 310 NILLDAFAISGMVDQARTVFKCMRRDRCS-PDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 369 (557)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (557)
..+..++-+.|+.++|++.|++|.+.... .+......|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44555556667777777777776654211 2334555666777777777777777666543
|
The molecular function of this protein is uncertain. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.15 E-value=12 Score=36.31 Aligned_cols=144 Identities=12% Similarity=0.236 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMRRDR-CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITY-GTLIKG 385 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~ 385 (557)
+|...++...+..-++.|..+|-+..+.+ ..+++..+++++..++ .|+..-|..+|+--... -||...| +-.+..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 45566666667777899999999999888 5678888888888665 57888999999875554 3444443 455667
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 008708 386 YAKVNNLEKMMEIYDKMRVNGIKPN--QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK 457 (557)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 457 (557)
+...++-+.|..+|+...+. +..+ ..+|..+|.--..-|+...+..+-+.|.+ +-|...+...+.+-|.
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 77889999999999976643 2333 57899999988899999999999999987 5677777766666554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.41 Score=28.15 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=11.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 008708 379 YGTLIKGYAKVNNLEKMMEIYDK 401 (557)
Q Consensus 379 ~~~l~~~~~~~g~~~~a~~~~~~ 401 (557)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555555554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.96 E-value=5.8 Score=41.50 Aligned_cols=175 Identities=14% Similarity=0.208 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc
Q 008708 171 IILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQ--KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF 248 (557)
Q Consensus 171 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 248 (557)
.-+..+.+...+.-|..+-+.- +..++. .+....++.+.+.|++++|...|-+.... +.|.. .....+.
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-Vi~kfLd- 409 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQ------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-VIKKFLD- 409 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-HHHHhcC-
Confidence 3444555555556565554433 111221 22333444555666666666666544322 11111 1000100
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 249 ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTV 328 (557)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 328 (557)
..+..+...+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.++|..+
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 12234444556666666654 44555677777777777777666655433 2211 00123344445555555555544
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008708 329 FKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRR 366 (557)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (557)
-.+... +......+ +-..+++++|++++..
T Consensus 486 A~k~~~-----he~vl~il---le~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 486 ATKFKK-----HEWVLDIL---LEDLHNYEEALRYISS 515 (933)
T ss_pred HHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhc
Confidence 433321 22222222 2344556666665554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.44 Score=28.01 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 206 MFHMMIYMYKKAGGYEKARKLFALMA 231 (557)
Q Consensus 206 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 231 (557)
+++.|...|.+.|++++|+.+|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888754
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.94 E-value=6.5 Score=32.76 Aligned_cols=123 Identities=16% Similarity=0.163 Sum_probs=59.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHH--HHHHHHcCCH
Q 008708 282 GKARREEEALAVFEEMLDAGVRPTHK-AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDIC-SYTTM--LSAYVNASDM 357 (557)
Q Consensus 282 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l--i~~~~~~g~~ 357 (557)
.+.++.++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|-.. -..-| ...+..+|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45566666777776666655432222 11222333455666666666666665543333222 11111 1123445555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 358 EGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 404 (557)
Q Consensus 358 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (557)
+......+-+...+-+.-...-..|.-+-.+.|++..|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555555444333222223334455555556666666666655543
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=91.61 E-value=3.7 Score=39.85 Aligned_cols=133 Identities=11% Similarity=0.046 Sum_probs=93.6
Q ss_pred HHHcCCHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhH
Q 008708 351 YVNASDMEGAEKFFRR-LKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 429 (557)
Q Consensus 351 ~~~~g~~~~A~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 429 (557)
-...|+...|-+-+.. +....-.|+.... ....+...|.++.+...+...... +.....+..++++...+.|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 3445666666544443 3333224444433 344567789999999888776543 34567788889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCCCcccceee
Q 008708 430 AVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGINGLSIS 487 (557)
Q Consensus 430 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 487 (557)
|..+-..|+...+ .++.............|-++++...++++...+++....+.+.+
T Consensus 376 a~s~a~~~l~~ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~ 432 (831)
T PRK15180 376 ALSTAEMMLSNEI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFL 432 (831)
T ss_pred HHHHHHHHhcccc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeee
Confidence 9999998887543 35566666666677788999999999998888887777776665
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.52 E-value=12 Score=34.98 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 359 GAEKFFRRLKQDGFVPNVITYGTL 382 (557)
Q Consensus 359 ~A~~~~~~m~~~~~~p~~~~~~~l 382 (557)
++.++++.+.+.|+++....|..+
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHH
Confidence 444455555555544444444433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.61 Score=26.79 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 413 IFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 413 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344444455555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=90.80 E-value=13 Score=34.05 Aligned_cols=125 Identities=15% Similarity=0.138 Sum_probs=71.8
Q ss_pred HHHHhcccCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 008708 242 YNSLMSFETNYKEVSKIYDQMQR-AGLQPDVVSYALLINAYGK-AR-REEEALAVFEEMLD-AGVRPTHKAYNILLDAFA 317 (557)
Q Consensus 242 ~~~ll~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~ 317 (557)
|..++....-.-+|+.+|+.... ..+-.|..+...+++.... .+ ....-.++.+-+.. .+..++..+...++..++
T Consensus 134 Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~ 213 (292)
T PF13929_consen 134 YWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILA 213 (292)
T ss_pred HHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHH
Confidence 44444444444455555552211 1233355556666655544 22 22222333333332 234567777777888888
Q ss_pred HcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008708 318 ISGMVDQARTVFKCMRRD-RCSPDICSYTTMLSAYVNASDMEGAEKFFRR 366 (557)
Q Consensus 318 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (557)
+.+++.+-.++++..... +...|...|..+|......|+..-..++..+
T Consensus 214 ~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 214 ESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred hcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 888888888888776654 4556777788888888888887665555553
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.77 Score=26.24 Aligned_cols=26 Identities=12% Similarity=0.331 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 414 FTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 414 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
|..+..++...|++++|++.+++.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444455555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.88 E-value=14 Score=33.09 Aligned_cols=174 Identities=18% Similarity=0.089 Sum_probs=87.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----
Q 008708 280 AYGKARREEEALAVFEEMLDAGV--RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN---- 353 (557)
Q Consensus 280 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---- 353 (557)
.-.+.|++++|.+.|+.+..... +-...+...++.++.+.++++.|+..+++....-......-|-.-|.+++.
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccC
Confidence 34567777777777777765421 112334555666677777777777777776654222222223333333321
Q ss_pred ---cCCHHH---HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 008708 354 ---ASDMEG---AEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDF 427 (557)
Q Consensus 354 ---~g~~~~---A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 427 (557)
..+... |..-|+.++.. -||.. -...|..-...+... =...=..+.+-|.+.|.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcCh
Confidence 122222 23333333332 12211 111111111111100 001112345567788888
Q ss_pred hHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 428 DSAVVWYKEMESCGFPPDQ---KAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 428 ~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
-.|..-+++|++. .+-+. ..+..+..+|...|-.++|...-+-+.
T Consensus 184 ~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 184 VAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 8888888888774 23222 345556677888888888777766554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.66 E-value=0.48 Score=27.45 Aligned_cols=20 Identities=15% Similarity=0.451 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhcCChhHH
Q 008708 411 QTIFTTIMDAYGKNKDFDSA 430 (557)
Q Consensus 411 ~~~~~~l~~~~~~~g~~~~A 430 (557)
...|..+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 44444444444444444443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.62 E-value=28 Score=36.10 Aligned_cols=180 Identities=19% Similarity=0.199 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHcC
Q 008708 253 KEVSKIYDQMQRAGLQPDVVSYALLINA-----YGKARREEEALAVFEEMLD-------AGVRPTHKAYNILLDAFAISG 320 (557)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g 320 (557)
..+...++...+.| +...-..+..+ +....+.+.|+.+|+.+.+ .| .+.....+..+|.+..
T Consensus 229 ~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 229 SEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 45555566555554 22222222222 3455677788887777755 33 2234455556665532
Q ss_pred -----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HcCCH
Q 008708 321 -----MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN-ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA--KVNNL 392 (557)
Q Consensus 321 -----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~--~~g~~ 392 (557)
+.+.|..++.+.-..| .|+...+-..+.-... ..+...|.++|......| .+....+.+++.... -..+.
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcCCCH
Confidence 5667888887777665 2333322222211111 245678888888887776 223222222222111 12367
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 008708 393 EKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 442 (557)
Q Consensus 393 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 442 (557)
..|..++.+..+.| .|-..--...+..+.. ++++.+.-.+..+.+.|.
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 78888888888776 3332222233334444 677777766666666553
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.33 E-value=0.48 Score=27.43 Aligned_cols=20 Identities=30% Similarity=0.233 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhhcCCHHHH
Q 008708 446 QKAKNILLSLAKTADERNEA 465 (557)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~a 465 (557)
...|..+..++...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 34445555555555555544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.21 E-value=15 Score=32.30 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 166 ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 166 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
...+......+...+.+..+...+...... .........+......+...+.+..+...+.....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL--ELLPNLAEALLNLGLLLEALGKYEEALELLEKALA 123 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344444555555555555555555555320 01123333444444455555555555555554443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.92 E-value=7.2 Score=39.21 Aligned_cols=131 Identities=15% Similarity=0.050 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008708 205 KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA 284 (557)
Q Consensus 205 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (557)
...+.+++.+-++|-.++|+++- +|...-=.+.-..|+++.|.++..+. -+..-|..|..+..+.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s---------~D~d~rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS---------TDPDQRFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSA 679 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC---------CChhhhhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhc
Confidence 34566777777778777777643 22222112222234444444433332 1344566666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 285 RREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFF 364 (557)
Q Consensus 285 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 364 (557)
+++..|.+.|..... |..|+-.+...|+-+....+-....+.|. .|....+|...|+++++.+++
T Consensus 680 ~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 680 GELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred ccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHH
Confidence 666666666655432 23344445555554444333333333331 122233445556666665555
Q ss_pred H
Q 008708 365 R 365 (557)
Q Consensus 365 ~ 365 (557)
.
T Consensus 745 i 745 (794)
T KOG0276|consen 745 I 745 (794)
T ss_pred H
Confidence 4
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.79 E-value=2.3 Score=35.67 Aligned_cols=60 Identities=17% Similarity=0.286 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 008708 394 KMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKD-----------FDSAVVWYKEMESCGFPPDQKAKNILLSLAK 457 (557)
Q Consensus 394 ~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 457 (557)
+|+.-|++.+. +.|+ ..++.++..+|...+. +++|...|+++.. ..|+...|+.-+..+.
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH
Confidence 33444444443 4555 4666667666654332 5556666666666 5788888888777764
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.78 E-value=4.8 Score=34.36 Aligned_cols=96 Identities=18% Similarity=0.236 Sum_probs=72.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHH
Q 008708 347 MLSAYVNASDMEGAEKFFRRLKQDGFVPN-----VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDA 420 (557)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~ 420 (557)
=..-+.+.|++++|..-|.+.+..- ++. ...|..-..++.+.+.++.|+.-..+.++.+ |+ ......-..+
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAea 177 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEA 177 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHH
Confidence 3556788999999999999998863 332 2346666778889999999999999988754 43 3334444568
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHH
Q 008708 421 YGKNKDFDSAVVWYKEMESCGFPPDQK 447 (557)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~~~~p~~~ 447 (557)
|.+..++++|+.-|+++++ ..|...
T Consensus 178 yek~ek~eealeDyKki~E--~dPs~~ 202 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILE--SDPSRR 202 (271)
T ss_pred HHhhhhHHHHHHHHHHHHH--hCcchH
Confidence 8899999999999999988 455544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.67 E-value=36 Score=36.06 Aligned_cols=144 Identities=13% Similarity=0.135 Sum_probs=82.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 180 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 180 (557)
...+.+.+.|++++|...|-+-... +.|+ .+|.-|....+..+-..+++.+.+.|.. +...-..|+.+|.+.+
T Consensus 373 kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlk 445 (933)
T KOG2114|consen 373 KYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLK 445 (933)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhc
Confidence 3445555678888887777554432 1222 2444555666667777777777777665 4445567777888888
Q ss_pred CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHH
Q 008708 181 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYD 260 (557)
Q Consensus 181 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~ 260 (557)
+.++-.++.+..- .|.. ..-....+..+.+.+-.++|..+-.+... .......++...+++++|.+.+.
T Consensus 446 d~~kL~efI~~~~----~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ille~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 446 DVEKLTEFISKCD----KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILLEDLHNYEEALRYIS 514 (933)
T ss_pred chHHHHHHHhcCC----Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHHHHhcCHHHHHHHHh
Confidence 8777666655441 1110 11133455566666666666655443332 34455556666667777766655
Q ss_pred HH
Q 008708 261 QM 262 (557)
Q Consensus 261 ~~ 262 (557)
.+
T Consensus 515 sl 516 (933)
T KOG2114|consen 515 SL 516 (933)
T ss_pred cC
Confidence 43
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.64 E-value=8.3 Score=35.47 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 356 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 403 (557)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (557)
++++++.++..=++-|+-||..+++.+++.+.+.+++..|..+.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344445444444445555555555555555555555555554444443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=88.48 E-value=45 Score=36.94 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=38.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQDGFVPNVIT--YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNK 425 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 425 (557)
+.+|..+|++.+|+.+..++... -+... -..|+.-+...+++-+|-++..+.... ....+..|++..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHh
Confidence 44555555555555555544321 11111 134555555666666666655554421 122333455555
Q ss_pred ChhHHHHHHHHH
Q 008708 426 DFDSAVVWYKEM 437 (557)
Q Consensus 426 ~~~~A~~~~~~m 437 (557)
.|++|.++....
T Consensus 1041 ~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1041 EWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHhc
Confidence 666666655443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.41 E-value=1.4 Score=25.18 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 378 TYGTLIKGYAKVNNLEKMMEIYDKMRV 404 (557)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (557)
+|..++.+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555666666666666666666554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.40 E-value=6.3 Score=33.70 Aligned_cols=91 Identities=14% Similarity=0.136 Sum_probs=71.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 314 DAFAISGMVDQARTVFKCMRRDRCSPD----ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 389 (557)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 389 (557)
+-+.+.|++++|..-|...+..-.+.. .+.|..-..++.+.+.++.|++--...++.+ +........-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 457889999999999999987642222 2345556668889999999999998888875 44445555567789999
Q ss_pred CCHHHHHHHHHHHHHC
Q 008708 390 NNLEKMMEIYDKMRVN 405 (557)
Q Consensus 390 g~~~~a~~~~~~m~~~ 405 (557)
..++.|+.-|.++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 9999999999999986
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.18 E-value=14 Score=30.90 Aligned_cols=132 Identities=9% Similarity=0.137 Sum_probs=75.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 008708 327 TVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 406 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (557)
+.++.+.+.+++|+...+..++..+.+.|++.....+ ...++-+|.......+-.+. +.+..+.++--.|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 3445555667778888888888888888876554443 34445556555544443322 2333344443344321
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 407 IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 407 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
=...+..+++.+...|++-+|+++.+..... +......++.+....++...-..+++-+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0114566777788888888888888775321 1122244666666666665555555443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.64 E-value=4 Score=37.88 Aligned_cols=54 Identities=11% Similarity=0.066 Sum_probs=25.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 314 DAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLK 368 (557)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (557)
+-|.+.|.+++|+..|....... +.+++++..-..+|.+...+..|+.=-...+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 34455555555555555444321 2245555555555555555554444444433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.63 E-value=28 Score=33.56 Aligned_cols=65 Identities=9% Similarity=0.078 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRP---THKAYNILLDAFAISGMVDQARTVFKCMRR 334 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 334 (557)
...+|..++..+.+.|.++.|...+..+...+... .+.+...-+...-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45578888888999999999999888887643111 333444445566677888888888887776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=87.33 E-value=52 Score=36.44 Aligned_cols=143 Identities=22% Similarity=0.250 Sum_probs=63.2
Q ss_pred hHHHHHHHhhhcCC-CCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCC------HhhHHHHHHHHHhc-CChhH
Q 008708 43 SAVAVLRSERTRGQ-PLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFN------EMDFLMLITAYGKQ-GDFNK 114 (557)
Q Consensus 43 ~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~-g~~~~ 114 (557)
+|.-+++..+.... ..|...++..+..+....++..| |.+++++. ..+| +..|..-+.++.+. ++.+-
T Consensus 659 ka~VvLQ~~RGNLEtI~pR~lVLa~vr~~l~~~~y~~A---F~~~RkhR-idlnii~d~~~~~Fl~nv~afl~~in~~~~ 734 (1265)
T KOG1920|consen 659 KAAVVLQMPRGNLETIYPRILVLAKVRTLLDRLRYKEA---FEVMRKHR-IDLNIIFDYDPKRFLKNVPAFLKQINRVNH 734 (1265)
T ss_pred hhhHhHhhcCCCceeechhhhHHHHHHHHHHHHHHHHH---HHHHHHhc-cCccchhhcCHHHHHhhHHHHhccCCcHHH
Confidence 35556663322222 34566677777766666666554 45555543 2232 33444444444433 34444
Q ss_pred HHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcC----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHH
Q 008708 115 AEKVLSFMNKKGYAPSVVSHTA----LMEAYGRGG----RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN--KFKE 184 (557)
Q Consensus 115 A~~~~~~~~~~g~~~~~~~~~~----li~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~ 184 (557)
-..++-.+...++ +...|.. -...|.... +.....+........ ..|+ .-...++.+|.+.+ .++.
T Consensus 735 l~lfl~~lk~eDv--tk~~y~~~~~s~k~~~~~r~~~d~kv~~vc~~vr~~l~~-~~~~-~~~~~ilTs~vk~~~~~ie~ 810 (1265)
T KOG1920|consen 735 LELFLTELKEEDV--TKTMYSSTSGSGKQVYMSRDPYDNKVNSVCDAVRNALER-RAPD-KFNLFILTSYVKSNPPEIEE 810 (1265)
T ss_pred HHHHHhhcccchh--hhhhccccccccceeEEeccchhhHHHHHHHHHHHHHhh-cCcc-hhhHHHHHHHHhcCcHHHHH
Confidence 4444444432211 1111111 101121111 223333333333332 2344 33445667777776 6666
Q ss_pred HHHHHHHhH
Q 008708 185 AEEVFMTLL 193 (557)
Q Consensus 185 A~~~~~~~~ 193 (557)
|++......
T Consensus 811 aL~kI~~l~ 819 (1265)
T KOG1920|consen 811 ALQKIKELQ 819 (1265)
T ss_pred HHHHHHHHH
Confidence 666666554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.27 E-value=5.6 Score=29.44 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=18.3
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008708 400 DKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 400 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
+.+...++.|++.+..+.+++|.+.+++..|.++++-..
T Consensus 31 N~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 31 NNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333444444444555555555555555555444443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.26 E-value=29 Score=33.41 Aligned_cols=66 Identities=11% Similarity=-0.002 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 304 PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP---DICSYTTMLSAYVNASDMEGAEKFFRRLKQ 369 (557)
Q Consensus 304 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (557)
....+|..++..+.+.|.++.|...+..+...+... .+.....-+..+-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345578888999999999999999999888643221 344455556677788999999999988776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.08 E-value=4.9 Score=34.83 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=30.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 008708 136 ALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTL 192 (557)
Q Consensus 136 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 192 (557)
..++.+.+.++..+++.+.++-++.++. |..+-..+++.++-.|++++|..-++-+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3444555555666666655555554332 4445555556666666666665544444
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.17 E-value=1.6 Score=26.37 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=7.1
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 008708 172 ILKLFVEANKFKEAEEVFMT 191 (557)
Q Consensus 172 ll~~~~~~g~~~~A~~~~~~ 191 (557)
+...|...|++++|+.++++
T Consensus 8 la~~~~~~g~~~~A~~~~~~ 27 (42)
T PF13374_consen 8 LANAYRAQGRYEEALELLEE 27 (42)
T ss_dssp HHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHhhhhcchhhHHHHH
Confidence 33333333333333333333
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.01 E-value=23 Score=30.94 Aligned_cols=83 Identities=14% Similarity=0.106 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc--cCCHHHHHH
Q 008708 180 NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF--ETNYKEVSK 257 (557)
Q Consensus 180 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~a~~ 257 (557)
|-+.-|.--|.+.+.. .|.-+.+||.|.-.+...|+++.|.+.|+...+....-+-...|.-+.. .|++.-|.+
T Consensus 79 GL~~LAR~DftQaLai----~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 79 GLRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hHHHHHhhhhhhhhhc----CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 3334444444444421 1333567888888888899999999999988887555454555554443 377777776
Q ss_pred HHHHHHHCC
Q 008708 258 IYDQMQRAG 266 (557)
Q Consensus 258 ~~~~~~~~~ 266 (557)
=+-+.-+..
T Consensus 155 d~~~fYQ~D 163 (297)
T COG4785 155 DLLAFYQDD 163 (297)
T ss_pred HHHHHHhcC
Confidence 666655543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.98 E-value=2.3 Score=25.60 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 204 QKMFHMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 204 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
..+++.|...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35789999999999999999999988765
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.93 E-value=8.2 Score=28.59 Aligned_cols=62 Identities=13% Similarity=0.211 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 357 MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
.-++.+-++.+....+.|++....+-+.+|.+..++..|.++|+-.+.+ +..+...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 3345555566666667777777777777777777777777777766632 1223445554443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.91 E-value=22 Score=32.88 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=68.2
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 008708 94 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKG---YAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQ 170 (557)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 170 (557)
....+...++..-....+++.+...+-++...- ..|+.. -...++.+. .-++++++.++..=+..|+-||..+++
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHH
Confidence 444555667777777788888888887776531 111111 112222222 335778888888888888889999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHh
Q 008708 171 IILKLFVEANKFKEAEEVFMTLLD 194 (557)
Q Consensus 171 ~ll~~~~~~g~~~~A~~~~~~~~~ 194 (557)
.+++.+.+.+++..|.++...++.
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999888888877765
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.70 E-value=25 Score=31.12 Aligned_cols=62 Identities=13% Similarity=0.212 Sum_probs=30.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHH---HHH-HHH--hcCChhHHHHHHHHHHhCCCCCCH
Q 008708 383 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTT---IMD-AYG--KNKDFDSAVVWYKEMESCGFPPDQ 446 (557)
Q Consensus 383 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~---l~~-~~~--~~g~~~~A~~~~~~m~~~~~~p~~ 446 (557)
...-...+++.+|+++|++.....+..+..-|.. ++. ++| -..+.-.+...+++..+ ..|+.
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~--~dP~F 228 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE--LDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh--cCCcc
Confidence 3334456677777777777765544333333321 111 112 22444445555555554 45555
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.57 E-value=49 Score=34.37 Aligned_cols=77 Identities=21% Similarity=0.226 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH----HhcCCh
Q 008708 356 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV----NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY----GKNKDF 427 (557)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~----~~~g~~ 427 (557)
+...+...+.+....| +......|.+.|..- .+++.|...|......+ ...+| .+...+ .... +
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~-nlg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALF-NLGYMHEHGEGIKV-L 525 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHh-hhhhHHhcCcCcch-h
Confidence 4556666666655544 444455555555443 24666777776666543 22222 222222 2233 6
Q ss_pred hHHHHHHHHHHhC
Q 008708 428 DSAVVWYKEMESC 440 (557)
Q Consensus 428 ~~A~~~~~~m~~~ 440 (557)
..|.+++++..+.
T Consensus 526 ~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 526 HLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777653
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.48 E-value=1.9 Score=24.50 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNK 124 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 124 (557)
+..+..+|.+.|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.74 E-value=9.8 Score=28.54 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 394 KMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 394 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+..+-++.+...++.|.+.+..+.+.+|.|.+++..|.++++-...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455555566677777777777777777777777777776654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.22 E-value=18 Score=31.22 Aligned_cols=77 Identities=8% Similarity=0.016 Sum_probs=60.5
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 109 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS---GPRPSALTYQIILKLFVEANKFKEA 185 (557)
Q Consensus 109 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~~~A 185 (557)
+-.-+.|.+.|-.+...+.--++.....|...|. ..+.++++.++....+. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 119 r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3344778888888888776667777777777776 66789999999887664 3367899999999999999999877
Q ss_pred H
Q 008708 186 E 186 (557)
Q Consensus 186 ~ 186 (557)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=83.89 E-value=23 Score=29.31 Aligned_cols=67 Identities=18% Similarity=0.067 Sum_probs=34.6
Q ss_pred hccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 72 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYG 142 (557)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 142 (557)
..++.+.+..+++.+.-..+- .+..-..-...+.++|++.+|..+|+.+.... |....-..|+..|.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~--~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL 88 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE--FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCL 88 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHH
Confidence 334556666666666655432 12222233444556777777777777766552 33333334443333
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=83.88 E-value=16 Score=27.45 Aligned_cols=60 Identities=13% Similarity=0.245 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 359 GAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 359 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
+..+-++.+....+.|++.+..+.+.+|.+..++..|.++|+-.+.+ +.+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 45555666666677788888888888888888888888888777643 1222225655544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.91 E-value=9.9 Score=35.40 Aligned_cols=93 Identities=16% Similarity=0.050 Sum_probs=59.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 278 INAYGKARREEEALAVFEEMLDAGVRP-THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD 356 (557)
Q Consensus 278 i~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (557)
.+-|.+.|++++|+..|...+.. .| +++++..-..+|.+...+..|..=........ ..-.-.|..-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 45699999999999999988764 45 88899888999999999887776655554321 0011223333333333455
Q ss_pred HHHHHHHHHHHHhCCCCCC
Q 008708 357 MEGAEKFFRRLKQDGFVPN 375 (557)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~ 375 (557)
..+|.+=++..+.. .|+
T Consensus 181 ~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHHHhHHHHHhh--Ccc
Confidence 55555555555543 455
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=82.89 E-value=2.2 Score=24.34 Aligned_cols=26 Identities=12% Similarity=0.391 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 414 FTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 414 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
|..+...|...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444555555555555554443
|
... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.81 E-value=41 Score=31.27 Aligned_cols=138 Identities=14% Similarity=0.055 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 304 PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS-DMEGAEKFFRRLKQDGFVPNVITYGTL 382 (557)
Q Consensus 304 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l 382 (557)
++..+-...+.++.+.++ ..++..+-.+.+. ++...-...+.++.+.+ +...+...+..+.. .++..+-...
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A 212 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEA 212 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHH
Confidence 355555566666666665 3455555555542 34444444455555442 23355555555553 3466666667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 008708 383 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK 457 (557)
Q Consensus 383 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 457 (557)
+.++.+.|+ ..+...+-+..+.+ + .....+.+++..|.. +|...+..+.+. .||..+......+|.
T Consensus 213 ~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 213 IIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 777777776 45555555555432 2 234566777777774 677777777652 456666655555554
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.78 E-value=47 Score=34.75 Aligned_cols=103 Identities=16% Similarity=0.236 Sum_probs=49.5
Q ss_pred CCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCC-CCC----C-HhhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CC
Q 008708 57 PLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSW-WDF----N-EMDFLMLITAYGKQGDFNKAEKVLSFMNKKG--YA 128 (557)
Q Consensus 57 ~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~ 128 (557)
....+.+...+..++...+++...++.+-+.+... ++. + .+.|...++---+-|+-++|+.+.-.+.+.. +.
T Consensus 198 VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 198 VLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred ccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Confidence 34455566666666666677776776666665431 000 0 1122233333334466666666655555442 33
Q ss_pred CCHHHHH-----H--HHHHHHhcCChHHHHHHHHHHHh
Q 008708 129 PSVVSHT-----A--LMEAYGRGGRYKNAEAIFRRMQS 159 (557)
Q Consensus 129 ~~~~~~~-----~--li~~~~~~g~~~~A~~~~~~m~~ 159 (557)
||..+.. - +-+.|-..+..+.|.++|++.-+
T Consensus 278 pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe 315 (1226)
T KOG4279|consen 278 PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE 315 (1226)
T ss_pred CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc
Confidence 4432211 1 11223334455666666666544
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=82.41 E-value=70 Score=33.72 Aligned_cols=69 Identities=13% Similarity=0.156 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHhCCCCCCHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR-------YKNAEAIFRRMQSSGPRPSAL 167 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~~~~~ 167 (557)
..-.+|-.|.|+|.+++|.++....... .......+-..+..|....+ -+....-|++..+.....|++
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 3447888899999999999998554432 23344566677777766422 235555666665544433554
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.54 E-value=23 Score=35.83 Aligned_cols=99 Identities=18% Similarity=0.202 Sum_probs=49.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 317 AISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMM 396 (557)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 396 (557)
.+.|+++.|.++..+.. +..-|..|..+....+++..|.+.|.+... |..|+-.+...|+-+...
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 34555555555544332 444566666666666666666666554432 223444455555554444
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008708 397 EIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKE 436 (557)
Q Consensus 397 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 436 (557)
.+-....+.| +. |...-+|...|+++++.+++..
T Consensus 713 ~la~~~~~~g-~~-----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQG-KN-----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhc-cc-----chHHHHHHHcCCHHHHHHHHHh
Confidence 4444444433 11 2222344556666666555543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.09 E-value=40 Score=29.48 Aligned_cols=63 Identities=11% Similarity=0.120 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHh
Q 008708 131 VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLD 194 (557)
Q Consensus 131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 194 (557)
+.++|.+.--+...|+++.|.+.|+...+..+.-+-...+.-| ++.-.|++.-|.+-+.+..+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHh
Confidence 4556666666666666666666666665554432222222222 22234566666555555543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.09 E-value=1 Score=36.90 Aligned_cols=86 Identities=16% Similarity=0.270 Sum_probs=63.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 008708 382 LIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADE 461 (557)
Q Consensus 382 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 461 (557)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.+....+++... ..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence 456667778888888888888876655678888899999999888788887776221 1233457778888899
Q ss_pred HHHHHHHHHhcCC
Q 008708 462 RNEANELLGNFNH 474 (557)
Q Consensus 462 ~~~a~~~~~~~~~ 474 (557)
+++|.-++.++..
T Consensus 86 ~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 86 YEEAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHccc
Confidence 9999988887653
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.05 E-value=15 Score=32.00 Aligned_cols=74 Identities=12% Similarity=0.036 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 008708 310 NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG--FVPNVITYGTLIK 384 (557)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~ 384 (557)
+..++.+.+.+.+.+++...++-.+.+ +.+..+-..++..++-.|++++|..-++-.-... ..+-..+|..++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 344555666666777776666555442 3355555666667777777777766655443321 1233344554444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.0 bits (198), Expect = 4e-16
Identities = 35/354 (9%), Positives = 95/354 (26%), Gaps = 43/354 (12%)
Query: 115 AEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 174
A + + +P L++ +A + + K
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 175 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERG 234
+ ++ A + + + + M++ ++ + + G +++ + ++ +
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-- 193
Query: 235 VQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALA-V 293
AGL PD++SYA + G+ ++ +
Sbjct: 194 ------------------------------AGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 294 FEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN 353
E+M G++ +LL + ++ V P + + +L
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
Query: 354 ASDMEGAEKFFRRLKQDGFVPNV-----ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIK 408
K LK + + + K K ++ K
Sbjct: 284 KDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRD 343
Query: 409 PNQTIFTTIMD---AYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTA 459
+ + + + ++ Y + C + + +L L
Sbjct: 344 QWEKALCRALRETKNRLEREVYEGRFSLYPFL--CLLDEREVVRMLLQVLQALP 395
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 79.9 bits (195), Expect = 1e-15
Identities = 38/310 (12%), Positives = 89/310 (28%), Gaps = 9/310 (2%)
Query: 144 GGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD 203
G + + + + + P P +I+ K + + + + + K
Sbjct: 2 GHHHHHHRKVQMGAKDATPVPCGRWAKILEKDKRTQQMRMQRLKAKLQMP-FQSGEFKAL 60
Query: 204 QKMFHMMIYMY-KKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQM 262
+ + + K+ G + A + Q + + + + ++ Q
Sbjct: 61 TRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPS--GQH 118
Query: 263 QRAGLQPDVVSYALLINAYGKARREEEA---LAVFEEMLDAGVRPTHKAYNILLDAFAIS 319
+A L + A L V T YN ++ +A
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 320 GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS-DMEGAEKFFRRLKQDGFVPNVIT 378
G + V ++ +PD+ SY L D E+ ++ Q+G +
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238
Query: 379 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIM-DAYGKNKDFDSAVVWYKEM 437
L+ + L+ + ++ + P + ++ D Y K+ +
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
Query: 438 ESCGFPPDQK 447
Q
Sbjct: 299 TLQCLFEKQL 308
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.0 bits (146), Expect = 7e-10
Identities = 18/154 (11%), Positives = 42/154 (27%), Gaps = 4/154 (2%)
Query: 325 ARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIK 384
A + C R+ SP +L ++ + + Q K
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 385 GYAKVNNLEK---MMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG 441
+ L ++ ++ R ++ +M + + F V ++ G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 442 FPPDQKAKNILLS-LAKTADERNEANELLGNFNH 474
PD + L + + + L +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.4 bits (134), Expect = 2e-08
Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 4/140 (2%)
Query: 101 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRY-KNAEAIFRRMQS 159
++ + +QG F + VL + G P ++S+ A ++ GR + E +M
Sbjct: 170 AVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229
Query: 160 SGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG 219
G + AL ++L A K +V P P ++ G
Sbjct: 230 EGLKLQALFTAVLLSEEDRATVLKAVHKVK---PTFSLPPQLPPPVNTSKLLRDVYAKDG 286
Query: 220 YEKARKLFALMAERGVQQST 239
KL +
Sbjct: 287 RVSYPKLHLPLKTLQCLFEK 306
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 1e-10
Identities = 71/462 (15%), Positives = 140/462 (30%), Gaps = 120/462 (25%)
Query: 167 LTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKL 226
Y+ IL +F +A F + + + D KS L +++ H+ +L
Sbjct: 16 YQYKDILSVFEDA--FVDNFD-CKDVQDMPKSILS-KEEIDHI----IMSKDAVSGTLRL 67
Query: 227 FALM---AERGVQQSTVT-----YNSLMS-FETNYKEVSKIYDQM--QRAGLQPDVVSYA 275
F + E VQ+ Y LMS +T ++ S + QR L D +A
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 276 LLINAYGKARREE-----EALA--------VFEEMLDAGVRPTHK---AYNILLD----- 314
Y +R + +AL + + +L +G K A ++ L
Sbjct: 128 ----KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-----KTWVALDVCLSYKVQC 178
Query: 315 --AFAI----SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS-DMEGAEKFFRRL 367
F I + TV + M + ++T+ N + + RRL
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 368 KQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTT----IMDAYG 422
+ N + L+ L + + N + + + TT + D
Sbjct: 238 LKSKPYENCL----LV--------LL---NVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 423 KNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA--KTADERNEANE-------LLG--- 470
++ + S PD+ K++LL + D E ++
Sbjct: 283 AATTTHISL----DHHSMTLTPDE-VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 471 --------NFNHPNNEPGINGLSISVDEEDDDDDDDEDDDDNIYHDGD-----------G 511
N+ H N + + S++ + + D +++
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 512 DGDGDDNEDDAEETIACSGKEDELIFFNGDHQRSQEGLHTLQ 553
D D + S L+ + S + ++
Sbjct: 398 DVIKSDVMVVVNKLHKYS-----LV--EKQPKESTISIPSIY 432
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 6e-10
Identities = 76/548 (13%), Positives = 146/548 (26%), Gaps = 187/548 (34%)
Query: 11 QKRRKVEVFKDAADEAGKKNWRRLMNQIEEVGSAVAVLR----SERTR----GQPLPKDL 62
++ V+ F +E + N++ LM+ I+ +++ +R R Q K
Sbjct: 74 KQEEMVQKF---VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 63 VLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFM 122
V RL+ K + + L LR + G G K +
Sbjct: 131 V----SRLQPYLK---LRQALLELRPAKN-----------VLIDGVLG-SGKT--WV--- 166
Query: 123 NKKGYAPSVVSHTALMEAYGRG------GRYKNAEAIFRRMQSSGPRPSALTYQIILKLF 176
A V + + E + +Q L YQI
Sbjct: 167 -----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-------LLYQIDPNWT 214
Query: 177 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQ 236
++ + + ++ L+ + Y+ L L VQ
Sbjct: 215 SRSDHSSNIKL----RIHSIQAELR-----RLLKSKPYENC--------LLVL---LNVQ 254
Query: 237 QSTVTYNSLMSFE--------TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREE 288
+ +F T +K+V+ D +S A +
Sbjct: 255 NAKA----WNAFNLSCKILLTTRFKQVT-------------DFLS-----AATTTHISLD 292
Query: 289 EALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC--SPDICSYTT 346
+ ++LL + + R+ +P S
Sbjct: 293 HHSMTLTP---------DEVKSLLLKYLDCR---------PQDLPREVLTTNPRRLS--- 331
Query: 347 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 406
+++ +DG + VN +K+ I + +N
Sbjct: 332 IIAE----------------SIRDG--LATWDN------WKHVNC-DKLTTII-ESSLNV 365
Query: 407 IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEM-ESCG-FPPDQKAKNILLSL----AKTAD 460
++P + Y++M + FPP ILLSL +D
Sbjct: 366 LEPAE----------------------YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 461 ERNEANEL----LGNFNHPNNEPGINGLSISVDEEDDDDDDDED---DDDNIYHDGDGDG 513
N+L L + I + + + + +++ D NI D D
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 514 DGDDNEDD 521
D
Sbjct: 464 LIPPYLDQ 471
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 51/385 (13%), Positives = 118/385 (30%), Gaps = 61/385 (15%)
Query: 64 LGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMN 123
L + L ++W++V ++ + F +++ + + + +AE LS +N
Sbjct: 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN 299
Query: 124 KKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFK 183
+ + + R+ + AI ++ P + Y + L E+ +
Sbjct: 300 GLEKSSDL--LLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKN 356
Query: 184 EAEEVFMTLLDEEKSPLKPDQKMFHMMI-YMYKKAGGYEKARKLFALMAERGVQQSTVTY 242
+ + L+D P++ + + + Y +AR+ F
Sbjct: 357 KLYLISNDLVD-----RHPEKAVTWLAVGIYYLCVNKISEARRYF--------------- 396
Query: 243 NSLMSFETNYKEVSKIYDQMQRA-GLQPD-VVSYALLINAYGKARREEEALAVFEEMLDA 300
++ + P ++ +++ ++A++ +
Sbjct: 397 --------------------SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR- 435
Query: 301 GVRP-THKAYNILLDAFAISGMVDQARTVF-KCMRRDRCSPDICSYTTMLSAYVNASDME 358
+ TH Y L G + A + P + + N SDM+
Sbjct: 436 -LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL--LNELGVVAFNKSDMQ 492
Query: 359 GAEKFFRR-----LKQDGFVPN-VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ- 411
A F+ K T+ L Y K+ + ++ ++ + N
Sbjct: 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ--GLLLSTNDA 550
Query: 412 TIFTTIMDAYGKNKDFDSAVVWYKE 436
+ T I Y K A+ E
Sbjct: 551 NVHTAIALVYLHKKIPGLAITHLHE 575
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 33/301 (10%), Positives = 84/301 (27%), Gaps = 43/301 (14%)
Query: 145 GRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQ 204
+YK A + ++ P+ + + + A+ + +S
Sbjct: 98 QQYKCAAFVGEKVLDITGNPNDA-FWLAQVYC-CTGDYARAKCLLTKEDLYNRSS----- 150
Query: 205 KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQR 264
++ + K ++ A L F + K +K+ Q
Sbjct: 151 ACRYLAAFCLVKLYDWQGALNL---------------LGETNPFRKDEKNANKLLMQDG- 194
Query: 265 AGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH-KAYNILLDAFAISGMVD 323
G++ + L Y + A ++E L V +A++ L+ ++ +
Sbjct: 195 -GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM--VDAKCYEAFDQLVSNHLLTADEE 251
Query: 324 QARTVFKCMRRDRCSPDI----CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITY 379
V K D Y L+ + ++ AE + + +
Sbjct: 252 WDL-VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE--KSSDLL 308
Query: 380 GTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG----KNKDFDSAVVWYK 435
+ ++ I K+ I P + + ++ + + +
Sbjct: 309 LCKADTLFVRSRFIDVLAITTKILE--IDPY---NLDVYPLHLASLHESGEKNKLYLISN 363
Query: 436 E 436
+
Sbjct: 364 D 364
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 1e-05
Identities = 28/217 (12%), Positives = 68/217 (31%), Gaps = 12/217 (5%)
Query: 72 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSV 131
+ + + E I + N + + + + K + + +
Sbjct: 76 AKLFSDEAANIYERA-ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT 134
Query: 132 VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMT 191
+ + M+ R K+ IF++ + + L + + A ++F
Sbjct: 135 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFEL 194
Query: 192 LLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGV---QQSTVTYNSLMSF 248
L + + I R LF + G ++S + ++F
Sbjct: 195 GLKK----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250
Query: 249 ETNYKEVSKIYDQMQRA----GLQPDVVSYALLINAY 281
E+N +++ I +R + + ALL++ Y
Sbjct: 251 ESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRY 287
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 29/218 (13%), Positives = 80/218 (36%), Gaps = 21/218 (9%)
Query: 104 TAYGKQGDFNKA----EKVLS-FMNKKGYAPSVV-SHTALMEAYGRGGRYKNAEAIFRR- 156
+Y + + + + Y ++ H+ + +Y++A + F++
Sbjct: 151 ESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKA 210
Query: 157 ---MQSSGPRPS-ALTYQIILKLFVEANKFKEAEEVFMTLLD-EEKSPLKPDQ-KMFHMM 210
++ T I +++++A F + E+S + P + + ++
Sbjct: 211 YSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270
Query: 211 IYMYKKAGGYEKARKLF----ALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQ 263
++ K G +KA + A + G + L S + + + +D ++
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE 330
Query: 264 RAGLQPDVVSYALLI-NAYGKARREEEALAVFEEMLDA 300
L D+ +A+ + Y + + ++A A F ++
Sbjct: 331 SKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 29/217 (13%), Positives = 67/217 (30%), Gaps = 20/217 (9%)
Query: 104 TAYGKQGDFNKA----EKVLS-FMNKKGYAPSVV-SHTALMEAYGRGGRYKNAEAIFRR- 156
AY + + + L + N Y+ + S + Y Y A
Sbjct: 149 EAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAA 208
Query: 157 ---MQSSGPRPS-ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD-QKMFHMMI 211
A++ I + + + A E F + + K+ +
Sbjct: 209 LELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268
Query: 212 YMYKKAGGYEKARKLF----ALMAERGVQQSTVTYNSLMS---FETNYKEVSKIYDQMQR 264
+ KAG +KA + + R + + L + + +++ + ++
Sbjct: 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328
Query: 265 AGLQPDVVSYALLI-NAYGKARREEEALAVFEEMLDA 300
L + + A + + E+A A + ++L A
Sbjct: 329 KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 36/265 (13%), Positives = 70/265 (26%), Gaps = 17/265 (6%)
Query: 109 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALT 168
G + + + V L AY +Y + P
Sbjct: 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQA 67
Query: 169 YQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFA 228
++ + ++ + + IY Y + A +
Sbjct: 68 VRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD--QNPDAALRTLH 125
Query: 229 LMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYAL---LINAYGKAR 285
TV + K +MQ D L ++
Sbjct: 126 QGDSLECMAMTVQILLKLD---RLDLARKELKKMQD--QDEDATLTQLATAWVSLAAGGE 180
Query: 286 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVF-KCMRRDRCSPDICSY 344
+ ++A +F+EM D PT N G + A V + + +D P+
Sbjct: 181 KLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239
Query: 345 TTMLSAYVNASDMEGAEKFFRRLKQ 369
+LS ++ E ++ +LK
Sbjct: 240 LVVLSQHLGKPP-EVTNRYLSQLKD 263
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 2e-04
Identities = 37/309 (11%), Positives = 88/309 (28%), Gaps = 40/309 (12%)
Query: 104 TAYGKQGDFNKA----EKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQS 159
G+ ++A + L + + +V+ + L E G + A+ ++ +
Sbjct: 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 81
Query: 160 SGPRPSALTYQIILKLFVEAN------KFKEAEEVF---MTLLDEEKSPLKPDQKMFHMM 210
+ + + L ++ + A E L++E+ P + +
Sbjct: 82 MARQHDVW-HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 140
Query: 211 I-YMYKKAGGYEKARKLF----ALMAERGVQQSTVTYNSLMSFET---NYKEVSKIYDQ- 261
+ ++A +++ QQ L+ + ++
Sbjct: 141 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL 200
Query: 262 ---MQRAGLQPDVVSYALLINAY-----GKARREEEALAVFEEMLDAGVRPTHKAYNILL 313
+ D +S A + G L + A + +
Sbjct: 201 ENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260
Query: 314 DAFAISGMVDQARTVF----KCMRRDRCSPDICSYTTMLS-AYVNASDMEGAEKFFRRL- 367
A + G + A V + R R D+ +L+ Y A A++
Sbjct: 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320
Query: 368 ---KQDGFV 373
+ GF+
Sbjct: 321 KLANRTGFI 329
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 557 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.7 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.64 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.6 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.56 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.55 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.51 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.51 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.5 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.49 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.49 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.47 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.46 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.46 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.44 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.42 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.42 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.39 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.38 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.32 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.31 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.3 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.3 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.27 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.27 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.26 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.25 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.2 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.1 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.09 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.09 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.07 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.07 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.05 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.02 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.01 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.01 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.01 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.98 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.98 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.97 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.93 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.92 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.91 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.91 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.91 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.91 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.9 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.89 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.88 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.88 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.87 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.87 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.85 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.84 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.83 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.83 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.79 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.77 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.76 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.76 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.74 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.72 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.72 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.72 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.69 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.68 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.67 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.66 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.64 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.64 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.63 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.63 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.62 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.62 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.59 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.59 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.59 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.59 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.57 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.57 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.57 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.56 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.55 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.54 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.54 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.54 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.54 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.51 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.5 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.5 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.47 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.46 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.43 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.42 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.41 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.39 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.39 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.38 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.38 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.37 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.37 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.36 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.34 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.34 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.34 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.34 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.32 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.31 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.29 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.28 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.24 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.23 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.2 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.17 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.17 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.15 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.15 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.14 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.14 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.13 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.13 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.13 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.07 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.07 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.06 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.04 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.02 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.02 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.97 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.96 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.94 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.93 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.93 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.91 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.84 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.83 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.83 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.81 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.79 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.71 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.67 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.63 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.6 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.59 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.53 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.37 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.35 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.33 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.29 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.98 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.94 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.93 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.88 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.84 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.83 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.6 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.55 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.47 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.31 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.18 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.06 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.05 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.94 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.85 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.66 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.48 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.4 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.7 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.7 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.22 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.74 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.31 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.27 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.05 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.8 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.59 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 89.02 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 88.94 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.89 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.6 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.73 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.51 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.89 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 86.17 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 86.06 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 85.65 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 84.95 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.78 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 83.8 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 81.43 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.94 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.63 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 80.61 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=309.96 Aligned_cols=440 Identities=10% Similarity=0.005 Sum_probs=366.5
Q ss_pred hhchhcchhHHHHHHHHHhhC---hHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhh
Q 008708 22 AADEAGKKNWRRLMNQIEEVG---SAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMD 98 (557)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 98 (557)
..+.+++..|+.++..+.+.+ +|+..++.+. ...+ .+...+.....+...|+++.|.++|+.+... +.+..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~ 152 (597)
T 2xpi_A 78 TDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVL-DITG-NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSAC 152 (597)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHC-CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHH
T ss_pred cchHHHHHHHHHHHHHHHHccCchHHHHHHHHHH-hhCC-CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhH
Confidence 346678999999999887655 6777777543 2222 2233344445677889999999999987544 367889
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKK---------------GYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR 163 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 163 (557)
++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|+++|++|.+.++.
T Consensus 153 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 232 (597)
T 2xpi_A 153 RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK 232 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch
Confidence 999999999999999999999953221 22345889999999999999999999999999886543
Q ss_pred CCHHHHHHH--------------------------------------HHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHH
Q 008708 164 PSALTYQII--------------------------------------LKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQK 205 (557)
Q Consensus 164 ~~~~~~~~l--------------------------------------l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 205 (557)
+...+..+ +..|.+.|++++|.++|+++.+. +++..
T Consensus 233 -~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~ 306 (597)
T 2xpi_A 233 -CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-----EKSSD 306 (597)
T ss_dssp -CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-----GGCHH
T ss_pred -hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-----CchHH
Confidence 44443333 44566789999999999999742 58899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008708 206 MFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYG 282 (557)
Q Consensus 206 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (557)
+++.++.+|.+.|++++|..+|+++.+.+.. +..+++.+... .|++++|..+++.+.+.. +.+..++..++.+|.
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 384 (597)
T 2xpi_A 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYL 384 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 9999999999999999999999999977543 45556555543 699999999999998764 447889999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008708 283 KARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEK 362 (557)
Q Consensus 283 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 362 (557)
+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.+.|++++|.+
T Consensus 385 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 385 CVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998753 4568899999999999999999999999998764 4578999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcC--HHHHHHHHHHHHhcCChhHHHHHHHH
Q 008708 363 FFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPN--QTIFTTIMDAYGKNKDFDSAVVWYKE 436 (557)
Q Consensus 363 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 436 (557)
+|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|..++++
T Consensus 463 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 463 YLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999875 668999999999999999999999999999875 56777 78999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCC
Q 008708 437 MESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNE 478 (557)
Q Consensus 437 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (557)
+.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+.++.
T Consensus 542 ~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 542 GLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 98854 557899999999999999999999999998765553
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=290.47 Aligned_cols=419 Identities=10% Similarity=0.015 Sum_probs=353.1
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 008708 64 LGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR 143 (557)
Q Consensus 64 ~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 143 (557)
...+..+...++++.|.++++.+.... |+..++..++.+|.+.|++++|..+|+.+... +++..+++.++.+|.+
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 162 (597)
T 2xpi_A 88 RLWRHDALMQQQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVK 162 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCchHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHH
Confidence 344445677899999999999998654 57788999999999999999999999998654 6799999999999999
Q ss_pred cCChHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH
Q 008708 144 GGRYKNAEAIFRRMQSS---------------GPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH 208 (557)
Q Consensus 144 ~g~~~~A~~~~~~m~~~---------------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 208 (557)
.|++++|+++|+++... +.+++..+|..++.+|.+.|++++|.++|+++++.. +.+...+.
T Consensus 163 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~ 238 (597)
T 2xpi_A 163 LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD----AKCYEAFD 238 (597)
T ss_dssp TTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHH
T ss_pred HhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----chhhHHHH
Confidence 99999999999953222 123358899999999999999999999999998642 22333333
Q ss_pred H--------------------------------------HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc--
Q 008708 209 M--------------------------------------MIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF-- 248 (557)
Q Consensus 209 ~--------------------------------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-- 248 (557)
. ++..|.+.|++++|.++|+++.+. .++..+|+.+...
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 2 355667889999999999998875 4688888887765
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008708 249 -ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQART 327 (557)
Q Consensus 249 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 327 (557)
.|++++|..+|+.+.+.++. +..++..++.+|.+.|++++|..+++++.+.. +.+..+++.++.+|.+.|++++|..
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 69999999999999987643 77789999999999999999999999998653 5678899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 008708 328 VFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI 407 (557)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 407 (557)
+|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999998753 4478899999999999999999999999999875 6688999999999999999999999999999763
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCCCc
Q 008708 408 KPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESC----GFPPD--QKAKNILLSLAKTADERNEANELLGNFNHPNNEPGI 481 (557)
Q Consensus 408 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 481 (557)
+.+..+|..++.+|.+.|++++|..+|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.++....
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 457899999999999999999999999999874 66787 789999999999999999999999998755442211
Q ss_pred ccceeeccCCCCCCCCCCCCcccccccCCCCCC
Q 008708 482 NGLSISVDEEDDDDDDDEDDDDNIYHDGDGDGD 514 (557)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (557)
.+ ..++++|...|+|++
T Consensus 552 -~~---------------~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 552 -VH---------------TAIALVYLHKKIPGL 568 (597)
T ss_dssp -HH---------------HHHHHHHHHTTCHHH
T ss_pred -HH---------------HHHHHHHHHhCCHHH
Confidence 11 115677777777665
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-30 Score=255.21 Aligned_cols=205 Identities=17% Similarity=0.268 Sum_probs=181.5
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------HHH
Q 008708 255 VSKIYDQMQRAGLQPD-VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGM---------VDQ 324 (557)
Q Consensus 255 a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~ 324 (557)
+..+.+.+.+.+..+. ...++.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 3445566666555544 346888999999999999999999999999999999999999999987664 789
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 325 ARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 404 (557)
Q Consensus 325 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (557)
|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 008708 405 NGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTA 459 (557)
Q Consensus 405 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 459 (557)
.|+.||..+|++++.+|++.|++++|.+++++|.+.|..|+..||+.+...+...
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999887753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-26 Score=225.98 Aligned_cols=375 Identities=14% Similarity=0.094 Sum_probs=260.6
Q ss_pred hhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 008708 70 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKN 149 (557)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 149 (557)
+...|+++.|.+.+..+.+..+ .+...+..+...+.+.|++++|...++...+.. +.+..+|..+..+|.+.|++++
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 4456778888888877776652 455667777788888888888888888777653 4567788888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008708 150 AEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFAL 229 (557)
Q Consensus 150 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 229 (557)
|+..|+++.+..+. +..+|..+..++.+.|++++|.+.|+++++.. +.+...+..+...+...|++++|...|++
T Consensus 86 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 86 AIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN----PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC----TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 88888888775432 56678888888888888888888888887532 33455677777788888888888888888
Q ss_pred HHHcCCCCCHHHHHHHhc---ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 008708 230 MAERGVQQSTVTYNSLMS---FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH 306 (557)
Q Consensus 230 ~~~~~~~~~~~~~~~ll~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 306 (557)
+.+..+ .+...|..+.. ..|++++|...|+++.+..+. +...+..+...+...|++++|...+.+..... +.+.
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 776532 12334433322 356677777777777665432 45667777777777777777777777776643 3346
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 307 KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGY 386 (557)
Q Consensus 307 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 386 (557)
.++..+..+|...|++++|...|+++.+.. +.++.+|..+...+.+.|++++|...|+++.+.. +.+..++..++..+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 667777777777777777777777777653 3355667777777777777777777777776653 55677777777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcC
Q 008708 387 AKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP-DQKAKNILLSLAKTAD 460 (557)
Q Consensus 387 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g 460 (557)
...|++++|...++++.+.. +.+..++..++.+|.+.|++++|...++++.+. .| +...+..+...+...|
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 77777777777777776542 344667777777777777777777777777763 34 3455666665555444
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-26 Score=227.40 Aligned_cols=362 Identities=13% Similarity=0.064 Sum_probs=314.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 102 LITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 181 (557)
Q Consensus 102 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 181 (557)
+...+.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4667888999999999999998764 4467788888999999999999999999988864 4488899999999999999
Q ss_pred HHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HH---HHhcccCCHHHHHH
Q 008708 182 FKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVT-YN---SLMSFETNYKEVSK 257 (557)
Q Consensus 182 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~---~ll~~~~~~~~a~~ 257 (557)
+++|+..|+++++.. +.+..++..++.++.+.|++++|...|+++.+.. |+... +. .+....|++++|.+
T Consensus 83 ~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~ 156 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK----PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHcC----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHH
Confidence 999999999998642 4556789999999999999999999999999864 33332 22 23334799999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008708 258 IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC 337 (557)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 337 (557)
.|+.+.+..+ .+..+|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++.....
T Consensus 157 ~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~- 233 (388)
T 1w3b_A 157 CYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS- 233 (388)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 9999998743 367899999999999999999999999999864 4567789999999999999999999999988754
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 008708 338 SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTI 417 (557)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 417 (557)
+.+..++..+...|...|++++|...|+++.+.. +.+..+|..++.++.+.|++++|...|+++.+.. +.+..++..+
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 311 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNL 311 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHH
Confidence 3468899999999999999999999999999875 5578899999999999999999999999999863 6678999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC
Q 008708 418 MDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNN 477 (557)
Q Consensus 418 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (557)
...+.+.|++++|...++++.+.. +.+..++..+..++.+.|++++|...++++.+..+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999998842 45678899999999999999999999999876554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=245.41 Aligned_cols=183 Identities=19% Similarity=0.237 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccC------------CHHHHHHHHHHHHHCCCCCCHH
Q 008708 205 KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFET------------NYKEVSKIYDQMQRAGLQPDVV 272 (557)
Q Consensus 205 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~------------~~~~a~~~~~~~~~~~~~~~~~ 272 (557)
.+++.+|++|++.|++++|+++|++|.+.|+.||..+||.++.++. ..++|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 4577778888888888888888888887776666666665554321 1344455555555555555555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 273 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV 352 (557)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 352 (557)
||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 353 NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 387 (557)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 387 (557)
+.|+.++|.+++++|.+.|..|+..||+.++..|+
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 55555555555555555445555555555444444
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-22 Score=201.08 Aligned_cols=314 Identities=11% Similarity=0.090 Sum_probs=248.3
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 94 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 173 (557)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 173 (557)
.+...+..++..|.+.|++++|..+|+++.+.. +.+..+|..+..+|...|++++|+..|+++.+.++. +..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 456778889999999999999999999988763 457889999999999999999999999999887544 688889999
Q ss_pred HHHHHcCCHHHHHHHHHHhHhccCCCCCCCH---HHHHHHHHH------------HHHcCCHHHHHHHHHHHHHcCCCCC
Q 008708 174 KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQ---KMFHMMIYM------------YKKAGGYEKARKLFALMAERGVQQS 238 (557)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~l~~~------------~~~~g~~~~A~~~~~~~~~~~~~~~ 238 (557)
.+|...|++++|.+.|+++++.. +.+. ..+..++.. +...|++++|+..|+++.
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~------- 170 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN----PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL------- 170 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC----CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------
Confidence 99999999999999999998521 2333 555555444 455555555555555444
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008708 239 TVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI 318 (557)
Q Consensus 239 ~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 318 (557)
+.. +.+..++..++.+|.+.|++++|+..|+++.+.. +.+..++..+..+|..
T Consensus 171 -------------------------~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 171 -------------------------EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQ 223 (450)
T ss_dssp -------------------------HHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHH
T ss_pred -------------------------HhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 332 3367788888999999999999999999987753 4567888999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHH
Q 008708 319 SGMVDQARTVFKCMRRDRCSPDICSYTTM------------LSAYVNASDMEGAEKFFRRLKQDGFVPN-----VITYGT 381 (557)
Q Consensus 319 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~ 381 (557)
.|++++|...|+++.... +.+...+..+ +..|...|++++|...|+++.+.. |+ ...+..
T Consensus 224 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~ 300 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKER 300 (450)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHH
Confidence 999999999999888653 3344455444 788999999999999999998753 44 457888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 008708 382 LIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILL 453 (557)
Q Consensus 382 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~ 453 (557)
++.++.+.|++++|...++++.+.. +.+...|..++.+|...|++++|...++++.+ +.|+ ...+..+.
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 9999999999999999999988753 44688999999999999999999999999988 4554 45555555
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-23 Score=208.31 Aligned_cols=398 Identities=13% Similarity=0.072 Sum_probs=238.8
Q ss_pred HHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008708 67 LVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR 146 (557)
Q Consensus 67 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 146 (557)
...+...|+++.|.+.|+.+.+.. |+...|..++.+|.+.|++++|.+.|+++.+.+ +.+..+|..+..+|...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhh
Confidence 345667789999999999998876 478889999999999999999999999998875 4567899999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----------------------------------h
Q 008708 147 YKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMT----------------------------------L 192 (557)
Q Consensus 147 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~----------------------------------~ 192 (557)
+++|+..|+++...++. +......++..+........+.+.+.. .
T Consensus 89 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
T 2gw1_A 89 FADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167 (514)
T ss_dssp HHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence 99999999998877542 222222222222221111111111100 0
Q ss_pred HhccC-------CCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----cCCCCCH--------HHHHHHhc--
Q 008708 193 LDEEK-------SPLKPDQKMFHMMIYMYKK---AGGYEKARKLFALMAE-----RGVQQST--------VTYNSLMS-- 247 (557)
Q Consensus 193 ~~~~~-------~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~~~~~~~--------~~~~~ll~-- 247 (557)
..... ...+.+...+..+...+.. .|++++|..+|+++.+ ..-.|+. ..+..+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247 (514)
T ss_dssp HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence 00000 0002223344444444443 5666666666666655 2111211 11111111
Q ss_pred -ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 248 -FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQAR 326 (557)
Q Consensus 248 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 326 (557)
..|++++|...++.+.+..+. ...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|.
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 246666666666666655433 5566666666666667666766666666543 334556666666666666777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 008708 327 TVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 406 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (557)
..++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..++..+...|++++|...++++.+..
T Consensus 325 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 325 KDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 6666666543 2245566666666666677777777666666543 3345566666666666677777766666665421
Q ss_pred C-CcC----HHHHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC
Q 008708 407 I-KPN----QTIFTTIMDAYGK---NKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHP 475 (557)
Q Consensus 407 ~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (557)
. .++ ...+..+..++.. .|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+.
T Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 0 011 2256666666666 666777776666666532 334456666666666667777776666665543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-21 Score=196.73 Aligned_cols=329 Identities=12% Similarity=0.096 Sum_probs=266.0
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 63 VLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYG 142 (557)
Q Consensus 63 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 142 (557)
.+.....+...++++.|.++|+.+.+.. +.+...+..++.+|.+.|++++|...|+++.+.+ +.+..+|..+..+|.
T Consensus 29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 29 HLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 3444455677899999999999998765 3568899999999999999999999999999875 457889999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHH
Q 008708 143 RGGRYKNAEAIFRRMQSSGPRPSA---LTYQII------------LKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMF 207 (557)
Q Consensus 143 ~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~l------------l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 207 (557)
..|++++|...|+++.+..+. +. .++..+ ...+...|++++|...|+++++.. +.+..++
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~ 180 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC----VWDAELR 180 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHH
Confidence 999999999999999886433 33 555554 445889999999999999998642 5578899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008708 208 HMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARRE 287 (557)
Q Consensus 208 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (557)
..++.+|.+.|++++|+..|+++.+.. +.+..++..++.+|...|++
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK---------------------------------NDNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH---------------------------------CSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------------------CCCHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999887641 33677888899999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHH
Q 008708 288 EEALAVFEEMLDAGVRPTHKAYNIL------------LDAFAISGMVDQARTVFKCMRRDRCSPD-----ICSYTTMLSA 350 (557)
Q Consensus 288 ~~A~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~ 350 (557)
++|+..|+++.+.. +.+...+..+ ...+...|++++|..+|+++.+.. |+ ...+..+...
T Consensus 228 ~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 228 ELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHH
Confidence 99999999988753 3344445444 788899999999999999998753 33 4478888899
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH----------
Q 008708 351 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA---------- 420 (557)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~---------- 420 (557)
+.+.|++++|+..++++.... +.+..+|..++.+|...|++++|...|+++.+.. +-+...+..+..+
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~ 382 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKR 382 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccch
Confidence 999999999999999988764 5678899999999999999999999999998752 3346666666633
Q ss_pred --HHhcC-----ChhHHHHHHHHH
Q 008708 421 --YGKNK-----DFDSAVVWYKEM 437 (557)
Q Consensus 421 --~~~~g-----~~~~A~~~~~~m 437 (557)
|...| +.+++.+.++++
T Consensus 383 ~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 383 DYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp CSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred hHHHHhCCCccCCHHHHHHHHHHH
Confidence 33444 567778888763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-20 Score=192.31 Aligned_cols=394 Identities=13% Similarity=0.108 Sum_probs=232.0
Q ss_pred HHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008708 68 VRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRY 147 (557)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 147 (557)
..+...|+++.|.+.|+.+.+..+ .++..+..+..+|.+.|++++|.+.|+++.+.+ +.+..++..+..++...|++
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCH
Confidence 345667888888888888887753 467788888888888999999999998888765 44678888888888888999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhcc-------------------------------
Q 008708 148 KNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEE------------------------------- 196 (557)
Q Consensus 148 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~------------------------------- 196 (557)
++|+..|+ .....+.+.. ..+..+...+....|...++.++...
T Consensus 110 ~~A~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 110 TDAMFDLS-VLSLNGDFDG----ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HHHHHHHH-HHhcCCCCCh----HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 99988886 3332222111 11223333344445555555553210
Q ss_pred -CCCCCCCHH-HHHHHHHHHH--------HcCCHHHHHHHHHHHHHcCCCCCHH------HHHHH---hcccCCHHHHHH
Q 008708 197 -KSPLKPDQK-MFHMMIYMYK--------KAGGYEKARKLFALMAERGVQQSTV------TYNSL---MSFETNYKEVSK 257 (557)
Q Consensus 197 -~~~~~~~~~-~~~~l~~~~~--------~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l---l~~~~~~~~a~~ 257 (557)
.....+... ....+...+. ..|++++|..+|+++.+........ .+..+ ....+++++|..
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 000011111 2233332222 2246677777777666543221110 11111 112466667777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008708 258 IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC 337 (557)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 337 (557)
.++...+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+..
T Consensus 265 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 340 (537)
T 3fp2_A 265 LLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN- 340 (537)
T ss_dssp HHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-
Confidence 776666643 335566666666777777777777777766543 3355666666677777777777777777666543
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCcCHH
Q 008708 338 SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG-----IKPNQT 412 (557)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~ 412 (557)
+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+.. ......
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 2244566666677777777777777777666653 4455666666777777777777777777665421 111122
Q ss_pred HHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC
Q 008708 413 IFTTIMDAYGKN----------KDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHP 475 (557)
Q Consensus 413 ~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (557)
.+.....++.+. |++++|...++++.+.. +.+...+..+..++.+.|++++|...++++.+.
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 233444555555 77777777777766632 334556666667777777777777777665543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-19 Score=175.09 Aligned_cols=316 Identities=11% Similarity=0.073 Sum_probs=240.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 175 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 175 (557)
...+..+...+.+.|++++|...|+++.+.. +.+..+|..+..++...|++++|+..++++.+..+. +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 4567788888899999999999999888764 446888888999999999999999999988876433 67788888889
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCC----CHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 008708 176 FVEANKFKEAEEVFMTLLDEEKSPLKP----DQKMFHMM------------IYMYKKAGGYEKARKLFALMAERGVQQST 239 (557)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 239 (557)
+...|++++|...|+++++. .| +...+..+ ...+...|++++|...++++.+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------ 149 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS-----NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV------ 149 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHcCChHHHHHHHHHHHhc-----CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------
Confidence 99999999999999988742 23 33444444 35555556666666665555443
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 008708 240 VTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAIS 319 (557)
Q Consensus 240 ~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 319 (557)
. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...
T Consensus 150 --------------------------~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 201 (359)
T 3ieg_A 150 --------------------------C-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQL 201 (359)
T ss_dssp --------------------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHH
T ss_pred --------------------------C-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 2 2366778888888999999999999999988763 55778888888999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHH
Q 008708 320 GMVDQARTVFKCMRRDRCSPDICSYT------------TMLSAYVNASDMEGAEKFFRRLKQDGFVPNV----ITYGTLI 383 (557)
Q Consensus 320 g~~~~A~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~ 383 (557)
|++++|...|++..+.. +.+...+. .+...+.+.|++++|...++++.+.. +.+. ..+..+.
T Consensus 202 ~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la 279 (359)
T 3ieg_A 202 GDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERIC 279 (359)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH
Confidence 99999999999887653 22333333 23667889999999999999988754 3333 2355678
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHh
Q 008708 384 KGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAK 457 (557)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~ 457 (557)
.++...|++++|...++++.+.. +.+...|..+..++...|++++|...++++.+. .|+ ...+..+..+..
T Consensus 280 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 280 HCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 88999999999999999998753 446888999999999999999999999999884 454 455666555544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-21 Score=197.98 Aligned_cols=370 Identities=12% Similarity=0.022 Sum_probs=289.4
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 175 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 175 (557)
...+..+...+.+.|++++|+..|+++.... |+..+|..+..+|...|++++|+..++++.+.++. +..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 4567788999999999999999999999875 79999999999999999999999999999987543 77899999999
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------------------CCC
Q 008708 176 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER-------------------GVQ 236 (557)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~ 236 (557)
+...|++++|...|++++... +++......++..+........+.+.+..+... ...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG----DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS----SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HHHHhhHHHHHHHHHHHHhcC----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 999999999999999998643 233333333444333332222322222111100 000
Q ss_pred ------------------------CC-HHHHH-HHh-c----ccCCHHHHHHHHHHHHH-----CCCC--------CCHH
Q 008708 237 ------------------------QS-TVTYN-SLM-S----FETNYKEVSKIYDQMQR-----AGLQ--------PDVV 272 (557)
Q Consensus 237 ------------------------~~-~~~~~-~ll-~----~~~~~~~a~~~~~~~~~-----~~~~--------~~~~ 272 (557)
|+ ...+. ..+ . ..+++++|...|+.+.+ .... .+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 11 11111 111 1 15789999999999987 3111 2356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 273 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV 352 (557)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 352 (557)
++..+...+...|++++|...++++.+.. |+..++..+..++...|++++|...++++.... +.+..++..+...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHH
Confidence 78888999999999999999999998875 348889999999999999999999999998764 446778999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHH
Q 008708 353 NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVV 432 (557)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 432 (557)
..|++++|...++++.+.. +.+...+..++..|...|++++|..+++++.+.. +.+...+..+..++...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999875 5577889999999999999999999999998753 4467889999999999999999999
Q ss_pred HHHHHHhCC-CCCC----HHHHHHHHHHHhh---cCCHHHHHHHHHhcCCCCC
Q 008708 433 WYKEMESCG-FPPD----QKAKNILLSLAKT---ADERNEANELLGNFNHPNN 477 (557)
Q Consensus 433 ~~~~m~~~~-~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~ 477 (557)
.++++.+.. -.++ ...+..+...+.. .|++++|...++++....+
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 999997631 0111 3388889999999 9999999999999875443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.6e-19 Score=170.81 Aligned_cols=319 Identities=12% Similarity=0.070 Sum_probs=259.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 008708 130 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 209 (557)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 209 (557)
++..+..+...+...|++++|+..|+++.+..+. +..++..+...+...|++++|...++++++.. +.+...+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~ 76 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK----MDFTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCcchHHHH
Confidence 4677888999999999999999999999887543 78899999999999999999999999998642 446788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC-CH-HHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 008708 210 MIYMYKKAGGYEKARKLFALMAERGVQQ-ST-VTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARRE 287 (557)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~-~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (557)
++.++...|++++|...|+++.+..... +. ..+..+ ..+. ....+..+...+...|++
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l--------------~~~~------~~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL--------------VKAD------EMQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH--------------HHHH------HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHH--------------HHHH------HHHHHHHHHHHHHHccCH
Confidence 9999999999999999999998753200 11 111111 0000 112344567889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 288 EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 367 (557)
Q Consensus 288 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (557)
++|+..++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998864 5678899999999999999999999999998764 557889999999999999999999999999
Q ss_pred HhCCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCChhHHH
Q 008708 368 KQDGFVPNVITYG------------TLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ----TIFTTIMDAYGKNKDFDSAV 431 (557)
Q Consensus 368 ~~~~~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~ 431 (557)
.+.. +.+...+. .++..+.+.|++++|...++++.+.. +.+. ..+..+..++...|++++|.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 8764 44444443 33677999999999999999998753 2233 33556788999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCC
Q 008708 432 VWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNE 478 (557)
Q Consensus 432 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (557)
..++++.+.. +.+...+..+...+...|++++|...++++.+.++.
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999998842 447789999999999999999999999998876553
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-19 Score=185.47 Aligned_cols=366 Identities=14% Similarity=0.070 Sum_probs=284.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 175 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 175 (557)
...+..+...+.+.|++++|.+.|+++.... +.+..+|..+..+|...|++++|++.|+++.+.++. +..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 4567889999999999999999999999875 458899999999999999999999999999887544 78899999999
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCHHHHHHH----
Q 008708 176 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER------GVQQSTVTYNSL---- 245 (557)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l---- 245 (557)
+...|++++|...|+.+ . ..|+. ....+..+...+....|...++.+... ...|+.......
T Consensus 103 ~~~~g~~~~A~~~~~~~-~-----~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-S-----LNGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHcCCHHHHHHHHHHH-h-----cCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 99999999999999744 2 12221 222344555666677888888887542 122222222111
Q ss_pred -------------------------hc------------ccCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHH
Q 008708 246 -------------------------MS------------FETNYKEVSKIYDQMQRAGLQPD-------VVSYALLINAY 281 (557)
Q Consensus 246 -------------------------l~------------~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~ 281 (557)
+. ..+++++|..+++.+.+..+. + ..++..+...+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFH 253 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHH
Confidence 11 124678889999998876433 2 23567777889
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 282 GKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAE 361 (557)
Q Consensus 282 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 361 (557)
...|++++|...++++.+. .|+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999986 4668889999999999999999999999998764 447888999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 008708 362 KFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG 441 (557)
Q Consensus 362 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 441 (557)
..++++.+.. +.+...+..+..+|...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 331 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 9999998865 5567889999999999999999999999999763 4567889999999999999999999999987621
Q ss_pred -----CCCCHHHHHHHHHHHhhc----------CCHHHHHHHHHhcCCCCC
Q 008708 442 -----FPPDQKAKNILLSLAKTA----------DERNEANELLGNFNHPNN 477 (557)
Q Consensus 442 -----~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~ 477 (557)
.......+.....++... |++++|...++++....+
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 459 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC
Confidence 111122344555677777 999999999999875544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.8e-19 Score=168.66 Aligned_cols=290 Identities=11% Similarity=0.019 Sum_probs=143.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 95 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 174 (557)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 174 (557)
+...+..++..+...|++++|.++|+++.+.. +.+...+..++.++...|++++|...++++.+..+. +...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 33444455555555555555555555554432 223334444445555555555555555555443222 3444444445
Q ss_pred HHHHcC-CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHH
Q 008708 175 LFVEAN-KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYK 253 (557)
Q Consensus 175 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 253 (557)
.+...| ++++|.+.|+++++.. +.+...+..++.++...|++++|...|+++.
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~---------------------- 152 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE----KTYGPAWIAYGHSFAVESEHDQAMAAYFTAA---------------------- 152 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC----TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHH----------------------
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHccCHHHHHHHHHHHH----------------------
Confidence 555555 5555555555554311 2233444445555555555555555444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 254 EVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMR 333 (557)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 333 (557)
+.. +.+...+..+...|...|++++|...+++..
T Consensus 153 ---------------------------------------------~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 186 (330)
T 3hym_B 153 ---------------------------------------------QLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQAL 186 (330)
T ss_dssp ---------------------------------------------HHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------------------------------------------Hhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 332 1122333334444444444444444444444
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 334 RDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG--------FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 334 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
+.. +.+...+..+...+...|++++|...++++.... .+.+..++..++.+|...|++++|...++++.+.
T Consensus 187 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 187 SIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp TTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 332 2234445555555555555555555555544320 1233455666666666666666666666666654
Q ss_pred CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hhcCC
Q 008708 406 GIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLA-KTADE 461 (557)
Q Consensus 406 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~ 461 (557)
. +.+...+..+..++.+.|++++|...++++.+.. +.+...+..+..++ ...|+
T Consensus 266 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 266 I-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp S-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred C-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 2 3345566666666666666666666666666532 22444555555555 34444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-16 Score=159.25 Aligned_cols=347 Identities=16% Similarity=0.140 Sum_probs=171.2
Q ss_pred HhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHH
Q 008708 96 EMDFLMLITAYGK----QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR----GGRYKNAEAIFRRMQSSGPRPSAL 167 (557)
Q Consensus 96 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~ 167 (557)
+..+..|...|.. .+++++|...|++..+.| +..++..|...|.. .+++++|++.|++..+.| ++.
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 112 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ 112 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 3444444444444 455555555555554442 44455555555554 455555555555554432 334
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCH
Q 008708 168 TYQIILKLFVE----ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK----AGGYEKARKLFALMAERGVQQST 239 (557)
Q Consensus 168 ~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 239 (557)
.+..+...|.. .+++++|...|++..+. -+...+..|...|.. .+++++|+..|++..+.| +.
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~ 183 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NV 183 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44444444444 44555555555555431 133444445555544 445555555555554443 12
Q ss_pred HHHHHHhc---c----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 008708 240 VTYNSLMS---F----ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK----ARREEEALAVFEEMLDAGVRPTHKA 308 (557)
Q Consensus 240 ~~~~~ll~---~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 308 (557)
..+..+-. . .++.++|...|+...+.+ +...+..+...|.. .+++++|..+|++..+.+ +...
T Consensus 184 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 257 (490)
T 2xm6_A 184 WSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIA 257 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHH
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 11111111 1 344555555555554432 34444555555544 455555555555555432 3344
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHH
Q 008708 309 YNILLDAFAI----SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNA-----SDMEGAEKFFRRLKQDGFVPNVITY 379 (557)
Q Consensus 309 ~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~ 379 (557)
+..+...|.. .++.++|..+|++..+.+ ++..+..+...|... +++++|...|++..+.+ +...+
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 4445555554 555555555555555432 344445555555554 55555555555555543 33444
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 380 GTLIKGYAKVN---NLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK----NKDFDSAVVWYKEMESCGFPPDQKAKNIL 452 (557)
Q Consensus 380 ~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 452 (557)
..+...|...| ++++|.++|++..+.+ +...+..+...|.. .+++++|..+|++..+.| ++..+..+
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L 405 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 45555555444 4555555555555542 44455555555555 555555555555555533 34445555
Q ss_pred HHHHhh----cCCHHHHHHHHHhcCCC
Q 008708 453 LSLAKT----ADERNEANELLGNFNHP 475 (557)
Q Consensus 453 ~~~~~~----~g~~~~a~~~~~~~~~~ 475 (557)
...|.. .++.++|...+++....
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 555554 55555555555555433
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-18 Score=166.80 Aligned_cols=285 Identities=11% Similarity=-0.025 Sum_probs=207.0
Q ss_pred ChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 59 PKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALM 138 (557)
Q Consensus 59 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 138 (557)
..+..+.....+...++++.|.++++.+.+..+ .+...+..++.++.+.|++++|..+++++.+.. +.+..+|..+.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP--FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 334455555666777999999999999988764 456677788999999999999999999998864 44788999999
Q ss_pred HHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc
Q 008708 139 EAYGRGG-RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA 217 (557)
Q Consensus 139 ~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (557)
..+...| ++++|...|++.....+. +...+..+...+...|++++|.+.++++++.. +.+...+..+...|...
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM----KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT----TTCSHHHHHHHHHHHHT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHH
Confidence 9999999 999999999999987544 67789999999999999999999999998642 33456777789999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008708 218 GGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEM 297 (557)
Q Consensus 218 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 297 (557)
|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 173 ~~~~~A~~~~~~al~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA---------------------------------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp TCHHHHHHHHHHHHTTC---------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhC---------------------------------CCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 99999999998887642 235677888888888888888888888887
Q ss_pred HHcCC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 298 LDAGV--------RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 369 (557)
Q Consensus 298 ~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (557)
.+... +....++..+..+|...|++++|...+++..+.. +.+...+..+...+...|++++|...|+++.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 65310 2223455555555666666666666665555432 22344455555555555555555555555444
Q ss_pred CCCCCCHHHHHHHHHHH
Q 008708 370 DGFVPNVITYGTLIKGY 386 (557)
Q Consensus 370 ~~~~p~~~~~~~l~~~~ 386 (557)
.. +.+...+..+..++
T Consensus 299 ~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 299 LR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp TC-SCCHHHHHHHHHHH
T ss_pred cC-CCchHHHHHHHHHH
Confidence 32 33444444444444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-16 Score=158.87 Aligned_cols=335 Identities=14% Similarity=0.147 Sum_probs=286.3
Q ss_pred ccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 008708 73 LKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGK----QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR----G 144 (557)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~ 144 (557)
.++++.|.+.++...+.+ ++..+..|...|.. .+++++|.+.|++..+.| +..++..|...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 578999999999988775 56788899999999 999999999999999875 78888999999988 8
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH----
Q 008708 145 GRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE----ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK---- 216 (557)
Q Consensus 145 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 216 (557)
+++++|+..|++....| ++..+..+...|.. .+++++|.+.|++..+. .+...+..|...|..
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~ 199 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ------GNVWSCNQLGYMYSRGLGV 199 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHhcCCCC
Confidence 89999999999998865 56778888888887 78999999999999862 367888999999998
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHH---hc----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 008708 217 AGGYEKARKLFALMAERGVQQSTVTYNSL---MS----FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK----AR 285 (557)
Q Consensus 217 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---l~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 285 (557)
.+++++|...|++..+.+. ...+..+ .. ..+++++|...|+...+.+ +...+..+...|.. .+
T Consensus 200 ~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~ 273 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSGD---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAK 273 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSC
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCC
Confidence 8999999999999998753 2222222 21 1578999999999998764 56777888888888 89
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CH
Q 008708 286 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAIS-----GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS---DM 357 (557)
Q Consensus 286 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~ 357 (557)
++++|+.+|++..+.| +...+..+...|... +++++|...|++..+.+ +...+..+...|...| ++
T Consensus 274 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~ 347 (490)
T 2xm6_A 274 EPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEH 347 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHH
T ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccH
Confidence 9999999999998764 567788888888887 89999999999999865 6678888888888867 88
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChhH
Q 008708 358 EGAEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK----NKDFDS 429 (557)
Q Consensus 358 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 429 (557)
++|.+.|++..+.+ +...+..|...|.. .+++++|...|++..+.+ +...+..+...|.+ .+++++
T Consensus 348 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~ 421 (490)
T 2xm6_A 348 KKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQ 421 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999999874 67888899999998 899999999999999865 57788889998988 899999
Q ss_pred HHHHHHHHHhCC
Q 008708 430 AVVWYKEMESCG 441 (557)
Q Consensus 430 A~~~~~~m~~~~ 441 (557)
|..+|++..+.+
T Consensus 422 A~~~~~~A~~~~ 433 (490)
T 2xm6_A 422 AWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC
Confidence 999999999865
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=9.2e-19 Score=170.19 Aligned_cols=288 Identities=8% Similarity=-0.024 Sum_probs=186.6
Q ss_pred cCChHHHHH-HHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCC
Q 008708 144 GGRYKNAEA-IFRRMQSSGPR---PSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG 219 (557)
Q Consensus 144 ~g~~~~A~~-~~~~m~~~~~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 219 (557)
.|++++|++ .+++.....+. .+...+..+...+...|++++|...|+++++.. +.+..++..++.++...|+
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD----PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC----TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCcC
Confidence 355666665 55544332211 123345555566666666666666666665421 3345556666666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008708 220 YEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 299 (557)
Q Consensus 220 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 299 (557)
+++|+..|+++.+.. +.+..++..+...|...|++++|...++++.+
T Consensus 114 ~~~A~~~~~~al~~~---------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 114 ELLAISALRRCLELK---------------------------------PDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC---------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666555431 12444555566666666666666666666655
Q ss_pred cCCCCCHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 300 AGVRPTHKAYN---------------ILLDAFAISGMVDQARTVFKCMRRDRCSP-DICSYTTMLSAYVNASDMEGAEKF 363 (557)
Q Consensus 300 ~~~~~~~~~~~---------------~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~ 363 (557)
... .+...+. ..+..+...|++++|...|+++.+..... +..++..+...|...|++++|...
T Consensus 161 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 161 YTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp TST-TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 421 1111111 02333337888888888888887653221 578888888888899999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 008708 364 FRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFP 443 (557)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 443 (557)
++++.... +.+..++..++.++...|++++|...|+++.+.. +.+...+..+..+|.+.|++++|...++++.+.. +
T Consensus 240 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~ 316 (368)
T 1fch_A 240 FTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-R 316 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 98888764 5567888888999999999999999999888753 4457888888889999999999999998887621 1
Q ss_pred CC-----------HHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 444 PD-----------QKAKNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 444 p~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
.+ ..+|..+..++...|+.++|..+.++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp TC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 12 578888889999999999998887653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.9e-19 Score=170.15 Aligned_cols=266 Identities=8% Similarity=-0.044 Sum_probs=198.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 008708 165 SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNS 244 (557)
Q Consensus 165 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 244 (557)
+...+..+...+.+.|++++|..+|+++++.. +.+..++..++.+|...|++++|+..|+++.+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------- 129 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD----PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ---------- 129 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----------
Confidence 34456677777777888888888888777532 4456777778888888888888887777776541
Q ss_pred HhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHH
Q 008708 245 LMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT-----------HKAYNILL 313 (557)
Q Consensus 245 ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~li 313 (557)
+.+..++..+..+|...|++++|+..|+++.+.. |+ ...+..+.
T Consensus 130 -----------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~ 184 (365)
T 4eqf_A 130 -----------------------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMS 184 (365)
T ss_dssp -----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC---------------
T ss_pred -----------------------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHH
Confidence 2246667777777888888888888888776642 21 22344557
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 314 DAFAISGMVDQARTVFKCMRRDRCS-PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNL 392 (557)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 392 (557)
..+...|++++|..+|+++.+.... ++..++..+...|...|++++|+..|+++.+.. +.+..+|..++.+|...|++
T Consensus 185 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp ----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 7888889999999999988876422 168888999999999999999999999988764 66788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCC--------CHHHHHHHHHHHhhcCC
Q 008708 393 EKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG---FPP--------DQKAKNILLSLAKTADE 461 (557)
Q Consensus 393 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~p--------~~~~~~~l~~~~~~~g~ 461 (557)
++|...|+++.+.. +.+..+|..+..+|.+.|++++|...++++++.. ..+ +...|..+..++...|+
T Consensus 264 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 264 EEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence 99999999998753 4458889999999999999999999999987621 011 24678899999999999
Q ss_pred HHHHHHHHHh
Q 008708 462 RNEANELLGN 471 (557)
Q Consensus 462 ~~~a~~~~~~ 471 (557)
.+.+..+.++
T Consensus 343 ~~~a~~~~~~ 352 (365)
T 4eqf_A 343 PELFQAANLG 352 (365)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999998876
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.2e-18 Score=164.29 Aligned_cols=307 Identities=12% Similarity=0.008 Sum_probs=216.4
Q ss_pred HHhcCChhHHHH-HHHHHHhCCCC-C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 106 YGKQGDFNKAEK-VLSFMNKKGYA-P--SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 181 (557)
Q Consensus 106 ~~~~g~~~~A~~-~~~~~~~~g~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 181 (557)
+...|++++|.+ .|++....... | +...+..+...+...|++++|+..|+++.+..+. +..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcC
Confidence 344577888887 77765543211 1 3456778888888888899999988888887543 77788888888888899
Q ss_pred HHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHH
Q 008708 182 FKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQ 261 (557)
Q Consensus 182 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~ 261 (557)
+++|...|+++++.. +.+..++..++.+|...|++++|...|+++......... .+..+ +...
T Consensus 114 ~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~----~~~~-------- 176 (368)
T 1fch_A 114 ELLAISALRRCLELK----PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH-LVTPA----EEGA-------- 176 (368)
T ss_dssp HHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG-GCC------------------
T ss_pred HHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH-HHHHH----HHHh--------
Confidence 999999988887642 456778888888899999999999999888875422111 11000 0000
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008708 262 MQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRP-THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPD 340 (557)
Q Consensus 262 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 340 (557)
. ...+ ...+..+...+ ..|++++|...|+++.+..... +..++..+...|...|++++|...|+++.... +.+
T Consensus 177 --~-~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 177 --G-GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred --h-hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 0 0000 11122233333 8889999999999988764221 57888888999999999999999999887653 446
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC----------
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN---------- 410 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---------- 410 (557)
..++..+...+...|++++|...|+++.+.. +.+..++..++.+|.+.|++++|...|+++.+.. +.+
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 328 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAM 328 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccch
Confidence 7888999999999999999999999988764 5678889999999999999999999999887632 112
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008708 411 -QTIFTTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 411 -~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
..+|..+..+|...|++++|..++++.+
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 6789999999999999999988876543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-15 Score=155.41 Aligned_cols=393 Identities=11% Similarity=0.100 Sum_probs=288.9
Q ss_pred hhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCChH
Q 008708 70 LKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAY-GRGGRYK 148 (557)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~-~~~g~~~ 148 (557)
+...++.+.|..+++.+.+.. +.+...|..++..+.+.|++++|..+|+++.... |++..|...+... ...|+.+
T Consensus 22 ~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~ 97 (530)
T 2ooe_A 22 EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLP 97 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTST
T ss_pred HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchh
Confidence 455688999999999998775 4577889999999999999999999999999873 6888888887543 4467777
Q ss_pred HHHH----HHHHHHh-CCCC-CCHHHHHHHHHHHHH---------cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH
Q 008708 149 NAEA----IFRRMQS-SGPR-PSALTYQIILKLFVE---------ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM 213 (557)
Q Consensus 149 ~A~~----~~~~m~~-~~~~-~~~~~~~~ll~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 213 (557)
.|.+ +|++... .|.. ++...|...+....+ .|+++.|..+|+++++. +..+....|......
T Consensus 98 ~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~ 174 (530)
T 2ooe_A 98 SYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKY 174 (530)
T ss_dssp THHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHH
Confidence 6655 7776654 3433 356777777776554 68899999999999842 111112344333221
Q ss_pred H-------------HHcCCHHHHHHHHHHHH------HcC---CCCC--------HHHHHHHhcc-------cCCH----
Q 008708 214 Y-------------KKAGGYEKARKLFALMA------ERG---VQQS--------TVTYNSLMSF-------ETNY---- 252 (557)
Q Consensus 214 ~-------------~~~g~~~~A~~~~~~~~------~~~---~~~~--------~~~~~~ll~~-------~~~~---- 252 (557)
. ...+++..|..++.... +.. +.|+ ...|...+.. .++.
T Consensus 175 e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~ 254 (530)
T 2ooe_A 175 EEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLIT 254 (530)
T ss_dssp HHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHH
T ss_pred HHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHH
Confidence 1 12356777877776632 211 2333 2344444432 1222
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008708 253 KEVSKIYDQMQRAGLQPDVVSYALLINAYGK-------ARREE-------EALAVFEEMLDAGVRPTHKAYNILLDAFAI 318 (557)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 318 (557)
.++..+|++..... +-+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 46778898888763 3367888888888875 78876 899999999863234568899999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCHHHH
Q 008708 319 SGMVDQARTVFKCMRRDRCSP-DI-CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKG-YAKVNNLEKM 395 (557)
Q Consensus 319 ~g~~~~A~~~~~~~~~~~~~~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a 395 (557)
.|++++|..+|+++.+. .| +. ..|...+..+.+.|++++|.++|++..+.. +.+...|...+.. +...|++++|
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHH
Confidence 99999999999999985 34 33 589999999999999999999999998863 3333444333322 3468999999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 396 MEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG-FPPD--QKAKNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 396 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
..+|++.++.. +.+...|..++..+.+.|+.++|..+|++++..+ ..|+ ...|...+......|+.+.+..+.+++
T Consensus 411 ~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 411 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998752 3468899999999999999999999999999853 2332 347888888889999999999999887
Q ss_pred CC
Q 008708 473 NH 474 (557)
Q Consensus 473 ~~ 474 (557)
.+
T Consensus 490 ~~ 491 (530)
T 2ooe_A 490 FT 491 (530)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-17 Score=162.28 Aligned_cols=276 Identities=10% Similarity=-0.026 Sum_probs=203.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 008708 130 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 209 (557)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 209 (557)
+...|..+...+.+.|++++|+..|+++.+..+. +..++..+..++...|++++|+..|+++++.. +.+..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ----PNNLKALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCCHHHHHH
Confidence 3445677777777777777777777777765433 67777777888888888888888888877532 345677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 008708 210 MIYMYKKAGGYEKARKLFALMAERGVQQSTVT-YNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREE 288 (557)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 288 (557)
++.+|...|++++|+..|+++.+.. |+... +.. .......+..+...+...|+++
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKN----------------------KKGSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-----------------------------------------CCHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhh----------------------hccchHHHHHHHHHHhhhhhHH
Confidence 8888888888888888888877642 11000 000 0012334566778889999999
Q ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 289 EALAVFEEMLDAGVR-PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 367 (557)
Q Consensus 289 ~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (557)
+|+..|+++.+.... ++..++..+...|...|++++|...|+++.+.. +.+..+|..+..+|...|++++|+..|+++
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999886422 168899999999999999999999999988764 457889999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CC--------cCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008708 368 KQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG---IK--------PNQTIFTTIMDAYGKNKDFDSAVVWYKE 436 (557)
Q Consensus 368 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 436 (557)
.+.. +.+..++..+..+|.+.|++++|...|+++.+.. .. .+..+|..+..++...|+.+.+..+.++
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8864 5568899999999999999999999999988631 00 1257899999999999999998887765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-15 Score=154.77 Aligned_cols=374 Identities=12% Similarity=0.108 Sum_probs=275.1
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 94 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 173 (557)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 173 (557)
.+...|..++. +.+.|++++|..+|+++.+.. |.+...|...+..+.+.|++++|..+|++++... |+...|...+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 46778888888 478999999999999999873 5578899999999999999999999999998864 5777777776
Q ss_pred HHH-HHcCCHHHHHH----HHHHhHhccCCCC-CCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCCCC
Q 008708 174 KLF-VEANKFKEAEE----VFMTLLDEEKSPL-KPDQKMFHMMIYMYKK---------AGGYEKARKLFALMAERGVQQS 238 (557)
Q Consensus 174 ~~~-~~~g~~~~A~~----~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~ 238 (557)
... ...|+.+.|.+ +|+.++.. .+. +++...|...+..... .|+++.|..+|++..+....+.
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~--~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDK--IGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHH--TTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 533 35577776655 77777642 122 2456788888877665 7899999999999988311111
Q ss_pred HHHHHHHhc----------------ccCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHhc-
Q 008708 239 TVTYNSLMS----------------FETNYKEVSKIYDQMQ------RAG---LQPD--------VVSYALLINAYGKA- 284 (557)
Q Consensus 239 ~~~~~~ll~----------------~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~li~~~~~~- 284 (557)
...|..... ..+++..|..++..+. +.. ++|+ ...|...+......
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 233332211 1345666766666532 111 2343 24555555433322
Q ss_pred ---CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHhCCCCCCHHH
Q 008708 285 ---RRE----EEALAVFEEMLDAGVRPTHKAYNILLDAFAI-------SGMVD-------QARTVFKCMRRDRCSPDICS 343 (557)
Q Consensus 285 ---g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~ 343 (557)
++. ..+..+|++++... +.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...
T Consensus 245 ~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 245 LRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp SCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 222 47788999988763 4577888888888776 68877 99999999986333557889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-H
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV-ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA-Y 421 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~ 421 (557)
|..++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.|++++|.++|++..+.. +.+...|...+.. +
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHH
Confidence 9999999999999999999999999863 2233 589999999999999999999999999752 2233444333322 3
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC
Q 008708 422 GKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNN 477 (557)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (557)
...|++++|..+|+..++.. +.++..|..++..+.+.|+.++|+.++++.....+
T Consensus 402 ~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 46899999999999998742 44678899999999999999999999999875543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=8.3e-17 Score=153.40 Aligned_cols=153 Identities=10% Similarity=0.065 Sum_probs=88.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 281 YGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGA 360 (557)
Q Consensus 281 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (557)
+...|++++|...++++.+.. +.+..++..+...|...|++++|...++++.+.. +.+..++..+...+...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 555666677777777666543 3355566666666666666666666666665432 23455566666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-----------CHHHHHHHHHHHHhcCChhH
Q 008708 361 EKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP-----------NQTIFTTIMDAYGKNKDFDS 429 (557)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~ 429 (557)
...++++.+.. +.+..++..+..+|...|++++|.+.++++.+..... +...|..+..++.+.|++++
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 66666655543 3345556666666666666666666666655431110 24455555555556666666
Q ss_pred HHHHHHH
Q 008708 430 AVVWYKE 436 (557)
Q Consensus 430 A~~~~~~ 436 (557)
|..++++
T Consensus 305 A~~~~~~ 311 (327)
T 3cv0_A 305 VELTYAQ 311 (327)
T ss_dssp HHHHTTC
T ss_pred HHHHHHH
Confidence 5555543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-16 Score=151.03 Aligned_cols=153 Identities=11% Similarity=0.077 Sum_probs=135.1
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 316 FAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKM 395 (557)
Q Consensus 316 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 395 (557)
+...|++++|...++++.+.. +.+..++..+...|...|++++|...++++.+.. +.+..++..++..+...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 677889999999999998764 4478899999999999999999999999998864 56788999999999999999999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHhhcCCH
Q 008708 396 MEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-------------QKAKNILLSLAKTADER 462 (557)
Q Consensus 396 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-------------~~~~~~l~~~~~~~g~~ 462 (557)
...++++.+.. +.+...+..+..++...|++++|...++++.+. .|+ ...+..+..++...|+.
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 99999998753 456889999999999999999999999999873 344 57888999999999999
Q ss_pred HHHHHHHHhcC
Q 008708 463 NEANELLGNFN 473 (557)
Q Consensus 463 ~~a~~~~~~~~ 473 (557)
++|..++++..
T Consensus 303 ~~A~~~~~~~l 313 (327)
T 3cv0_A 303 DLVELTYAQNV 313 (327)
T ss_dssp HHHHHHTTCCS
T ss_pred HHHHHHHHHHH
Confidence 99999998654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-16 Score=148.90 Aligned_cols=251 Identities=10% Similarity=0.104 Sum_probs=137.4
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 141 YGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGY 220 (557)
Q Consensus 141 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 220 (557)
....|+++.|+..+++.....+.+.......+.++|...|+++.|+..++. ..+|+..++..+...+...++.
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-------~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-------SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-------TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-------cCChhHHHHHHHHHHHcCCCcH
Confidence 344566666666555543322221122334445566666666665553322 1234445555555555555666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008708 221 EKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA 300 (557)
Q Consensus 221 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 300 (557)
++|++.++++...+..|+ +...+..+..++...|++++|+..+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~-------------------------------~~~~~~~la~~~~~~g~~~~Al~~l~~---- 126 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVT-------------------------------NTTFLLMAASIYFYDQNPDAALRTLHQ---- 126 (291)
T ss_dssp HHHHHHHHHHHHSCCCCS-------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHTT----
T ss_pred HHHHHHHHHHHhcccCCC-------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHhC----
Confidence 666666555554321111 333444555556666666666666654
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 008708 301 GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSY---TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVI 377 (557)
Q Consensus 301 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 377 (557)
+.+...+..++..|.+.|++++|...|+++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+..
T Consensus 127 --~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~ 201 (291)
T 3mkr_A 127 --GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLL 201 (291)
T ss_dssp --CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHH
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHH
Confidence 3455556666666666666666666666665542 222111 112222333466777777777766653 55666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhH-HHHHHHHHHh
Q 008708 378 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS-AVVWYKEMES 439 (557)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 439 (557)
.++.+..++.+.|++++|...|+++.+.. +.+..++..++..+...|+.++ +.++++++.+
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 67777777777777777777777766542 3356666667766667777654 4566666665
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=9e-16 Score=154.47 Aligned_cols=364 Identities=11% Similarity=0.004 Sum_probs=245.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----
Q 008708 94 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKK--------GYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS----- 160 (557)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 160 (557)
.....|+.|..++...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567999999999999999999999987542 12335778999999999999999999999887642
Q ss_pred C--CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHc
Q 008708 161 G--PRPSALTYQIILKLFVEA--NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM---YKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 161 ~--~~~~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~ 233 (557)
+ ......++.....++... +++++|+..|+++++.. |.+...+..+..+ +...++.++|++.+++..+.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~----p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK----PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1 112456676666666554 47999999999998753 3445566655554 34567888999999998876
Q ss_pred CCCCCHHHHHHHh-------cccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 008708 234 GVQQSTVTYNSLM-------SFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH 306 (557)
Q Consensus 234 ~~~~~~~~~~~ll-------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 306 (557)
... +...+..+. ...+++++|.+.++......+ .+..++..+...|...|++++|+..+++..+.. +.+.
T Consensus 205 ~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 281 (472)
T 4g1t_A 205 NPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNA 281 (472)
T ss_dssp CSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred CCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChH
Confidence 432 233332221 124678899999999887653 367888999999999999999999999998864 4456
Q ss_pred HHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 307 KAYNILLDAFAIS-------------------GMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRL 367 (557)
Q Consensus 307 ~~~~~li~~~~~~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (557)
.++..+..+|... +.++.|...+++..... +.+..++..+...|...|++++|+..|++.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 6777776665432 23567777787776543 334566788889999999999999999998
Q ss_pred HhCCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 008708 368 KQDGFVPNVI--TYGTLIK-GYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP 444 (557)
Q Consensus 368 ~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 444 (557)
.+....|... .+..+.. .....|++++|+..|++.++. .|+....... ...+..+++..++.. +.
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~~~~~~l~~~-p~ 428 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQKIAKMRLSKN-GA 428 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHHHHHHHHHHHC-C-
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHHHHHHHHHHhC-CC
Confidence 8764332221 2233332 234678999999999998874 4554332222 233455566665533 55
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC
Q 008708 445 DQKAKNILLSLAKTADERNEANELLGNFNHPNN 477 (557)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (557)
+..++..+..++...|++++|.+.+++..+.++
T Consensus 429 ~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 429 DSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp CTTHHHHHHHHHHHHHHCC--------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 678899999999999999999999999886554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-17 Score=156.55 Aligned_cols=283 Identities=12% Similarity=0.140 Sum_probs=106.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008708 108 KQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEE 187 (557)
Q Consensus 108 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 187 (557)
+.|++++|.++++++. +..+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4455666666666662 2236666666666666666666666442 355566666666666666666666
Q ss_pred HHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHH
Q 008708 188 VFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQR 264 (557)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~a~~~~~~~~~ 264 (557)
+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+... .|++++|...|..+
T Consensus 83 yl~~ark~-----~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 83 YLQMARKK-----ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHh-----CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 66555421 2335556666666666666666665553 1333344433332 24444444444433
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008708 265 AGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSY 344 (557)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 344 (557)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+...
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhH
Confidence 24677777777777777777777776 26677777777777777777775544332 2233444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCc------CHHHHHHH
Q 008708 345 TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV-NGIKP------NQTIFTTI 417 (557)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~p------~~~~~~~l 417 (557)
..++..|.+.|++++|..+++...... +-....|+-|..+|++- ++++.++.++.... .+++| +...|..+
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 457777777777777777777776654 55566677776666653 23333333322221 12333 34456677
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 008708 418 MDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 418 ~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+..|...++++.|.. .|.+
T Consensus 289 ~~ly~~~~e~d~A~~---tm~~ 307 (449)
T 1b89_A 289 VFLYDKYEEYDNAII---TMMN 307 (449)
T ss_dssp HHHHHHTTCHHHHHH---HHHH
T ss_pred HHHHHhhchHHHHHH---HHHh
Confidence 777777777776654 4555
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-15 Score=140.39 Aligned_cols=252 Identities=12% Similarity=0.094 Sum_probs=163.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 104 TAYGKQGDFNKAEKVLSFMNKKGYAPS--VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK 181 (557)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 181 (557)
+-....|++..|+..++...... |+ ......+.++|...|+++.|+..++. . .+|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCc
Confidence 34455677777777776654432 22 23445566777777777777765543 1 34456666777777777777
Q ss_pred HHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHH
Q 008708 182 FKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQ 261 (557)
Q Consensus 182 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~ 261 (557)
.++|++.+++++... ..+.+...+..+...+...|++++|+..+++
T Consensus 81 ~~~A~~~l~~ll~~~--~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------------------------------- 126 (291)
T 3mkr_A 81 RDAIVAELDREMSRS--VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------------------------------- 126 (291)
T ss_dssp HHHHHHHHHHHHHSC--CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------------------------------
T ss_pred HHHHHHHHHHHHhcc--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------------------------------
Confidence 777777777776421 1233555666677777777777777777644
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008708 262 MQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAY---NILLDAFAISGMVDQARTVFKCMRRDRCS 338 (557)
Q Consensus 262 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 338 (557)
+.+...+..++..|.+.|++++|...|+++.+.. |+.... ...+..+...|++++|..+|+++.+. .+
T Consensus 127 ------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p 197 (291)
T 3mkr_A 127 ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CS 197 (291)
T ss_dssp ------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SC
T ss_pred ------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CC
Confidence 1245566667777777777777777777776653 332211 11223333447777777777777765 24
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHC
Q 008708 339 PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEK-MMEIYDKMRVN 405 (557)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 405 (557)
.++..++.+..++.+.|++++|...|+++.... +.+..++..++..+...|+.++ +.++++++.+.
T Consensus 198 ~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 198 PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 567777777777778888888888887777654 5567777777777777777765 46777777764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-17 Score=172.05 Aligned_cols=119 Identities=11% Similarity=0.193 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQ---DGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTI 417 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 417 (557)
..|||++|.+|++.|++++|.++|.+|.+ .|+.||..|||+||++||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45677777777777777777777766653 367788888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 008708 418 MDAYGKNKDF-DSAVVWYKEMESCGFPPDQKAKNILLSLAKTA 459 (557)
Q Consensus 418 ~~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 459 (557)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 8888887764 67778888888778888888887777655544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-17 Score=170.11 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEML---DAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTT 346 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 346 (557)
-..||+++|++|++.|++++|..+|.+|. ..|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34567777777777777777777776654 346677777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 347 MLSAYVNASD-MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 388 (557)
Q Consensus 347 li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 388 (557)
+|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 7777777776 46677777777777777777777777765544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.70 E-value=5.2e-13 Score=141.99 Aligned_cols=315 Identities=13% Similarity=0.138 Sum_probs=235.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 100 LMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA 179 (557)
Q Consensus 100 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 179 (557)
..+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -++.+|..+..++.+.
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhC
Confidence 4467778888999999999988631 3333444433 677889998888864 2577888999999999
Q ss_pred CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHHH
Q 008708 180 NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVS 256 (557)
Q Consensus 180 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~a~ 256 (557)
|++++|++.|.+. .|...|..++.++.+.|++++|.++|....+....+...+. +..+ .+++++..
T Consensus 1119 G~~kEAIdsYiKA---------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~--LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA---------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETE--LIFALAKTNRLAELE 1187 (1630)
T ss_pred CCHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHH--HHHHHHhhcCHHHHH
Confidence 9999999999665 46778888999999999999999999888776533323332 2222 24555433
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008708 257 KIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR 336 (557)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 336 (557)
.. .+ .++...|..+...|...|++++|..+|... ..|..+..+|++.|+++.|.+.+++..
T Consensus 1188 ~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~--- 1248 (1630)
T 1xi4_A 1188 EF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--- 1248 (1630)
T ss_pred HH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC---
Confidence 22 22 346677778999999999999999999985 378899999999999999999998773
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 008708 337 CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTT 416 (557)
Q Consensus 337 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 416 (557)
+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..+... +-....|+-
T Consensus 1249 ---n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftE 1319 (1630)
T 1xi4_A 1249 ---STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTE 1319 (1630)
T ss_pred ---CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHH
Confidence 678999999999999999988887654 34566777899999999999999999998887543 334566766
Q ss_pred HHHHHHhc--CChhHHHHHHHHHHhCCCCC------CHHHHHHHHHHHhhcCCHHHHHHHH
Q 008708 417 IMDAYGKN--KDFDSAVVWYKEMESCGFPP------DQKAKNILLSLAKTADERNEANELL 469 (557)
Q Consensus 417 l~~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~ 469 (557)
+..+|.+. ++..++.++|..-.. ++| +...|..+.-.|.+.|+++.|...+
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 77766653 445555555553322 333 3467888889999999999998544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-15 Score=144.73 Aligned_cols=279 Identities=11% Similarity=0.109 Sum_probs=127.0
Q ss_pred hccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 008708 72 QLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAE 151 (557)
Q Consensus 72 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 151 (557)
..++.+.|.++++.+. .+.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 4566788888887772 2458999999999999999999999653 57779999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 152 AIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMA 231 (557)
Q Consensus 152 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 231 (557)
..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT----------CC----------------CTTTHHHHHHHT-
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 987777663 4457888899999999999999887763 366679999999999999999999999976
Q ss_pred HcCCCCCHHHHHHHhc---ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 008708 232 ERGVQQSTVTYNSLMS---FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKA 308 (557)
Q Consensus 232 ~~~~~~~~~~~~~ll~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 308 (557)
..|..+.. ..|++++|.+.++.+ .++.+|..++.+|...|+++.|......+ ...+.-
T Consensus 149 --------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~ 209 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADE 209 (449)
T ss_dssp --------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHH
T ss_pred --------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhh
Confidence 24444444 478999999999988 27899999999999999999996655542 234444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCC------CHHHHH
Q 008708 309 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNA--SDMEGAEKFFRRLKQDGFVP------NVITYG 380 (557)
Q Consensus 309 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~ 380 (557)
...++..|.+.|.+++|..+++...... +.....|+-+.-.|++- ++..+.++.|.. ..+++| +...|.
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHH
Confidence 5678999999999999999999998665 55667787777777654 344444444431 223333 455688
Q ss_pred HHHHHHHHcCCHHHHHHH
Q 008708 381 TLIKGYAKVNNLEKMMEI 398 (557)
Q Consensus 381 ~l~~~~~~~g~~~~a~~~ 398 (557)
.+...|.+.++++.|...
T Consensus 287 e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhchHHHHHHH
Confidence 999999999999988764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=8e-15 Score=130.58 Aligned_cols=201 Identities=17% Similarity=0.078 Sum_probs=163.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 268 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 347 (557)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 347 (557)
+++...+..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3566788889999999999999999999998764 4577889999999999999999999999998764 4477889999
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 008708 348 LSAYVNA-----------SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTT 416 (557)
Q Consensus 348 i~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 416 (557)
...+... |++++|+..|++..+.. |.+...+..+..++...|++++|+..|+++.+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999998875 5678899999999999999999999999999876 68899999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCC
Q 008708 417 IMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNH 474 (557)
Q Consensus 417 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 474 (557)
+..+|...|++++|+..++++++.. |.+...+..+..++...|++++|...+++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 9999999999999999999998843 44667888999999999999999999987653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.7e-14 Score=129.14 Aligned_cols=98 Identities=11% Similarity=0.137 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC----HHHH
Q 008708 132 VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD----QKMF 207 (557)
Q Consensus 132 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~ 207 (557)
..|..+...+...|++++|+..|++..+.. .+..++..+..++...|++++|...+.++++..+. ..++ ..++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE-MRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc-cccchHHHHHHH
Confidence 345555555555555555555555555544 44555555555555555555555555555532110 0111 3455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 208 HMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 208 ~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
..+...+...|++++|...|+++..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5566666666666666666655554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.5e-12 Score=134.26 Aligned_cols=350 Identities=13% Similarity=0.123 Sum_probs=245.4
Q ss_pred hHHHHHHHHHhhhccchHHHHHHHHHHHhcCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 60 KDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSW-WDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALM 138 (557)
Q Consensus 60 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 138 (557)
++.+-.+...+...+.+.+|+++++.+...+. +.-+....+.|+.+..+. +..+..++.++.... + ...+.
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA 1056 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIA 1056 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHH
Confidence 34444455555667777788888877774432 223344555566666655 445555555444321 1 33366
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC
Q 008708 139 EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 218 (557)
Q Consensus 139 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 218 (557)
..+...|.+++|..+|++.. ........++ -..+++++|.++.+++ .+..+|..++.++...|
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv---------n~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC---------NEPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHhCC
Confidence 77788899999999998852 1222223333 2678889999888766 24678889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008708 219 GYEKARKLFALMAERGVQQSTVTYNSLMSF---ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFE 295 (557)
Q Consensus 219 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 295 (557)
++++|+..|.+. .+...|..+... .|+++++.+.|....+... +....+.++.+|++.+++++...+
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~f-- 1189 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEF-- 1189 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHH--
Confidence 999999999664 355555555543 6889999999988877643 333334588889999888854433
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 008708 296 EMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN 375 (557)
Q Consensus 296 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 375 (557)
++ .++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+
T Consensus 1190 --I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n 1249 (1630)
T 1xi4_A 1190 --IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NS 1249 (1630)
T ss_pred --Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CC
Confidence 22 456677778899999999999999999875 37889999999999999999999866 35
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 008708 376 VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLS 454 (557)
Q Consensus 376 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~ 454 (557)
..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+. +.+.. ..|.-+..
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELai 1322 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAI 1322 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHH
Confidence 688888899999999998888876643 34677788999999999999999999988875 34433 45655665
Q ss_pred HHhh--cCCHHHHHHHHHh
Q 008708 455 LAKT--ADERNEANELLGN 471 (557)
Q Consensus 455 ~~~~--~g~~~~a~~~~~~ 471 (557)
++.+ .++..++.+++..
T Consensus 1323 LyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 5554 3455555555543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.3e-14 Score=128.80 Aligned_cols=225 Identities=13% Similarity=0.060 Sum_probs=167.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CC----HHHH
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PS----ALTY 169 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~----~~~~ 169 (557)
...+..+...+...|++++|...|+++.+.. .+..+|..+..++...|++++|+..+++..+..+. ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567889999999999999999999999886 68899999999999999999999999998775332 12 5788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhccc
Q 008708 170 QIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFE 249 (557)
Q Consensus 170 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 249 (557)
..+...+...|++++|...|+++++. .|+. ..+.+.|++++|...++++....
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~-------~~~~~~~~~~~a~~~~~~~~~~~--------------- 135 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE-----HRTA-------DILTKLRNAEKELKKAEAEAYVN--------------- 135 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCH-------HHHHHHHHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc-----Cchh-------HHHHHHhHHHHHHHHHHHHHHcC---------------
Confidence 89999999999999999999999864 2442 34556677777777777766531
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 250 TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVF 329 (557)
Q Consensus 250 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 329 (557)
+.+...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...|
T Consensus 136 ------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 136 ------------------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp ------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 1134556777777888888888888888877653 345666667777777777777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 330 KCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 369 (557)
Q Consensus 330 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (557)
++..+.. +.+..++..+...+...|++++|...+++..+
T Consensus 197 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 197 NKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7666543 33455566666666666666666666666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-14 Score=126.16 Aligned_cols=200 Identities=15% Similarity=0.065 Sum_probs=122.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHH
Q 008708 128 APSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMF 207 (557)
Q Consensus 128 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 207 (557)
|++...+..+...+.+.|++++|+..|++.++..+. +...+..+..++.+.|++++|+..++++++.. +.+...+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~ 76 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART----PRYLGGY 76 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHH
Confidence 456667777777777888888888888877776443 67777777777788888888888888777532 3456677
Q ss_pred HHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 008708 208 HMMIYMYKKA-----------GGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYAL 276 (557)
Q Consensus 208 ~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 276 (557)
..+..++... |++++|+..|++..+. . +-+...+..
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------------------------------~-P~~~~~~~~ 123 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------------------------------N-PRYAPLHLQ 123 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------------------------------C-TTCHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------------------------------C-cccHHHHHH
Confidence 7777777666 5555555555555443 1 124556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 277 LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD 356 (557)
Q Consensus 277 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (557)
+..++...|++++|+..|++..+.. .+...+..+..+|...|++++|...|++..+.. +.+...+..+...+...|+
T Consensus 124 lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 124 RGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccC
Confidence 6667777777777777777776655 566666666666777777777777776666542 3345556666666666666
Q ss_pred HHHHHHHHHHHH
Q 008708 357 MEGAEKFFRRLK 368 (557)
Q Consensus 357 ~~~A~~~~~~m~ 368 (557)
+++|...+++..
T Consensus 201 ~~~A~~~~~~~~ 212 (217)
T 2pl2_A 201 AEEAARAAALEH 212 (217)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 666666665543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.1e-13 Score=133.69 Aligned_cols=313 Identities=12% Similarity=0.028 Sum_probs=225.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccC---
Q 008708 129 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS--------GPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEK--- 197 (557)
Q Consensus 129 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--- 197 (557)
.....||.|...+...|++++|++.|++..+. .......+|..+..+|...|++++|...++++++...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34678999999999999999999999987542 1223567899999999999999999999998875311
Q ss_pred CC-CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHh------cccCCHHHHHHHHHHHHHCCCC
Q 008708 198 SP-LKPDQKMFHMMIYMYKKA--GGYEKARKLFALMAERGVQQSTVTYNSLM------SFETNYKEVSKIYDQMQRAGLQ 268 (557)
Q Consensus 198 ~~-~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~ll------~~~~~~~~a~~~~~~~~~~~~~ 268 (557)
.. ......++..+..++.+. +++++|+..|++..+..+. +...+..+. ...++.++|.+.+++..+..+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 11 123456777777666665 4699999999999886432 222222221 124667788888888877643
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 008708 269 PDVVSYALLINAYGK----ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSY 344 (557)
Q Consensus 269 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 344 (557)
.+..++..+...+.. .+++++|...+++..... +.+..++..+...|...|++++|...+++..+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 356666666655554 457789999999988764 5677889999999999999999999999998764 3466677
Q ss_pred HHHHHHHHHc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 345 TTMLSAYVNA-------------------SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 345 ~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
..+...|... +.++.|...++...+.. +.+..++..+...|...|++++|...|++.++.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 7776665432 33567888888877754 556677888999999999999999999999876
Q ss_pred CCCcCH--HHHHHHHH-HHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 008708 406 GIKPNQ--TIFTTIMD-AYGKNKDFDSAVVWYKEMESCGFPPDQKA 448 (557)
Q Consensus 406 ~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 448 (557)
...|.. ..+..+.. .+...|++++|+..+++.++ +.|+...
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~ 407 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSRE 407 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHH
Confidence 433322 12333333 34578999999999999988 5666543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-13 Score=127.52 Aligned_cols=131 Identities=11% Similarity=0.077 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHH
Q 008708 97 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PSALTYQIILK 174 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~ll~ 174 (557)
..+......+...|++++|+..|+++.+.. +.+..++..+..+|...|++++|+..+++....... ....+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 445556666667777777777777766653 224446666666677777777777777666653211 12334566666
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 175 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
.+...|++++|++.|+++++.. +.+..++..+..+|...|++++|+..|++..+
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD----TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS----TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred HHHHcccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 6666666666666666666432 23345566666666666666666666655544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-13 Score=131.51 Aligned_cols=229 Identities=7% Similarity=0.018 Sum_probs=147.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 97 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR-YKNAEAIFRRMQSSGPRPSALTYQIILKL 175 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 175 (557)
..|..+..++.+.|++++|++.|++++... +.+..+|+.+..++...|+ +++|+..|++.+...+. +...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 456677777777888888888888877764 3357777888888888886 88888888887776544 67777777777
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHH
Q 008708 176 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEV 255 (557)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a 255 (557)
+...|++++|+..|+++++.. +.+..+|..+..++...|++++|+..|+++++..
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld----P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--------------------- 230 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD----AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--------------------- 230 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---------------------
T ss_pred HHHccCHHHHHHHHHHHHHhC----ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---------------------
Confidence 777888888888888777543 4566777777777777777777777777776642
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHH
Q 008708 256 SKIYDQMQRAGLQPDVVSYALLINAYGK-ARREEEA-----LAVFEEMLDAGVRPTHKAYNILLDAFAISG--MVDQART 327 (557)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~ 327 (557)
+-+...|+.+..++.. .|..++| +..|++.+... +-+...|..+..++...| ++++|+.
T Consensus 231 ------------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 231 ------------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLN 297 (382)
T ss_dssp ------------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHH
T ss_pred ------------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHH
Confidence 2245566666666666 4443555 35565555542 234455555555555555 3555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHH
Q 008708 328 VFKCMRRDRCSPDICSYTTMLSAYVNAS---------DMEGAEKFFRRL 367 (557)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~A~~~~~~m 367 (557)
.+.++ + ..+.+...+..++..|.+.| ..++|+++|+++
T Consensus 298 ~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 298 QLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHh-c-cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 55554 2 22334455555555555542 135555555555
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.61 E-value=5e-13 Score=122.00 Aligned_cols=207 Identities=12% Similarity=0.050 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008708 204 QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK 283 (557)
Q Consensus 204 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (557)
...+..++..+...|++++|...|+++.+.. +.+...+..+...|..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------------------------------~~~~~~~~~la~~~~~ 83 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID---------------------------------PSSADAHAALAVVFQT 83 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---------------------------------CChHHHHHHHHHHHHH
Confidence 4567778888888999999998888877641 2356778888889999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 008708 284 ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP-DICSYTTMLSAYVNASDMEGAEK 362 (557)
Q Consensus 284 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 362 (557)
.|++++|...++++.+.. +.+...+..+...|...|++++|..+++++...+..| +...+..+...+...|++++|..
T Consensus 84 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 84 EMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999988764 4467788888999999999999999999988732334 45678888889999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 008708 363 FFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 442 (557)
Q Consensus 363 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 442 (557)
.++++.+.. +.+...+..++..|...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+.
T Consensus 163 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-- 238 (252)
T 2ho1_A 163 YFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL-- 238 (252)
T ss_dssp HHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--
Confidence 999988764 5568888899999999999999999999988753 456778888888899999999999999999873
Q ss_pred CCCHHH
Q 008708 443 PPDQKA 448 (557)
Q Consensus 443 ~p~~~~ 448 (557)
.|+...
T Consensus 239 ~p~~~~ 244 (252)
T 2ho1_A 239 YPGSLE 244 (252)
T ss_dssp CTTSHH
T ss_pred CCCCHH
Confidence 454433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-13 Score=125.99 Aligned_cols=249 Identities=16% Similarity=0.102 Sum_probs=153.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc
Q 008708 169 YQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF 248 (557)
Q Consensus 169 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 248 (557)
+......+...|++++|+..|+++++.. +.+..++..+..+|...|++++|+..++++.+.. ++
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~---------- 69 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK----YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NA---------- 69 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT----CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CT----------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--Cc----------
Confidence 3344455566666666666666665422 2233355566666666666666666666655421 00
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 249 ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTV 328 (557)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 328 (557)
......+|..+...+...|++++|+..|++..+.. +.+..++..+...|...|++++|...
T Consensus 70 ------------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 130 (272)
T 3u4t_A 70 ------------------TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQY 130 (272)
T ss_dssp ------------------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHH
Confidence 01123445666666777777777777777766643 33456677777777777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHC
Q 008708 329 FKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN---LEKMMEIYDKMRVN 405 (557)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~ 405 (557)
|++..+.. +.+...+..+...+...+++++|...|+++.+.. +.+...+..+..++...|+ +++|...++++.+.
T Consensus 131 ~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 131 MEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 77776542 3455666666634444458888888888777654 4456777777777777777 77788888777653
Q ss_pred C-CCcC------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 008708 406 G-IKPN------QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLA 456 (557)
Q Consensus 406 ~-~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~ 456 (557)
. -.|+ ...|..+...|.+.|++++|...++++.+. .|+ ...+..+....
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKKAIDGLKMKL 265 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHC---
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHHHHHHhhhhh
Confidence 1 1122 256777788888888888888888888873 443 44444444433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.4e-12 Score=116.68 Aligned_cols=223 Identities=14% Similarity=0.055 Sum_probs=139.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHH
Q 008708 165 SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK----AGGYEKARKLFALMAERGVQQSTV 240 (557)
Q Consensus 165 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 240 (557)
++.++..+...+...|++++|.+.|++.++ +.+...+..+...|.. .+++++|...|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------ 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------ 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------
Confidence 344455555555556666666666665553 2233455555555555 566666665555554421
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 008708 241 TYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK----ARREEEALAVFEEMLDAGVRPTHKAYNILLDAF 316 (557)
Q Consensus 241 ~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 316 (557)
+...+..+...|.. .+++++|+..|++..+.+ +...+..+...|
T Consensus 73 -----------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 120 (273)
T 1ouv_A 73 -----------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIY 120 (273)
T ss_dssp -----------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred -----------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHH
Confidence 44455556666666 666666666666666643 555666666666
Q ss_pred HH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 317 AI----SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN----ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 388 (557)
Q Consensus 317 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 388 (557)
.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 121 ~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 121 HDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHH 194 (273)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 66 667777777776666654 45556666666666 677777777777766653 45566667777777
Q ss_pred ----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhC
Q 008708 389 ----VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK----NKDFDSAVVWYKEMESC 440 (557)
Q Consensus 389 ----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~ 440 (557)
.+++++|...|++..+.+ +...+..+...|.. .+++++|..++++..+.
T Consensus 195 g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 195 GEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp TCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 777777777777777653 25566666667766 77777777777777664
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-12 Score=119.12 Aligned_cols=229 Identities=14% Similarity=0.097 Sum_probs=198.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008708 202 PDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAY 281 (557)
Q Consensus 202 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (557)
-+..++..+...|...|++++|+..|++..+. -+...+..+...|
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----------------------------------~~~~a~~~lg~~~ 48 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL-----------------------------------KENSGCFNLGVLY 48 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----------------------------------TCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----------------------------------CCHHHHHHHHHHH
Confidence 35667888888888999999999988877663 2456777888889
Q ss_pred Hh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 282 GK----ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI----SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN 353 (557)
Q Consensus 282 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (557)
.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 49 ~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 49 YQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHD 122 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHc
Confidence 99 999999999999999875 78889999999999 999999999999999875 78899999999999
Q ss_pred ----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh--
Q 008708 354 ----ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK-- 423 (557)
Q Consensus 354 ----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-- 423 (557)
.+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~ 196 (273)
T 1ouv_A 123 GKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGE 196 (273)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTC
T ss_pred CCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 999999999999999875 67788889999998 999999999999999864 56788889999999
Q ss_pred --cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHhcCCCCCCCC
Q 008708 424 --NKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKT----ADERNEANELLGNFNHPNNEPG 480 (557)
Q Consensus 424 --~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~ 480 (557)
.+++++|..++++..+.+ +...+..+...+.. .+++++|...+++..+.++...
T Consensus 197 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 197 GATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred CCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999854 36778888889998 9999999999999876665443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-14 Score=131.16 Aligned_cols=189 Identities=13% Similarity=0.002 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 272 VSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAY 351 (557)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (557)
.++..+...|...|++++|...|+++.+.. +.+..++..+..+|...|++++|...|+++.+.. |+.......+..+
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~ 154 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLA 154 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHH
Confidence 334444444444444444444444444331 1223344444444444444444444444444321 1211222222223
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---cCHHHHHHHHHHHHhcCChh
Q 008708 352 VNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIK---PNQTIFTTIMDAYGKNKDFD 428 (557)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~---p~~~~~~~l~~~~~~~g~~~ 428 (557)
...|++++|...+++..... +++...+. ++..+...++.++|...++++.+.... .+...+..+..+|.+.|+++
T Consensus 155 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 232 (275)
T 1xnf_A 155 EQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD 232 (275)
T ss_dssp HHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHH
Confidence 33455555555554444332 22222222 344444445555555555554432100 01345555556666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 008708 429 SAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELL 469 (557)
Q Consensus 429 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 469 (557)
+|...++++.+. .|+. +.....++...|++++|.+.+
T Consensus 233 ~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 233 SATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 666666666552 2322 111233444555555555443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-13 Score=129.87 Aligned_cols=248 Identities=10% Similarity=0.075 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 008708 131 VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK-FKEAEEVFMTLLDEEKSPLKPDQKMFHM 209 (557)
Q Consensus 131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 209 (557)
..+|+.+...+...|++++|+..+++.+...+. +..+|..+..++...|+ +++|+..|++++... +.+..+|+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~----P~~~~a~~~ 171 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ----PKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC----CCCHHHHHH
Confidence 567888888888888999999999888886544 67788888888888886 888888888888643 456778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 008708 210 MIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEE 289 (557)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 289 (557)
+..++...|++++|+..|+++++.. +-+...|..+..++.+.|++++
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ld---------------------------------P~~~~a~~~lg~~~~~~g~~~e 218 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQD---------------------------------AKNYHAWQHRQWVIQEFKLWDN 218 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC---------------------------------ccCHHHHHHHHHHHHHcCChHH
Confidence 8888888888888888888877642 2366778888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHH
Q 008708 290 ALAVFEEMLDAGVRPTHKAYNILLDAFAI-SGMVDQA-----RTVFKCMRRDRCSPDICSYTTMLSAYVNAS--DMEGAE 361 (557)
Q Consensus 290 A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~ 361 (557)
|+..|+++++.. +.+...|+.+..++.. .|..++| +..|++.+... +-+...|+.+...+...| ++++|+
T Consensus 219 Al~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 219 ELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHH
Confidence 888888888764 3467778888888877 5554666 46666665543 335566666666666666 466777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-HHCCCCcCHHHHHHHHHHH
Q 008708 362 KFFRRLKQDGFVPNVITYGTLIKGYAKVN---------NLEKMMEIYDKM-RVNGIKPNQTIFTTIMDAY 421 (557)
Q Consensus 362 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---------~~~~a~~~~~~m-~~~~~~p~~~~~~~l~~~~ 421 (557)
+.+.++ +. .+.+...+..++.+|.+.| .+++|.++|+++ .+.. +.....|..+...+
T Consensus 297 ~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 297 NQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred HHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 777666 32 2455666666777766653 246677777776 4432 22344454444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.8e-13 Score=117.83 Aligned_cols=201 Identities=9% Similarity=0.030 Sum_probs=143.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 008708 203 DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYG 282 (557)
Q Consensus 203 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (557)
+..++..++..+...|++++|...|+++.+.. +.+...+..+...|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~ 53 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD---------------------------------PKNELAWLVRAEIYQ 53 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---------------------------------ccchHHHHHHHHHHH
Confidence 45566777777777778777777777766541 224556777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 008708 283 KARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAIS-GMVDQARTVFKCMRRDRCSP-DICSYTTMLSAYVNASDMEGA 360 (557)
Q Consensus 283 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A 360 (557)
..|++++|...++++.+.. +.+..++..+...+... |++++|...++++.+.+..| +...+..+...+...|++++|
T Consensus 54 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 132 (225)
T 2vq2_A 54 YLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLA 132 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888777653 34566777777777788 88888888888777632223 256677777778888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 361 EKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIK-PNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
...++++.+.. +.+...+..++.++...|++++|...++++.+.. + .+...+..+...+...|+.+.|..+++.+.+
T Consensus 133 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 133 EAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 88888777653 4457777778888888888888888888877643 3 4566677777777778888888888877765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-13 Score=136.53 Aligned_cols=371 Identities=14% Similarity=0.088 Sum_probs=235.7
Q ss_pred HhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 008708 69 RLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDF---NKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG 145 (557)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 145 (557)
.+...++++.|.+.++.+.+.+ ++..+..|..+|...|+. ++|.+.|++..+. +...+..+...+...|
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 3455688999999999988775 345566788888888888 8999999988854 6667777777555555
Q ss_pred -----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc
Q 008708 146 -----RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKE---AEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA 217 (557)
Q Consensus 146 -----~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (557)
++++|+..|++..+.|... .+..+...|...+..+. +.+.+....+. .+......|...|...
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~------g~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAA------GYPEAGLAQVLLYRTQ 154 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH------TCTTHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC------CCHHHHHHHHHHHHcC
Confidence 7889999999998876543 66677777777765444 44444444321 2345677788888888
Q ss_pred CCHHHHHHHHHHHHHcC--CCCCHH-HHHHHhcccC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCH
Q 008708 218 GGYEKARKLFALMAERG--VQQSTV-TYNSLMSFET---NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA----RRE 287 (557)
Q Consensus 218 g~~~~A~~~~~~~~~~~--~~~~~~-~~~~ll~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~ 287 (557)
+.++++......+.+.- ..|+.. ....+....| +.++|...|+.....|. ++...+..+...|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCH
Confidence 85555444433332211 123311 1111222356 78889999999888874 3566556777777555 689
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----CHHH
Q 008708 288 EEALAVFEEMLDAGVRPTHKAYNILLDA-F--AISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS-----DMEG 359 (557)
Q Consensus 288 ~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~ 359 (557)
++|+.+|++.. . .+...+..|... | ...+++++|..+|++..+.+ ++..+..+...|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 99999999887 3 355666677766 4 46889999999999988876 7778888888887 55 8999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChhHHH
Q 008708 360 AEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK----NKDFDSAV 431 (557)
Q Consensus 360 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 431 (557)
|...|++.. +-+...+..|...|.. ..++++|..+|++..+.| +......+...|.. ..++.+|.
T Consensus 306 A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 306 AEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 999999877 3467778888877776 348999999999998876 33445556666653 46889999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 432 VWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 432 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
.+|+...+.| .++.......+......++..+|..+.++..
T Consensus 379 ~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 379 VFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999998876 3333333233333344567778888887655
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-13 Score=124.15 Aligned_cols=211 Identities=15% Similarity=0.132 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 008708 204 QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK 283 (557)
Q Consensus 204 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (557)
...+..++..+...|++++|...|+++.+. .+.+...+..+...+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---------------------------------~~~~~~~~~~la~~~~~ 69 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEE---------------------------------NKEDAIPYINFANLLSS 69 (243)
T ss_dssp -------------------CCTTHHHHHTT---------------------------------CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---------------------------------CcccHHHHHHHHHHHHH
Confidence 345556666666677777777766666553 12245666677777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 284 ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKF 363 (557)
Q Consensus 284 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 363 (557)
.|++++|+..++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 70 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~ 147 (243)
T 2q7f_A 70 VNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPY 147 (243)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 777777777777776653 3456677777777777778888877777776643 34566777777788888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 008708 364 FRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFP 443 (557)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 443 (557)
++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+..++..+..+|...|++++|...++++.+.. +
T Consensus 148 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p 224 (243)
T 2q7f_A 148 LQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-P 224 (243)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-T
T ss_pred HHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-c
Confidence 88877653 4567778888888888888888888888877653 3457778888888888888888888888887732 2
Q ss_pred CCHHHHHHH
Q 008708 444 PDQKAKNIL 452 (557)
Q Consensus 444 p~~~~~~~l 452 (557)
.+...+..+
T Consensus 225 ~~~~~~~~~ 233 (243)
T 2q7f_A 225 DHMLALHAK 233 (243)
T ss_dssp TCHHHHHHH
T ss_pred chHHHHHHH
Confidence 233444433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-13 Score=122.73 Aligned_cols=203 Identities=14% Similarity=0.111 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 271 VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSA 350 (557)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 350 (557)
...+..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|...++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4668888999999999999999999998864 4578889999999999999999999999998764 4478889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhH
Q 008708 351 YVNASDMEGAEKFFRRLKQDGFVP-NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 429 (557)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 429 (557)
|...|++++|.++++++...+..| +...+..++.++...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998732334 56788899999999999999999999998763 4468889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC
Q 008708 430 AVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNN 477 (557)
Q Consensus 430 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (557)
|..+++++.+.. +.+...+..+...+...|+.++|.+.++++.+..+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 999999998743 55677888889999999999999999998865443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-13 Score=128.31 Aligned_cols=121 Identities=11% Similarity=-0.025 Sum_probs=73.4
Q ss_pred hcCChhHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 008708 108 KQGDFNKAEKVLSFMNKKGY---APSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKE 184 (557)
Q Consensus 108 ~~g~~~~A~~~~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 184 (557)
..|++++|+..|+++.+... +.+..+|..+...+...|++++|+..|+++.+..+. +..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 34566666666666665421 113455666666666666666666666666655332 55666666666666666666
Q ss_pred HHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008708 185 AEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 185 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 233 (557)
|...|+++++.. +.+..++..++.+|...|++++|...|+++.+.
T Consensus 96 A~~~~~~al~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 96 AYEAFDSVLELD----PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHHHHHHHHC----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC----ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 666666666432 234456666666666666666666666666553
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-13 Score=134.40 Aligned_cols=332 Identities=10% Similarity=0.040 Sum_probs=184.6
Q ss_pred HhhChHHHHHHHhhhcCCCCChHHHHHHHHHhhhccch---HHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC-----
Q 008708 39 EEVGSAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKW---NVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQG----- 110 (557)
Q Consensus 39 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 110 (557)
.+..+|...|+..... +..+.-..++.+. ...++. ++|.+.|+.+.+. ++..+..|...+...|
T Consensus 17 g~~~~A~~~~~~aa~~-g~~~A~~~Lg~~y--~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAEL-GYSEAQVGLADIQ--VGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHH-TCCTGGGTCC-----------------------------------CHHHHHHHHHTC--CCHH
T ss_pred CCHHHHHHHHHHHHHC-CCHHHHHHHHHHH--HccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCc
Confidence 4556777777643333 2222222222222 223444 6777777666533 3455666666555554
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH---
Q 008708 111 DFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKN---AEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKE--- 184 (557)
Q Consensus 111 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~--- 184 (557)
++++|...|++..+.|. ..++..|...|...+..++ +.+.+......| ++.....+...|...+.+++
T Consensus 89 ~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 66778888888777652 2366667777766554333 344444443333 23455566666666664443
Q ss_pred -HHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHH--HHhcc----cCCHHH
Q 008708 185 -AEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG---GYEKARKLFALMAERGVQQSTVTYN--SLMSF----ETNYKE 254 (557)
Q Consensus 185 -A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~--~ll~~----~~~~~~ 254 (557)
+..++.... .+ .| ..+..|..+|...| +.++|+..|++..+.|.......++ .+... .+++++
T Consensus 163 ~a~~~~~~a~----~~-~~--~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 163 DVERICKAAL----NT-TD--ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp HHHHHHHHHT----TT-CT--THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred HHHHHHHHHH----cC-CH--HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 333444332 12 22 26777777777777 7778888888877776544432122 22221 257778
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-----CHHHHH
Q 008708 255 VSKIYDQMQRAGLQPDVVSYALLINA-Y--GKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG-----MVDQAR 326 (557)
Q Consensus 255 a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~ 326 (557)
|...|+... . -+...+..+... | ...+++++|+.+|++..+.| +...+..|...|. .| ++++|.
T Consensus 236 A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 236 AQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 888887776 3 245566666665 3 45778888888888877755 5666667777666 44 788888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 008708 327 TVFKCMRRDRCSPDICSYTTMLSAYVN----ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEI 398 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~ 398 (557)
.+|++.. . -++..+..+...|.. ..++++|...|++..+.| . ......|...|.. ..+.++|..+
T Consensus 308 ~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-~--~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 308 AHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG-Q--NSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp HHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT-C--TTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred HHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC-h--HHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 8887766 3 366666777766665 337888888888877765 2 2344455555553 3467777777
Q ss_pred HHHHHHCC
Q 008708 399 YDKMRVNG 406 (557)
Q Consensus 399 ~~~m~~~~ 406 (557)
|+...+.|
T Consensus 381 ~~~A~~~g 388 (452)
T 3e4b_A 381 SQLAKAQD 388 (452)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHCC
Confidence 77777665
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.6e-13 Score=117.90 Aligned_cols=202 Identities=12% Similarity=0.040 Sum_probs=174.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 349 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 349 (557)
+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++.... +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 46678889999999999999999999998864 4567889999999999999999999999998754 447788999999
Q ss_pred HHHHc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 008708 350 AYVNA-SDMEGAEKFFRRLKQDGFVP-NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDF 427 (557)
Q Consensus 350 ~~~~~-g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 427 (557)
.+... |++++|...++++.+.+..| +...+..++.++...|++++|...++++.+.. +.+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 99999999999998832233 36788999999999999999999999998753 44588899999999999999
Q ss_pred hHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC
Q 008708 428 DSAVVWYKEMESCGFP-PDQKAKNILLSLAKTADERNEANELLGNFNHP 475 (557)
Q Consensus 428 ~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (557)
++|..+++++.+.. + .+...+..+...+...|+.++|..+++.+...
T Consensus 164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999998743 4 56677888888889999999999999887643
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-13 Score=124.71 Aligned_cols=205 Identities=11% Similarity=0.067 Sum_probs=162.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 269 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTML 348 (557)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 348 (557)
.....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345667888889999999999999999998753 4578889999999999999999999999998764 44788899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChh
Q 008708 349 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFD 428 (557)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 428 (557)
..+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998865 6678899999999999999999999999998753 456889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCC
Q 008708 429 SAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNE 478 (557)
Q Consensus 429 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (557)
+|...++++.+.. +.+..++..+..++...|++++|...++++.+..+.
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 9999999998853 456788999999999999999999999998755443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-13 Score=135.57 Aligned_cols=281 Identities=15% Similarity=0.080 Sum_probs=181.0
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-
Q 008708 94 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS----VVSHTALMEAYGRGGRYKNAEAIFRRMQSS----GPRP- 164 (557)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~- 164 (557)
.....+..+...+.+.|++++|...|+++.+.+ +.+ ..+|..+...+...|++++|...+++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 445667788899999999999999999998874 223 357888999999999999999999886542 2121
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCC--CCCHHHHHHHHHHHHHcCC--------------------HHH
Q 008708 165 SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPL--KPDQKMFHMMIYMYKKAGG--------------------YEK 222 (557)
Q Consensus 165 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~--------------------~~~ 222 (557)
...++..+...+...|++++|...++++++...... .....++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 245677888899999999999999998875321100 1113477888888999998 777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008708 223 ARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQP-DVVSYALLINAYGKARREEEALAVFEEMLDAG 301 (557)
Q Consensus 223 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 301 (557)
|...+++.... +.. .+..+ ...++..+...|...|++++|...+++..+..
T Consensus 166 A~~~~~~al~~-------------------------~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 166 AVDFYEENLSL-------------------------VTA---LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHHHHHHH-------------------------HHH---TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------------------------HHh---ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 77766555431 111 11111 23467778888888899999988888876421
Q ss_pred C-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008708 302 V-RPT----HKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SPD----ICSYTTMLSAYVNASDMEGAEKFFRRLKQDG 371 (557)
Q Consensus 302 ~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 371 (557)
. .++ ..++..+...|...|++++|...+++...... .++ ..++..+...|...|++++|...+++.....
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 111 22566667777777777777777776553210 001 3345555666666666666666666554321
Q ss_pred C-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 372 F-VPN----VITYGTLIKGYAKVNNLEKMMEIYDKMR 403 (557)
Q Consensus 372 ~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (557)
. .++ ..++..+...|...|++++|...+++..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 011 3345555555556666666666655544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-13 Score=132.34 Aligned_cols=307 Identities=15% Similarity=0.115 Sum_probs=225.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccC-CC-CC
Q 008708 128 APSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS----ALTYQIILKLFVEANKFKEAEEVFMTLLDEEK-SP-LK 201 (557)
Q Consensus 128 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~ 201 (557)
.+....+......+...|++++|+..|++....++. + ..++..+...+...|++++|...+++++.... .+ .+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 456777888889999999999999999999886443 3 35778888999999999999999998765311 11 11
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 008708 202 PDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAY 281 (557)
Q Consensus 202 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (557)
....++..+...|...|++++|...+++..+. ..... .......++..+...|
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------------------~~~~~--~~~~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI-------------------------SRELN--DKVGEARALYNLGNVY 137 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HHHHT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------------HHhcc--cccchHHHHHHHHHHH
Confidence 22457888899999999999999999877653 11100 0001244677888889
Q ss_pred HhcCC--------------------HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008708 282 GKARR--------------------EEEALAVFEEMLDA----GVRP-THKAYNILLDAFAISGMVDQARTVFKCMRRDR 336 (557)
Q Consensus 282 ~~~g~--------------------~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 336 (557)
...|+ +++|...+.+..+. +..+ ...++..+...|...|++++|...+++..+..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 99999 99999998887542 1111 23468888999999999999999999876431
Q ss_pred C-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-
Q 008708 337 C-SPD----ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF-VPN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVN- 405 (557)
Q Consensus 337 ~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~- 405 (557)
. .++ ..++..+...|...|++++|...+++...... .++ ..++..+...|...|++++|...+++..+.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 112 34788889999999999999999998865310 111 567889999999999999999999998753
Q ss_pred ---CCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHhhcCCH
Q 008708 406 ---GIKP-NQTIFTTIMDAYGKNKDFDSAVVWYKEMES----CGFPPD-QKAKNILLSLAKTADER 462 (557)
Q Consensus 406 ---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~~ 462 (557)
+-.+ ...++..+..+|...|++++|...+++..+ .+..+. ..++..+...+...|+.
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 1111 156788889999999999999999998865 221221 24566666777766655
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.2e-13 Score=130.13 Aligned_cols=284 Identities=12% Similarity=0.077 Sum_probs=176.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhC----C-CCCCHH
Q 008708 97 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSV----VSHTALMEAYGRGGRYKNAEAIFRRMQSS----G-PRPSAL 167 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~ 167 (557)
..+..+...+...|++++|...|+++.+.+ +.+. .+|..+...|...|++++|+..+++.... + ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 345567888999999999999999998874 2233 57888999999999999999999987653 1 122346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhccCC--CCCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHH
Q 008708 168 TYQIILKLFVEANKFKEAEEVFMTLLDEEKS--PLKPDQKMFHMMIYMYKKAGG-----------------YEKARKLFA 228 (557)
Q Consensus 168 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~ 228 (557)
++..+...|...|++++|...++++++.... ..+....++..+...|...|+ +++|+..++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7788888999999999999999988753110 011234578888899999999 677766665
Q ss_pred HHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC--
Q 008708 229 LMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVR-PT-- 305 (557)
Q Consensus 229 ~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~-- 305 (557)
+..+ +..... .......++..+...|...|++++|...+++..+.... ++
T Consensus 208 ~al~-------------------------~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 208 ENLK-------------------------LMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHH-------------------------HHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHH-------------------------HHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 5443 122110 00112346777888888888888888888877542100 11
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHH
Q 008708 306 --HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF-VPNVITYGTL 382 (557)
Q Consensus 306 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l 382 (557)
..++..+...|...|++++|...+++...... ..+. .....++..+
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l 309 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV-------------------------------ELGEREVEAQSCYSL 309 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-------------------------------HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH-------------------------------HcCCHHHHHHHHHHH
Confidence 12445555555555555555555554432100 0000 0012344555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----C-CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 383 IKGYAKVNNLEKMMEIYDKMRVN----G-IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 383 ~~~~~~~g~~~~a~~~~~~m~~~----~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
...|...|++++|...+++..+. + ......++..+..+|...|++++|..++++..+
T Consensus 310 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 310 GNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555666555555555431 1 011134555666666666666666666666655
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-12 Score=128.60 Aligned_cols=286 Identities=12% Similarity=0.075 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhHhccC--CCCCCCH
Q 008708 131 VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA----LTYQIILKLFVEANKFKEAEEVFMTLLDEEK--SPLKPDQ 204 (557)
Q Consensus 131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~ 204 (557)
...+..+...+...|++++|+..|+++.+.++. +. .++..+...+...|++++|...++++++... ...+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345556778889999999999999999886443 33 4788888999999999999999999875310 1112334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 008708 205 KMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA 284 (557)
Q Consensus 205 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (557)
.++..+...|...|++++|...+++..+. +.... .......++..+...|...
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------------~~~~~--~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTL-------------------------ARQLG--DRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HHHHT--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------------------HHHhh--chHHHHHHHHHHHHHHHHc
Confidence 67888999999999999999999877652 11110 0011244677788888888
Q ss_pred CC-----------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 285 RR-----------------EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 347 (557)
Q Consensus 285 g~-----------------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 347 (557)
|+ +++|+..+.+..+. ..... .......++..+
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~----------------------------~~~~~--~~~~~~~~~~~l 229 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL----------------------------MRDLG--DRGAQGRACGNL 229 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHT--CHHHHHHHHHHH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHH----------------------------HHHcC--CHHHHHHHHHHH
Confidence 88 67776666655331 11110 000012244444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHH
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQDGF-VPN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIK-PNQTIFTTI 417 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~l 417 (557)
...|...|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+. +.. ....++..+
T Consensus 230 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 309 (411)
T 4a1s_A 230 GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSL 309 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555555555555433100 012 346777888888889999998888887742 101 125678889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhcCC
Q 008708 418 MDAYGKNKDFDSAVVWYKEMESC----GFPP-DQKAKNILLSLAKTADERNEANELLGNFNH 474 (557)
Q Consensus 418 ~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 474 (557)
..+|...|++++|..++++..+. +..+ ...++..+..++...|++++|...+++..+
T Consensus 310 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 310 GNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999988652 1111 235778888999999999999999988653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5.2e-12 Score=109.06 Aligned_cols=171 Identities=16% Similarity=0.099 Sum_probs=133.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 349 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 349 (557)
+...|..+...|.+.|++++|+..|++.++.. +-+..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56678888888888888888888888887764 4467778888888888888888888888877653 345667777778
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhH
Q 008708 350 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 429 (557)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 429 (557)
.+...++++.|...+.+..... +.+...+..+..+|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 8888888888888888877764 5567788888888888888888888888887753 4457788888888888888888
Q ss_pred HHHHHHHHHhCCCCCCH
Q 008708 430 AVVWYKEMESCGFPPDQ 446 (557)
Q Consensus 430 A~~~~~~m~~~~~~p~~ 446 (557)
|+..|+++++ +.|+.
T Consensus 160 A~~~~~~al~--~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKK 174 (184)
T ss_dssp HHHHHHHHHH--TTHHH
T ss_pred HHHHHHHHHh--CCccC
Confidence 8888888877 34543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.1e-13 Score=126.29 Aligned_cols=277 Identities=14% Similarity=0.115 Sum_probs=154.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccC-CC-CCCCHHHH
Q 008708 134 HTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS----ALTYQIILKLFVEANKFKEAEEVFMTLLDEEK-SP-LKPDQKMF 207 (557)
Q Consensus 134 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~~~~ 207 (557)
+......+...|++++|+..|+++.+..+. + ...+..+...+...|++++|.+.++++++... .+ .+....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344445555666666666666666554322 2 24455556666666666666666666543210 00 11124567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC
Q 008708 208 HMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGL-QPDVVSYALLINAYGKARR 286 (557)
Q Consensus 208 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~ 286 (557)
..+...|...|++++|...+++..+.. . ..+. .....++..+...|...|+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------~---~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDIS-------------------------R---ELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------H---HTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHH-------------------------H---HhcCchHHHHHHHHHHHHHHHcCc
Confidence 778888888888888888887765420 0 0000 0013356677777777777
Q ss_pred --------------------HHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC
Q 008708 287 --------------------EEEALAVFEEMLDA----GVR-PTHKAYNILLDAFAISGMVDQARTVFKCMRRD----RC 337 (557)
Q Consensus 287 --------------------~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~ 337 (557)
+++|...+++.... +.. ....++..+...+...|++++|...+++..+. +.
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 77777777765432 111 11235666677777777777777777766532 10
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC
Q 008708 338 -SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF-VPN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GI 407 (557)
Q Consensus 338 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~ 407 (557)
.....++..+...+...|++++|...+++...... .++ ..++..+...|...|++++|...++++.+. +-
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 00122555666666666777777666666543210 011 345556666666666666666666665532 10
Q ss_pred -CcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 408 -KPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 408 -~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
.....++..+..+|.+.|++++|...++++.+
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 01133455566666666666666666666654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-10 Score=117.61 Aligned_cols=426 Identities=11% Similarity=0.083 Sum_probs=286.2
Q ss_pred hHHHHHHHhhhcCCCCChHHHHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC---hhHHHHHH
Q 008708 43 SAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGD---FNKAEKVL 119 (557)
Q Consensus 43 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~ 119 (557)
+.+..|+.. ....|..-......+..+...+..+.+..+++.+...- +.....|...+..-.+.|. ++.+.++|
T Consensus 50 d~i~~lE~~-l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 50 DVIGKLNDM-IEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CHHHHHHHH-HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHH-HHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 445555533 34455566666666666666678888889998888774 4667778888888888888 99999999
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHHhcCCh--------HHHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHHH---------
Q 008708 120 SFMNKKG-YAPSVVSHTALMEAYGRGGRY--------KNAEAIFRRMQS-SGP-RP-SALTYQIILKLFVE--------- 178 (557)
Q Consensus 120 ~~~~~~g-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~~-~~~~~~~ll~~~~~--------- 178 (557)
++..... .+|++..|..-+....+.+.. +...++|+..+. .|. .+ +...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9988763 137888888888776665543 334467776554 455 44 45677777766542
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHHc--CCC-------
Q 008708 179 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG-------------GYEKARKLFALMAER--GVQ------- 236 (557)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------------~~~~A~~~~~~~~~~--~~~------- 236 (557)
.++.+.+.++|++++.. +...-..+|......-...+ +++.|...+..+... ++.
T Consensus 207 q~~~~~~R~iy~raL~i---P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQ---PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHHHHHHHHHHHHHTTS---CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HhHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 34567788889888732 11122334433332211111 233344444443211 111
Q ss_pred --------C-----C---HHHHHHHhccc---C-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008708 237 --------Q-----S---TVTYNSLMSFE---T-------NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEA 290 (557)
Q Consensus 237 --------~-----~---~~~~~~ll~~~---~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 290 (557)
| + ...|...+... + ..+.+..+|++..... +-+...|...+..+...|+.++|
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTH
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHH
Confidence 1 0 12333333321 1 1234566788887763 33778888888888889999999
Q ss_pred H-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHH
Q 008708 291 L-AVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDR---------CSPD------------ICSYTTML 348 (557)
Q Consensus 291 ~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~~------------~~~~~~li 348 (557)
. .+|++.... ++.+...|...+....+.|+++.|..+|+.+.... ..|+ ...|...+
T Consensus 363 ~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 363 ITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 7 999999875 45667778888888999999999999999987631 0131 23678888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 008708 349 SAYVNASDMEGAEKFFRRLKQD-GFVPNVITYGTLIKGYAKV-NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD 426 (557)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 426 (557)
....+.|+.+.|..+|.++.+. + .+....|...+..-.+. ++.+.|..+|+..++. ++.+...|..++......|+
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNE 519 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCC
Confidence 8888899999999999999876 3 22334444333333344 4589999999999876 45567778888888888999
Q ss_pred hhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCC
Q 008708 427 FDSAVVWYKEMESCGFPP--DQKAKNILLSLAKTADERNEANELLGNFNHPNNE 478 (557)
Q Consensus 427 ~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (557)
.+.|..+|+..+.....+ ....|...+..-.+.|+.+.+..+.+++.+..+.
T Consensus 520 ~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 520 ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999998853222 2357888888889999999999999998754443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-12 Score=123.37 Aligned_cols=281 Identities=15% Similarity=0.075 Sum_probs=205.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CCHH
Q 008708 97 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS----VVSHTALMEAYGRGGRYKNAEAIFRRMQSS----GPR-PSAL 167 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~ 167 (557)
..+......+...|++++|...|+++.+.. +.+ ..++..+...+...|++++|.+.+++.... +.. ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 345567788889999999999999998864 223 467888999999999999999999887543 111 2355
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCC--CCCHHHHHHHHHHHHHcCC--------------------HHHHHH
Q 008708 168 TYQIILKLFVEANKFKEAEEVFMTLLDEEKSPL--KPDQKMFHMMIYMYKKAGG--------------------YEKARK 225 (557)
Q Consensus 168 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~--------------------~~~A~~ 225 (557)
++..+...+...|++++|...+.++++...... .....++..+...|...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 778888899999999999999998875321110 1113477888889999999 777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC
Q 008708 226 LFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGV-RP 304 (557)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~ 304 (557)
.+++.... ..... .......++..+...+...|++++|...+++..+... .+
T Consensus 165 ~~~~a~~~-------------------------~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 165 LYEENLSL-------------------------VTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HHHHHHHH-------------------------HHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-------------------------HHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 77655431 11110 0011234677888899999999999999998764310 11
Q ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----C
Q 008708 305 T----HKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SPD----ICSYTTMLSAYVNASDMEGAEKFFRRLKQD----G 371 (557)
Q Consensus 305 ~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~ 371 (557)
+ ..++..+...+...|++++|...+++...... ..+ ..++..+...|...|++++|...+++.... +
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 1 23778888899999999999999998764310 111 457788889999999999999999987653 1
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 372 -FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 372 -~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
......++..+...|...|++++|...++++.+.
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1112457788999999999999999999998864
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-12 Score=127.16 Aligned_cols=214 Identities=12% Similarity=0.081 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008708 252 YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARRE-EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFK 330 (557)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 330 (557)
++++...++...... +.+...+..+...|...|++ ++|+..|++.++.. +.+...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455566666555442 34788899999999999999 99999999998864 4468899999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CCHH
Q 008708 331 CMRRDRCSPDICSYTTMLSAYVNA---------SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV--------NNLE 393 (557)
Q Consensus 331 ~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 393 (557)
+..+. .|+...+..+...|... |++++|+..|++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99976 46678899999999999 99999999999998875 66788999999999999 9999
Q ss_pred HHHHHHHHHHHCCCC---cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 008708 394 KMMEIYDKMRVNGIK---PNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLG 470 (557)
Q Consensus 394 ~a~~~~~~m~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 470 (557)
+|...|+++.+.. + .+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999853 3 478999999999999999999999999998843 4456678888899999999999987665
Q ss_pred hc
Q 008708 471 NF 472 (557)
Q Consensus 471 ~~ 472 (557)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 44
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.5e-12 Score=122.94 Aligned_cols=302 Identities=11% Similarity=0.014 Sum_probs=162.4
Q ss_pred hhhccchHHHHHHHHHHHhcCC-CCCCH--hhHHHHHHH--HHhcCChhHHH-----------HHHHHHHhCCCCCCHHH
Q 008708 70 LKQLKKWNVVSEVLEWLRIQSW-WDFNE--MDFLMLITA--YGKQGDFNKAE-----------KVLSFMNKKGYAPSVVS 133 (557)
Q Consensus 70 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~~g~~~~~~~ 133 (557)
....++++.|.++.+.+.+.-. .+.+. ..|..++.. ..-.+.++.+. +.++.+... +++...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchh
Confidence 3445677778877777755321 11222 223333222 11223444444 666665442 112122
Q ss_pred H------HHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCC--
Q 008708 134 H------TALMEAYGRGGRYKNAEAIFRRMQSS----GPRP-SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPL-- 200 (557)
Q Consensus 134 ~------~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 200 (557)
+ ......+...|++++|+..|++.... +..+ ...++..+...+...|++++|...+.++++......
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 2 22556677788888888888887653 1111 235677777888888888888888888775321110
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 008708 201 -KPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQ-PDVVSYALLI 278 (557)
Q Consensus 201 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li 278 (557)
+....+++.+..+|...|++++|...|++..+. ... .+.. ....++..+.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------------------~~~---~~~~~~~~~~~~~lg 231 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSM-------------------------AEA---EKQPQLMGRTLYNIG 231 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HHH---TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-------------------------HHH---cCChHHHHHHHHHHH
Confidence 112356777788888888888888888766542 110 0000 0123566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 008708 279 NAYGKARREEEALAVFEEMLDA----GV-RPTHKAYNILLDAFAISGMVDQARTVFKCMRRD----RCSPDICSYTTMLS 349 (557)
Q Consensus 279 ~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~ 349 (557)
.+|...|++++|+..+++..+. +. +....++..+..+|.+.|++++|...+++.... +.+.....+..+..
T Consensus 232 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ 311 (383)
T 3ulq_A 232 LCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKS 311 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7788888888888888777652 22 223456666777777777777777777665432 10111122334444
Q ss_pred HHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 350 AYVNASD---MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 403 (557)
Q Consensus 350 ~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (557)
.+...|+ +++|+.++++.. ..+.....+..+...|...|++++|...|++..
T Consensus 312 ~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 312 LYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444555 444444443321 001112234444555555555555555555443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.47 E-value=8.4e-12 Score=107.74 Aligned_cols=170 Identities=12% Similarity=0.085 Sum_probs=150.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 304 PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLI 383 (557)
Q Consensus 304 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 383 (557)
.+..+|..+...|...|++++|+..|++..+.. +.+..++..+..+|...|++++|...+....... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 367789999999999999999999999998764 4578899999999999999999999999998865 66788888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHH
Q 008708 384 KGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERN 463 (557)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 463 (557)
..+...++++.|...+.+..+.. +.+...+..+..++.+.|++++|+..|++.++.. +.+...+..+..++.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 99999999999999999998753 4568889999999999999999999999999843 446788999999999999999
Q ss_pred HHHHHHHhcCCCCC
Q 008708 464 EANELLGNFNHPNN 477 (557)
Q Consensus 464 ~a~~~~~~~~~~~~ 477 (557)
+|...+++..+.++
T Consensus 159 ~A~~~~~~al~~~p 172 (184)
T 3vtx_A 159 EAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHhCCc
Confidence 99999999876554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-11 Score=120.38 Aligned_cols=237 Identities=10% Similarity=0.003 Sum_probs=137.8
Q ss_pred HHhcCChhHHHHHHHHHHhC--CCCCC--HHHHHHHHHH--HHhcCChHHHH-----------HHHHHHHhCCCCCC---
Q 008708 106 YGKQGDFNKAEKVLSFMNKK--GYAPS--VVSHTALMEA--YGRGGRYKNAE-----------AIFRRMQSSGPRPS--- 165 (557)
Q Consensus 106 ~~~~g~~~~A~~~~~~~~~~--g~~~~--~~~~~~li~~--~~~~g~~~~A~-----------~~~~~m~~~~~~~~--- 165 (557)
+.+.+++++|..+++++.+. .++.+ ...|-.++.. ....+.++.+. +.++.+.......+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45689999999999998653 22233 3333444332 22233444444 66666544211111
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 008708 166 -ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKS-PLKP-DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTY 242 (557)
Q Consensus 166 -~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 242 (557)
...+......+...|++++|...|+++++.... +.++ ...++..+..+|...|++++|...+.+..+.
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------- 172 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI--------- 172 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------
Confidence 111223556778899999999999999853111 1111 2467888999999999999999999877653
Q ss_pred HHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHH
Q 008708 243 NSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGV-RPT----HKAYNILLDAFA 317 (557)
Q Consensus 243 ~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~ 317 (557)
+...... ......+++.+...|...|++++|...|++..+... .++ ..++..+..+|.
T Consensus 173 ----------------~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 235 (383)
T 3ulq_A 173 ----------------YKEHEAY-NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN 235 (383)
T ss_dssp ----------------HHTCSTT-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------------HHhCccc-hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 1110000 001235677888889999999999999888764310 011 125556666666
Q ss_pred HcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 318 ISGMVDQARTVFKCMRRD----RC-SPDICSYTTMLSAYVNASDMEGAEKFFRRLK 368 (557)
Q Consensus 318 ~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (557)
..|++++|...+++..+. +. +....++..+...|...|++++|...+++..
T Consensus 236 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 236 SQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666666666655541 11 2223444455555555555555555555443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-11 Score=113.80 Aligned_cols=220 Identities=10% Similarity=0.075 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008708 253 KEVSKIYDQMQRAGLQPDVVSYALLINAYG-------KARRE-------EEALAVFEEMLDAGVRPTHKAYNILLDAFAI 318 (557)
Q Consensus 253 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 318 (557)
++|..+|++..... +-+...|..++..+. +.|++ ++|..+|++.++.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 34555555555542 235666777666664 34775 8888888888873123456688888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHH
Q 008708 319 SGMVDQARTVFKCMRRDRCSP-DIC-SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA-KVNNLEKM 395 (557)
Q Consensus 319 ~g~~~~A~~~~~~~~~~~~~~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a 395 (557)
.|++++|..+|++..+. .| +.. .|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 89999999999988874 33 333 78888888888899999999999888764 445555554443322 26889999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 396 MEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG-FPP--DQKAKNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 396 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
..+|+++++.. +.+...|..++..+.+.|++++|..+|+++++.. ++| ....|..++....+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998888652 3457888888888888899999999999988852 455 3567888888888889999999888887
Q ss_pred CCCCC
Q 008708 473 NHPNN 477 (557)
Q Consensus 473 ~~~~~ 477 (557)
.+..+
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 64433
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-10 Score=108.16 Aligned_cols=217 Identities=12% Similarity=0.101 Sum_probs=165.5
Q ss_pred HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHhcc
Q 008708 183 KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK-------AGGY-------EKARKLFALMAERGVQQSTVTYNSLMSF 248 (557)
Q Consensus 183 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 248 (557)
++|..+|++++... +.+...|..++..+.. .|++ ++|..+|++..+.
T Consensus 33 ~~a~~~~~~al~~~----p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~--------------- 93 (308)
T 2ond_A 33 KRVMFAYEQCLLVL----GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST--------------- 93 (308)
T ss_dssp HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH---------------
Confidence 57777888887532 5567777777776654 3553 4555555444431
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHHcCCHHHHH
Q 008708 249 ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT-HK-AYNILLDAFAISGMVDQAR 326 (557)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~li~~~~~~g~~~~A~ 326 (557)
.. +-+...|..++..+.+.|++++|..+|+++++. .|+ .. +|..++..+.+.|++++|.
T Consensus 94 ----------------~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~ 154 (308)
T 2ond_A 94 ----------------LL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp ----------------TT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred ----------------hC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHH
Confidence 11 225668888999999999999999999999874 443 33 7888999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 327 TVFKCMRRDRCSPDICSYTTMLSAYV-NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
.+|++..+.. +++...|...+.... ..|++++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..+.
T Consensus 155 ~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 155 MIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999998764 334455554443322 3699999999999988763 557888999999999999999999999999986
Q ss_pred C-CCc--CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 406 G-IKP--NQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 406 ~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
. ++| ....|..++..+.+.|+.+.|..+++++.+
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 454 467888899999999999999999999987
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-12 Score=123.90 Aligned_cols=179 Identities=18% Similarity=0.230 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccC----CC
Q 008708 131 VVSHTALMEAYGRGGRYKNAEAIFRRMQSS-------GPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEK----SP 199 (557)
Q Consensus 131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----~~ 199 (557)
..++..+...+...|++++|+.+++++.+. .......++..+...+...|++++|...++++++... ..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 455666666677777777777776666552 1222345666677777777777777777777764210 11
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 008708 200 LKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLIN 279 (557)
Q Consensus 200 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 279 (557)
.+....++..+...|...|++++|...|+++.+. .+.......+.....+..+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-------------------------~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI-------------------------REKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-------------------------HHHHHCTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-------------------------HHHhcCCCChHHHHHHHHHHH
Confidence 2234567888999999999999999999887653 111111111123456788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 280 AYGKARREEEALAVFEEMLDA------GVRP-THKAYNILLDAFAISGMVDQARTVFKCMRR 334 (557)
Q Consensus 280 ~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 334 (557)
.|...|++++|+.+++++.+. +..| ...++..+..+|...|++++|...++++.+
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999988764 1122 234677788888888888888888888764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-11 Score=123.66 Aligned_cols=212 Identities=12% Similarity=0.024 Sum_probs=144.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008708 147 YKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF-KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARK 225 (557)
Q Consensus 147 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 225 (557)
+++++..++...... +.+...+..+...+...|++ ++|++.|+++++.. +.+..+|..+..+|...|++++|..
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE----PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 566666666655542 34777788888888888888 88888888887642 3457788888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHH
Q 008708 226 LFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKA---------RREEEALAVFEE 296 (557)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~ 296 (557)
.|++..+. .|+...+..+...|... |++++|+..|++
T Consensus 159 ~~~~al~~----------------------------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~ 204 (474)
T 4abn_A 159 CFSGALTH----------------------------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKL 204 (474)
T ss_dssp HHHHHHTT----------------------------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhh----------------------------------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHH
Confidence 88887764 34556677777777777 888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008708 297 MLDAGVRPTHKAYNILLDAFAIS--------GMVDQARTVFKCMRRDRCS--PDICSYTTMLSAYVNASDMEGAEKFFRR 366 (557)
Q Consensus 297 ~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (557)
..+.. +.+...|..+..+|... |++++|...|++..+.... .+...|..+..+|...|++++|...|++
T Consensus 205 al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 205 AVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 87753 34566777777777776 6677777777666654210 3555666666666666666666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 367 LKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIY 399 (557)
Q Consensus 367 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 399 (557)
..+.. +.+...+..+..++...|++++|.+.+
T Consensus 284 al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 284 AAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65543 344555555666666666555555433
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=5.1e-10 Score=108.50 Aligned_cols=276 Identities=9% Similarity=0.003 Sum_probs=176.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCC--CHHHHHH
Q 008708 136 ALMEAYGRGGRYKNAEAIFRRMQSSGPRPSAL----TYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKP--DQKMFHM 209 (557)
Q Consensus 136 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~ 209 (557)
.....+...|++++|...+++........+.. ++..+...+...|++++|...+++.+........+ ...++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445556777777777777766654333322 44555666777788888888887776431111011 1234567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHhcCC
Q 008708 210 MIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQ--P-DVVSYALLINAYGKARR 286 (557)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 286 (557)
+...+...|++++|...+++.... . ...+.. | ....+..+...+...|+
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~-------------------------~---~~~~~~~~~~~~~~~~~la~~~~~~g~ 150 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQL-------------------------I---NEQHLEQLPMHEFLVRIRAQLLWAWAR 150 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-------------------------H---HHTTCTTSTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH-------------------------H---HHhccccCcHHHHHHHHHHHHHHHhcC
Confidence 788888999999999998776642 1 111111 2 23455667778888888
Q ss_pred HHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-C-HHHHH----HHHHHHHHcCC
Q 008708 287 EEEALAVFEEMLDAGVR----PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP-D-ICSYT----TMLSAYVNASD 356 (557)
Q Consensus 287 ~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~----~li~~~~~~g~ 356 (557)
+++|...+++....... ....++..+...+...|++++|...+++.......+ . ..... ..+..+...|+
T Consensus 151 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 230 (373)
T 1hz4_A 151 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 230 (373)
T ss_dssp HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC
Confidence 88888888887654221 123567777788888888888888888775431111 1 11111 23344678888
Q ss_pred HHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcCH-HHHHHHHHHHHhcCChh
Q 008708 357 MEGAEKFFRRLKQDGFVP---NVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPNQ-TIFTTIMDAYGKNKDFD 428 (557)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~ 428 (557)
+++|...+++.......+ ....+..+...+...|++++|...+++.... +..++. ..+..+..++...|+.+
T Consensus 231 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (373)
T 1hz4_A 231 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 310 (373)
T ss_dssp HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHH
Confidence 988888888776543111 1335667778888889999998888887642 222222 35666777888889999
Q ss_pred HHHHHHHHHHh
Q 008708 429 SAVVWYKEMES 439 (557)
Q Consensus 429 ~A~~~~~~m~~ 439 (557)
+|...+++...
T Consensus 311 ~A~~~l~~al~ 321 (373)
T 1hz4_A 311 DAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888888764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-12 Score=120.03 Aligned_cols=247 Identities=14% Similarity=0.136 Sum_probs=166.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 008708 201 KPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINA 280 (557)
Q Consensus 201 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 280 (557)
+....++..+...+...|++++|..+|+++.+. +........+....++..+...
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-------------------------~~~~~~~~~~~~~~~~~~la~~ 78 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALED-------------------------LEKTSGHDHPDVATMLNILALV 78 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HHHHHCSSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------------HHHHcCCCCHHHHHHHHHHHHH
Confidence 344577888999999999999999999887652 1111111112234567788888
Q ss_pred HHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-CCCHHHHHH
Q 008708 281 YGKARREEEALAVFEEMLDA------GV-RPTHKAYNILLDAFAISGMVDQARTVFKCMRRD------RC-SPDICSYTT 346 (557)
Q Consensus 281 ~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~ 346 (557)
|...|++++|...++++... +- +....++..+...|...|++++|...+++..+. +. +....++..
T Consensus 79 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 99999999999999888653 21 223457788888899999999999999887753 21 223456788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCcC--
Q 008708 347 MLSAYVNASDMEGAEKFFRRLKQD------G-FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN-------GIKPN-- 410 (557)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~------~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------~~~p~-- 410 (557)
+...+...|++++|..+++++... + .+....++..+..+|...|++++|...++++.+. ...+.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 888999999999999999988764 1 1223457888899999999999999999988752 11111
Q ss_pred -----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 411 -----QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 411 -----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
...+..+...+...+.+.+|...++...... +....++..+..+|.+.|++++|..++++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1223333344455666777777777776521 2234678888899999999999999998765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-10 Score=111.81 Aligned_cols=237 Identities=11% Similarity=0.075 Sum_probs=158.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhccCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc
Q 008708 171 IILKLFVEANKFKEAEEVFMTLLDEEKSP--LKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF 248 (557)
Q Consensus 171 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 248 (557)
.....+...|++++|...|+++++..... .+....++..+..+|...|+++.|...+.+..+.
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~--------------- 170 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI--------------- 170 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH---------------
Confidence 34556778999999999999987532111 0112457888999999999999999999877652
Q ss_pred cCCHHHHHHHHHHHHHCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCC
Q 008708 249 ETNYKEVSKIYDQMQRAGL-Q-PDVVSYALLINAYGKARREEEALAVFEEMLDA----GVRP-THKAYNILLDAFAISGM 321 (557)
Q Consensus 249 ~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~ 321 (557)
+.. .+. . ....+++.+..+|...|++++|...|.+..+. +..+ ...++..+..+|...|+
T Consensus 171 ----------~~~---~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 237 (378)
T 3q15_A 171 ----------YQN---HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD 237 (378)
T ss_dssp ----------HHT---STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ----------HHh---CCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 110 000 0 12456788899999999999999999887652 1111 12467778888888888
Q ss_pred HHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCC-
Q 008708 322 VDQARTVFKCMRR-----DRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD----GFVPNVITYGTLIKGYAKVNN- 391 (557)
Q Consensus 322 ~~~A~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~g~- 391 (557)
+++|...|++... .. +....++..+...|.+.|++++|...+++..+. +-+.....+..+...|...++
T Consensus 238 ~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~ 316 (378)
T 3q15_A 238 DQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDE 316 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCH
T ss_pred HHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 8888888888765 32 223566777777888888888888888877653 112223345555566666666
Q ss_pred --HHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 392 --LEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 392 --~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+.+|+.++++. +..|+ ...+..+...|...|++++|...++++.+
T Consensus 317 ~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 317 RKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666665552 22222 34556677777777888888777777654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=8e-10 Score=107.11 Aligned_cols=278 Identities=10% Similarity=0.040 Sum_probs=195.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSV----VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-PS----ALTY 169 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~ 169 (557)
...+...+...|++++|...+++........+. .+++.+...+...|++++|...+++....... .+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 345566777889999999999998776422222 25677778888999999999999887653211 12 2345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhccCC-CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008708 170 QIILKLFVEANKFKEAEEVFMTLLDEEKS-PLK--P-DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSL 245 (557)
Q Consensus 170 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 245 (557)
..+...+...|++++|...+++.++.... +.. | ...++..+...+...|++++|...+++........
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------- 168 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY-------- 168 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS--------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc--------
Confidence 66778889999999999999988763211 111 2 23566778889999999999999998887642111
Q ss_pred hcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHHc
Q 008708 246 MSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT--HKAYN----ILLDAFAIS 319 (557)
Q Consensus 246 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~ 319 (557)
+......++..+...+...|++++|...+++.......++ ..... ..+..+...
T Consensus 169 --------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (373)
T 1hz4_A 169 --------------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 228 (373)
T ss_dssp --------------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred --------------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHC
Confidence 1111235677788888999999999999998865321111 11111 233457789
Q ss_pred CCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHHcCC
Q 008708 320 GMVDQARTVFKCMRRDRCSP---DICSYTTMLSAYVNASDMEGAEKFFRRLKQD----GFVPNV-ITYGTLIKGYAKVNN 391 (557)
Q Consensus 320 g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~ 391 (557)
|++++|...+++.......+ ....+..+...+...|++++|...+++.... +.+++. ..+..+..++...|+
T Consensus 229 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 308 (373)
T 1hz4_A 229 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 308 (373)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCC
Confidence 99999999998887543221 1335677788899999999999999987542 222223 366777888999999
Q ss_pred HHHHHHHHHHHHH
Q 008708 392 LEKMMEIYDKMRV 404 (557)
Q Consensus 392 ~~~a~~~~~~m~~ 404 (557)
.++|...+++...
T Consensus 309 ~~~A~~~l~~al~ 321 (373)
T 1hz4_A 309 KSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.33 E-value=7.6e-11 Score=101.44 Aligned_cols=162 Identities=17% Similarity=0.112 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 387 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 387 (557)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444455555555555555555554332 2244555555555555556666655555555442 334555555566666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 008708 388 KVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANE 467 (557)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 467 (557)
..|++++|.+.++++.+.. +.+...+..+..++...|++++|..+++++.+.. +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666655432 3345555555566666666666666666655532 3344555556666666666666666
Q ss_pred HHHhcC
Q 008708 468 LLGNFN 473 (557)
Q Consensus 468 ~~~~~~ 473 (557)
.++++.
T Consensus 166 ~~~~~~ 171 (186)
T 3as5_A 166 HFKKAN 171 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-10 Score=99.16 Aligned_cols=165 Identities=15% Similarity=0.126 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 271 VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSA 350 (557)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 350 (557)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3457778888999999999999999887653 4567888999999999999999999999988763 4577889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHH
Q 008708 351 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSA 430 (557)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 430 (557)
+...|++++|.+.++++.... +.+...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998764 6688899999999999999999999999998763 45688899999999999999999
Q ss_pred HHHHHHHHh
Q 008708 431 VVWYKEMES 439 (557)
Q Consensus 431 ~~~~~~m~~ 439 (557)
...++++.+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-10 Score=101.92 Aligned_cols=153 Identities=13% Similarity=-0.003 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 349 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 349 (557)
|+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|+..|++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4566666777777777777777777777665432566666667777777777777777777776553 224556677777
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHH
Q 008708 350 AYVNASDMEGAEKFFRRLKQDGFVPNV-------ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN---QTIFTTIMD 419 (557)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~ 419 (557)
.|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|.+.|+++.+. .|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 7777777777777777776653 3344 44666667777777777777777777654 333 455666666
Q ss_pred HHHhcCC
Q 008708 420 AYGKNKD 426 (557)
Q Consensus 420 ~~~~~g~ 426 (557)
+|...|+
T Consensus 162 ~~~~~~~ 168 (228)
T 4i17_A 162 LFYNNGA 168 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6654443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-10 Score=120.47 Aligned_cols=166 Identities=16% Similarity=0.089 Sum_probs=148.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 349 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 349 (557)
+..+|+.|...|.+.|++++|+..|++.++.. +-+..++..+..+|.+.|++++|+..|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 46789999999999999999999999998864 4467899999999999999999999999998764 446889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhH
Q 008708 350 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 429 (557)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 429 (557)
+|...|++++|++.|++..+.. +-+...|..+..+|...|++++|++.|++.++.. +-+...|..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999999875 5678899999999999999999999999999853 3458899999999999999999
Q ss_pred HHHHHHHHHh
Q 008708 430 AVVWYKEMES 439 (557)
Q Consensus 430 A~~~~~~m~~ 439 (557)
|.+.++++++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-09 Score=106.55 Aligned_cols=234 Identities=9% Similarity=0.008 Sum_probs=173.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 008708 208 HMMIYMYKKAGGYEKARKLFALMAERGVQ-QSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARR 286 (557)
Q Consensus 208 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (557)
...+..+...|++++|+..|++..+.... ++. .....++..+...|...|+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------------~~~a~~~~~lg~~y~~~~~ 156 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD----------------------------IEKAEFHFKVAEAYYHMKQ 156 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH----------------------------HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh----------------------------HHHHHHHHHHHHHHHHcCC
Confidence 33455667788888888888777653100 000 0124567888999999999
Q ss_pred HHHHHHHHHHHHHcC--CC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcC
Q 008708 287 EEEALAVFEEMLDAG--VR---P-THKAYNILLDAFAISGMVDQARTVFKCMRRD----RCS-PDICSYTTMLSAYVNAS 355 (557)
Q Consensus 287 ~~~A~~~~~~~~~~~--~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g 355 (557)
++.|...+.+..+.. .. + ...+++.+..+|...|++++|...|++..+. +.. ....+++.+...|...|
T Consensus 157 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 157 THVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 999999999886531 11 1 2457888999999999999999999987653 111 12357888999999999
Q ss_pred CHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcCHHHHHHHHHHHHhcCC
Q 008708 356 DMEGAEKFFRRLKQ-----DGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPNQTIFTTIMDAYGKNKD 426 (557)
Q Consensus 356 ~~~~A~~~~~~m~~-----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~l~~~~~~~g~ 426 (557)
++++|...+++... .. +....++..+...|.+.|++++|...+++..+. +-+.....+..+...+...|+
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred CHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 99999999999887 43 344778899999999999999999999998863 112224456667777888888
Q ss_pred ---hhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 427 ---FDSAVVWYKEMESCGFPPDQ-KAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 427 ---~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
+.+|+.++++. +..|+. ..+..+...|...|++++|...+++..
T Consensus 316 ~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 316 ERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777777763 233333 466788899999999999999998764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.30 E-value=6.2e-08 Score=99.77 Aligned_cols=430 Identities=13% Similarity=0.063 Sum_probs=278.5
Q ss_pred hchhcchhHHHHHHHHHhhC---hHHHHHHHhhhcCCCCChHHHHHHHHHhhhccc---hHHHHHHHHHHHhcCCCCCCH
Q 008708 23 ADEAGKKNWRRLMNQIEEVG---SAVAVLRSERTRGQPLPKDLVLGTLVRLKQLKK---WNVVSEVLEWLRIQSWWDFNE 96 (557)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~ 96 (557)
..+.|+.+|..++......+ .+..++++. ...-|.........+..-...+. .+.+.++|+........+++.
T Consensus 61 ~np~d~~~W~~yi~~~~~~~~~~~aR~vyEra-L~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv 139 (679)
T 4e6h_A 61 EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKL-HDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDL 139 (679)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCH
T ss_pred HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCH
Confidence 46789999999998876543 456666643 44455566666665555455666 899999999998765334677
Q ss_pred hhHHHHHHHHHhcCCh--------hHHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHHh---------cCChHHHHHHHHH
Q 008708 97 MDFLMLITAYGKQGDF--------NKAEKVLSFMNK-KGY-AP-SVVSHTALMEAYGR---------GGRYKNAEAIFRR 156 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~-~g~-~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~ 156 (557)
..|...+....+.++. +...++|+.... .|. .+ +...|...+..... .++++.+..+|++
T Consensus 140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 8888877777766654 334578887664 354 33 56788888876542 3457889999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHH-------------cCCHHHHHHHHHHhHhcc---CCCCC-----------C-----C-
Q 008708 157 MQSSGPRPSALTYQIILKLFVE-------------ANKFKEAEEVFMTLLDEE---KSPLK-----------P-----D- 203 (557)
Q Consensus 157 m~~~~~~~~~~~~~~ll~~~~~-------------~g~~~~A~~~~~~~~~~~---~~~~~-----------~-----~- 203 (557)
.+..-...-..+|......-.. ..+++.|...+..+.... ...++ | +
T Consensus 220 aL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 220 LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp HTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred HHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 8863111122333222211111 112333444444422110 00011 1 1
Q ss_pred --HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCCHHHHHH---HhcccCCHHHHH-HHHHHHHHCCCCCC
Q 008708 204 --QKMFHMMIYMYKKAG-------GYEKARKLFALMAERGVQQSTVTYNS---LMSFETNYKEVS-KIYDQMQRAGLQPD 270 (557)
Q Consensus 204 --~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~~a~-~~~~~~~~~~~~~~ 270 (557)
...|...+..--..+ ..+.+..+|++++.... .....|-. ++...++.++|. .+|+..... .+.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 234555554333222 13345677888876532 24444433 333467778886 999999875 3446
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 271 VVSYALLINAYGKARREEEALAVFEEMLDAG---------VRPT------------HKAYNILLDAFAISGMVDQARTVF 329 (557)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~A~~~~ 329 (557)
...|...+...-+.|+++.|..+|++++... ..|+ ..+|...+....+.|..+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7778888889999999999999999987641 0132 236778888888899999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 008708 330 KCMRRDRCSPDICSYTTMLSAYVNA-SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIK 408 (557)
Q Consensus 330 ~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 408 (557)
.+..+.........|...+..-.+. ++.+.|.++|+..++. .+.+...+...++.....|+.+.|..+|++.......
T Consensus 458 ~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 458 GKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 9998761122334444333333344 4589999999999886 4557777788888888899999999999999876322
Q ss_pred c--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 008708 409 P--NQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKT 458 (557)
Q Consensus 409 p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 458 (557)
+ ....|...+..-.+.|+.+.+..+.+++.+. .|+......+..-|.-
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYKV 586 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhcC
Confidence 2 3467888888888999999999999999884 4555555555554443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-10 Score=120.57 Aligned_cols=164 Identities=9% Similarity=0.086 Sum_probs=146.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 305 THKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIK 384 (557)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 384 (557)
+..+|+.|..+|.+.|++++|+..|++.++.. +-+..+|+.+..+|.+.|++++|+..|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45689999999999999999999999998764 3468899999999999999999999999999875 567889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHH
Q 008708 385 GYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP-DQKAKNILLSLAKTADERN 463 (557)
Q Consensus 385 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~ 463 (557)
+|...|++++|++.|++.++.. +-+...|..+..+|...|++++|+..|+++++ +.| +...+..+..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999853 34588999999999999999999999999998 455 5678999999999999999
Q ss_pred HHHHHHHhcC
Q 008708 464 EANELLGNFN 473 (557)
Q Consensus 464 ~a~~~~~~~~ 473 (557)
+|.+.++++.
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.27 E-value=4.2e-11 Score=110.90 Aligned_cols=220 Identities=13% Similarity=0.098 Sum_probs=149.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 256 SKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA------GV-RPTHKAYNILLDAFAISGMVDQARTV 328 (557)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~ 328 (557)
+++++.......+....++..+...|...|++++|+..++++.+. +- +....++..+...|...|++++|...
T Consensus 28 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 107 (283)
T 3edt_B 28 LEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPL 107 (283)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 334444443322334667888999999999999999999998754 21 22345788899999999999999999
Q ss_pred HHHHHhC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHHcCCHHH
Q 008708 329 FKCMRRD------R-CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD------G-FVPNVITYGTLIKGYAKVNNLEK 394 (557)
Q Consensus 329 ~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~-~~p~~~~~~~l~~~~~~~g~~~~ 394 (557)
+++.... . .+....++..+...|...|++++|...++++.+. + .+....++..+..+|...|++++
T Consensus 108 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 187 (283)
T 3edt_B 108 CKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQD 187 (283)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 9988754 1 1234567888999999999999999999998764 1 12235678899999999999999
Q ss_pred HHHHHHHHHHC-------CCCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHH--h-CC-CCC-CHHHHHHHHHHHhhcCC
Q 008708 395 MMEIYDKMRVN-------GIKP-NQTIFTTIMDAYGKNKDFDSAVVWYKEME--S-CG-FPP-DQKAKNILLSLAKTADE 461 (557)
Q Consensus 395 a~~~~~~m~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--~-~~-~~p-~~~~~~~l~~~~~~~g~ 461 (557)
|..+++++.+. ...+ ....|..+...+...+....+..+..... + .+ ..| ...++..+..++...|+
T Consensus 188 A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 267 (283)
T 3edt_B 188 AETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK 267 (283)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence 99999998752 1112 22344444444444333333322211111 1 11 112 23567888899999999
Q ss_pred HHHHHHHHHhcCCC
Q 008708 462 RNEANELLGNFNHP 475 (557)
Q Consensus 462 ~~~a~~~~~~~~~~ 475 (557)
+++|..++++..+.
T Consensus 268 ~~~A~~~~~~al~~ 281 (283)
T 3edt_B 268 LEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887643
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=4e-10 Score=100.87 Aligned_cols=170 Identities=11% Similarity=-0.001 Sum_probs=145.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 304 PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLI 383 (557)
Q Consensus 304 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 383 (557)
.++..+......+...|++++|...|++..+...+++...+..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46678888999999999999999999999887644788888889999999999999999999999875 55678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 008708 384 KGYAKVNNLEKMMEIYDKMRVNGIKPNQ-------TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD---QKAKNILL 453 (557)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~ 453 (557)
.+|...|++++|...+++..+.. +.+. ..|..+...+...|++++|+..++++++ +.|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 99999999999999999999753 3345 5688888899999999999999999998 4566 46778888
Q ss_pred HHHhhcCCH---------------------------HHHHHHHHhcCCCCC
Q 008708 454 SLAKTADER---------------------------NEANELLGNFNHPNN 477 (557)
Q Consensus 454 ~~~~~~g~~---------------------------~~a~~~~~~~~~~~~ 477 (557)
.++...|+. ++|...+++..+..+
T Consensus 161 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 888888887 889999988775544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.5e-10 Score=104.70 Aligned_cols=197 Identities=13% Similarity=0.004 Sum_probs=124.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 008708 279 NAYGKARREEEALAVFEEMLDA----GVRPT-HKAYNILLDAFAISGMVDQARTVFKCMRRD----RCSP-DICSYTTML 348 (557)
Q Consensus 279 ~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li 348 (557)
..|...|++++|...|.+..+. |-++. ..+|+.+..+|...|++++|+..+++..+. +-.. -..+++.+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456677777777777766442 21111 346677777777777777777777766542 1000 134677777
Q ss_pred HHHHHc-CCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH------HHHHH
Q 008708 349 SAYVNA-SDMEGAEKFFRRLKQDGFV-PN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQ------TIFTT 416 (557)
Q Consensus 349 ~~~~~~-g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~ 416 (557)
..|... |++++|+..|++..+.... .+ ..++..++..+.+.|++++|+..|++..+....... ..|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 888885 8888888888877653100 01 346778888888888888888888888875322111 25667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHH------HHHHHHHHHh--hcCCHHHHHHHHHhcCCCCC
Q 008708 417 IMDAYGKNKDFDSAVVWYKEMESCGFPPDQK------AKNILLSLAK--TADERNEANELLGNFNHPNN 477 (557)
Q Consensus 417 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~ 477 (557)
+..++...|++++|...+++.++ +.|+.. .+..++.++. ..+++++|...++++...++
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 77788888888888888888876 344321 2344455554 45678888888877655443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-10 Score=107.20 Aligned_cols=158 Identities=13% Similarity=0.091 Sum_probs=122.9
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 008708 282 GKARREEEALAVFEEMLDA-------GVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD------RC-SPDICSYTTM 347 (557)
Q Consensus 282 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 347 (557)
...|++++|+.++++.++. ..+....++..+...|...|++++|...+++..+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4556666666666665441 22234567889999999999999999999988754 21 2245678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCc-CHHH
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQD------G-FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN------GIKP-NQTI 413 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~------~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~ 413 (557)
...|...|++++|...++++... . .+....++..+...|...|++++|..+++++.+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1334667889999999999999999999998864 1122 3567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 414 FTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 414 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+..+..+|...|++++|..+++++.+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88899999999999999999999875
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.5e-09 Score=91.39 Aligned_cols=176 Identities=14% Similarity=0.050 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhC
Q 008708 272 VSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNI----------------LLDAFAISGMVDQARTVFKCMRRD 335 (557)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~~~~~ 335 (557)
..+......+...|++++|+..|++..+.. +.+...+.. +..+|.+.|++++|+..|++..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344455666778888899988888887752 223345555 788888889999999999888776
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCcCHHH
Q 008708 336 RCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN--LEKMMEIYDKMRVNGIKPNQTI 413 (557)
Q Consensus 336 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~ 413 (557)
. +.+...+..+...+...|++++|+..|++..+.. |.+..++..+..+|...|. .+.+...++.... ..|....
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 4 4467888888888899999999999999888865 5677888888888766654 3445555555542 1222333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 414 FTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS 454 (557)
Q Consensus 414 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 454 (557)
+.....++...|++++|+..|+++++ +.|+......+..
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 44455566778889999999998887 5677655544443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.09 E-value=6.8e-09 Score=83.65 Aligned_cols=127 Identities=17% Similarity=0.244 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 310 NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 389 (557)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 389 (557)
..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++...+ +.+...+..++..+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 334444444444444444444444322 2233444444444444445555555444444432 33344444455555555
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 390 NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 390 g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
|++++|.++++++.+.. +.+...+..++.++.+.|++++|...++++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555544431 22344444455555555555555555555443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.09 E-value=4.4e-09 Score=84.81 Aligned_cols=130 Identities=18% Similarity=0.231 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 422 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 422 (557)
.+..+...+...|++++|..+++++.+.. +.+...+..++..+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 56778889999999999999999998764 5678889999999999999999999999998764 456788899999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC
Q 008708 423 KNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHP 475 (557)
Q Consensus 423 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (557)
..|++++|..+++++.+.. +.+...+..+...+...|++++|...++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999998743 456788889999999999999999999887643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.07 E-value=5.7e-08 Score=88.78 Aligned_cols=163 Identities=13% Similarity=0.091 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----CHHHH
Q 008708 271 VVSYALLINAYGKARREEEALAVFEEMLDAGV-RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSP-----DICSY 344 (557)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~ 344 (557)
..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+.
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l 177 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHH
Confidence 33334445555555555555555555544331 123334445555555555555555555555443 23 13333
Q ss_pred HHHHHHH--HHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C----CCcCH
Q 008708 345 TTMLSAY--VNAS--DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN-----G----IKPNQ 411 (557)
Q Consensus 345 ~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~----~~p~~ 411 (557)
..++.++ ...| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+. . -+.++
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~ 255 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP 255 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence 3333332 2222 555666666665443 343222233333555666666666666544421 0 02234
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 412 TIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 412 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
.++..+|......|+ +|.++++++.+
T Consensus 256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 256 TFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 444444444444454 55566666655
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.7e-09 Score=96.00 Aligned_cols=191 Identities=14% Similarity=0.081 Sum_probs=138.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-C-CCHHH
Q 008708 269 PDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT---HKAYNILLDAFAISGMVDQARTVFKCMRRDRC-S-PDICS 343 (557)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~-~~~~~ 343 (557)
.+...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..+|.+.|++++|+..|++..+... . .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356677788888899999999999999988753 223 56788888899999999999999999887532 1 22456
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHH
Q 008708 344 YTTMLSAYVN--------ASDMEGAEKFFRRLKQDGFVPNVITY-----------------GTLIKGYAKVNNLEKMMEI 398 (557)
Q Consensus 344 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~~~~-----------------~~l~~~~~~~g~~~~a~~~ 398 (557)
+..+..++.. .|++++|+..|+++.+.. |.+.... ..+...|.+.|++++|...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 7778888888 899999999999988753 2232333 5668889999999999999
Q ss_pred HHHHHHCCCC-c-CHHHHHHHHHHHHhc----------CChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhhcCCH
Q 008708 399 YDKMRVNGIK-P-NQTIFTTIMDAYGKN----------KDFDSAVVWYKEMESCGFPPDQ----KAKNILLSLAKTADER 462 (557)
Q Consensus 399 ~~~m~~~~~~-p-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~ 462 (557)
|+++++.... + ....+..+..+|... |++++|...++++++. .|+. .....+...+...+++
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHHHHh
Confidence 9999874211 1 245777788888766 8889999999999873 4543 2333344444444444
Q ss_pred H
Q 008708 463 N 463 (557)
Q Consensus 463 ~ 463 (557)
+
T Consensus 249 ~ 249 (261)
T 3qky_A 249 E 249 (261)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-08 Score=94.05 Aligned_cols=211 Identities=10% Similarity=0.078 Sum_probs=148.3
Q ss_pred CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHH
Q 008708 181 KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYD 260 (557)
Q Consensus 181 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~ 260 (557)
++++|...|.++ +..|...|++++|...|.+..+. +.
T Consensus 32 ~~~~A~~~~~~a------------------~~~~~~~g~~~~A~~~~~~al~~-------------------------~~ 68 (292)
T 1qqe_A 32 KFEEAADLCVQA------------------ATIYRLRKELNLAGDSFLKAADY-------------------------QK 68 (292)
T ss_dssp HHHHHHHHHHHH------------------HHHHHHTTCTHHHHHHHHHHHHH-------------------------HH
T ss_pred cHHHHHHHHHHH------------------HHHHHHcCCHHHHHHHHHHHHHH-------------------------HH
Confidence 366666666655 33566778888888877666542 11
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 008708 261 QMQRAGLQP-DVVSYALLINAYGKARREEEALAVFEEMLDAGVR-PT----HKAYNILLDAFAIS-GMVDQARTVFKCMR 333 (557)
Q Consensus 261 ~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~-g~~~~A~~~~~~~~ 333 (557)
+.+.++ ...+|+.+..+|.+.|++++|+..+++.++.... .+ ..++..+..+|... |++++|+..|++..
T Consensus 69 ---~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 69 ---KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp ---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ---HhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 111111 1457888999999999999999999988653110 11 35788899999996 99999999999887
Q ss_pred hCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 334 RDRCS-PD----ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV------ITYGTLIKGYAKVNNLEKMMEIYDKM 402 (557)
Q Consensus 334 ~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (557)
+.... .+ ..+++.+...+...|++++|+..|++..+....... ..|..++.++...|++++|...|++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 53111 01 356888999999999999999999999886422221 25778888999999999999999998
Q ss_pred HHCCCCcCH------HHHHHHHHHHH--hcCChhHHHHHHHHHHh
Q 008708 403 RVNGIKPNQ------TIFTTIMDAYG--KNKDFDSAVVWYKEMES 439 (557)
Q Consensus 403 ~~~~~~p~~------~~~~~l~~~~~--~~g~~~~A~~~~~~m~~ 439 (557)
.+. .|+. ..+..++.++. ..+++++|+..|+.+..
T Consensus 226 l~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 226 QSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred Hhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 753 3332 23445566664 45678888888877653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.3e-09 Score=109.47 Aligned_cols=184 Identities=11% Similarity=-0.022 Sum_probs=138.9
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 282 GKARREEEALAVFEEML--------DAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN 353 (557)
Q Consensus 282 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (557)
...|++++|++.+++.. +. .+.+...+..+..+|...|++++|...|++..+.. +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67788888988888887 33 23456678888888888899999999888887653 3467788888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 008708 354 ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVW 433 (557)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 433 (557)
.|++++|+..|++..+.. +.+...+..+..+|.+.|++++ .+.|+++.+.. +.+...|..+..++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998888764 5567788888888888999988 88888888753 34577888888888899999999998
Q ss_pred HHHHHhCCCCCCH-HHHHHHHHHHhhcCC--------HHHHHHHHHhc
Q 008708 434 YKEMESCGFPPDQ-KAKNILLSLAKTADE--------RNEANELLGNF 472 (557)
Q Consensus 434 ~~~m~~~~~~p~~-~~~~~l~~~~~~~g~--------~~~a~~~~~~~ 472 (557)
|+++++ +.|+. ..+..+..++...++ +++|.+.++.+
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 888876 45654 566666666655443 55555555554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.2e-08 Score=85.80 Aligned_cols=176 Identities=17% Similarity=0.074 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHHHHHHHH
Q 008708 254 EVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG----MVDQARTVF 329 (557)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 329 (557)
+|.+.|+...+.| +...+..+...|...+++++|+.+|++..+.| +...+..|...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455666666653 77788888888989999999999999998865 66777778888877 6 899999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 008708 330 KCMRRDRCSPDICSYTTMLSAYVN----ASDMEGAEKFFRRLKQDGFV-PNVITYGTLIKGYAK----VNNLEKMMEIYD 400 (557)
Q Consensus 330 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~----~g~~~~a~~~~~ 400 (557)
++..+.+ ++..+..+...|.. .+++++|+..|++..+.+.. .+...+..|...|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9988765 67788888888877 78999999999988876511 126788888888888 788999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHHHhCC
Q 008708 401 KMRVNGIKPNQTIFTTIMDAYGKN-K-----DFDSAVVWYKEMESCG 441 (557)
Q Consensus 401 ~m~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~ 441 (557)
+..+. ..+...+..+...|... | ++++|..+|++..+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 98876 23555677777777643 3 8899999999988866
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.01 E-value=2.2e-08 Score=91.56 Aligned_cols=182 Identities=11% Similarity=0.054 Sum_probs=138.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 290 ALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SPDICSYTTMLSAYVNASDMEGAEKFFRRLK 368 (557)
Q Consensus 290 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (557)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 778888877655 56677777888999999999999999999876653 2366788899999999999999999999998
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 369 QDGFVP-----NVITYGTLIKG--YAKVN--NLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 369 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+. .| +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 56 35566666666 33345 899999999999765 45533444444589999999999999997764
Q ss_pred C-----CC----CCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCC
Q 008708 440 C-----GF----PPDQKAKNILLSLAKTADERNEANELLGNFNHPNNE 478 (557)
Q Consensus 440 ~-----~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (557)
. .- +-++.++..++......|+ +|.++++++.+..+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 2 00 3355677677766777787 889999988765553
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.2e-08 Score=90.44 Aligned_cols=189 Identities=13% Similarity=0.102 Sum_probs=117.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHH
Q 008708 129 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS---ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQK 205 (557)
Q Consensus 129 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 205 (557)
.+...+..+...+.+.|++++|+..|+++.+..+. + ...+..+..++...|++++|+..|+++++..+ ..+....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ-IDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC-CCchhHH
Confidence 35666777777778888888888888888775433 3 56677777888888888888888888876421 1122245
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 008708 206 MFHMMIYMYKK--------AGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALL 277 (557)
Q Consensus 206 ~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 277 (557)
++..+..++.. .|++++|+..|+++.+..+... .. ..+...+..+... ....+..+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~-----------~~a~~~~~~~~~~----~~~~~~~l 154 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE-LV-----------DDATQKIRELRAK----LARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT-TH-----------HHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch-hH-----------HHHHHHHHHHHHH----HHHHHHHH
Confidence 67778888888 8999999999998887532211 11 1111111111110 11124556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhC
Q 008708 278 INAYGKARREEEALAVFEEMLDAGVRP--THKAYNILLDAFAIS----------GMVDQARTVFKCMRRD 335 (557)
Q Consensus 278 i~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~ 335 (557)
...|.+.|++++|+..|+++++..... ....+..+..+|... |++++|...|+++.+.
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 667777777777777777776642111 234555666666654 6666666666666654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-06 Score=86.60 Aligned_cols=341 Identities=10% Similarity=0.006 Sum_probs=205.1
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHH----HcCCH
Q 008708 110 GDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR-YKNAEAIFRRMQSS-GPR-PSALTYQIILKLFV----EANKF 182 (557)
Q Consensus 110 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-~~~-~~~~~~~~ll~~~~----~~g~~ 182 (557)
|+++.+..+|++.... .|++..|...+....+.+. .+....+|+..+.. |.. .+...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 6677777777777764 4677777777766666553 34455666665542 322 35566666655433 23566
Q ss_pred HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhccc
Q 008708 183 KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYK-------------KAGGYEKARKLFALMAERGVQQSTVTYNSLMSFE 249 (557)
Q Consensus 183 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 249 (557)
+.+.++|++++.. +...-...|......-. ..+.+..|..+++.+...-...+...|...+...
T Consensus 106 ~~vR~iy~rAL~~---P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E 182 (493)
T 2uy1_A 106 EKIRNGYMRALQT---PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLE 182 (493)
T ss_dssp HHHHHHHHHHHTS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 7777777777742 11111122222211110 1123334454554443210011333455444421
Q ss_pred -CC---------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 008708 250 -TN---------YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAIS 319 (557)
Q Consensus 250 -~~---------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 319 (557)
++ ...+..+|+++.... +.+...|...+..+.+.|+.+.|..++++.... +.+...+. .|...
T Consensus 183 ~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~ 255 (493)
T 2uy1_A 183 MENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLV 255 (493)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHH
T ss_pred hcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhh
Confidence 11 345678899888764 346788888888899999999999999999987 33433332 22222
Q ss_pred CCHHHHHHHHHHHHhCC---------C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 320 GMVDQARTVFKCMRRDR---------C---SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 387 (557)
Q Consensus 320 g~~~~A~~~~~~~~~~~---------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 387 (557)
...++. ++.+.+.- . ......|...+..+.+.++.+.|..+|.++ ... +.+...|...+..-.
T Consensus 256 ~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 256 MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 111111 22222110 0 011245666777777788999999999999 322 234555543333333
Q ss_pred HcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 008708 388 KVN-NLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEAN 466 (557)
Q Consensus 388 ~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 466 (557)
..+ +.+.|..+|+...+. .+-++..+...++...+.|+.+.|..+|+.+. .....|...+..-...|+.+.+.
T Consensus 331 ~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHH
Confidence 334 699999999999875 23346667778888888999999999999973 24677888888888889999999
Q ss_pred HHHHhcC
Q 008708 467 ELLGNFN 473 (557)
Q Consensus 467 ~~~~~~~ 473 (557)
.++++..
T Consensus 405 ~v~~~~~ 411 (493)
T 2uy1_A 405 ELVDQKM 411 (493)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887754
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-08 Score=88.42 Aligned_cols=165 Identities=15% Similarity=0.042 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhC
Q 008708 307 KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTT----------------MLSAYVNASDMEGAEKFFRRLKQD 370 (557)
Q Consensus 307 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~ 370 (557)
..+......+...|++++|+..|++..+.. +.+...|.. +..+|.+.|++++|+..|++..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344455667789999999999999998753 224456666 889999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCH--
Q 008708 371 GFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD--FDSAVVWYKEMESCGFPPDQ-- 446 (557)
Q Consensus 371 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~-- 446 (557)
. |.+...+..+..++...|++++|...|+++++.. +.+...|..+..+|...|+ .+.+...++... .|++
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 157 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQ 157 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchh
Confidence 5 6688999999999999999999999999999863 4468889999888866654 345555665553 3444
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCC
Q 008708 447 KAKNILLSLAKTADERNEANELLGNFNHPNNE 478 (557)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (557)
..+.....++...|++++|...+++..+..+.
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 34455566777889999999999999877664
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.5e-09 Score=88.42 Aligned_cols=143 Identities=13% Similarity=0.056 Sum_probs=90.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 008708 314 DAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLE 393 (557)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 393 (557)
.++...|++++|+..++...... +.+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 34445566777777776665431 1123345566677777777777777777777654 556777777777777777777
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCC-CHHHHHHHHHHHhhcCC
Q 008708 394 KMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVW-YKEMESCGFPP-DQKAKNILLSLAKTADE 461 (557)
Q Consensus 394 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~~~~p-~~~~~~~l~~~~~~~g~ 461 (557)
+|...|++..+.. +-+...|..+..+|.+.|++++|... ++++++ +.| ++.++......+...|+
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 7777777777642 33466777777777777777665543 466666 334 44556555556655553
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=8e-08 Score=84.58 Aligned_cols=179 Identities=12% Similarity=0.080 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHH
Q 008708 288 EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS----DMEGAEKF 363 (557)
Q Consensus 288 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~ 363 (557)
.+|+..|++..+.| ++..+..+...|...+++++|..+|++..+.+ ++..+..+...|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35778888888764 78888899999999999999999999999875 77888888888887 6 89999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHh----cCChhHHHHHH
Q 008708 364 FRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNGIK-PNQTIFTTIMDAYGK----NKDFDSAVVWY 434 (557)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~ 434 (557)
|++..+.| +...+..|...|.. .+++++|.++|++..+.+.. .+...+..|...|.. .+++++|+.+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998765 67788888888887 88999999999999986521 127788888888888 88999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhc-C-----CHHHHHHHHHhcCCCCCC
Q 008708 435 KEMESCGFPPDQKAKNILLSLAKTA-D-----ERNEANELLGNFNHPNNE 478 (557)
Q Consensus 435 ~~m~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~~ 478 (557)
++..+. +++...+..|...|... | +.++|...+++..+.+..
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 999985 34556777777777653 3 899999999987655543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=4e-08 Score=91.09 Aligned_cols=167 Identities=8% Similarity=0.007 Sum_probs=124.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-H
Q 008708 268 QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYT-T 346 (557)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ 346 (557)
+.+...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++... .|+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3345667778888888899999999999887763 446678888888888899999999888887665 34443322 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcC
Q 008708 347 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIK-PNQTIFTTIMDAYGKNK 425 (557)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g 425 (557)
....+...++.+.|...+++..... |.+...+..+...+...|++++|...|.++.+.... .+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2334667777788888888887764 667788888888888888888888888888865311 12567888888888888
Q ss_pred ChhHHHHHHHHHH
Q 008708 426 DFDSAVVWYKEME 438 (557)
Q Consensus 426 ~~~~A~~~~~~m~ 438 (557)
+.++|...+++.+
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888888887764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=5.1e-09 Score=86.59 Aligned_cols=146 Identities=8% Similarity=-0.053 Sum_probs=106.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 277 LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD 356 (557)
Q Consensus 277 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (557)
|...+...|++++|+..+....... +.+...+..+...|.+.|++++|+..|++..+.. +.+..+|..+..+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 3445566778888888888775431 1123355677888888899999999998887754 4477888888889999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 008708 357 MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEI-YDKMRVNGIKPNQTIFTTIMDAYGKNKD 426 (557)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 426 (557)
+++|+..|++..+.. |-+...+..+...|.+.|++++|.+. ++++.+.. +-++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 999999999888764 55678888888899999988776654 57777642 3356777777777766664
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.4e-07 Score=82.44 Aligned_cols=186 Identities=12% Similarity=0.043 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCH-HHHHH
Q 008708 271 VVSYALLINAYGKARREEEALAVFEEMLDAGVR-P-THKAYNILLDAFAISGMVDQARTVFKCMRRDRCS-PDI-CSYTT 346 (557)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~-~~~~~ 346 (557)
...+..+...+.+.|++++|+..|+++.+.... | ....+..+..+|.+.|++++|+..|+++.+.... +.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555666677777888888888777764211 1 1345666777777778888888777777654321 111 23444
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 008708 347 MLSAYVN------------------ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIK 408 (557)
Q Consensus 347 li~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 408 (557)
+..++.. .|++++|...|+++.+.. |-+...+...... ..+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~------ 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRL------ 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHH------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHH------
Confidence 4444433 456677777777766542 2222222111100 0000000
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC
Q 008708 409 PNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-Q---KAKNILLSLAKTADERNEANELLGNFNHPNN 477 (557)
Q Consensus 409 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (557)
......+...|.+.|++++|+..|+++++. .|+ + ..+..+..++.+.|+.++|...++.+....+
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 011134566777888888888888888763 333 2 4567777788888888888888887664433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.4e-08 Score=85.13 Aligned_cols=161 Identities=11% Similarity=0.051 Sum_probs=99.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 008708 274 YALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSA-YV 352 (557)
Q Consensus 274 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~ 352 (557)
+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..... |++..+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4455566777777777777777765532 3355667777777777777777777777765543 244333222211 11
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCChhHHH
Q 008708 353 NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP-NQTIFTTIMDAYGKNKDFDSAV 431 (557)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 431 (557)
..+....|...+++..+.. |.+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2222334566677666653 4456677777777777777777777777777643211 2456667777777777777777
Q ss_pred HHHHHHH
Q 008708 432 VWYKEME 438 (557)
Q Consensus 432 ~~~~~m~ 438 (557)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.8e-08 Score=103.94 Aligned_cols=173 Identities=9% Similarity=-0.019 Sum_probs=143.8
Q ss_pred cccCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 008708 247 SFETNYKEVSKIYDQMQ--------RAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAI 318 (557)
Q Consensus 247 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 318 (557)
...+++++|.+.+++.. +.. +.+...+..+...|...|++++|+..|+++.+.. +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 34688889999888887 432 3356788899999999999999999999998764 4577899999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 319 SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEI 398 (557)
Q Consensus 319 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 398 (557)
.|++++|...|++..+.. +.+...+..+..+|.+.|++++ +..|+++.+.+ +.+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998764 3467889999999999999999 99999998875 66788999999999999999999999
Q ss_pred HHHHHHCCCCcC-HHHHHHHHHHHHhcCC
Q 008708 399 YDKMRVNGIKPN-QTIFTTIMDAYGKNKD 426 (557)
Q Consensus 399 ~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 426 (557)
|+++.+. .|+ ...+..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9998875 455 6677778888766555
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.5e-08 Score=91.19 Aligned_cols=184 Identities=11% Similarity=0.019 Sum_probs=102.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCC--CHHHHHHHH
Q 008708 279 NAYGKARREEEALAVFEEMLDAGV---RP--THKAYNILLDAFAISGMVDQARTVFKCMRRD---RCSP--DICSYTTML 348 (557)
Q Consensus 279 ~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~--~~~~~~~li 348 (557)
..|...|++++|...|.+..+... .+ -..+|+.+..+|...|++++|+..|++.... ...+ ...+++.+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566666666666665543210 00 1235566666666667776666666655432 0011 124566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHH
Q 008708 349 SAYVNASDMEGAEKFFRRLKQDGF---VP--NVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPN-QTIFTTIM 418 (557)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~---~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~ 418 (557)
..|.. |++++|+..|++...... .+ ...++..+...|.+.|++++|+..|++..+. +..+. ...+..++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 66666 777777777776654210 00 1345667777777777777777777777642 11111 22455556
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCC---H---HHHHHHHHHHhhcCCHHHHHH
Q 008708 419 DAYGKNKDFDSAVVWYKEMESCGFPPD---Q---KAKNILLSLAKTADERNEANE 467 (557)
Q Consensus 419 ~~~~~~g~~~~A~~~~~~m~~~~~~p~---~---~~~~~l~~~~~~~g~~~~a~~ 467 (557)
.++...|++++|...|++.+ . .|+ . .....++.++ ..|+.+.+..
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 66667777777777777776 2 221 1 1233444444 4566666555
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.6e-08 Score=100.43 Aligned_cols=151 Identities=11% Similarity=-0.035 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 250 TNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVF 329 (557)
Q Consensus 250 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 329 (557)
+++++|...+++..+... .+...+..+...|...|++++|...+++..+.. +.+...+..+..+|...|++++|...+
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 344555555555544321 134555555555555555555555555555432 233445555555555555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Q 008708 330 KCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV---NNLEKMMEIYDKMRV 404 (557)
Q Consensus 330 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~ 404 (557)
++..+.. +.+...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++... |++++|.+.+++..+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 5555432 2234455555555555555555555555555442 33445555555555555 555555555555554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.7e-08 Score=91.32 Aligned_cols=164 Identities=4% Similarity=-0.099 Sum_probs=136.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HH
Q 008708 303 RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITY-GT 381 (557)
Q Consensus 303 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~ 381 (557)
+.+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++... .|+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 4455677888889999999999999999998764 447788999999999999999999999998765 3554433 33
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhh
Q 008708 382 LIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD---QKAKNILLSLAKT 458 (557)
Q Consensus 382 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~ 458 (557)
....+...++.+.|...+++..+.. +.+...+..+..++...|++++|...++++++. .|+ ...+..++..+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHH
Confidence 3344677888999999999998763 556889999999999999999999999999984 454 5688999999999
Q ss_pred cCCHHHHHHHHHhc
Q 008708 459 ADERNEANELLGNF 472 (557)
Q Consensus 459 ~g~~~~a~~~~~~~ 472 (557)
.|+.++|...+++.
T Consensus 268 ~g~~~~a~~~~r~a 281 (287)
T 3qou_A 268 LGTGDALASXYRRQ 281 (287)
T ss_dssp HCTTCHHHHHHHHH
T ss_pred cCCCCcHHHHHHHH
Confidence 99999999888764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.7e-08 Score=101.13 Aligned_cols=154 Identities=8% Similarity=-0.030 Sum_probs=120.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 284 ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKF 363 (557)
Q Consensus 284 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 363 (557)
.|++++|+..+++..+.. +.+...+..+...|...|++++|...+++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988753 4467889999999999999999999999998764 44688899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CChhHHHHHHHHHHhC
Q 008708 364 FRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN---KDFDSAVVWYKEMESC 440 (557)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~ 440 (557)
+++..+.. +.+...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++... |++++|...++++++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998875 5678899999999999999999999999998763 44678899999999999 9999999999999884
Q ss_pred C
Q 008708 441 G 441 (557)
Q Consensus 441 ~ 441 (557)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-07 Score=84.66 Aligned_cols=154 Identities=8% Similarity=-0.025 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHH
Q 008708 305 THKAYNILLDAFAISGMVDQARTVFKCMRRDRCS-P-DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV---ITY 379 (557)
Q Consensus 305 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~ 379 (557)
+...+..+...+...|++++|+..|+++...... | ....+..+..+|.+.|++++|+..|+++.+.. |.+. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 3445556677788888899999888888765321 1 13567778888888888888888888887753 2121 244
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-H-----------
Q 008708 380 GTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-K----------- 447 (557)
Q Consensus 380 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~----------- 447 (557)
..+..++...|.. .+ ..|..+...+...|++++|+..|+++++. .|+. .
T Consensus 82 ~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~ 142 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFL 142 (225)
T ss_dssp HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHH
Confidence 4455555442110 00 00111111222334444444444444431 1221 1
Q ss_pred ------HHHHHHHHHhhcCCHHHHHHHHHhcCCCCCC
Q 008708 448 ------AKNILLSLAKTADERNEANELLGNFNHPNNE 478 (557)
Q Consensus 448 ------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (557)
....+...+.+.|++++|...++++.+..+.
T Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 143 KDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD 179 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence 1134567889999999999999998755443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-06 Score=78.66 Aligned_cols=218 Identities=6% Similarity=0.003 Sum_probs=131.4
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHc---CCH
Q 008708 112 FNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG--RYKNAEAIFRRMQSSGPRPSALTYQIILKLF----VEA---NKF 182 (557)
Q Consensus 112 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~---g~~ 182 (557)
.++|+++++.++..+ |-+..+|+.--.++...| +++++++.++.++...++ +..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 368888888888775 336777888888888888 888999998888887655 555555544444 444 678
Q ss_pred HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHH
Q 008708 183 KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYE--KARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYD 260 (557)
Q Consensus 183 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~ 260 (557)
++++.+++.+++.. +.+..+|+.-.-++.+.|.++ ++++.++++.+..+
T Consensus 127 ~~EL~~~~~~l~~~----pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~------------------------- 177 (306)
T 3dra_A 127 YREFDILEAMLSSD----PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL------------------------- 177 (306)
T ss_dssp HHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-------------------------
T ss_pred HHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-------------------------
Confidence 88888888888643 567777777777777777777 77777777776532
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHH
Q 008708 261 QMQRAGLQPDVVSYALLINAYGKARR------EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQ-ARTVFKCMR 333 (557)
Q Consensus 261 ~~~~~~~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~ 333 (557)
.|...|+.....+.+.+. ++++++.+++++... +-|...|+.+...+.+.|+... +..+..++.
T Consensus 178 --------~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 178 --------KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp --------TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred --------CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 244444444444444443 556666666655543 3455555555555555554222 223333332
Q ss_pred hCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 334 RDR--CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQ 369 (557)
Q Consensus 334 ~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (557)
..+ -+.+...+..++.+|.+.|+.++|.++++.+.+
T Consensus 249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 211 122444444444455555555555555555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.85 E-value=2.1e-06 Score=85.75 Aligned_cols=332 Identities=13% Similarity=0.076 Sum_probs=207.2
Q ss_pred hcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHH
Q 008708 108 KQG-DFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANK-FKEA 185 (557)
Q Consensus 108 ~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~A 185 (557)
+.| +++.|+.+|+.+... -|. |+++.+..+|++.+.. .|+...|...+.-..+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 488899999988764 233 8899999999999874 4699999998888777764 4567
Q ss_pred HHHHHHhHhccCCC-CCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc------------
Q 008708 186 EEVFMTLLDEEKSP-LKPDQKMFHMMIYMYK----KAGGYEKARKLFALMAERGVQQSTVTYNSLMSF------------ 248 (557)
Q Consensus 186 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~------------ 248 (557)
..+|+.++.. .| -+.+..+|...+..+. ..++.+.+..+|+..+......-...|......
T Consensus 68 ~~~fe~al~~--vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~ 145 (493)
T 2uy1_A 68 YEVYEFTLGQ--FENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKI 145 (493)
T ss_dssp HHHHHHHHHH--STTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHH--cCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHH
Confidence 7788888753 12 2346688888887654 356788999999999874222112233322221
Q ss_pred ----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008708 249 ----ETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKAR--R-----EEEALAVFEEMLDAGVRPTHKAYNILLDAFA 317 (557)
Q Consensus 249 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 317 (557)
...+..|..+++.+...-...+...|...+..-...+ - .+.+..+|++++... +.+...|...+..+.
T Consensus 146 ~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 146 VGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLI 224 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 1122333444444432111113345555554432221 1 345778899988753 556788888888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---------CC---CCCHHHHHHHHHH
Q 008708 318 ISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD---------GF---VPNVITYGTLIKG 385 (557)
Q Consensus 318 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~---~p~~~~~~~l~~~ 385 (557)
..|+.+.|..++++.... +.+...|.. |....+.++. ++.+.+. +. ......|...+..
T Consensus 225 ~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~ 295 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNY 295 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHH
Confidence 999999999999999887 334333322 2222111111 2222211 00 1112456677777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 008708 386 YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK-NKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNE 464 (557)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 464 (557)
+.+.+..+.|..+|+++ .. ...+...|...+..-.. .++.+.|..+|+...+. .+-++..+...+......|+.+.
T Consensus 296 ~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~ 372 (493)
T 2uy1_A 296 VLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEEN 372 (493)
T ss_dssp HHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 77788999999999999 32 12355555543333223 33699999999999874 23345666777788888999999
Q ss_pred HHHHHHhc
Q 008708 465 ANELLGNF 472 (557)
Q Consensus 465 a~~~~~~~ 472 (557)
|+.+++++
T Consensus 373 aR~l~er~ 380 (493)
T 2uy1_A 373 ARALFKRL 380 (493)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 99999987
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=3.5e-07 Score=80.38 Aligned_cols=145 Identities=14% Similarity=0.052 Sum_probs=107.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 309 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK 388 (557)
Q Consensus 309 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 388 (557)
+..+...+...|++++|...|++.. .|+...+..+...|...|++++|+..|++..... +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4455666777888888888887664 4577788888888888888888888888877764 5567788888888888
Q ss_pred cCCHHHHHHHHHHHHHCC--------------CCc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 389 VNNLEKMMEIYDKMRVNG--------------IKP-NQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILL 453 (557)
Q Consensus 389 ~g~~~~a~~~~~~m~~~~--------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 453 (557)
.|++++|...|+++.+.. ..| ....+..+..+|.+.|++++|...++++.+ +.|+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~------- 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP------- 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG-------
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc-------
Confidence 888888888888888642 111 136788888899999999999999999987 44543
Q ss_pred HHHhhcCCHHHHHHHHHh
Q 008708 454 SLAKTADERNEANELLGN 471 (557)
Q Consensus 454 ~~~~~~g~~~~a~~~~~~ 471 (557)
..+..+.+...+++
T Consensus 155 ----~~~~~~~a~~~~~~ 168 (213)
T 1hh8_A 155 ----RHSKIDKAMECVWK 168 (213)
T ss_dssp ----GGGHHHHHHHHHHT
T ss_pred ----ccchHHHHHHHHHh
Confidence 23455566666654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.83 E-value=4e-06 Score=77.36 Aligned_cols=220 Identities=8% Similarity=0.041 Sum_probs=122.0
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHH----HHc-
Q 008708 145 GRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN--KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMY----KKA- 217 (557)
Q Consensus 145 g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 217 (557)
...++|+.+++.++..++. +..+|+.--.++...+ +++++++.++.++... +.+..+|+.-...+ ...
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n----Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN----EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC----TTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC----cccHHHHHHHHHHHHHHHHhcc
Confidence 3446778887777776444 5566666666666666 7777777777777532 33344454433333 333
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHH
Q 008708 218 --GGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREE--EALAV 293 (557)
Q Consensus 218 --g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~ 293 (557)
+++++++.+++++.+. . +.+..+|+...-.+.+.|.++ ++++.
T Consensus 122 ~~~~~~~EL~~~~~~l~~--------------------------------~-pkny~aW~~R~~vl~~l~~~~~~~EL~~ 168 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSS--------------------------------D-PKNHHVWSYRKWLVDTFDLHNDAKELSF 168 (306)
T ss_dssp TCCCTHHHHHHHHHHHHH--------------------------------C-TTCHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHh--------------------------------C-CCCHHHHHHHHHHHHHhcccChHHHHHH
Confidence 4455555555555443 2 235666666666666667666 77777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHH
Q 008708 294 FEEMLDAGVRPTHKAYNILLDAFAISGM------VDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEG-AEKFFRR 366 (557)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~ 366 (557)
++++++.. +-|...|+.-...+.+.+. ++++++.+++++... +-|...|+.+...+.+.|+... +..+..+
T Consensus 169 ~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~ 246 (306)
T 3dra_A 169 VDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQ 246 (306)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 77777664 3456666655555555554 555666555555433 3355555555555555554322 3334433
Q ss_pred HHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 367 LKQDG--FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV 404 (557)
Q Consensus 367 m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 404 (557)
+...+ -+.+...+..++++|.+.|+.++|.++++.+.+
T Consensus 247 ~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 247 FVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp TEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 33211 123445555555555555555555555555553
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.3e-08 Score=83.48 Aligned_cols=163 Identities=10% Similarity=0.016 Sum_probs=100.6
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-H
Q 008708 63 VLGTLVRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEA-Y 141 (557)
Q Consensus 63 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~ 141 (557)
.+.....+...|+++.|...++.+.+.. +.+...+..+..++.+.|++++|...|++..... |+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 3333444556677777777777666544 2356667777777777788888877777766553 344433332212 1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHH
Q 008708 142 GRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYE 221 (557)
Q Consensus 142 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 221 (557)
...+....|+..+++..+..+. +...+..+..++...|++++|...|+++++.. +...+...+..++.++...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVN--LGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cccChHHHHHHHHHHHHHhCCCC
Confidence 2222333467777777665333 56777777777777777777777777777421 11123456777777777777777
Q ss_pred HHHHHHHHHHH
Q 008708 222 KARKLFALMAE 232 (557)
Q Consensus 222 ~A~~~~~~~~~ 232 (557)
+|...|++...
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 77777766553
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-07 Score=87.73 Aligned_cols=132 Identities=11% Similarity=0.021 Sum_probs=64.7
Q ss_pred ccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 008708 73 LKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEA 152 (557)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 152 (557)
.+++.+|.++++.+.+... .. .+...+++++|...|++. ...|...|++++|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3556666666666554321 00 011135566666655543 335556667777766
Q ss_pred HHHHHHhCCC----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 008708 153 IFRRMQSSGP----R-PSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKP--DQKMFHMMIYMYKKAGGYEKARK 225 (557)
Q Consensus 153 ~~~~m~~~~~----~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 225 (557)
.|.+...... . .-..+|..+...|...|++++|+..|++.++.....-.+ ...+++.+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 6666543211 0 012345555556666666666666666555321100011 12344555555555 66666655
Q ss_pred HHHHHH
Q 008708 226 LFALMA 231 (557)
Q Consensus 226 ~~~~~~ 231 (557)
.|++..
T Consensus 137 ~~~~Al 142 (307)
T 2ifu_A 137 LYQQAA 142 (307)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.1e-07 Score=74.12 Aligned_cols=107 Identities=11% Similarity=0.120 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008708 342 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 421 (557)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 421 (557)
..+......|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 456666777777788888888887777654 5567777778888888888888888888777653 34567777777888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCC-HHHHHHH
Q 008708 422 GKNKDFDSAVVWYKEMESCGFPPD-QKAKNIL 452 (557)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l 452 (557)
...|++++|+..|++.++ +.|+ ...+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l 121 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ--VDPSNEEAREGV 121 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--HCcCCHHHHHHH
Confidence 888888888888888777 3454 3344433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3e-06 Score=78.62 Aligned_cols=163 Identities=7% Similarity=-0.030 Sum_probs=120.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHH
Q 008708 311 ILLDAFAISGMVDQARTVFKCMRRDRC-SPDI----CSYTTMLSAYVNASDMEGAEKFFRRLKQDGF-VPN----VITYG 380 (557)
Q Consensus 311 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~ 380 (557)
..+..+...|++++|..++++...... .|+. ..+..+...+...|++++|+..++++..... .++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999998876421 2221 1333466677777899999999999887422 222 34688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----C-CCCcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCC-HHHH
Q 008708 381 TLIKGYAKVNNLEKMMEIYDKMRV----N-GIKPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMES----CGFPPD-QKAK 449 (557)
Q Consensus 381 ~l~~~~~~~g~~~~a~~~~~~m~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~ 449 (557)
.++.+|...|++++|...|+++.+ . +..+. ..+|..+..+|.+.|++++|+.++++.++ .+..+. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999884 1 11222 34788899999999999999999998864 222333 4678
Q ss_pred HHHHHHHhhcC-CHHHHHHHHHhcC
Q 008708 450 NILLSLAKTAD-ERNEANELLGNFN 473 (557)
Q Consensus 450 ~~l~~~~~~~g-~~~~a~~~~~~~~ 473 (557)
..+..++.+.| .+++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 88889999999 4699998888764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.5e-06 Score=76.86 Aligned_cols=167 Identities=9% Similarity=-0.028 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCC--
Q 008708 272 VSYALLINAYGKARREEEALAVFEEMLDAGVRPTH------KAYNILLDAFAISGMVDQARTVFKCMRRDRC---SPD-- 340 (557)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~-- 340 (557)
..+...+..+...|++++|...+.+..+.... .. ..+..+...+...|++++|...+++...... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 44556778889999999999999988775322 22 2244456667788899999999998875321 122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcC
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQD--GFVPN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPN 410 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~ 410 (557)
..+++.+...|...|++++|...|+++.+. ..+.+ ..++..++.+|...|++++|...+++..+. +....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 457889999999999999999999988731 11111 257888999999999999999999988742 11111
Q ss_pred -HHHHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 008708 411 -QTIFTTIMDAYGKNKDFDSA-VVWYKEMES 439 (557)
Q Consensus 411 -~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 439 (557)
..+|..+..+|.+.|++++| ...+++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 67788899999999999999 777877653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=8.9e-07 Score=77.76 Aligned_cols=128 Identities=14% Similarity=0.000 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 272 VSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAY 351 (557)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (557)
..+..+...+...|++++|+..|++.. .|+..++..+..+|...|++++|...|++..... +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345667788889999999999998773 5688899999999999999999999999988764 45778899999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 352 VNASDMEGAEKFFRRLKQDGFVPN----------------VITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
...|++++|+..|++..+.. +.+ ...+..+..+|...|++++|...|+++.+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999999999998853 222 278889999999999999999999999975
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.72 E-value=4e-07 Score=72.43 Aligned_cols=109 Identities=10% Similarity=0.049 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 97 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLF 176 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 176 (557)
..+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|+..|++.++..+. +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 345667777888888888888888877664 446777888888888888888888888887776443 667777777788
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHH
Q 008708 177 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMI 211 (557)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 211 (557)
...|++++|++.|+++++.. |.+..++..|.
T Consensus 92 ~~~~~~~~A~~~~~~al~l~----P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD----PSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC----cCCHHHHHHHH
Confidence 88888888888888877542 33444444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.72 E-value=2.4e-07 Score=76.16 Aligned_cols=103 Identities=19% Similarity=0.105 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 420 (557)
...+..+...+.+.|++++|+..|+++.... |.+...|..+..+|...|++++|+..|+++.+.. +.++..|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 4456677777778888888888888877764 5567778888888888888888888888887653 3346777778888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHH
Q 008708 421 YGKNKDFDSAVVWYKEMESCGFPPDQK 447 (557)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~~~~p~~~ 447 (557)
|.+.|++++|...|++.++ +.|+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 8888888888888888877 456554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-07 Score=87.59 Aligned_cols=195 Identities=9% Similarity=0.026 Sum_probs=137.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLS 349 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 349 (557)
+...+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56678888999999999999999999998863 4478889999999999999999999999998764 457788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhH
Q 008708 350 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 429 (557)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 429 (557)
+|...|++++|...|++..+.. +.+...+...+....+ ..++. -+........+.+......+... ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 9999999999999999987642 1111111111111111 11111 22223333345555555555433 3689999
Q ss_pred HHHHHHHHHhCCCCCCHH-HHHHHHHHHhhc-CCHHHHHHHHHhcCCC
Q 008708 430 AVVWYKEMESCGFPPDQK-AKNILLSLAKTA-DERNEANELLGNFNHP 475 (557)
Q Consensus 430 A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 475 (557)
|++.+++..+ ..|+.. ....+...+.+. +.+++|.++++++.+.
T Consensus 154 A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999998887 456654 344444445554 7789999999987653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.69 E-value=8.6e-07 Score=69.92 Aligned_cols=114 Identities=20% Similarity=0.308 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 420 (557)
...+..+...+...|++++|.+.++++.... +.+..++..++..+...|++++|..+++++.+.. +.+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455566666666666666666666666543 4455666666666777777777777777666542 3355666666667
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 008708 421 YGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK 457 (557)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 457 (557)
+...|++++|...++++.+.. +.+...+..+..++.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 777777777777777766532 233444444444443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.68 E-value=7.6e-07 Score=74.53 Aligned_cols=128 Identities=17% Similarity=0.083 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008708 342 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 421 (557)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 421 (557)
..+..+...+...|++++|...|++..... +.+..++..++.++...|++++|...+++..+.. +.+...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 446666677777788888888887777653 4567777778888888888888888888877653 34567777778888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHH--HHHHHhhcCCHHHHHHHHHhc
Q 008708 422 GKNKDFDSAVVWYKEMESCGFPPDQKAKNI--LLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~--l~~~~~~~g~~~~a~~~~~~~ 472 (557)
...|++++|...++++.+.. +.+...+.. .+..+...|++++|...+++.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 88888888888888887632 334444433 333366778888888877664
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1e-06 Score=73.71 Aligned_cols=128 Identities=9% Similarity=0.014 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 387 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 387 (557)
.+..+...+...|++++|...|++..... +.+..++..+...+...|++++|...+++..... +.+...+..++.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34455555666666666666666655432 2345666666666677777777777777666653 445666777777777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcCHHHHHHH--HHHHHhcCChhHHHHHHHHHH
Q 008708 388 KVNNLEKMMEIYDKMRVNGIKPNQTIFTTI--MDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~m~ 438 (557)
..|++++|...|+++.+.. +.+...+..+ +..+...|++++|+..+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777776542 2234444333 333556677777777766553
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=8.4e-07 Score=82.46 Aligned_cols=166 Identities=8% Similarity=-0.006 Sum_probs=104.3
Q ss_pred HHHhhhccchHHHHHHHHHHHhcCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHHHHHH
Q 008708 67 LVRLKQLKKWNVVSEVLEWLRIQSWWDFNE----MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYA-PS----VVSHTAL 137 (557)
Q Consensus 67 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~~~l 137 (557)
+..+...++++.|.++++.+.+.....++. ..+..+...+...|++++|...|++....... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 334556677888888887776644222221 12334666666777888888888877763211 12 3367777
Q ss_pred HHHHHhcCChHHHHHHHHHHHh----C-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccC-CC-CCCCHHHHHH
Q 008708 138 MEAYGRGGRYKNAEAIFRRMQS----S-GPRP-SALTYQIILKLFVEANKFKEAEEVFMTLLDEEK-SP-LKPDQKMFHM 209 (557)
Q Consensus 138 i~~~~~~g~~~~A~~~~~~m~~----~-~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~~~~~~ 209 (557)
..+|...|++++|+..|+++.+ . +..+ ...++..+...|.+.|++++|...++++++... .+ ...-..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7888888888888888877763 1 1111 223666777778888888888888777765311 11 1112466777
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHH
Q 008708 210 MIYMYKKAG-GYEKARKLFALMAE 232 (557)
Q Consensus 210 l~~~~~~~g-~~~~A~~~~~~~~~ 232 (557)
+..+|.+.| .+++|...|++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 777888888 45788877776653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.9e-07 Score=76.76 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHH
Q 008708 131 VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMM 210 (557)
Q Consensus 131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 210 (557)
...+..+...+.+.|++++|+..|++.....+. +...|..+..++...|++++|+..|++++... +.+...|..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~----P~~~~~~~~l 110 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG----KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC----CCCcHHHHHH
Confidence 445555556666666666666666666554332 55556666666666666666666666665432 2334555666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 008708 211 IYMYKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 211 ~~~~~~~g~~~~A~~~~~~~~~~ 233 (557)
..+|...|++++|+..|++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666666554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-06 Score=68.35 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=86.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKL 175 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 175 (557)
...+..+...+...|++++|.+.|+++.... +.+..++..+...+...|++++|+..++++....+ .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 4567778888888888888888888887654 34677888888888888888888888888877543 367777888888
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc
Q 008708 176 FVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA 217 (557)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (557)
+...|++++|...++++++.. +.+...+..+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD----PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHhc
Confidence 888888888888888887532 34455666666555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=7.6e-07 Score=70.90 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 420 (557)
...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3445555556666666666666666655543 3455566666666666666666666666666542 3345566666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 008708 421 YGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADE 461 (557)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 461 (557)
+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 666666666666666666532 2344555555555555544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4.2e-05 Score=71.35 Aligned_cols=173 Identities=7% Similarity=-0.010 Sum_probs=118.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-C-CHHHH
Q 008708 109 QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG-RYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA-N-KFKEA 185 (557)
Q Consensus 109 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-g-~~~~A 185 (557)
.+..++|+++++.++..+ +.+..+|+.--.++...| .+++++++++.++...++ +..+|+.-..++... + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence 344578999999998875 346778888888888888 599999999999887665 777888777777776 6 88899
Q ss_pred HHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHH
Q 008708 186 EEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYE--------KARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSK 257 (557)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~ 257 (557)
+++++++++. -+.+..+|+.-.-++.+.|.++ ++++.++++.+.
T Consensus 145 L~~~~k~L~~----dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~------------------------ 196 (349)
T 3q7a_A 145 IEYIHGSLLP----DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV------------------------ 196 (349)
T ss_dssp HHHHHHHTSS----CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHh----CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh------------------------
Confidence 9999999753 2556777776555555555444 555555555543
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 008708 258 IYDQMQRAGLQPDVVSYALLINAYGKARR-------EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGM 321 (557)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 321 (557)
. +.|...|+.....+.+.+. ++++++.+.+++... +-|...|+-+-..+.+.|.
T Consensus 197 --------d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 197 --------D-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp --------C-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred --------C-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 2 2256666666666655554 567777777776653 4466666666655555554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.3e-07 Score=71.77 Aligned_cols=117 Identities=11% Similarity=0.021 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44556666666667777777777777666553 4456666667777777777777777777766542 334666666677
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcC
Q 008708 420 AYGKNKDFDSAVVWYKEMESCGFPP-DQKAKNILLSLAKTAD 460 (557)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g 460 (557)
++.+.|++++|...+++..+. .| +...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 777777777777777776652 23 2344555555554443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.2e-06 Score=76.54 Aligned_cols=173 Identities=11% Similarity=0.056 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC--HH
Q 008708 133 SHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSA-----LTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD--QK 205 (557)
Q Consensus 133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~ 205 (557)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|+..+.++++.......+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445566677777777777777776664332111 1233455566778899999999988875422222222 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHh
Q 008708 206 MFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQP--DVVSYALLINAYGK 283 (557)
Q Consensus 206 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~ 283 (557)
+++.++..|...|++++|...|++..+. ++ .....+ ...++..+...|..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~-------------------------~~---~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQ-------------------------LE---ALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HH---HSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------------HH---hcCccccchHHHHHhHHHHHHH
Confidence 8889999999999999999999887642 11 000001 12578888999999
Q ss_pred cCCHHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 008708 284 ARREEEALAVFEEMLDAG----VRP-THKAYNILLDAFAISGMVDQA-RTVFKCMR 333 (557)
Q Consensus 284 ~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A-~~~~~~~~ 333 (557)
.|++++|+..+++..+.. ... -..+|..+..+|.+.|++++| ...+++..
T Consensus 209 ~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 999999999999876531 111 155777888888888888888 66666554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-06 Score=70.02 Aligned_cols=108 Identities=16% Similarity=0.216 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCcC----HHHHH
Q 008708 342 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG--IKPN----QTIFT 415 (557)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~----~~~~~ 415 (557)
.++..+...+.+.|++++|+..|++.++.. |.+...|..+..+|.+.|++++|++.+++.++.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456677778888888888888888877764 5567778888888888888888888888877531 1111 24667
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 416 TIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNIL 452 (557)
Q Consensus 416 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 452 (557)
.+..++...|++++|+..|++.++ ..|++.+...+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 777788888888888888888876 46776655443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-07 Score=77.00 Aligned_cols=98 Identities=8% Similarity=-0.041 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
+...+..+...+...|++++|+..|++..... +.+...|..+..+|...|++++|...|+++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34556666777777888888888888777654 5577777777788888888888888888877643 335667777777
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 008708 420 AYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~ 439 (557)
+|...|++++|...|++.++
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888887766
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.5e-07 Score=77.77 Aligned_cols=118 Identities=11% Similarity=0.091 Sum_probs=66.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCH--HHH
Q 008708 319 SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKG-YAKVNNL--EKM 395 (557)
Q Consensus 319 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~--~~a 395 (557)
.|++++|...+++..... +.+...+..+...|...|++++|...|+++.+.. +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 445555555555554432 2345555566666666666666666666655543 3355555556666 5566665 666
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 396 MEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 396 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
...++++.+.. +.+...+..+..++...|++++|...++++.+
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 66666666542 23355566666666666666666666666665
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-06 Score=68.59 Aligned_cols=116 Identities=13% Similarity=0.043 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 387 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 387 (557)
.+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..... +.+...+..+..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 44444455555555555555555554432 2244555555555555566666666655555442 334555556666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 008708 388 KVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD 426 (557)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 426 (557)
..|++++|...|++..+.. +.+...+..+..++.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 6666666666666655532 2244555555555555554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-06 Score=69.64 Aligned_cols=119 Identities=11% Similarity=-0.011 Sum_probs=92.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 94 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 173 (557)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 173 (557)
.+...+..+...+.+.|++++|...|++..+.. +.+..++..+..++...|++++|+..+++..+..+. +...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 345677888888899999999999999888764 347788888888898999999999999888876433 677888888
Q ss_pred HHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC
Q 008708 174 KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 218 (557)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 218 (557)
.++...|++++|.+.|+++++.. +.+...+..+..++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD----SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC----GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHhc
Confidence 88889999999999998887532 234456666666666554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.57 E-value=9.9e-07 Score=76.69 Aligned_cols=157 Identities=14% Similarity=0.061 Sum_probs=96.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCC
Q 008708 282 GKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD----RCS-PDICSYTTMLSAYVNASD 356 (557)
Q Consensus 282 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~ 356 (557)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.... +.. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3456777777744444321 1224456666777777777777777777766541 111 123456677777778888
Q ss_pred HHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcC
Q 008708 357 MEGAEKFFRRLKQD----GFVP--NVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKP-NQTIFTTIMDAYGKNK 425 (557)
Q Consensus 357 ~~~A~~~~~~m~~~----~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g 425 (557)
+++|...+++.... +-.| ....+..+...+...|++++|...+++..+. +... -..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888777776542 1011 2345677788888888888888888877632 1111 1234567777888888
Q ss_pred ChhHHHHHHHHHHh
Q 008708 426 DFDSAVVWYKEMES 439 (557)
Q Consensus 426 ~~~~A~~~~~~m~~ 439 (557)
++++|...+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888877754
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-06 Score=69.02 Aligned_cols=97 Identities=13% Similarity=0.073 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 420 (557)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456666667777777777777777777654 5566777777777777788888887777777643 3346677777777
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 008708 421 YGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~ 439 (557)
+...|++++|...+++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 7778888888877777765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.57 E-value=7.9e-07 Score=81.97 Aligned_cols=99 Identities=14% Similarity=0.062 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 008708 130 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 209 (557)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 209 (557)
+...+..+...+...|++++|+..|++.....+. +...|..+..++.+.|++++|+..++++++. .+.+...+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~ 77 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL----DGQSVKAHFF 77 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCHHHHHH
Confidence 4556666666777777777777777776665332 5666667777777777777777777777642 2345566777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 008708 210 MIYMYKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~~~~~ 233 (557)
+..+|...|++++|...|++..+.
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777766543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.56 E-value=7.6e-07 Score=77.44 Aligned_cols=156 Identities=13% Similarity=-0.026 Sum_probs=115.9
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCC
Q 008708 317 AISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD----GF-VPNVITYGTLIKGYAKVNN 391 (557)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~l~~~~~~~g~ 391 (557)
...|++++|.++++.+.. .......++..+...+...|++++|...+++.... +. +....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467899999996655543 22245678899999999999999999999988761 21 2234678889999999999
Q ss_pred HHHHHHHHHHHHHC----CCCc--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHhhcC
Q 008708 392 LEKMMEIYDKMRVN----GIKP--NQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG-FPPDQ----KAKNILLSLAKTAD 460 (557)
Q Consensus 392 ~~~a~~~~~~m~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~----~~~~~l~~~~~~~g 460 (557)
+++|...+++..+. +-.| ....+..+...+...|++++|...+++..+.. -.++. .++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999988753 2111 24567888889999999999999999886410 01222 34577888999999
Q ss_pred CHHHHHHHHHhcC
Q 008708 461 ERNEANELLGNFN 473 (557)
Q Consensus 461 ~~~~a~~~~~~~~ 473 (557)
++++|...+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-06 Score=78.43 Aligned_cols=134 Identities=8% Similarity=-0.104 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN--VITYGTLIKG 385 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~ 385 (557)
....+..++...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 44556677888999999999998887643 443366666678889999999999998554431 111 2367788999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 008708 386 YAKVNNLEKMMEIYDKMRVNGIKPN--QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 446 (557)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 446 (557)
+...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.. ..|+.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~~ 241 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPEP 241 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCCH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH
Confidence 9999999999999999885432243 34667777888899999999999999988 45653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=6.5e-05 Score=70.09 Aligned_cols=178 Identities=8% Similarity=0.028 Sum_probs=116.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHc
Q 008708 139 EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN-KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA 217 (557)
Q Consensus 139 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (557)
......+..++|++++++++..++. +..+|+.--.++...| .+++++++++.++... +.+..+|+.-..++...
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n----PKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN----LKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT----CCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHh
Confidence 3334455667899999999887655 6777777777777788 5899999999998632 56677888776666666
Q ss_pred -C-CHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------
Q 008708 218 -G-GYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARRE-------- 287 (557)
Q Consensus 218 -g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-------- 287 (557)
+ ++++++.+++++.+.. +.+..+|+...-.+.+.|.+
T Consensus 137 ~~~~~~~EL~~~~k~L~~d---------------------------------pkNy~AW~~R~wvl~~l~~~~~~~~~~~ 183 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPD---------------------------------PKNYHTWAYLHWLYSHFSTLGRISEAQW 183 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSC---------------------------------TTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred cCCChHHHHHHHHHHHHhC---------------------------------CCCHHHHHHHHHHHHHhccccccchhhH
Confidence 6 7777777777777642 12444444433333333333
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 288 EEALAVFEEMLDAGVRPTHKAYNILLDAFAISGM-------VDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD 356 (557)
Q Consensus 288 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (557)
.++++.++++++.. +-|...|+.....+.+.+. ++++++.+++..... +-|...|+.+-..+.+.|+
T Consensus 184 ~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 184 GSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 37888888887764 4567777777777666665 566777776666543 3356666665555555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=2.1e-06 Score=81.32 Aligned_cols=153 Identities=16% Similarity=0.036 Sum_probs=120.8
Q ss_pred ccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--------------HHHHHHHH
Q 008708 73 LKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS--------------VVSHTALM 138 (557)
Q Consensus 73 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--------------~~~~~~li 138 (557)
+.+++.|.+.++...... +.+...+..+...|.+.|++++|...|++..+...... ..+|..+.
T Consensus 126 L~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 445555555444333222 12356788899999999999999999999988742211 58999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC
Q 008708 139 EAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 218 (557)
Q Consensus 139 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 218 (557)
.+|.+.|++++|+..+++.++..+. +..+|..+..+|...|++++|+..|+++++.. +.+..++..+..++.+.|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY----PNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999887544 78899999999999999999999999998643 456788999999999999
Q ss_pred CHHHH-HHHHHHHHH
Q 008708 219 GYEKA-RKLFALMAE 232 (557)
Q Consensus 219 ~~~~A-~~~~~~~~~ 232 (557)
+.++| ...|..|..
T Consensus 279 ~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 279 RQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 99988 456666654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=4.2e-06 Score=65.06 Aligned_cols=110 Identities=15% Similarity=0.052 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 420 (557)
...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3456666667777777777777777776653 4466677777777777777777777777777642 3356677777777
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 421 YGKNKDFDSAVVWYKEMESCGFPPDQKAKNILL 453 (557)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 453 (557)
+...|++++|...+++..+.. +.+...+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 113 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQ 113 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 777788888888777777632 22334444433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=2.3e-06 Score=81.04 Aligned_cols=94 Identities=12% Similarity=-0.011 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008708 342 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 421 (557)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 421 (557)
.+|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|+++++.. +.+...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 455566666666666666666666666543 4455666666666666666666666666666542 23455566666666
Q ss_pred HhcCChhHH-HHHHHHH
Q 008708 422 GKNKDFDSA-VVWYKEM 437 (557)
Q Consensus 422 ~~~g~~~~A-~~~~~~m 437 (557)
.+.|+.++| ..+++.|
T Consensus 275 ~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 666666665 3344444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=5.8e-07 Score=73.82 Aligned_cols=99 Identities=10% Similarity=0.031 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHH
Q 008708 130 SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHM 209 (557)
Q Consensus 130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 209 (557)
+...+..+...+...|++++|+..|++.....+. +...|..+..++...|++++|+..|++++... +.+...+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----p~~~~~~~~ 94 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD----IXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCTHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCchHHHH
Confidence 3445555566666666666666666666554332 55566666666666666666666666665432 234455666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 008708 210 MIYMYKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 210 l~~~~~~~g~~~~A~~~~~~~~~~ 233 (557)
+..+|...|++++|...|++..+.
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666665543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.50 E-value=7e-07 Score=75.90 Aligned_cols=124 Identities=13% Similarity=0.078 Sum_probs=102.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHhcCCh--h
Q 008708 352 VNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA-YGKNKDF--D 428 (557)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~--~ 428 (557)
...|++++|...+++..... +.+...+..+...|...|++++|...|+++.+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45688999999999988764 6688999999999999999999999999998753 4467888888888 7899998 9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCC
Q 008708 429 SAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNE 478 (557)
Q Consensus 429 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (557)
+|...++++++.. +.+...+..+...+...|++++|...++++....+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 9999999998843 445678888999999999999999999998755543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.5e-05 Score=72.52 Aligned_cols=183 Identities=10% Similarity=0.035 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHH
Q 008708 287 EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG--MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD-MEGAEKF 363 (557)
Q Consensus 287 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~ 363 (557)
+++++.+++.+.... +.+..+|+.-...+...+ .+++++.+++.+.+.. +.|..+|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 345555555555442 334455555555555555 3566666666665543 3355555555555555555 4566666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-----
Q 008708 364 FRRLKQDGFVPNVITYGTLIKGYAKV--------------NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN----- 424 (557)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----- 424 (557)
+..+.+.. +-|...|+.....+.+. +.++++++.+.+.+... +-|...|+.+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 66665544 44555555555444443 33556666666666542 33455555444444433
Q ss_pred ------CChhHHHHHHHHHHhCCCCCCHH-HHHHHH---HHHhhcCCHHHHHHHHHhcCCC
Q 008708 425 ------KDFDSAVVWYKEMESCGFPPDQK-AKNILL---SLAKTADERNEANELLGNFNHP 475 (557)
Q Consensus 425 ------g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~---~~~~~~g~~~~a~~~~~~~~~~ 475 (557)
+.++++++.++++.+ +.|+.. .+..++ .+....|..+++...+.++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 345666666666666 345441 111111 1222355666666666665543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-05 Score=71.83 Aligned_cols=191 Identities=8% Similarity=-0.068 Sum_probs=124.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHh------------CCCC-----
Q 008708 108 KQGDFNKAEKVLSFMNKKGYAPSVVSHTAL-------MEAYGRGGRYKNAEAIFRRMQS------------SGPR----- 163 (557)
Q Consensus 108 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~------------~~~~----- 163 (557)
..++...|.+.|.++.+.. +-....|+.+ ...+.+.++..+++..+..-.. .|.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5788899999999988875 3467888888 5666666666666666665544 1110
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 008708 164 ---PSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTV 240 (557)
Q Consensus 164 ---~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 240 (557)
--......+...+...|++++|.++|..+.. ..|+......+...+.+.+++++|+..|+..... |+..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-----~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~ 168 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-----AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKF 168 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-----TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcc
Confidence 0022344556677888888888888887753 1344336666677888888888888888644332 0000
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHH
Q 008708 241 TYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT--HKAYNILLDAFAI 318 (557)
Q Consensus 241 ~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~ 318 (557)
.....+..+..++...|++++|+..|++.......|. .........++.+
T Consensus 169 ----------------------------~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~ 220 (282)
T 4f3v_A 169 ----------------------------LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS 220 (282)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH
T ss_pred ----------------------------cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH
Confidence 0123556677778888888888888887764332143 3355566667777
Q ss_pred cCCHHHHHHHHHHHHhC
Q 008708 319 SGMVDQARTVFKCMRRD 335 (557)
Q Consensus 319 ~g~~~~A~~~~~~~~~~ 335 (557)
.|+.++|..+|+++...
T Consensus 221 lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 221 QGNESAAVALLEWLQTT 237 (282)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 88888888888877765
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2e-06 Score=68.45 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CcC----HHHHH
Q 008708 342 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGI--KPN----QTIFT 415 (557)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~ 415 (557)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456666677777777777777777776653 45667777777777778888888888777765321 112 56677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 416 TIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSL 455 (557)
Q Consensus 416 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 455 (557)
.+..++...|++++|...++++.+ ..|+......+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH--hCCCHHHHHHHHHH
Confidence 777778888888888888888777 34566555554443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.7e-06 Score=70.40 Aligned_cols=96 Identities=11% Similarity=-0.003 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008708 342 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 421 (557)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 421 (557)
..+..+...+.+.|++++|...|+++.... +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 344555566666777777777777666653 4566666677777777777777777777766543 33456666666777
Q ss_pred HhcCChhHHHHHHHHHHh
Q 008708 422 GKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~ 439 (557)
...|++++|...|+..++
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777776665
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-05 Score=64.70 Aligned_cols=99 Identities=10% Similarity=0.030 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 008708 339 PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIM 418 (557)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 418 (557)
.+...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345566666666667777777777776666553 4456666667777777777777777777766543 33466666677
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 008708 419 DAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 419 ~~~~~~g~~~~A~~~~~~m~~ 439 (557)
.++...|++++|...++++.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777776654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=1.4e-05 Score=62.00 Aligned_cols=96 Identities=13% Similarity=0.031 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 387 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 387 (557)
.+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 33444444445555555555555444332 2234445555555555555555555555554432 334455555555555
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 008708 388 KVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 388 ~~g~~~~a~~~~~~m~~~ 405 (557)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 555555555555555543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.39 E-value=5.9e-06 Score=69.08 Aligned_cols=100 Identities=12% Similarity=0.099 Sum_probs=82.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 95 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 174 (557)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 174 (557)
+...+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|...|++++|+..|++.++..+. +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 35567788888889999999999999888764 347888888888999999999999999888876543 6778888888
Q ss_pred HHHHcCCHHHHHHHHHHhHhcc
Q 008708 175 LFVEANKFKEAEEVFMTLLDEE 196 (557)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~ 196 (557)
++...|++++|...|+++++..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 8889999999999998888643
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00042 Score=64.35 Aligned_cols=121 Identities=10% Similarity=0.082 Sum_probs=82.5
Q ss_pred hcCChh-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 108 KQGDFN-KAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR----------YKNAEAIFRRMQSSGPRPSALTYQIILKLF 176 (557)
Q Consensus 108 ~~g~~~-~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 176 (557)
+.|.+. +|+++++.+...+ |.+..+|+.--.++...+. +++++.+++.+....++ +..+|+.-.-++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 445554 7888888888775 3356677765444444333 57788888888776554 777777776666
Q ss_pred HHcC--CHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcC
Q 008708 177 VEAN--KFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG-YEKARKLFALMAERG 234 (557)
Q Consensus 177 ~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~ 234 (557)
...+ .+++++.+++.+++.+ +.|..+|+.-.-++...|. ++++++.++.+.+..
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d----prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~ 175 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD----ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 175 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred hccCcccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC
Confidence 6777 3788888888887643 5566777776666667776 577777777777653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-05 Score=63.77 Aligned_cols=95 Identities=13% Similarity=0.064 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 308 AYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYA 387 (557)
Q Consensus 308 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 387 (557)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 44555556666666666666666665543 3355666666666667777777777777666653 445666667777777
Q ss_pred HcCCHHHHHHHHHHHHH
Q 008708 388 KVNNLEKMMEIYDKMRV 404 (557)
Q Consensus 388 ~~g~~~~a~~~~~~m~~ 404 (557)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 77777777777777665
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.4e-06 Score=66.38 Aligned_cols=96 Identities=17% Similarity=0.079 Sum_probs=57.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CC----HHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR--PS----ALTYQI 171 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~----~~~~~~ 171 (557)
.+..+...+.+.|++++|++.|++..+.. |.+..+|+.+..+|...|++++|++.+++.++..+. ++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34556666777777777777777766653 335666666777777777777777777666543211 11 124455
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHh
Q 008708 172 ILKLFVEANKFKEAEEVFMTLLD 194 (557)
Q Consensus 172 ll~~~~~~g~~~~A~~~~~~~~~ 194 (557)
+..++...|++++|++.|++.+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55556666666666666666553
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.7e-05 Score=64.62 Aligned_cols=111 Identities=13% Similarity=0.045 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN----VITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFT 415 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 415 (557)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4566666777777777777777777777664 344 5667777777777777777777777776642 33566677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 008708 416 TIMDAYGKNKDFDSAVVWYKEMESCGFPP-DQKAKNILLSL 455 (557)
Q Consensus 416 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~ 455 (557)
.+..++...|++++|...+++..+. .| +...+..+...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHH
Confidence 7777777777777777777777763 34 33444444333
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.37 E-value=8e-06 Score=68.24 Aligned_cols=98 Identities=13% Similarity=0.038 Sum_probs=83.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45667788888889999999999999888764 5578888899999999999999999999988753 445888889999
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 008708 420 AYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~ 439 (557)
+|...|++++|...|++.++
T Consensus 88 ~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999887
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=7.2e-06 Score=71.01 Aligned_cols=121 Identities=12% Similarity=0.024 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN----------------VITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 406 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (557)
.+..+...+...|++++|+..|++..... +.+ ...+..+..+|...|++++|...+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34444555555555555555555555432 111 2566677777777777777777777777642
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 008708 407 IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEAN 466 (557)
Q Consensus 407 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 466 (557)
+.+...+..+..+|...|++++|...|++.++.. +.+...+..+..++...++.+++.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777788888877777777632 334456666666666666665555
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.34 E-value=5.4e-06 Score=63.75 Aligned_cols=95 Identities=12% Similarity=0.015 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHH
Q 008708 343 SYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP--NQTIFTTIMDA 420 (557)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~ 420 (557)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34445555555555555555555555442 3345555555555555666666666665555532 22 35555555555
Q ss_pred HHhc-CChhHHHHHHHHHHh
Q 008708 421 YGKN-KDFDSAVVWYKEMES 439 (557)
Q Consensus 421 ~~~~-g~~~~A~~~~~~m~~ 439 (557)
+.+. |++++|.+.+++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 5555 666666666655554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.34 E-value=1e-05 Score=65.05 Aligned_cols=100 Identities=12% Similarity=-0.041 Sum_probs=75.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 94 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 173 (557)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 173 (557)
.+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|+..+++..+..+. +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 356677778888888888888888888877664 345777888888888888888888888887776443 667777777
Q ss_pred HHHHHcCCHHHHHHHHHHhHhc
Q 008708 174 KLFVEANKFKEAEEVFMTLLDE 195 (557)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~ 195 (557)
.++...|++++|...|.++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888888888888877753
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-05 Score=69.74 Aligned_cols=95 Identities=16% Similarity=0.006 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008708 342 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 421 (557)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 421 (557)
..+..+..+|...|++++|+..+++..... +.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 566777777778888888888888777654 5567777788888888888888888888877642 33566677777777
Q ss_pred HhcCChhHHH-HHHHHHH
Q 008708 422 GKNKDFDSAV-VWYKEME 438 (557)
Q Consensus 422 ~~~g~~~~A~-~~~~~m~ 438 (557)
...++.+++. ..+..+.
T Consensus 167 ~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 6666665555 4444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.6e-06 Score=64.81 Aligned_cols=102 Identities=10% Similarity=-0.006 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHH
Q 008708 375 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP--DQKAKNIL 452 (557)
Q Consensus 375 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l 452 (557)
+...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 45567788899999999999999999998753 4568889999999999999999999999999853 33 57889999
Q ss_pred HHHHhhc-CCHHHHHHHHHhcCCCCCC
Q 008708 453 LSLAKTA-DERNEANELLGNFNHPNNE 478 (557)
Q Consensus 453 ~~~~~~~-g~~~~a~~~~~~~~~~~~~ 478 (557)
..++... |++++|.+.++++....+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999999 9999999999998765553
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.32 E-value=7.2e-06 Score=66.64 Aligned_cols=94 Identities=12% Similarity=0.018 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 178 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 178 (557)
+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|+..|++.....+. ++..+..+..++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 3445555556666666666666555543 234555555566666666666666666665554332 44455555555556
Q ss_pred cCCHHHHHHHHHHhHh
Q 008708 179 ANKFKEAEEVFMTLLD 194 (557)
Q Consensus 179 ~g~~~~A~~~~~~~~~ 194 (557)
.|++++|...|+.+++
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666555553
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=6e-06 Score=64.97 Aligned_cols=92 Identities=8% Similarity=0.012 Sum_probs=47.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 008708 346 TMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNK 425 (557)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 425 (557)
.+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.+.|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 33444555555555555555555443 3345555555555555555555555555555432 223445555555555555
Q ss_pred ChhHHHHHHHHHHh
Q 008708 426 DFDSAVVWYKEMES 439 (557)
Q Consensus 426 ~~~~A~~~~~~m~~ 439 (557)
++++|+..++++++
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.8e-05 Score=62.43 Aligned_cols=97 Identities=8% Similarity=-0.043 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 306 HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPD----ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGT 381 (557)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 381 (557)
...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|+..+++..... +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 344444445555555555555555555443 222 3445555555666666666666666555542 334555666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 382 LIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 382 l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
+..++...|++++|...|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666666666666666666666553
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.28 E-value=9.2e-06 Score=64.47 Aligned_cols=106 Identities=11% Similarity=0.149 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 008708 309 YNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF--VPN----VITYGTL 382 (557)
Q Consensus 309 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~~l 382 (557)
+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++++..... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3334444444444444444444444322 22344444444455555555555555554443210 111 4455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 008708 383 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTI 417 (557)
Q Consensus 383 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 417 (557)
..++...|++++|.+.|+++.+. .|+......+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 66666666666666666665553 2344444333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-05 Score=63.40 Aligned_cols=95 Identities=8% Similarity=-0.032 Sum_probs=69.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFV 177 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 177 (557)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+..+. +...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34566677777888888888888777654 346777777777788888888888888777776443 5667777777777
Q ss_pred HcCCHHHHHHHHHHhHh
Q 008708 178 EANKFKEAEEVFMTLLD 194 (557)
Q Consensus 178 ~~g~~~~A~~~~~~~~~ 194 (557)
..|++++|+..++++++
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77788888877777764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.23 E-value=8.9e-05 Score=72.90 Aligned_cols=194 Identities=9% Similarity=-0.005 Sum_probs=101.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH
Q 008708 279 NAYGKARREEEALAVFEEMLDAGVRPT----------------HKAYNILLDAFAISGMVDQARTVFKCMRRDRC-SPDI 341 (557)
Q Consensus 279 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~ 341 (557)
..+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+++..+..... .++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 344556666666666666655321110 11345566666666666666666665543210 1111
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC--
Q 008708 342 ----CSYTTMLSAYVNASDMEGAEKFFRRLKQ----DGFVP-NVITYGTLIKGYAKVNNLEKMMEIYDKMRVN--GIK-- 408 (557)
Q Consensus 342 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~-- 408 (557)
.+.+.+...+...|+++.|..+++.... .+..+ -..++..++..|...|++++|..+++++... +..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1222233333445666666666665543 12122 2345666677777777777777777665531 111
Q ss_pred c-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 008708 409 P-NQTIFTTIMDAYGKNKDFDSAVVWYKEMESC--GFPPD----QKAKNILLSLAKTADERNEANELLGNF 472 (557)
Q Consensus 409 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 472 (557)
+ ...++..++..|...|++++|..++++.... .+..+ ...+..+...+...|++++|...+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1 1345666666777777777777776665431 11111 123444455566667777766655443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.6e-05 Score=66.20 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 008708 375 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 446 (557)
Q Consensus 375 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 446 (557)
+...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|++.++ +.|+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~ 130 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGG
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCC
Confidence 34567778888888888888888888887753 44577788888888888888888888888877 34544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.4e-05 Score=60.47 Aligned_cols=92 Identities=8% Similarity=-0.031 Sum_probs=57.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHH
Q 008708 346 TMLSAYVNASDMEGAEKFFRRLKQDGFVPNV---ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN---QTIFTTIMD 419 (557)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~ 419 (557)
.+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...|+++.+.. +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 34455666667777777776666542 2222 455666667777777777777777766542 222 455666666
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 008708 420 AYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 420 ~~~~~g~~~~A~~~~~~m~~ 439 (557)
++...|++++|...++++.+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777766
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-05 Score=66.44 Aligned_cols=137 Identities=12% Similarity=0.064 Sum_probs=101.9
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C----C
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYA-PS----VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-P----S 165 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~----~ 165 (557)
...+..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|.+.+++....... + .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 346778888999999999999999887653100 12 247888889999999999999999987653111 1 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 166 ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKS-P-LKPDQKMFHMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 166 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
..++..+...+...|++++|.+.+++.++.... + ......++..+...+...|++++|...+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456777888899999999999999988753111 1 111235677888999999999999999988765
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.15 E-value=2.5e-05 Score=77.34 Aligned_cols=128 Identities=17% Similarity=0.126 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 008708 342 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPN---------------VITYGTLIKGYAKVNNLEKMMEIYDKMRVNG 406 (557)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 406 (557)
..+..+...|.+.|++++|+..|++..+.. +.+ ...|..+..+|.+.|++++|+..++++++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 345555556666666666666666655532 112 5778888899999999999999999988753
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHH-HHHhcC
Q 008708 407 IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPD-QKAKNILLSLAKTADERNEANE-LLGNFN 473 (557)
Q Consensus 407 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~-~~~~~~ 473 (557)
+.+...|..+..+|...|++++|+..|+++++ +.|+ ...+..+..++.+.++.+++.+ +++++.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678888889999999999999999999987 4454 4577778888888888887764 445554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00012 Score=71.97 Aligned_cols=212 Identities=10% Similarity=0.020 Sum_probs=128.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008708 211 IYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEA 290 (557)
Q Consensus 211 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 290 (557)
...+.+.|++++|++.|..+.+........... .+........ ....+..++..|...|++++|
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~-----------~~~al~~l~~~y~~~~~~~~a 74 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAG-----ASVDDKRRNE-----------QETSILELGQLYVTMGAKDKL 74 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSS-----SSBCSHHHHH-----------HHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHH-----HHHHHHHhhh-----------HHHHHHHHHHHHHHCCCHHHH
Confidence 456678899999999998888753221110000 0000000000 112356677888888888888
Q ss_pred HHHHHHHHHcCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 008708 291 LAVFEEMLDAGV-RPTH----KAYNILLDAFAISGMVDQARTVFKCMRR----DRCSP-DICSYTTMLSAYVNASDMEGA 360 (557)
Q Consensus 291 ~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A 360 (557)
.+.+..+...-- .++. .+.+.+...+...|+++.|..+++.... .+..+ -..++..+...|...|++++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (434)
T 4b4t_Q 75 REFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDS 154 (434)
T ss_dssp HHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHH
Confidence 888877654211 1111 1223333344456778888888776643 22222 245677788888888888888
Q ss_pred HHHHHHHHhC--CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcC--HHHHHHHHHHHHhcCChhH
Q 008708 361 EKFFRRLKQD--GF---VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKPN--QTIFTTIMDAYGKNKDFDS 429 (557)
Q Consensus 361 ~~~~~~m~~~--~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~ 429 (557)
..+++++... +. +....++..++..|...|++++|..++++.... +.++. ...+..++..+...|++++
T Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~ 234 (434)
T 4b4t_Q 155 LALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKT 234 (434)
T ss_dssp HHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHH
Confidence 8888876542 11 112356777888888888888888888877631 11111 3456666677778888888
Q ss_pred HHHHHHHHH
Q 008708 430 AVVWYKEME 438 (557)
Q Consensus 430 A~~~~~~m~ 438 (557)
|...|.+..
T Consensus 235 A~~~~~~a~ 243 (434)
T 4b4t_Q 235 AFSYFFESF 243 (434)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776664
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2.4e-05 Score=75.01 Aligned_cols=91 Identities=11% Similarity=0.126 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 375 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLS 454 (557)
Q Consensus 375 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 454 (557)
+..+|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++++.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567777777778888888888888877653 3356777777778888888888888888777632 234556666666
Q ss_pred HHhhcCCHHHHHH
Q 008708 455 LAKTADERNEANE 467 (557)
Q Consensus 455 ~~~~~g~~~~a~~ 467 (557)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.9e-05 Score=65.31 Aligned_cols=95 Identities=15% Similarity=0.155 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCc-CHHH
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLKQD----GFVP-NVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----GIKP-NQTI 413 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~ 413 (557)
+..+...+...|++++|...+++.... +.++ ...++..+...+...|++++|...+++..+. +..+ ....
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 131 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 131 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH
Confidence 344444444455555555554443321 0000 1234445555555566666666555555421 1011 1234
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 008708 414 FTTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 414 ~~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
+..+...+...|++++|...+++..
T Consensus 132 ~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 132 CWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4555555556666666666665554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.13 E-value=4.4e-06 Score=65.27 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=51.5
Q ss_pred cCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 109 QGDFNKAEKVLSFMNKKG--YAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAE 186 (557)
Q Consensus 109 ~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 186 (557)
.|++++|+..|++..+.+ -+.+..+|..+..+|...|++++|+..|++..+..+. +..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 466666777776666643 1223456666666677777777777777766665433 4566666666666777777777
Q ss_pred HHHHHhHh
Q 008708 187 EVFMTLLD 194 (557)
Q Consensus 187 ~~~~~~~~ 194 (557)
..+++++.
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666664
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.13 E-value=8.4e-05 Score=58.79 Aligned_cols=95 Identities=19% Similarity=0.094 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSV---VSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPS--ALTYQIIL 173 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~ll 173 (557)
+..+...+.+.|++++|...|+.+.+.. +.+. .++..+..++...|++++|+..|++.....+... ..++..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 4456667777777778877777777653 1222 4666777777777777777777777766543311 55566677
Q ss_pred HHHHHcCCHHHHHHHHHHhHh
Q 008708 174 KLFVEANKFKEAEEVFMTLLD 194 (557)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~ 194 (557)
.++...|++++|...|+.+++
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.13 E-value=7.6e-06 Score=81.47 Aligned_cols=120 Identities=18% Similarity=0.111 Sum_probs=78.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChh
Q 008708 349 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFD 428 (557)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 428 (557)
..+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|.+.++++.+.. +.+...|..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34556677777777777777653 4457777777777778888888888887777653 335677777777777888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH--HhhcCCHHHHHHHHHh
Q 008708 429 SAVVWYKEMESCGFPPDQKAKNILLSL--AKTADERNEANELLGN 471 (557)
Q Consensus 429 ~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 471 (557)
+|...++++.+.. +.+...+..+..+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 8888887777632 2233344444444 6677777777777773
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.9e-05 Score=76.82 Aligned_cols=134 Identities=11% Similarity=0.071 Sum_probs=95.6
Q ss_pred HHHcCCHHHHHHHHHHhHhccCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCC
Q 008708 176 FVEANKFKEAEEVFMTLLDEEKSPLKPD----QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETN 251 (557)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 251 (557)
+...|++++|+.++++.++.....+.++ ..+++.|+.+|...|++++|+.++++.+.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~------------------- 379 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD------------------- 379 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------------
Confidence 5578999999999999987655555554 36789999999999999999999977654
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CC-HHHHHHHHHHHHHcCCHHH
Q 008708 252 YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA-----GVR-PT-HKAYNILLDAFAISGMVDQ 324 (557)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~-~~-~~~~~~li~~~~~~g~~~~ 324 (557)
+++.......+-...+++.|...|...|++++|..++++.++. |.. |+ ..+...+..++...+.+++
T Consensus 380 ------i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 380 ------GYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp ------HHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 2333332222223567899999999999999999999887541 211 11 2244555566666777777
Q ss_pred HHHHHHHHHh
Q 008708 325 ARTVFKCMRR 334 (557)
Q Consensus 325 A~~~~~~~~~ 334 (557)
|..++.++.+
T Consensus 454 ae~~~~~~~~ 463 (490)
T 3n71_A 454 NEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.07 E-value=4.7e-05 Score=75.39 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008708 341 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420 (557)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 420 (557)
...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|+++++.. +.+...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4567778888888888888888888887764 5577888888888888888888888888888753 3345677777777
Q ss_pred HHhcCChhHHHH-HHHHHH
Q 008708 421 YGKNKDFDSAVV-WYKEME 438 (557)
Q Consensus 421 ~~~~g~~~~A~~-~~~~m~ 438 (557)
+.+.|+.++|.+ .++.|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 877777776653 444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.06 E-value=1.2e-05 Score=79.97 Aligned_cols=124 Identities=17% Similarity=0.034 Sum_probs=95.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 100 LMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA 179 (557)
Q Consensus 100 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 179 (557)
..+...+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|++.+++..+..+. +..++..+..+|...
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 344556678899999999999988864 446889999999999999999999999999987544 788899999999999
Q ss_pred CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 008708 180 NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM--YKKAGGYEKARKLFAL 229 (557)
Q Consensus 180 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 229 (557)
|++++|++.|+++++.. +.+...+..+..+ +.+.|++++|++.+++
T Consensus 88 g~~~eA~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 88 GKFRAALRDYETVVKVK----PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp TCHHHHHHHHHHHHHHS----TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999998743 2233345555555 8888999999999873
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.04 E-value=5.4e-05 Score=72.48 Aligned_cols=122 Identities=8% Similarity=0.020 Sum_probs=92.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh----------------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNK----------------KGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSG 161 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 161 (557)
.+..+...+.+.|++++|++.|++..+ .. +.+..+|..+..+|.+.|++++|+..+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 467788889999999999999998876 21 2245678888888888888888888888888764
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008708 162 PRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARK 225 (557)
Q Consensus 162 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 225 (557)
+. +...+..+..+|...|++++|++.|+++++.. +.+...+..+..++...++.+++.+
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~----P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA----PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 67778888888888888888888888887642 3456667777777777776666543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.2e-05 Score=77.74 Aligned_cols=135 Identities=10% Similarity=0.009 Sum_probs=98.8
Q ss_pred HHHhcCChHHHHHHHHHHHhC-----CCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC----HHHHH
Q 008708 140 AYGRGGRYKNAEAIFRRMQSS-----GPR-P-SALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD----QKMFH 208 (557)
Q Consensus 140 ~~~~~g~~~~A~~~~~~m~~~-----~~~-~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~ 208 (557)
.+...|++++|+.++++.++. |.. | ...+++.|..+|...|++++|+.+++++++.....+.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887652 211 2 346788999999999999999999999886432222232 36789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 008708 209 MMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREE 288 (557)
Q Consensus 209 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 288 (557)
.|...|...|++++|+.++++..+ +++.......+....+...+..++...+.++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~-------------------------i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYA-------------------------ILLVTHGPSHPITKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-------------------------HHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH-------------------------HHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999977654 3333332222222345566777888888999
Q ss_pred HHHHHHHHHHH
Q 008708 289 EALAVFEEMLD 299 (557)
Q Consensus 289 ~A~~~~~~~~~ 299 (557)
+|..+|..+++
T Consensus 453 ~ae~~~~~~~~ 463 (490)
T 3n71_A 453 QNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988865
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.02 E-value=7.9e-06 Score=63.79 Aligned_cols=85 Identities=8% Similarity=-0.019 Sum_probs=48.7
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 008708 354 ASDMEGAEKFFRRLKQDG--FVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAV 431 (557)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 431 (557)
.|++++|+..|++..+.+ -+.+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 455666666666666542 12234456666666666666666666666666542 334556666666666666666666
Q ss_pred HHHHHHHh
Q 008708 432 VWYKEMES 439 (557)
Q Consensus 432 ~~~~~m~~ 439 (557)
..+++.++
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666655
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00011 Score=61.11 Aligned_cols=65 Identities=20% Similarity=0.153 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
+...|..+..+|.+.|++++|+..+++.+... +.+...|..+..+|...|++++|...|++..+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34567777778888888888888888877764 556777888888888888888888888887764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.7e-05 Score=75.08 Aligned_cols=149 Identities=9% Similarity=0.052 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 307 KAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGY 386 (557)
Q Consensus 307 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 386 (557)
..+..+...+.+.|++++|...|++.... .|+... +...++..++...+. ...|..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 34555666666667777777777766543 222211 112222333222211 12677888889
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHH-HhhcCCHHH
Q 008708 387 AKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ-KAKNILLSL-AKTADERNE 464 (557)
Q Consensus 387 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~-~~~~g~~~~ 464 (557)
.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++++ +.|+. ..+..+... ....+..+.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988753 34678888889999999999999999998876 44544 344444444 334566777
Q ss_pred HHHHHHhcCCCCC
Q 008708 465 ANELLGNFNHPNN 477 (557)
Q Consensus 465 a~~~~~~~~~~~~ 477 (557)
+...++++....+
T Consensus 318 a~~~~~~~l~~~p 330 (338)
T 2if4_A 318 QKEMYKGIFKGKD 330 (338)
T ss_dssp -------------
T ss_pred HHHHHHHhhCCCC
Confidence 7788877765443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00013 Score=59.35 Aligned_cols=96 Identities=13% Similarity=0.086 Sum_probs=59.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-----CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLKQDGFV-P-----NV-----ITYGTLIKGYAKVNNLEKMMEIYDKMRVN-----GI 407 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p-----~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~ 407 (557)
+......+.+.|++++|+..|++.++.... | +. ..|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344445555666666666666665553211 0 22 26777777777777777777777777653 11
Q ss_pred CcC-HHHH----HHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 408 KPN-QTIF----TTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 408 ~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
.|+ ...| .....++...|++++|+..|++.++
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344 4566 6777777777777777777777764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00016 Score=58.67 Aligned_cols=65 Identities=15% Similarity=0.106 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHhc--cCCCCCC-CHHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 168 TYQIILKLFVEANKFKEAEEVFMTLLDE--EKSPLKP-DQKMF----HMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 168 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
.|..+..++.+.|++++|+..+++.++. ....+.| +...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666666667776666666666642 0001133 45667 8888888899999999999888875
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.93 E-value=3e-05 Score=73.43 Aligned_cols=129 Identities=11% Similarity=0.018 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHhcCChHHHHHHHHHHH
Q 008708 97 MDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVV------------------SHTALMEAYGRGGRYKNAEAIFRRMQ 158 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~------------------~~~~li~~~~~~g~~~~A~~~~~~m~ 158 (557)
..+..+...+.+.|++++|...|++..... |+.. +|..+..+|.+.|++++|+..+++.+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 446678888889999999999999987652 4433 66667777777777777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q 008708 159 SSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM-YKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 159 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~ 232 (557)
+..+ .+...|..+..+|...|++++|+..|+++++.. +.+..++..+... ....+..+.+...|..+..
T Consensus 258 ~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~----p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 258 TEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA----PDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp HHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6533 256666777777777777777777777775321 2233344444443 2233455555666655554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00076 Score=68.37 Aligned_cols=174 Identities=10% Similarity=-0.001 Sum_probs=136.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008708 286 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGM----------VDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS 355 (557)
Q Consensus 286 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 355 (557)
..++|++.++++.... +-+..+|+.-..++...|+ +++++..++.+.+.. +.+..+|+.-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3467889999888764 3455667766666666666 899999999998765 457888988888888889
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc--------
Q 008708 356 --DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN-NLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN-------- 424 (557)
Q Consensus 356 --~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-------- 424 (557)
+++++++.++++.+.. +-+...|+.-..++.+.| .++++++.+.++++.. +-|...|+....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 7799999999999876 668888998888888889 8999999999998764 45788888877776653
Q ss_pred ------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 008708 425 ------KDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNE 464 (557)
Q Consensus 425 ------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 464 (557)
+.++++++++++++... +-+...|..+...+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55789999999998742 4456788888888887776443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00056 Score=54.91 Aligned_cols=88 Identities=13% Similarity=-0.021 Sum_probs=40.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK 423 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 423 (557)
...|...+..++|.+.|++..+.| +...+..|...|.. .+++++|.++|++..+.| ++..+..+...|..
T Consensus 32 g~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 32 SLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYA 105 (138)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHC
Confidence 333333344444444444444432 33444444444444 445555555555554433 33444444444444
Q ss_pred ----cCChhHHHHHHHHHHhCC
Q 008708 424 ----NKDFDSAVVWYKEMESCG 441 (557)
Q Consensus 424 ----~g~~~~A~~~~~~m~~~~ 441 (557)
.+++++|..+|++..+.|
T Consensus 106 G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 106 GKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCcCHHHHHHHHHHHHHCC
Confidence 445555555555554433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00065 Score=54.52 Aligned_cols=110 Identities=10% Similarity=-0.035 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 008708 286 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN----ASDMEGAE 361 (557)
Q Consensus 286 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 361 (557)
++++|+.+|++..+.| .+... |...|...+.+++|..+|++..+.+ ++..+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 22322 5555555556666666666666653 55666666666666 56777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 008708 362 KFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNG 406 (557)
Q Consensus 362 ~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 406 (557)
..|++..+.| +...+..|...|.. .+++++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777766654 45566666666666 667777777777777655
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00098 Score=67.57 Aligned_cols=173 Identities=10% Similarity=0.004 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-
Q 008708 252 YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARR----------EEEALAVFEEMLDAGVRPTHKAYNILLDAFAISG- 320 (557)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 320 (557)
.++|.+.++.+....+. +..+|+.--.++...|+ +++++..++.+.+.. +-+..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 35566666666665433 56667776666666666 899999999998764 457778888888888888
Q ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---------
Q 008708 321 -MVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNAS-DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV--------- 389 (557)
Q Consensus 321 -~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------- 389 (557)
++++++..++++.+.. +.+..+|+.-..++.+.| .++++++.+.++.+.. +-|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 7799999999998865 457888988888888888 8999999999988875 66888888888777764
Q ss_pred -----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhH
Q 008708 390 -----NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 429 (557)
Q Consensus 390 -----g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 429 (557)
+.++++++.+.+++... +-+...|..+...+.+.++.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55789999999988753 4568889888888888777444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=5.6e-05 Score=61.29 Aligned_cols=99 Identities=10% Similarity=0.077 Sum_probs=65.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008708 353 NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNL----------EKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 422 (557)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~----------~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 422 (557)
+.+.+++|.+.++...+.. +.+...|..+..++...+++ ++|+..|++.++.. +.+...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 3445666666666666654 55666666666666666543 47777777777643 234667777777777
Q ss_pred hc-----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 423 KN-----------KDFDSAVVWYKEMESCGFPPDQKAKNILLSL 455 (557)
Q Consensus 423 ~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 455 (557)
.. |++++|+..|+++++ +.|+...|...+..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 65 478888888888887 56776655554443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.79 E-value=3.2e-05 Score=59.33 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 375 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 375 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+...+..+...+...|++++|...|++..+.. +.+...|..+..++.+.|++++|+..+++.++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34556666666777777777777777766542 33566666677777777777777777777766
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0002 Score=55.36 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 008708 114 KAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLL 193 (557)
Q Consensus 114 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 193 (557)
.|+..|++..+.. +.+...|..+...|...|++++|+..|++.....+. +...|..+..++...|++++|...|++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555543 334556666666666666666666666666554332 45555666666666666666666666655
Q ss_pred h
Q 008708 194 D 194 (557)
Q Consensus 194 ~ 194 (557)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0002 Score=54.66 Aligned_cols=93 Identities=10% Similarity=0.045 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-------HH
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-------QT 412 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-------~~ 412 (557)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34566677777777888888888888777654 556777777888888888888888888887764 333 44
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 008708 413 IFTTIMDAYGKNKDFDSAVVWYK 435 (557)
Q Consensus 413 ~~~~l~~~~~~~g~~~~A~~~~~ 435 (557)
.+..+..++...|+++.|...++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 55555566666666555544443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00042 Score=53.49 Aligned_cols=78 Identities=12% Similarity=0.037 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 360 AEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 360 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
|+..|++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555443 3455556666666666666666666666665532 23355556666666666666666666666554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00073 Score=49.24 Aligned_cols=60 Identities=23% Similarity=0.377 Sum_probs=24.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 379 YGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 379 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3334444444444444444444443321 12233444444444444444444444444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00069 Score=49.35 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
+...+..+...+...|++++|+..+++..... +.+...+..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45678888899999999999999999998864 5678889999999999999999999999998753 345777777777
Q ss_pred HHHhcC
Q 008708 420 AYGKNK 425 (557)
Q Consensus 420 ~~~~~g 425 (557)
++.+.|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 665543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00027 Score=57.24 Aligned_cols=94 Identities=12% Similarity=0.120 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--
Q 008708 322 VDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD----------MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV-- 389 (557)
Q Consensus 322 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-- 389 (557)
+++|+..++...+.. +.+...|..+..++...++ +++|+..|++.++.. +.+...|..+..+|...
T Consensus 18 feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 18 FEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcc
Confidence 444444444444332 2244444444444444433 347777777776654 44566677777777665
Q ss_pred ---------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 390 ---------NNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 390 ---------g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
|++++|++.|+++++. .|+...|...+.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 4788888888888874 566555544444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00091 Score=50.05 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 340 DICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 403 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (557)
+...+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555555555555555555555543 3344455555555555566666555555554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00069 Score=50.75 Aligned_cols=61 Identities=15% Similarity=0.069 Sum_probs=28.2
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 008708 96 EMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRM 157 (557)
Q Consensus 96 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 157 (557)
+..+..+..+|.+.|++++|+..|++..+.. +.+..+|..+..+|...|++++|++.|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444555555555554444432 123344444444444444444444444444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00081 Score=65.32 Aligned_cols=97 Identities=10% Similarity=-0.011 Sum_probs=74.3
Q ss_pred HcCCHHHHHHHHHHhHhccCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHH
Q 008708 178 EANKFKEAEEVFMTLLDEEKSPLKPD----QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYK 253 (557)
Q Consensus 178 ~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 253 (557)
..|++++|+.++++.++....-+.|+ ..+++.|..+|...|++++|+.++++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~--------------------- 368 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK--------------------- 368 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------------
Confidence 35789999999999987655555555 36789999999999999999999977664
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008708 254 EVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 299 (557)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 299 (557)
+++.......+-...+++.|...|...|++++|..++++.++
T Consensus 369 ----i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 369 ----PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp ----HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 233333222222345789999999999999999999998764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0025 Score=61.93 Aligned_cols=103 Identities=11% Similarity=-0.012 Sum_probs=78.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHhccCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc
Q 008708 172 ILKLFVEANKFKEAEEVFMTLLDEEKSPLKPD----QKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS 247 (557)
Q Consensus 172 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 247 (557)
.+..+.+.|++++|+.+++++++.....+.|+ ..+++.|+.+|...|++++|+.++++++.
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~--------------- 357 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME--------------- 357 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH---------------
Confidence 34556788999999999999997655555555 35788899999999999999999977664
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008708 248 FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLD 299 (557)
Q Consensus 248 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 299 (557)
+++.......+-...+++.|...|...|++++|..++++..+
T Consensus 358 ----------i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 358 ----------PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ----------HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 233333222222346788999999999999999999988754
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0023 Score=62.15 Aligned_cols=87 Identities=6% Similarity=-0.072 Sum_probs=62.7
Q ss_pred HcCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CCc-CHHHHHHHH
Q 008708 353 NASDMEGAEKFFRRLKQD---GFVP----NVITYGTLIKGYAKVNNLEKMMEIYDKMRV-----NG-IKP-NQTIFTTIM 418 (557)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~---~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~-~~p-~~~~~~~l~ 418 (557)
..|++++|+.++++.++. -+.| ...+++.|..+|...|++++|..++++.++ .| -.| ...+|+.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346788888888776542 1122 235688888888888999998888888774 12 122 256788888
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 008708 419 DAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 419 ~~~~~~g~~~~A~~~~~~m~~ 439 (557)
..|...|++++|..+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 889999999999998888764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0051 Score=59.79 Aligned_cols=92 Identities=7% Similarity=-0.032 Sum_probs=68.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CCc-CHHH
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQDG---FVP----NVITYGTLIKGYAKVNNLEKMMEIYDKMRV-----NG-IKP-NQTI 413 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~---~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~-~~p-~~~~ 413 (557)
+..+.+.|++++|+.++++.++.. +.| ...+++.|+.+|...|++++|+.+++++++ .| -.| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344567788888888888887531 122 245688888999999999999999988774 12 112 2567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 414 FTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 414 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
++.+...|...|++++|..+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88889999999999999999988764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.052 Score=50.59 Aligned_cols=136 Identities=12% Similarity=0.040 Sum_probs=85.9
Q ss_pred CHhhHHHHH--HHHHhcC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cC--ChHHH---HHHHHHHHh-C
Q 008708 95 NEMDFLMLI--TAYGKQG---DFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGR---GG--RYKNA---EAIFRRMQS-S 160 (557)
Q Consensus 95 ~~~~~~~l~--~~~~~~g---~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g--~~~~A---~~~~~~m~~-~ 160 (557)
+...|...+ ..+...+ ...+|..+|++..+.. |-....|..+..+|.. .+ ..... ...++.... .
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 344444444 3333333 3478899999988874 2234555554444431 11 11111 111221111 1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008708 161 GPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQ 236 (557)
Q Consensus 161 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 236 (557)
..+.++.+|..+...+...|++++|...+++++.. .|+...|..+...+.-.|++++|.+.|++....++.
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-----n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-----EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 13457888888877777789999999999999864 367777878888899999999999999988876543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0022 Score=47.59 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=35.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 382 LIKGYAKVNNLEKMMEIYDKMRVNGIKPNQT-IFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 382 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
.+..+...|++++|...|+++.+.. +.+.. .|..+..+|...|++++|...|++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445556666666666666666542 23445 666666666666666666666666665
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.024 Score=52.89 Aligned_cols=76 Identities=8% Similarity=-0.070 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 373 VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNIL 452 (557)
Q Consensus 373 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 452 (557)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++.. +.|...+|...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 6678888888777777899999999999988764 7777777888888889999999999988887 56777765543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0032 Score=46.68 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=46.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVV-SHTALMEAYGRGGRYKNAEAIFRRMQSSGPR 163 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 163 (557)
.....+.+.|++++|.+.|++..+.. +.+.. .|..+..+|...|++++|+..|++..+..+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 35566777888888888888877764 33566 7788888888888888888888888776443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.23 Score=52.82 Aligned_cols=101 Identities=13% Similarity=0.083 Sum_probs=69.2
Q ss_pred HHHHhcCChhHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 104 TAYGKQGDFNKAEK-VLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF 182 (557)
Q Consensus 104 ~~~~~~g~~~~A~~-~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 182 (557)
......+++++|.+ ++..+ |+......++..+.+.|.+++|+++.+ +.. .-+......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCH
Confidence 33445788888876 54221 112334777788888888888887653 221 113345678999
Q ss_pred HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 183 KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMA 231 (557)
Q Consensus 183 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 231 (557)
+.|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.
T Consensus 669 ~~A~~~~~~~---------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 669 TLARDLLTDE---------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHTTC---------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHhh---------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 9998886443 466789999999999999999999887764
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.019 Score=43.03 Aligned_cols=70 Identities=14% Similarity=0.057 Sum_probs=54.6
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 008708 93 DFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKG------YAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGP 162 (557)
Q Consensus 93 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 162 (557)
.++...+..|...+.+.|++..|...|+...+.- -.+....+..+..++.+.|+++.|+..+++..+..+
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 3567788899999999999999999998876531 123567788888888888888888888888877543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.023 Score=45.37 Aligned_cols=90 Identities=12% Similarity=0.149 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCChhHHH
Q 008708 357 MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVN---NLEKMMEIYDKMRVNGIKP--NQTIFTTIMDAYGKNKDFDSAV 431 (557)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 431 (557)
...+.+-|.+....+ +++..+...+..++++.+ ++++++.+|+...+.. .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 455666777666666 578888888888999888 6679999999988754 24 3455666677889999999999
Q ss_pred HHHHHHHhCCCCCCHHHHH
Q 008708 432 VWYKEMESCGFPPDQKAKN 450 (557)
Q Consensus 432 ~~~~~m~~~~~~p~~~~~~ 450 (557)
++++.+++ +.|+..--.
T Consensus 92 ~y~~~lL~--ieP~n~QA~ 108 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQNNQAK 108 (152)
T ss_dssp HHHHHHHH--HCTTCHHHH
T ss_pred HHHHHHHh--cCCCCHHHH
Confidence 99999998 677654333
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.079 Score=38.57 Aligned_cols=48 Identities=8% Similarity=-0.026 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 008708 112 FNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSS 160 (557)
Q Consensus 112 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 160 (557)
.++|..+|++.++.. +.++.++..+...+.+.|++++|+..|+++.+.
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444444432 223444444444444444444444444444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.032 Score=40.71 Aligned_cols=67 Identities=6% Similarity=-0.007 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 008708 373 VPNVITYGTLIKGYAKVNN---LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESC 440 (557)
Q Consensus 373 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 440 (557)
+.|...+..+..++...++ .++|..++++.++.. +-+......+...+.+.|++++|+..|+++++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566677777777765544 577777777777653 345667777777777777777777777777764
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.061 Score=40.20 Aligned_cols=70 Identities=11% Similarity=0.041 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 008708 375 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVN------GIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 446 (557)
Q Consensus 375 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 446 (557)
+..-+..++..+.+.|+++.|...|+.+.+. .-.+...++..+..++.+.|+++.|..+++++.+ +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 3444555666667777777777777666542 0123356667777777777777777777777766 34543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.55 Score=41.99 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhc-C
Q 008708 357 MEGAEKFFRRLKQDGFVPN---VITYGTLIKGYAKV-----NNLEKMMEIYDKMRVNGIKP--NQTIFTTIMDAYGKN-K 425 (557)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~-g 425 (557)
...|...+++..+. .|+ ...|..|+..|.+. |+.++|.+.|++.++. .| +..++..+.+.+++. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 56788888888875 465 56899999999994 9999999999999985 45 378888888888884 9
Q ss_pred ChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 008708 426 DFDSAVVWYKEMESCGFP--PDQKAKNILLSLAKTADERNEANELLGN 471 (557)
Q Consensus 426 ~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 471 (557)
+.++|.+.+++.+..... |+....+.+ .-++|..++.+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~ 294 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAH 294 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHH
Confidence 999999999999985544 443333332 34455555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.11 Score=55.31 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=75.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 275 ALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNA 354 (557)
Q Consensus 275 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 354 (557)
..++..+.+.|.++.|+++.+... .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 566666777777777776553211 1123345678888887775433 3667788888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 008708 355 SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWY 434 (557)
Q Consensus 355 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 434 (557)
|+++.|++.|.++.. |..+...|...|+.+...++-+.....|. ++....+|.+.|++++|++++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 888888888887642 22344444555666555555544444331 222333344455555555555
Q ss_pred HHH
Q 008708 435 KEM 437 (557)
Q Consensus 435 ~~m 437 (557)
.++
T Consensus 760 ~~~ 762 (814)
T 3mkq_A 760 IKS 762 (814)
T ss_dssp HHT
T ss_pred HHc
Confidence 443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.6 Score=38.26 Aligned_cols=130 Identities=15% Similarity=0.162 Sum_probs=90.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 008708 314 DAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLE 393 (557)
Q Consensus 314 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 393 (557)
......|+++.|.++.+.+. +...|..|.......|+++-|+..|.+... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 34457888888888877662 677899999999999999999998886542 334555667778887
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 394 KMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 394 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
...++-+.....| -++....++.-.|+++++.+++.+.-. +.-.+-.....|-.+.|.++.+.+.
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---------~~eA~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---------LPLAYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---------hHHHHHHHHHcCcHHHHHHHHHHhC
Confidence 7776666665554 134455566678999999988865532 1122233455788888888887763
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.057 Score=43.16 Aligned_cols=82 Identities=12% Similarity=0.048 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 113 NKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGG---RYKNAEAIFRRMQSSG-PRPSALTYQIILKLFVEANKFKEAEEV 188 (557)
Q Consensus 113 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~ 188 (557)
..+.+-|.+....| +++..+.-.+..++++.+ ++++++.+|+...+.+ +......+-.+.-++.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 44555555555544 256666666666666666 4456777777666643 111234444455566677777777777
Q ss_pred HHHhHhc
Q 008708 189 FMTLLDE 195 (557)
Q Consensus 189 ~~~~~~~ 195 (557)
++.+++.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7777653
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.54 Score=38.57 Aligned_cols=103 Identities=14% Similarity=0.143 Sum_probs=61.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 103 ITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKF 182 (557)
Q Consensus 103 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 182 (557)
.....+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34445667777777776654 2566777777777777777777777776521 33444455556666
Q ss_pred HHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008708 183 KEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFAL 229 (557)
Q Consensus 183 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 229 (557)
+.-.++-+.....+ -++.....+...|+++++.++|.+
T Consensus 77 e~L~kla~iA~~~g---------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE---------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHTT---------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc---------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66555544443211 134444455566777777776644
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.67 Score=35.71 Aligned_cols=65 Identities=17% Similarity=0.081 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 008708 377 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 442 (557)
Q Consensus 377 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 442 (557)
..+...++.+...|+-++..+++..+... .+|++...-.+..+|.+.|+..+|.+++.++-+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34444455555555555555555554322 245555555555566666666666666665555553
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.70 E-value=1.1 Score=34.55 Aligned_cols=141 Identities=10% Similarity=0.082 Sum_probs=89.9
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 317 AISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMM 396 (557)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 396 (557)
.-.|.+++..++..+.... .+..-||.+|--....-+-+-..++++.+-+ -.| ....|+.....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHH
Confidence 4457777777777776653 2555566666655555555555555554432 111 12345555555
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC
Q 008708 397 EIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPN 476 (557)
Q Consensus 397 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 476 (557)
..+-.+ .-+....+..++.+...|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++-+.+
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 544443 235566777777888888888888888886542 47788888888888888888888888888776665
Q ss_pred CCC
Q 008708 477 NEP 479 (557)
Q Consensus 477 ~~~ 479 (557)
...
T Consensus 156 ~kE 158 (172)
T 1wy6_A 156 EKE 158 (172)
T ss_dssp CHH
T ss_pred hHH
Confidence 543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.11 Score=46.31 Aligned_cols=88 Identities=14% Similarity=0.052 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHH
Q 008708 76 WNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGK-----QGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRG-GRYKN 149 (557)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~ 149 (557)
...|...++++.+..+--.+...|..|...|.+ .|+.++|.+.|++.++.+..-+..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 344445555555544211124455566666666 366666666666666553111355555555555553 66666
Q ss_pred HHHHHHHHHhCCCC
Q 008708 150 AEAIFRRMQSSGPR 163 (557)
Q Consensus 150 A~~~~~~m~~~~~~ 163 (557)
+.+.+++.+...+.
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 66666666655444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.22 E-value=0.37 Score=36.94 Aligned_cols=87 Identities=13% Similarity=0.133 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCChhHH
Q 008708 356 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEK---MMEIYDKMRVNGIKP--NQTIFTTIMDAYGKNKDFDSA 430 (557)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 430 (557)
....+.+-|.+....| .++..+--.+..++.+..+... ++.+++.+.+.+ .| .....-.+.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3344555555544444 3666666666667776665444 677777766543 23 223334455567777777777
Q ss_pred HHHHHHHHhCCCCCCH
Q 008708 431 VVWYKEMESCGFPPDQ 446 (557)
Q Consensus 431 ~~~~~~m~~~~~~p~~ 446 (557)
.++++.+++ +.|+.
T Consensus 94 ~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 94 LKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHHH--HCTTC
T ss_pred HHHHHHHHH--hCCCC
Confidence 777777776 45543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.74 E-value=0.56 Score=37.00 Aligned_cols=105 Identities=10% Similarity=0.104 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCCHH----HHHHHH---HHHHHcCCHHHHHHHHHHhHhc
Q 008708 129 PSVVSHTALMEAYGRGGRY------KNAEAIFRRMQSSGPRPSAL----TYQIIL---KLFVEANKFKEAEEVFMTLLDE 195 (557)
Q Consensus 129 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~~~~~----~~~~ll---~~~~~~g~~~~A~~~~~~~~~~ 195 (557)
.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|..+- ..+...++.++|.++|+.++..
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3556666666666555666 6666666666553 333311 111110 0123447888999999988764
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 008708 196 EKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQS 238 (557)
Q Consensus 196 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 238 (557)
...+ ..+|......-.++|++..|.+++......+..|.
T Consensus 90 -hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 90 -CKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp -CTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred -hHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 2233 77788888888889999999999998888765543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.31 E-value=0.48 Score=36.30 Aligned_cols=82 Identities=12% Similarity=0.030 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008708 113 NKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKN---AEAIFRRMQSSG-PRPSALTYQIILKLFVEANKFKEAEEV 188 (557)
Q Consensus 113 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~ 188 (557)
..+.+-|......| .++..+--.+..++++..+... ++.+++.+.+.+ +.......-.+.-++.+.|++++|.+.
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34444444444433 2555665556666666655444 666666665543 111223333444566666666666666
Q ss_pred HHHhHhc
Q 008708 189 FMTLLDE 195 (557)
Q Consensus 189 ~~~~~~~ 195 (557)
++.+++.
T Consensus 97 ~~~lL~~ 103 (126)
T 1nzn_A 97 VRGLLQT 103 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.27 E-value=0.97 Score=35.68 Aligned_cols=100 Identities=7% Similarity=0.070 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHHcCCHHHHHHHHHHHHHCC
Q 008708 340 DICSYTTMLSAYVNASDM------EGAEKFFRRLKQDGFVPNVI----TYGTLIK---GYAKVNNLEKMMEIYDKMRVNG 406 (557)
Q Consensus 340 ~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~----~~~~l~~---~~~~~g~~~~a~~~~~~m~~~~ 406 (557)
|..+|-..+...-+.|++ ++..++|++.... +||+.. .|-.+-- .+...++.++|.++|+.+++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 555555555555555665 5666666666553 344321 0111100 1123478888888888886542
Q ss_pred CCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 008708 407 IKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG 441 (557)
Q Consensus 407 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 441 (557)
-.- ...|.....--.+.|++..|.+++...+..+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 222 6777777777778888888888888888754
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.05 E-value=5.6 Score=41.17 Aligned_cols=126 Identities=16% Similarity=0.045 Sum_probs=81.4
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcC-ChHHHHHHHHHHHh-------CCCCCCHH-
Q 008708 100 LMLITAYGKQGD-FNKAEKVLSFMNKKGYAPSVVSH--TALMEAYGRGG-RYKNAEAIFRRMQS-------SGPRPSAL- 167 (557)
Q Consensus 100 ~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g-~~~~A~~~~~~m~~-------~~~~~~~~- 167 (557)
..|+..+...|+ ++.|..+|+++.... |....+ ..++..+...+ +--+|.+++.+..+ .-...+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 456666666677 588999999998863 433332 23333333332 22345555544432 11111211
Q ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 168 ---------TYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMA 231 (557)
Q Consensus 168 ---------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 231 (557)
....-...|...|+++.|+++-++++.. .+.+-.+|..|..+|...|+++.|+-.+..+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~----aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL----ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc----CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1222234567889999999999999853 35667899999999999999999999998874
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.80 E-value=2.3 Score=40.40 Aligned_cols=54 Identities=9% Similarity=0.176 Sum_probs=24.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 008708 383 IKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEM 437 (557)
Q Consensus 383 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 437 (557)
+..+...|+++++...+..+.... +-+...|..++.++.+.|+..+|++.|+.+
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444445555544444444321 233444445555555555555555444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.59 E-value=2.4 Score=40.28 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCcCHHHHH
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRV-----NGIKPNQTIFT 415 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~ 415 (557)
...++..+...|++++|...+..+.... +.+...+..++.++.+.|+..+|++.|+...+ .|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4456778888999999999999888764 77888999999999999999999999988763 48888776543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=89.02 E-value=1.1e-05 Score=76.37 Aligned_cols=260 Identities=11% Similarity=0.113 Sum_probs=159.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 008708 95 NEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILK 174 (557)
Q Consensus 95 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 174 (557)
.+.+|..|..+..+.|++.+|++-|-+ . .|+..|..+|.+..+.|.+++-+..+...++..- ++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk---A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK---A---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC---C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh---C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 467889999999999999999887622 2 2666789999999999999999998876665533 3344457888
Q ss_pred HHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcc---cCC
Q 008708 175 LFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSF---ETN 251 (557)
Q Consensus 175 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~ 251 (557)
+|++.++..+-++++ ..|+..-...+++-|...|.++.|.-+|..+... ..|-.. .++
T Consensus 125 ayAk~~rL~elEefl----------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~---------akLAstLV~L~~ 185 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI----------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF---------GRLASTLVHLGE 185 (624)
T ss_dssp HHHTSCSSSTTTSTT----------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC---------TTTSSSSSSCSG
T ss_pred HHHhhCcHHHHHHHH----------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccH---------HHHHHHHHHHHH
Confidence 999999977654432 2466666677889999999999998877544321 111111 122
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008708 252 YKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKC 331 (557)
Q Consensus 252 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 331 (557)
+..|.+. .++ .-++.||..+-.+|...+.+..|.-.--.++-. ++ -...++..|...|.+++-+.+++.
T Consensus 186 yq~AVda---ArK---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 186 YQAAVDG---ARK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp GGSSTTT---TTT---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHH
T ss_pred HHHHHHH---HHh---cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 2222211 111 125567777777777777776655443333311 11 123355667777777777777776
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008708 332 MRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQD-GFVPNVITYGTLIKGYAKVNNLEKMMEIYDK 401 (557)
Q Consensus 332 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 401 (557)
-.... ......|+-|.-.|++- ++++..+.++..... +++ -++++|.+...|.++.-+|..
T Consensus 255 glglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNip-------KviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 255 ALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIP-------KVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp HTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCT-------TTHHHHTTTTCHHHHHHHHHH
T ss_pred HhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHH-------HHHHHHHHHhhHHHHHHHHhc
Confidence 66321 34566666666666654 444444444432221 222 245556555566665555543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.94 E-value=17 Score=35.06 Aligned_cols=94 Identities=6% Similarity=0.082 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCcC--HHH
Q 008708 345 TTMLSAYVNASDMEGAEKFFRRLKQD--GFVPN---VITYGTLIKGYAKVNNLEKMMEIYDKMRV----NGIKPN--QTI 413 (557)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~p~--~~~ 413 (557)
..|...|...|++.+|.+++..+... +..+. ...+...+..|...+++.+|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34555566666666666666655421 11111 12344455556666666666666655431 111122 233
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 008708 414 FTTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 414 ~~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
|...+..+...+++.+|.+.|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4455555555666666655555543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.89 E-value=7.5 Score=42.97 Aligned_cols=187 Identities=10% Similarity=0.028 Sum_probs=116.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----C---------------
Q 008708 276 LLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD----R--------------- 336 (557)
Q Consensus 276 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~--------------- 336 (557)
.++..+.+.+..+.+.++..-. +.++...-.+..+|...|++++|...|.+.... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 4555566667776666544322 335555556677888999999999999765211 0
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 008708 337 ---CSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNV----ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP 409 (557)
Q Consensus 337 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 409 (557)
...-..-|..++..+.+.+.++.+.++-+...+...+.+. ..|..+..++...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0112235677888888899999998888877654222222 2577888999999999999999888876533
Q ss_pred CHHHHHHHHHHHHhcCChhH------------HHHHHHHH-HhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 008708 410 NQTIFTTIMDAYGKNKDFDS------------AVVWYKEM-ESC-GFPPDQKAKNILLSLAKTADERNEANELL 469 (557)
Q Consensus 410 ~~~~~~~l~~~~~~~g~~~~------------A~~~~~~m-~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 469 (557)
-...+..++..++..|..+. ..+++..- ... .....+..|..|.......|++..|-.++
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vm 1043 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAII 1043 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHH
Confidence 35667777776666655443 33333221 111 11222345666666666667766654443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.60 E-value=1.9 Score=34.78 Aligned_cols=121 Identities=9% Similarity=0.037 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCH
Q 008708 97 MDFLMLITAYGKQGDFNKAEKVLSFMNKKG-YAPSV-------VSHTALMEAYGRGGRYKNAEAIFRRMQSSG--PRPSA 166 (557)
Q Consensus 97 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~ 166 (557)
..+..-+..+...|.++.|+-+.+.+.... ..|++ .++..+..++...|++..|...|++.+... +.-+.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445566777777777777777766644321 12221 245556667777777777777777754321 11111
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008708 167 LTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 167 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 233 (557)
.+...+. . ...... ......+...-.-+..+|.+.+++++|+.+++.+..+
T Consensus 101 s~~~~~~-~---~ss~p~------------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 101 KVRPSTG-N---SASTPQ------------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp --------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred Ccccccc-c---cCCCcc------------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1111110 0 000000 0012344566666888999999999999998876543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.73 E-value=9.7 Score=39.43 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=39.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008708 349 SAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKM 402 (557)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 402 (557)
..|...|+++-|+++-++....- |-+..+|..|..+|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34566788888888888877753 556778888888888888888888777765
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.51 E-value=2.6 Score=30.52 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=21.9
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 008708 396 MEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME 438 (557)
Q Consensus 396 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 438 (557)
.+-++.+...++.|++.+..+.+.+|.|.+++..|.++++-..
T Consensus 30 rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 30 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444455555555555555555555555555555444
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.89 E-value=3.7 Score=29.76 Aligned_cols=63 Identities=14% Similarity=0.280 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 356 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
+.-+..+-++.+....+.|++....+.+.+|.+..++..|.++|+-.+.+ +.+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34455666666666667777777777777777777777777777777643 2233344555543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=86.17 E-value=9.9 Score=29.26 Aligned_cols=72 Identities=7% Similarity=0.009 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 008708 373 VPNVITYGTLIKGYAKVNN---LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 446 (557)
Q Consensus 373 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 446 (557)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+..-....+-.+.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 5666665556666666654 345677777766543111244455556677778888888888877776 45654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.06 E-value=1.6 Score=35.11 Aligned_cols=126 Identities=10% Similarity=0.052 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCcCHHH
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLKQD-GFVPNV-------ITYGTLIKGYAKVNNLEKMMEIYDKMRVN--GIKPNQTI 413 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~ 413 (557)
+-.-+..+...|.++.|+-+...+... +..|+. .++..+.+++...|++.+|...|++.+.. .+.-+...
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 334456677778888887777765442 123442 35666777888888888888888886532 11111111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCCCcc
Q 008708 414 FTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPNNEPGIN 482 (557)
Q Consensus 414 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 482 (557)
...+.. ....+. .....++...-.-+..++.+.+++++|...++.+......|.++
T Consensus 103 ~~~~~~---~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvn 158 (167)
T 3ffl_A 103 RPSTGN---SASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKIN 158 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHH
T ss_pred cccccc---cCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHH
Confidence 111100 000000 01122333444456778888888888888888775444444443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=85.65 E-value=7.6 Score=29.88 Aligned_cols=70 Identities=10% Similarity=-0.040 Sum_probs=55.6
Q ss_pred CCCcCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCC
Q 008708 406 GIKPNQTIFTTIMDAYGKNKDF---DSAVVWYKEMESCGFPP--DQKAKNILLSLAKTADERNEANELLGNFNHPNN 477 (557)
Q Consensus 406 ~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 477 (557)
+-.|+..+--.+.+++.+..+. .+++.+++++.+.+ | ....+..+.-++.+.|++++|+++.+.+.+..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 3467888888888888887765 46888999988744 4 245777888899999999999999999876655
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=84.95 E-value=12 Score=29.19 Aligned_cols=72 Identities=7% Similarity=0.009 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 008708 373 VPNVITYGTLIKGYAKVNN---LEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQ 446 (557)
Q Consensus 373 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 446 (557)
.|+..+--.+..++.+..+ ..+++.+++.+...+..-.....-.+.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 5677766667777777665 456777887777643111234444555677888888888888888887 56654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.78 E-value=13 Score=41.12 Aligned_cols=146 Identities=10% Similarity=0.031 Sum_probs=100.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------------
Q 008708 310 NILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGF----------------- 372 (557)
Q Consensus 310 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------------- 372 (557)
..++..+...+..+-+..+..-. +.++..--.+..+|...|++++|...|++... |+
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 34566677777777776654333 23555556677889999999999999987532 11
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 008708 373 ------VPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN----QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 442 (557)
Q Consensus 373 ------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 442 (557)
..-..-|..++..+.+.+.++.+.++-+.+++..-+.+ ...|..+..++...|++++|...+-.+....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~- 968 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP- 968 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-
Confidence 01123477888899999999999998888775421222 2368889999999999999999998887643
Q ss_pred CCCHHHHHHHHHHHhhcCCHH
Q 008708 443 PPDQKAKNILLSLAKTADERN 463 (557)
Q Consensus 443 ~p~~~~~~~l~~~~~~~g~~~ 463 (557)
-....+..|+..++..|..+
T Consensus 969 -~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 969 -LKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp -SCHHHHHHHHHHHHHHCCHH
T ss_pred -HHHHHHHHHHHHHHhCCChh
Confidence 33566777776555544433
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=83.80 E-value=9.2 Score=27.59 Aligned_cols=84 Identities=20% Similarity=0.201 Sum_probs=58.3
Q ss_pred HhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 008708 69 RLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYK 148 (557)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 148 (557)
........++|--|-+|+...+. ...+--.-+..+...|++++|..+.+.+. .||...|-.|... +.|..+
T Consensus 16 ~gTG~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s 86 (116)
T 2p58_C 16 IGTGNHYHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGS 86 (116)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHH
T ss_pred HHccchHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHH
Confidence 34556678889999999988762 22333334556678899999988876654 5788888776544 677777
Q ss_pred HHHHHHHHHHhCC
Q 008708 149 NAEAIFRRMQSSG 161 (557)
Q Consensus 149 ~A~~~~~~m~~~~ 161 (557)
++...+.++...|
T Consensus 87 ~le~rL~~la~sg 99 (116)
T 2p58_C 87 ALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCC
Confidence 7777776776654
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.43 E-value=8.8 Score=27.63 Aligned_cols=84 Identities=18% Similarity=0.114 Sum_probs=59.1
Q ss_pred HhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 008708 69 RLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYK 148 (557)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 148 (557)
........++|--|-+|+...+. ...+--.-+..+...|++++|..+.+.+. .||...|-.|... +.|..+
T Consensus 15 ~gTG~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s 85 (115)
T 2uwj_G 15 AGSGQHCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGA 85 (115)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHH
T ss_pred HHccchHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHH
Confidence 34556678889999999988762 22333334556778899999988776554 5788888776544 678888
Q ss_pred HHHHHHHHHHhCC
Q 008708 149 NAEAIFRRMQSSG 161 (557)
Q Consensus 149 ~A~~~~~~m~~~~ 161 (557)
++...+.++...|
T Consensus 86 ~le~rL~~la~sg 98 (115)
T 2uwj_G 86 ALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhCC
Confidence 8887777776664
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.94 E-value=13 Score=28.64 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 394 KMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILL 453 (557)
Q Consensus 394 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 453 (557)
+..+-++.+...++.|++.+....+.+|.+.+++..|.++|+-...+ ..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34444555555667777777777777777777777777777776543 233344555554
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.63 E-value=8.1 Score=29.69 Aligned_cols=62 Identities=13% Similarity=0.260 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 357 MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
.-+..+-++.+...++.|++......+.+|.+..++..|.++|+-.+.+ +.+...+|..++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3345555666666667778888777888888888888888887777643 2333445555543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.61 E-value=42 Score=32.31 Aligned_cols=102 Identities=8% Similarity=0.024 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 008708 206 MFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKAR 285 (557)
Q Consensus 206 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 285 (557)
....|...|...|++.+|..++..+...-...+. ... -...+...+..|...+
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~--------------~~~-------------kve~~l~q~rl~l~~~ 191 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSME--------------MSE-------------KIQFILEQMELSILKG 191 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC--------------HHH-------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc--------------HHH-------------HHHHHHHHHHHHHHCC
Confidence 3456778888888888888888887632000000 000 1234455666777888
Q ss_pred CHHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008708 286 REEEALAVFEEMLD----AGVRPTH--KAYNILLDAFAISGMVDQARTVFKCMRR 334 (557)
Q Consensus 286 ~~~~A~~~~~~~~~----~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~ 334 (557)
++.+|..++.++.. ....|+. ..+...+..+...+++.+|.+.|.++..
T Consensus 192 d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 192 DYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 88888887777532 1112221 2455566667777888888777776653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 557 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-04 | |
| d1qkla_ | 127 | a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 1e-04
Identities = 53/343 (15%), Positives = 108/343 (31%), Gaps = 19/343 (5%)
Query: 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAY-GRGGRYKNAEAIFRRM 157
L+L + + + +++ ++ + L EAY G YK + +
Sbjct: 36 LLLLSSIHFQCRRLDRSAHF--------STLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87
Query: 158 QSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKA 217
+ I + + A + PD + KA
Sbjct: 88 EHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA 147
Query: 218 GGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRA-GLQPDVV-SYA 275
G + K L A V +++L E+ ++A L P+ + +Y
Sbjct: 148 LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYI 207
Query: 276 LLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVF-KCMRR 334
L N +AR + A+A + L + L + G++D A + + +
Sbjct: 208 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
Query: 335 DRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEK 394
PD +Y + +A + AE + + L + N+E+
Sbjct: 267 QPHFPD--AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN-NLANIKREQGNIEE 323
Query: 395 MMEIYDKMRVNGIKPNQ-TIFTTIMDAYGKNKDFDSAVVWYKE 436
+ +Y K + P + + + A++ YKE
Sbjct: 324 AVRLYRK--ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 35/237 (14%), Positives = 84/237 (35%), Gaps = 16/237 (6%)
Query: 85 WLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRG 144
+L+ + + L + QG+ A + ++ L
Sbjct: 158 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEA 216
Query: 145 GRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQ 204
+ A A + R S P A+ + + ++ E A + + ++ L+P
Sbjct: 217 RIFDRAVAAYLRALSLSPNH-AVVHGNLACVYYEQGLIDLAIDTYRRAIE-----LQPHF 270
Query: 205 KMFHMMI-YMYKKAGGYEKARKLF--ALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQ 261
+ + K+ G +A + AL S ++ + N +E ++Y +
Sbjct: 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330
Query: 262 MQRAGLQPD-VVSYALLINAYGKARREEEALAVFEEMLDAGVRPTH-KAYNILLDAF 316
+ P+ +++ L + + + +EAL ++E + + PT AY+ + +
Sbjct: 331 ALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTL 383
|
| >d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]} Length = 127 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: RPB6/omega subunit-like superfamily: RPB6/omega subunit-like family: RPB6 domain: RPB6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.9 bits (83), Expect = 0.003
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 489 DEEDDDDDDDEDDDDNIYHDGDGDGDGDDNEDDAE 523
D ED+ D DD DD + D + ++ +++ E
Sbjct: 3 DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVE 37
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 557 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.32 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.28 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.23 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.22 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.15 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.1 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.09 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.08 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.05 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.03 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.79 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.69 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.61 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.58 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.58 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.51 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.5 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.49 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.45 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.41 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.38 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.36 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.32 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.29 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.21 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.18 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.13 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.09 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.08 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.03 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.0 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.96 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.96 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.93 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.92 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.9 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.84 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.81 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.71 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.66 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.6 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.59 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.57 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.51 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.51 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.31 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.22 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.19 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.7 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.53 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.29 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.65 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.12 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.97 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.64 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.46 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 89.82 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.43 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.45 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.4e-21 Score=186.05 Aligned_cols=360 Identities=13% Similarity=0.056 Sum_probs=160.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 008708 104 TAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFK 183 (557)
Q Consensus 104 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 183 (557)
..+.+.|++++|.+.|+++.+.. |.+..++..+..+|.+.|++++|+..|++.++..+. +..++..+..++.+.|+++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcccc
Confidence 33444455555555555444432 223444444444555555555555555544443222 3444444444455555555
Q ss_pred HHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhc--ccCCHHHHHHHHHH
Q 008708 184 EAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMS--FETNYKEVSKIYDQ 261 (557)
Q Consensus 184 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~a~~~~~~ 261 (557)
+|...+....+.. +.+..............+....+........................ ..+....+...+..
T Consensus 85 ~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 85 EAIEHYRHALRLK----PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHH
Confidence 5555554444321 22233333333333333333333333333333222222222111111 12333333333333
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 008708 262 MQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDI 341 (557)
Q Consensus 262 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 341 (557)
..... +.+...+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++|...+++..... +.+.
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 237 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence 33322 1133444444555555555555555555544432 2233444455555555555555555555544332 2234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008708 342 CSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAY 421 (557)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 421 (557)
..+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++...... +.+...+..+..++
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHH
Confidence 444445555555555555555555554442 3344445555555555555555555555544431 33444455555555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC
Q 008708 422 GKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHP 475 (557)
Q Consensus 422 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 475 (557)
...|++++|+..+++.++.. |-+..++..+..++...|++++|...++++.+.
T Consensus 316 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555555555555554421 122334444555555555555555555554433
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.2e-20 Score=182.02 Aligned_cols=377 Identities=14% Similarity=0.103 Sum_probs=307.5
Q ss_pred HhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 008708 69 RLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYK 148 (557)
Q Consensus 69 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 148 (557)
.....|+++.|.++++.+.+..+ -++..+..+..+|.+.|++++|...|+++.+.. |.+..+|..+..+|...|+++
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence 34567899999999999988753 467888999999999999999999999998875 446889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008708 149 NAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFA 228 (557)
Q Consensus 149 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 228 (557)
+|+..+.......+. +..............+....+.......... ..................+....+...+.
T Consensus 85 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQY----NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH----CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred ccccccccccccccc-ccccccccccccccccccccccccccccccc----ccccccccccccccccccchhhhhHHHHH
Confidence 999999999886544 5555555666666666666666666655432 23445556666777778888889888888
Q ss_pred HHHHcCCCCCHHHHHHH---hcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 008708 229 LMAERGVQQSTVTYNSL---MSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPT 305 (557)
Q Consensus 229 ~~~~~~~~~~~~~~~~l---l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 305 (557)
........ ....+..+ ....+++++|...++...+..+. +...+..+...+...|++++|+..+.+..... +.+
T Consensus 160 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 236 (388)
T d1w3ba_ 160 KAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhH
Confidence 87765422 22222222 22368899999999998876433 67789999999999999999999999998764 456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 008708 306 HKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKG 385 (557)
Q Consensus 306 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 385 (557)
...+..+...+.+.|++++|...|++..+.. +.+..++..+...+...|++++|.+.++...... +.+...+..+...
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHH
Confidence 7788889999999999999999999998764 4467889999999999999999999999988764 7788999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCC
Q 008708 386 YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP-DQKAKNILLSLAKTADE 461 (557)
Q Consensus 386 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~ 461 (557)
+...|++++|++.|++.++.. +.+..++..+..+|.+.|++++|...|+++++ +.| +...+..+..++.+.||
T Consensus 315 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999998753 34578899999999999999999999999998 456 46789999999988775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=3.8e-13 Score=125.61 Aligned_cols=147 Identities=16% Similarity=0.049 Sum_probs=95.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 282 GKARREEEALAVFEEMLDAGV-RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGA 360 (557)
Q Consensus 282 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (557)
...+.+.+|...|.+..+... .++..++..+...+...|++++|+..|++..... +.+..+|..+...|...|++++|
T Consensus 147 ~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A 225 (323)
T d1fcha_ 147 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA 225 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhH
Confidence 344555666666666654321 2345666777777777788888888877776543 33566777777788888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----------CCCcCHHHHHHHHHHHHhcCChhHH
Q 008708 361 EKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN----------GIKPNQTIFTTIMDAYGKNKDFDSA 430 (557)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----------~~~p~~~~~~~l~~~~~~~g~~~~A 430 (557)
.+.|++..+.. +-+..++..++.+|.+.|++++|+..|++.++. ........|..+-.++...|+.+.+
T Consensus 226 ~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 226 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88888777653 446677777888888888888888888877652 0111123445555555555555544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.2e-13 Score=127.17 Aligned_cols=272 Identities=12% Similarity=0.050 Sum_probs=185.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 100 LMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA 179 (557)
Q Consensus 100 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 179 (557)
......+.+.|++++|...|+++.+.. |.+..+|..+..++...|++++|+..|.+..+..+. +...+..+...+...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccc
Confidence 356777888888888888888888774 346778888888888888888888888888776543 677788888888888
Q ss_pred CCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHH
Q 008708 180 NKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIY 259 (557)
Q Consensus 180 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~ 259 (557)
|++++|.+.++.++... |+.......................... ....+.+.++...+
T Consensus 101 ~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYT-----PAYAHLVTPAEEGAGGAGLGPSKRILGS----------------LLSDSLFLEVKELF 159 (323)
T ss_dssp TCHHHHHHHHHHHHHTS-----TTTGGGCC---------------CTTHH----------------HHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhc-----cchHHHHHhhhhhhhhcccccchhhHHH----------------HHHhhHHHHHHHHH
Confidence 88888888888887532 1110000000000000000000000000 00112345555666
Q ss_pred HHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 008708 260 DQMQRAGL-QPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCS 338 (557)
Q Consensus 260 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 338 (557)
....+..+ .++...+..+...+...|++++|+..|++..... +-+..+|..+..+|...|++++|...|++..+.. +
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 237 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-P 237 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-h
Confidence 65554432 2456778888999999999999999999998764 4467789999999999999999999999988753 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----------CCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 339 PDICSYTTMLSAYVNASDMEGAEKFFRRLKQDG----------FVPNVITYGTLIKGYAKVNNLEKMM 396 (557)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------~~p~~~~~~~l~~~~~~~g~~~~a~ 396 (557)
-+..+|..+..+|.+.|++++|+..|++.++.. .......|..+-.++...|+.+.+.
T Consensus 238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 467889999999999999999999999987631 1122334556666666666665443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=1.9e-09 Score=101.10 Aligned_cols=305 Identities=9% Similarity=0.017 Sum_probs=190.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCC--CCCCHHHHHHH
Q 008708 137 LMEAYGRGGRYKNAEAIFRRMQSSGPRPS----ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSP--LKPDQKMFHMM 210 (557)
Q Consensus 137 li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l 210 (557)
....+...|++++|++++++.....+..+ ..++..+..++...|++++|...|+++++..... .......+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34555667777777777777665433322 2345556667777777777777777765421111 01112345566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 008708 211 IYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEA 290 (557)
Q Consensus 211 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 290 (557)
...+...|++..+...+...... ...............+..+...+...|+++.+
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~-------------------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a 152 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQL-------------------------INEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 152 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-------------------------HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------------------hHhcccchhhHHHHHHHHHHHHHHHhcchhhh
Confidence 77788888888888887665532 11000000011123455667788888999999
Q ss_pred HHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHHcCCHHHH
Q 008708 291 LAVFEEMLDAG----VRPTHKAYNILLDAFAISGMVDQARTVFKCMRRD--RCSPD----ICSYTTMLSAYVNASDMEGA 360 (557)
Q Consensus 291 ~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~A 360 (557)
...+....... ......++......+...++...+...+.+.... ..... ...+..+...+...|++++|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 232 (366)
T d1hz4a_ 153 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 232 (366)
T ss_dssp HHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHH
Confidence 98888876542 1223445666677778888888888887765432 11111 23456666778888999999
Q ss_pred HHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCcC-HHHHHHHHHHHHhcCChhHHHH
Q 008708 361 EKFFRRLKQDGFV---PNVITYGTLIKGYAKVNNLEKMMEIYDKMRV----NGIKPN-QTIFTTIMDAYGKNKDFDSAVV 432 (557)
Q Consensus 361 ~~~~~~m~~~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 432 (557)
...++........ .....+..+..++...|++++|...++++.. .+..|+ ...+..+..+|.+.|++++|.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 312 (366)
T d1hz4a_ 233 ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 312 (366)
T ss_dssp HHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 9998877654322 2244566788889999999999999988763 243443 4567778888999999999999
Q ss_pred HHHHHHh----CCCCC----CHHHHHHHHHHHhhcCCHHHHH
Q 008708 433 WYKEMES----CGFPP----DQKAKNILLSLAKTADERNEAN 466 (557)
Q Consensus 433 ~~~~m~~----~~~~p----~~~~~~~l~~~~~~~g~~~~a~ 466 (557)
.+++.++ .|... ....+..++..+...++.+++.
T Consensus 313 ~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e 354 (366)
T d1hz4a_ 313 VLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 354 (366)
T ss_dssp HHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 9988764 22211 1233444555566666665554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=8.2e-09 Score=96.59 Aligned_cols=306 Identities=9% Similarity=0.023 Sum_probs=204.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPS----VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-PS----ALTY 169 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~ 169 (557)
.......+...|++++|++++++..+.....+ ..++..+..+|...|++++|+..|++....... ++ ..++
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 34456778889999999999999887632111 346778889999999999999999987653211 11 3455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhccC---CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008708 170 QIILKLFVEANKFKEAEEVFMTLLDEEK---SPLKP-DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSL 245 (557)
Q Consensus 170 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 245 (557)
..+...+...|++..+...+...+.... ....+ ....+..+...+...|+++.+...+...........
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~------- 167 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ------- 167 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhh-------
Confidence 6667788899999999999888764211 11111 124566678889999999999999988776422111
Q ss_pred hcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHHc
Q 008708 246 MSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDA--GVRPT----HKAYNILLDAFAIS 319 (557)
Q Consensus 246 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~ 319 (557)
.......+......+...++...+...+.+.... ..... ...+..+...+...
T Consensus 168 ---------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T d1hz4a_ 168 ---------------------PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 226 (366)
T ss_dssp ---------------------GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhc
Confidence 1123345556666777788888888777765432 11111 22455566677888
Q ss_pred CCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHHcCC
Q 008708 320 GMVDQARTVFKCMRRDRCS---PDICSYTTMLSAYVNASDMEGAEKFFRRLKQ----DGFVPN-VITYGTLIKGYAKVNN 391 (557)
Q Consensus 320 g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~ 391 (557)
|+++.|...+......... .....+..+..++...|++++|...++.+.. .+..|+ ..++..+..+|.+.|+
T Consensus 227 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 306 (366)
T d1hz4a_ 227 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 306 (366)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCC
Confidence 9999999888877654322 2245566778888999999999999888753 233333 4567888899999999
Q ss_pred HHHHHHHHHHHHHC----CCCc----CHHHHHHHHHHHHhcCChhHHHH
Q 008708 392 LEKMMEIYDKMRVN----GIKP----NQTIFTTIMDAYGKNKDFDSAVV 432 (557)
Q Consensus 392 ~~~a~~~~~~m~~~----~~~p----~~~~~~~l~~~~~~~g~~~~A~~ 432 (557)
+++|.+.+++..+. |... ....+..++..+...++.+++.+
T Consensus 307 ~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 307 KSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 99999999887642 2111 12234444555556666665543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=5.2e-09 Score=96.12 Aligned_cols=130 Identities=5% Similarity=0.007 Sum_probs=82.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 98 DFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR-YKNAEAIFRRMQSSGPRPSALTYQIILKLF 176 (557)
Q Consensus 98 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 176 (557)
.|+.+...+.+.+.+++|+++++++++.. |-+..+|+....++...|+ +++|+..+++..+..+. +..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHH
Confidence 44555666666677777777777776654 3356666666666666553 67777777766665443 566666666666
Q ss_pred HHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008708 177 VEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 177 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 233 (557)
.+.|++++|+..+.++++.. +.+..+|..++.++...|++++|+..++++.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d----p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~ 175 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD----AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 175 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHhhhhhhh----hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66777777777776666532 345566666666666666666666666666554
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=5.2e-09 Score=96.11 Aligned_cols=141 Identities=5% Similarity=-0.035 Sum_probs=91.6
Q ss_pred hhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 008708 71 KQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGD-FNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKN 149 (557)
Q Consensus 71 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 149 (557)
...+.+++|+++++.+++..+ -+...|+....++...|+ +++|+..++...+.. +.+..+|+.+...+.+.|++++
T Consensus 54 ~~~e~~~~Al~~~~~ai~lnP--~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~~l~~~~e 130 (315)
T d2h6fa1 54 QRDERSERAFKLTRDAIELNA--ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQ 130 (315)
T ss_dssp HHTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTT
T ss_pred HhCCchHHHHHHHHHHHHHCC--CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHHhhccHHH
Confidence 444566777777777776652 345566666666666653 677777777766654 3356677777777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCC
Q 008708 150 AEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGG 219 (557)
Q Consensus 150 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 219 (557)
|++.++++.+..+. +..+|..+...+...|++++|++.++++++.. +.+...|+.+..++.+.+.
T Consensus 131 Al~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~----p~n~~a~~~r~~~l~~~~~ 195 (315)
T d2h6fa1 131 ELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED----VRNNSVWNQRYFVISNTTG 195 (315)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC----CccHHHHHHHHHHHHHccc
Confidence 77777777665443 66677777777777777777777777776532 3455666666555555443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.15 E-value=1.1e-08 Score=93.66 Aligned_cols=187 Identities=10% Similarity=0.114 Sum_probs=147.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 285 RREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFF 364 (557)
Q Consensus 285 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 364 (557)
+..++|..+|++.++...+.+...|...+..+...|+++.|..+|+++.+.........|...+..+.+.|+++.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34578888999888765556677888888888999999999999999987643434567889999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-C
Q 008708 365 RRLKQDGFVPNVITYGTLIKG-YAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCG-F 442 (557)
Q Consensus 365 ~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~ 442 (557)
+++.+.+ +.+...|...+.. +...|+.+.|..+|+.+.+. .+.+...|..++..+.+.|+++.|..+|++.++.. .
T Consensus 158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 9998875 4455555544443 33468899999999999875 35568889999999999999999999999988743 3
Q ss_pred CCC--HHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 443 PPD--QKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 443 ~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
.|+ ...|...+..-...|+.+.+..+.+++.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333 3578888888888999999999988764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=1.3e-08 Score=90.74 Aligned_cols=152 Identities=11% Similarity=-0.035 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHHhcCCCC--CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 008708 76 WNVVSEVLEWLRIQSWWD--FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAI 153 (557)
Q Consensus 76 ~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 153 (557)
.+.++.-++.+....... -....|..+..+|.+.|++++|++.|++..+.. |.++.+|+.+..+|.+.|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 344444445554433211 123467788999999999999999999998874 45788999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008708 154 FRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 154 ~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 233 (557)
|+++.+..+. +..++..+..++...|++++|.+.|+..++.. +.+......+...+.+.+..+.+..+.......
T Consensus 94 ~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 94 FDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD----PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168 (259)
T ss_dssp HHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc----cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 9999887554 66788888899999999999999999998643 344555555555666666666666655555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.09 E-value=4.7e-08 Score=89.48 Aligned_cols=182 Identities=16% Similarity=0.173 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008708 148 KNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLF 227 (557)
Q Consensus 148 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 227 (557)
++|..+|++.++..++.+...|...+....+.|+++.|..+|+++++. .......+|...+..+.+.|+++.|..+|
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~---~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH---hcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 444444544444322333444444444444555555555555554421 11111234445555555555555555555
Q ss_pred HHHHHcCCCCCHHHHH-HHhc--ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CC
Q 008708 228 ALMAERGVQQSTVTYN-SLMS--FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAG-VR 303 (557)
Q Consensus 228 ~~~~~~~~~~~~~~~~-~ll~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~ 303 (557)
+.+.+.+......... ..+. ..++.+.|..+|+.+... .+.+...|...+..+.+.|+.+.|..+|++..... ..
T Consensus 158 ~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 158 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 5544432111100000 0000 011222222222222221 12234445555555555555555555555554432 11
Q ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 304 P--THKAYNILLDAFAISGMVDQARTVFKCMR 333 (557)
Q Consensus 304 ~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 333 (557)
| ....|...+..-...|+.+.+..+++++.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 12344444444445555555555555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=8.6e-10 Score=102.78 Aligned_cols=171 Identities=8% Similarity=-0.019 Sum_probs=108.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 008708 277 LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASD 356 (557)
Q Consensus 277 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (557)
....+...+.+++|+..++.+++.. +-+...|+.+..++...|++++|...+...... .+ ....+...+...+.
T Consensus 150 ~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~~~l~~ 223 (334)
T d1dcea1 150 RFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV----LL-KELELVQNAFFTDP 223 (334)
T ss_dssp HHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH----HH-HHHHHHHHHHHHCS
T ss_pred HHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh----HH-HHHHHHHHHHHhcc
Confidence 3345556677777777777666553 345666667777777777666655444333321 00 11122333455566
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 008708 357 MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKE 436 (557)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 436 (557)
.+++...+....... +++...+..++..+...|+.++|...+.+..+.. +.+...|..++.++...|++++|+..+++
T Consensus 224 ~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ 301 (334)
T d1dcea1 224 NDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFST 301 (334)
T ss_dssp SCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 667777777766654 4555566667777777888888888888777543 33466777788888888888888888888
Q ss_pred HHhCCCCCCH-HHHHHHHHHHh
Q 008708 437 MESCGFPPDQ-KAKNILLSLAK 457 (557)
Q Consensus 437 m~~~~~~p~~-~~~~~l~~~~~ 457 (557)
+.+ +.|+. ..|..+...+.
T Consensus 302 ai~--ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 302 LKA--VDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHH--HCGGGHHHHHHHHHHHH
T ss_pred HHH--HCcccHHHHHHHHHHHh
Confidence 887 45643 45555555444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=5.7e-09 Score=93.05 Aligned_cols=199 Identities=13% Similarity=-0.015 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 272 VSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAY 351 (557)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (557)
.+|..+..+|.+.|++++|+..|++.++.. +-+..+|..+..+|.+.|++++|+..|+++.+.. +.+..++..+..+|
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence 466777888889999999999999888764 4567788888889999999999999999888754 33566788888888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC----h
Q 008708 352 VNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD----F 427 (557)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~----~ 427 (557)
...|++++|.+.|+...+.. +.+......+..++.+.+..+.+..+........ ++...+. ++..+..... .
T Consensus 116 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHH
Confidence 89999999999999888764 4456555555666666666666666655555432 2222222 2222221111 2
Q ss_pred hHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCC
Q 008708 428 DSAVVWYKEMESCGFPPD-QKAKNILLSLAKTADERNEANELLGNFNHPNNE 478 (557)
Q Consensus 428 ~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 478 (557)
+.+...+..... ..|+ ..++..+...+...|++++|...+++....++.
T Consensus 192 ~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 241 (259)
T d1xnfa_ 192 ERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 241 (259)
T ss_dssp HHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 222222221111 1222 245666788888899999999999888766554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.03 E-value=9e-10 Score=102.66 Aligned_cols=264 Identities=8% Similarity=0.003 Sum_probs=146.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH----------HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 008708 111 DFNKAEKVLSFMNKKGYAPSVVSHTALMEAY----------GRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEAN 180 (557)
Q Consensus 111 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~----------~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 180 (557)
..++|++++++..+.. |-+...|+..-..+ ...|++++|+.+++...+..+. +...|..+..++...+
T Consensus 44 ~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (334)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhc
Confidence 3467777777766653 22344554333222 2223356666666666655433 5555555555555444
Q ss_pred --CHHHHHHHHHHhHhccCCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHHHHHH
Q 008708 181 --KFKEAEEVFMTLLDEEKSPLKPDQKMFH-MMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYKEVSK 257 (557)
Q Consensus 181 --~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~ 257 (557)
++++|...+..+++.. +++...+. .....+...+.+++|+..++.+.+..
T Consensus 122 ~~~~~~a~~~~~~al~~~----~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~----------------------- 174 (334)
T d1dcea1 122 EPNWARELELCARFLEAD----ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN----------------------- 174 (334)
T ss_dssp SCCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-----------------------
T ss_pred cccHHHHHHHHHHHHhhC----chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-----------------------
Confidence 3566666666666432 23444433 23344555566666666665555431
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008708 258 IYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRC 337 (557)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 337 (557)
+-+...|..+..++.+.|++++|...+....+. .|. ...+...+...+..+++...+.......
T Consensus 175 ----------p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~- 238 (334)
T d1dcea1 175 ----------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR- 238 (334)
T ss_dssp ----------CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-
T ss_pred ----------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-
Confidence 225566666666677777666655444433321 011 1122233444555566666666665543
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHH
Q 008708 338 SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTT 416 (557)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ 416 (557)
+++...+..++..+...++..+|...+.+..... +.+..++..++.++...|++++|.+.|+++.+. .|+ ...|..
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~ 315 (334)
T d1dcea1 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDD 315 (334)
T ss_dssp CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHH
Confidence 3344455556666667777777777777766553 335566777777788888888888888887764 343 445555
Q ss_pred HHHHHH
Q 008708 417 IMDAYG 422 (557)
Q Consensus 417 l~~~~~ 422 (557)
+...+.
T Consensus 316 L~~~~~ 321 (334)
T d1dcea1 316 LRSKFL 321 (334)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 544443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.79 E-value=2.6e-07 Score=83.55 Aligned_cols=197 Identities=14% Similarity=0.020 Sum_probs=122.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHHHHH
Q 008708 277 LINAYGKARREEEALAVFEEMLDA----GVRP-THKAYNILLDAFAISGMVDQARTVFKCMRRD----RC-SPDICSYTT 346 (557)
Q Consensus 277 li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~ 346 (557)
....|...|++++|...|.++.+. +-++ -..+|..+..+|.+.|++++|...+++.... +. .....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 355677778888888888776542 1111 1246777778888888888888888765432 10 111344556
Q ss_pred HHHHHHH-cCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----cC-HHHH
Q 008708 347 MLSAYVN-ASDMEGAEKFFRRLKQD----GFVP-NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIK-----PN-QTIF 414 (557)
Q Consensus 347 li~~~~~-~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-----p~-~~~~ 414 (557)
+...|.. .|++++|++.|++..+. +.++ ...++..++..+...|++++|...|+++...... .. ...+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 6666644 58888888888876542 2111 1345777888888888888888888887764211 11 1233
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC------HHHHHHHHHHHhh--cCCHHHHHHHHHhcCCC
Q 008708 415 TTIMDAYGKNKDFDSAVVWYKEMESCGFPPD------QKAKNILLSLAKT--ADERNEANELLGNFNHP 475 (557)
Q Consensus 415 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~ 475 (557)
...+..+...|+++.|...++++.+. .|. ......++.++.. .+.+++|...++.+.+.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~--~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 44555666788888888888888763 222 1244555556554 34577787777666544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=6.3e-07 Score=75.07 Aligned_cols=142 Identities=15% Similarity=0.048 Sum_probs=102.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 313 LDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNL 392 (557)
Q Consensus 313 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 392 (557)
...+...|+++.|++.|.++. +|++.+|..+..+|...|++++|++.|++.++.+ +.+...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 345667788888888887643 5677778888888888888888888888888765 56777888888888888888
Q ss_pred HHHHHHHHHHHHCCC--------------CcC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 008708 393 EKMMEIYDKMRVNGI--------------KPN-QTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAK 457 (557)
Q Consensus 393 ~~a~~~~~~m~~~~~--------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 457 (557)
++|.+.|++.+.... .++ ..++..+..++.+.|++++|.+.++...+. .|+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~--~~~~----------- 153 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP----------- 153 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG-----------
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCc-----------
Confidence 888888888765310 111 355667777888999999999999888873 4442
Q ss_pred hcCCHHHHHHHHHhc
Q 008708 458 TADERNEANELLGNF 472 (557)
Q Consensus 458 ~~g~~~~a~~~~~~~ 472 (557)
..+..+.|...+.+.
T Consensus 154 ~~~~~~~Al~~~~~~ 168 (192)
T d1hh8a_ 154 RHSKIDKAMECVWKQ 168 (192)
T ss_dssp GGGHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHhh
Confidence 334455666655544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=9.9e-07 Score=67.06 Aligned_cols=91 Identities=15% Similarity=0.051 Sum_probs=69.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 008708 347 MLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKD 426 (557)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 426 (557)
-...+.+.|++++|+..|++.++.. |.+...|..+..+|...|++++|+..+.+.++.+ +.+...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 3556777788888888888777764 6677778888888888888888888888877654 4567777778888888888
Q ss_pred hhHHHHHHHHHHh
Q 008708 427 FDSAVVWYKEMES 439 (557)
Q Consensus 427 ~~~A~~~~~~m~~ 439 (557)
+++|+..+++.++
T Consensus 87 ~~~A~~~~~~a~~ 99 (117)
T d1elwa_ 87 FEEAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888876
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=2.8e-06 Score=70.99 Aligned_cols=127 Identities=13% Similarity=0.007 Sum_probs=100.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 278 INAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDM 357 (557)
Q Consensus 278 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 357 (557)
...+...|+++.|++.|.++ .+|+..+|..+..+|...|++++|+..|++.++.. +.++..|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 45677889999999888764 35777888889999999999999999999988765 44678888899999999999
Q ss_pred HHHHHHHHHHHhCCC--------------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 008708 358 EGAEKFFRRLKQDGF--------------VP-NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKP 409 (557)
Q Consensus 358 ~~A~~~~~~m~~~~~--------------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 409 (557)
++|+..|++...... ++ ...++..+..++.+.|++++|.+.+....+....+
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999999988765310 11 13566778889999999999999999988754333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.58 E-value=9e-07 Score=79.82 Aligned_cols=208 Identities=12% Similarity=0.035 Sum_probs=131.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----CCHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKK----GYAP-SVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPR-----PSALT 168 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~~ 168 (557)
|......|...|++++|.+.|.+..+. +-++ -..+|+.+..+|.+.|++++|++.+++....... ....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 444567888999999999999987652 1111 2457899999999999999999999987543111 12345
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHhHhccC-CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 008708 169 YQIILKLFVE-ANKFKEAEEVFMTLLDEEK-SPLKP-DQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSL 245 (557)
Q Consensus 169 ~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 245 (557)
+..+...|.. .|++++|++.+.++++... .+.++ -..++..++..+...|++++|+..|+++...........
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~---- 195 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ---- 195 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG----
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhh----
Confidence 5566666644 6999999999998865311 11111 134677889999999999999999998876532111110
Q ss_pred hcccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHHHH--
Q 008708 246 MSFETNYKEVSKIYDQMQRAGLQPD-VVSYALLINAYGKARREEEALAVFEEMLDAGVR-PT---HKAYNILLDAFAI-- 318 (557)
Q Consensus 246 l~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~---~~~~~~li~~~~~-- 318 (557)
.. ...+...+..+...|+++.|...+++..+.... ++ ......++.++..
T Consensus 196 -----------------------~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d 252 (290)
T d1qqea_ 196 -----------------------WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGD 252 (290)
T ss_dssp -----------------------GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTC
T ss_pred -----------------------hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcC
Confidence 01 112334445566778888888888877654211 11 1234445555543
Q ss_pred cCCHHHHHHHHHHHH
Q 008708 319 SGMVDQARTVFKCMR 333 (557)
Q Consensus 319 ~g~~~~A~~~~~~~~ 333 (557)
.+.+++|+..|+.+.
T Consensus 253 ~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 253 SEQLSEHCKEFDNFM 267 (290)
T ss_dssp TTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHh
Confidence 234666766665544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.3e-06 Score=64.91 Aligned_cols=91 Identities=13% Similarity=0.047 Sum_probs=56.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 008708 313 LDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNL 392 (557)
Q Consensus 313 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 392 (557)
...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..+....+.+ +.+...|..++.++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 345556666666666666665543 3355566666666666666666666666666554 55666666666666666666
Q ss_pred HHHHHHHHHHHHC
Q 008708 393 EKMMEIYDKMRVN 405 (557)
Q Consensus 393 ~~a~~~~~~m~~~ 405 (557)
++|+..|++..+.
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=2.4e-06 Score=69.07 Aligned_cols=119 Identities=18% Similarity=0.129 Sum_probs=86.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 008708 345 TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKN 424 (557)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 424 (557)
......|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|+++++.. +.+...|..++.++...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHc
Confidence 334567788888888888888888875 6678888888888888899999998888888753 44567888888888888
Q ss_pred CChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH--hhcCCHHHHHH
Q 008708 425 KDFDSAVVWYKEMESCGFPPD-QKAKNILLSLA--KTADERNEANE 467 (557)
Q Consensus 425 g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~--~~~g~~~~a~~ 467 (557)
|++++|...+++.... .|+ ...+..+..+. ...+.+++|..
T Consensus 92 g~~~eA~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 92 GKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp TCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998888888873 444 44444443332 23334444443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=1.6e-06 Score=70.10 Aligned_cols=122 Identities=17% Similarity=0.057 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 008708 99 FLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVE 178 (557)
Q Consensus 99 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 178 (557)
+......|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++.++..+. +..+|..+..++..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHH
Confidence 3445677889999999999999998875 457889999999999999999999999999887544 77888999999999
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHH--HHHcCCHHHHHHH
Q 008708 179 ANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYM--YKKAGGYEKARKL 226 (557)
Q Consensus 179 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~ 226 (557)
.|++++|...+++++... +.+...+..+..+ ....+.+++|...
T Consensus 91 ~g~~~eA~~~~~~a~~~~----p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVK----PHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999998642 3344444444333 2333445555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.49 E-value=0.00031 Score=61.51 Aligned_cols=49 Identities=14% Similarity=-0.034 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 008708 355 SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNG 406 (557)
Q Consensus 355 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 406 (557)
.++++|+..|+...+.| ++..+..|...|.+ ..+.++|.++|++..+.|
T Consensus 196 ~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 196 KNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 34555555555555443 23344444444443 224555555555555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.45 E-value=1.5e-06 Score=73.42 Aligned_cols=99 Identities=11% Similarity=0.023 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 304 PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLI 383 (557)
Q Consensus 304 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 383 (557)
|+...+......|.+.|++++|+..|++.+... +.++..|+.+..+|.+.|++++|+..|+..++.. |-+..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 556666666777777777777777777766553 4466677777777777777777777777776653 44566777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 008708 384 KGYAKVNNLEKMMEIYDKMRV 404 (557)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~m~~ 404 (557)
.+|...|++++|...|+++.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777777664
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.41 E-value=2.7e-06 Score=71.78 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHH
Q 008708 129 PSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFH 208 (557)
Q Consensus 129 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 208 (557)
|+...+......|.+.|++++|+..|.+.+...+. ++..|..+..+|.+.|++++|+..|.++++.. +-+..+|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~----p~~~~a~~ 76 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD----GQSVKAHF 76 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC----TTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC----CCcHHHHH
Confidence 45555555666666666666666666666555433 55666666666666666666666666665321 23455666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 209 MMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 209 ~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
.++.+|...|++++|+..|+++.+
T Consensus 77 ~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 77 FLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666666666543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.38 E-value=0.00057 Score=59.75 Aligned_cols=223 Identities=14% Similarity=0.062 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 008708 166 ALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKK----AGGYEKARKLFALMAERGVQQSTVT 241 (557)
Q Consensus 166 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 241 (557)
+..+..|...+...+++++|++.|++..+. -+...+..|...|.. ..+...|...+......+
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~------- 68 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------- 68 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-------
Confidence 445555555666666677777766666542 234445555555554 345555555555544432
Q ss_pred HHHHhcccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 008708 242 YNSLMSFETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGK----ARREEEALAVFEEMLDAGVRPTHKAYNILLDAFA 317 (557)
Q Consensus 242 ~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 317 (557)
+......+...+.. ..+.+.|...++...+.|. ......+...+.
T Consensus 69 ----------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~ 117 (265)
T d1ouva_ 69 ----------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYH 117 (265)
T ss_dssp ----------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred ----------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhccccc
Confidence 22223333333322 3455666666666665542 222222333333
Q ss_pred H----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 008708 318 I----SGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN----ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK- 388 (557)
Q Consensus 318 ~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~- 388 (557)
. ......+...+...... .+...+..+...|.. ..+...+...++...+.| +......+...|..
T Consensus 118 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g 191 (265)
T d1ouva_ 118 DGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHG 191 (265)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred CCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccC
Confidence 2 33456666666665553 355666666666664 356677777777777654 56666666666665
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 008708 389 ---VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK----NKDFDSAVVWYKEMESCG 441 (557)
Q Consensus 389 ---~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 441 (557)
..++++|..+|++..+.| ++..+..|...|.+ ..+.++|..+|++..+.|
T Consensus 192 ~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 192 EGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp CSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 567999999999988876 45666677777764 447888999999888766
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1.2e-06 Score=66.84 Aligned_cols=100 Identities=15% Similarity=0.183 Sum_probs=69.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCcC-HHHHHHHHHH
Q 008708 345 TTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNN---LEKMMEIYDKMRVNGIKPN-QTIFTTIMDA 420 (557)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~ 420 (557)
..+++.+...+++++|.+.|++....+ +.+..++..+..++.+.++ +++|+.+|+++...+..|+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345667777778888888888777765 6677777777777776443 4467777877776543333 2356677778
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHH
Q 008708 421 YGKNKDFDSAVVWYKEMESCGFPPDQK 447 (557)
Q Consensus 421 ~~~~g~~~~A~~~~~~m~~~~~~p~~~ 447 (557)
|.+.|++++|+..|+++++ +.|+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCH
Confidence 8888888888888888877 456544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.32 E-value=2.7e-06 Score=63.93 Aligned_cols=91 Identities=8% Similarity=-0.028 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 100 LMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEA 179 (557)
Q Consensus 100 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 179 (557)
..+...+.+.|++++|...|++..... |.+..+|..+..++.+.|++++|+..|++.++..+. +..++..+...|...
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHC
Confidence 345566666777777777777766654 235666777777777777777777777776665433 566666666666677
Q ss_pred CCHHHHHHHHHHh
Q 008708 180 NKFKEAEEVFMTL 192 (557)
Q Consensus 180 g~~~~A~~~~~~~ 192 (557)
|++++|.+.+++.
T Consensus 98 g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 98 HNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 7777776666654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.29 E-value=4e-06 Score=62.97 Aligned_cols=85 Identities=8% Similarity=0.069 Sum_probs=35.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhH
Q 008708 350 AYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDS 429 (557)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 429 (557)
.+.+.|++++|+..|++..... |-+...|..++.++.+.|++++|+..|++.++.. +.+...|..+..+|...|++++
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHHH
Confidence 3344444444444444444332 2234444444444444444444444444444321 2223444444444444444444
Q ss_pred HHHHHHH
Q 008708 430 AVVWYKE 436 (557)
Q Consensus 430 A~~~~~~ 436 (557)
|++.+++
T Consensus 103 A~~~l~~ 109 (112)
T d1hxia_ 103 ALASLRA 109 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=8.2e-06 Score=62.02 Aligned_cols=95 Identities=12% Similarity=0.053 Sum_probs=66.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 008708 100 LMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGR---YKNAEAIFRRMQSSGPRPS-ALTYQIILKL 175 (557)
Q Consensus 100 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~ 175 (557)
..|++.+...+++++|.+.|++....+ +.++.++..+..++.+.++ +++|+.+|+++...++.|+ ..++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 356677777778888888888877765 4567777777777776544 4457777877766544433 2356677777
Q ss_pred HHHcCCHHHHHHHHHHhHhc
Q 008708 176 FVEANKFKEAEEVFMTLLDE 195 (557)
Q Consensus 176 ~~~~g~~~~A~~~~~~~~~~ 195 (557)
|.+.|++++|++.|+++++.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 78888888888888888753
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=2e-05 Score=60.69 Aligned_cols=105 Identities=14% Similarity=0.170 Sum_probs=74.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CC---cC-HHHHHHH
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNG--IK---PN-QTIFTTI 417 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~---p~-~~~~~~l 417 (557)
+..+...+.+.|++++|+..|.+.++.+ |.+...+..+..+|.+.|++++|+..++++++.. .. +. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4456677788888888888888887765 5677788888888888888888888888877521 00 01 2466677
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 008708 418 MDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNI 451 (557)
Q Consensus 418 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 451 (557)
...+...+++++|+.+|++.+. ..++......
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~ 117 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA--EHRTPDVLKK 117 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh--cCCCHHHHHH
Confidence 7778888888888888888776 3455544433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=3.3e-05 Score=62.77 Aligned_cols=76 Identities=17% Similarity=0.102 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 008708 378 TYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP-DQKAKNILLSLA 456 (557)
Q Consensus 378 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~ 456 (557)
+|+.+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++++ +.| +......+..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 45667777777888888888887777653 33577777777778888888888888888777 344 344444444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.09 E-value=6.2e-05 Score=59.86 Aligned_cols=68 Identities=16% Similarity=0.023 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 008708 377 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQK 447 (557)
Q Consensus 377 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 447 (557)
.+|..+..+|.+.|++++|++.++++++.. +.+..+|..++.++...|++++|+..|++.++ +.|+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~ 135 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNL 135 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCH
Confidence 466778888889999999999999888764 45678888899999999999999999999888 456543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=7.5e-05 Score=60.58 Aligned_cols=131 Identities=10% Similarity=0.007 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 272 VSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAY 351 (557)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (557)
..+......+.+.|++++|+..|.+.+..-..... ....-......+ ...+|+.+..+|
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~nla~~y 72 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQAL-------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchh-------HHHHHHHHHHHH
Confidence 34455566777777777777777776653110000 000000000000 123567778888
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 008708 352 VNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNK 425 (557)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 425 (557)
.+.|++++|+..++..+... |.+...+..++.+|...|++++|...|+++.+.. +.+......+..+..+.+
T Consensus 73 ~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHH
T ss_pred Hhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 89999999999999888875 5688888999999999999999999999988753 235555555555444333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.03 E-value=0.0041 Score=55.59 Aligned_cols=126 Identities=15% Similarity=0.139 Sum_probs=67.3
Q ss_pred HHhhhccchHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 008708 68 VRLKQLKKWNVVSEVLEWLRIQSWWDFNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRY 147 (557)
Q Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 147 (557)
..|...|.++.|..++..+ ..|..++.++.+.++++.|.+++.+. .+..+|..+...+.+....
T Consensus 22 ~~c~~~~lye~A~~lY~~~----------~d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~ 85 (336)
T d1b89a_ 22 DRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEF 85 (336)
T ss_dssp -------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHhC----------CCHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHH
Confidence 3444556666666655321 24566666666667766666665433 1556666666666665554
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcC
Q 008708 148 KNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAG 218 (557)
Q Consensus 148 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 218 (557)
..+ .+.......++.....++..|-..|.+++...+++..+.. -.++...++.++..|++.+
T Consensus 86 ~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~----~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 86 RLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL----ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----TTCCHHHHHHHHHHHHTTC
T ss_pred HHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC----CccchHHHHHHHHHHHHhC
Confidence 432 1222223345555556666666677777777666665421 2345556666666666543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=4.1e-05 Score=58.80 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=28.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 008708 101 MLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQS 159 (557)
Q Consensus 101 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 159 (557)
.+...|.+.|++++|++.|++.++.+ |.+..+|..+..+|.+.|++++|++.++++++
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 34445555555555555555554443 22444555555555555555555555554443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.96 E-value=6.4e-05 Score=60.96 Aligned_cols=84 Identities=12% Similarity=0.111 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 008708 375 NVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPP-DQKAKNILL 453 (557)
Q Consensus 375 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~ 453 (557)
....|..+..++.+.|++++|+..+.++++.. +.+...|..+..++.+.|++++|+..|+++++. .| +......+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l~ 152 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 44567778888899999999999999988764 446788888999999999999999999999883 44 445555555
Q ss_pred HHHhhcCC
Q 008708 454 SLAKTADE 461 (557)
Q Consensus 454 ~~~~~~g~ 461 (557)
.+..+...
T Consensus 153 ~~~~~l~~ 160 (169)
T d1ihga1 153 KVKQKIKA 160 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=3.5e-06 Score=82.08 Aligned_cols=79 Identities=11% Similarity=-0.024 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 273 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV 352 (557)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 352 (557)
++..+...+...|++++|...|.+..+.. +.+...|+.|...+...|+..+|+..|.+..... +|-+.++..|...+.
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 45666777777777777777777776653 3345677777777777777777777777776544 456666666666554
Q ss_pred H
Q 008708 353 N 353 (557)
Q Consensus 353 ~ 353 (557)
+
T Consensus 232 ~ 232 (497)
T d1ya0a1 232 K 232 (497)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=2.3e-06 Score=83.50 Aligned_cols=226 Identities=8% Similarity=0.013 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHH
Q 008708 149 NAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQ-KMFHMMIYMYKKAGGYEKARKLF 227 (557)
Q Consensus 149 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 227 (557)
+|.+.|++..+..+. ...++..+..++...|++++| |++++.. .|+. ..++.....+ ...+..+.+.+
T Consensus 4 eA~q~~~qA~~l~p~-~a~a~~~la~~~~~~~~l~ea---ye~~i~~-----dp~~a~~~~~e~~Lw--~~~y~~~ie~~ 72 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD-MTDSKLGPAEVWTSRQALQDL---YQKMLVT-----DLEYALDKKVEQDLW--NHAFKNQITTL 72 (497)
T ss_dssp HHHHHHHHHHHHHGG-GTCSSSCSSSSHHHHHHHHHH---HHHHHHH-----CHHHHHHHTHHHHHH--HHHTHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-CHHHHhhHHHHHHHHchHHHH---HHHHHHc-----ChhhHHHHhHHHHHH--HHHHHHHHHHH
Confidence 677888888774322 244566677778888888765 6666532 2221 1122211111 11244566667
Q ss_pred HHHHHcCCCCCHHHHHH----Hhc-ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008708 228 ALMAERGVQQSTVTYNS----LMS-FETNYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGV 302 (557)
Q Consensus 228 ~~~~~~~~~~~~~~~~~----ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 302 (557)
+...+....++...... .+. +.+.++.+...+....+.. .++...+..+...+.+.|+.+.|...+.......
T Consensus 73 r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~- 150 (497)
T d1ya0a1 73 QGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI- 150 (497)
T ss_dssp HHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH-
T ss_pred HHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence 66665443333322211 111 2344445544444433332 2345667788888889999999998888776431
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 303 RPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTL 382 (557)
Q Consensus 303 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 382 (557)
...++..+...+...|++++|...|++..+.. +.+..+|+.+...+...|+..+|...|.+..... +|...++..|
T Consensus 151 --~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL 226 (497)
T d1ya0a1 151 --CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNL 226 (497)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHH
T ss_pred --HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence 23567788889999999999999999988764 4466889999999999999999999999998876 7788888888
Q ss_pred HHHHHHcCC
Q 008708 383 IKGYAKVNN 391 (557)
Q Consensus 383 ~~~~~~~g~ 391 (557)
...+.+..+
T Consensus 227 ~~~~~~~~~ 235 (497)
T d1ya0a1 227 QKALSKALE 235 (497)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhhh
Confidence 888765443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.92 E-value=9.3e-05 Score=59.98 Aligned_cols=128 Identities=10% Similarity=0.107 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008708 273 SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYV 352 (557)
Q Consensus 273 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 352 (557)
.+......+.+.|++++|+..|.++++. ............... +. +.....|..+..++.
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~~----~~----~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGAK----LQ----PVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHGG----GH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHHH----hC----hhhHHHHHHHHHHHH
Confidence 3455666777888888888888776531 000001111111100 00 124456777888899
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008708 353 NASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYG 422 (557)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 422 (557)
+.|++++|+..++++++.. +.+...|..++.++.+.|++++|...|+++++.. +.+......+..+..
T Consensus 89 ~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQ 156 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 9999999999999998875 6788889999999999999999999999998753 335555555554443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.90 E-value=0.00038 Score=55.07 Aligned_cols=121 Identities=17% Similarity=0.063 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 008708 272 VSYALLINAYGKARREEEALAVFEEMLDAGVR----PTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTM 347 (557)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 347 (557)
..+......+.+.|++.+|+..|.+.+..-.. ++..... ... .....+|+.+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~--------------------~~~----~~~~~~~~Nl 73 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD--------------------KKK----NIEISCNLNL 73 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH--------------------HHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH--------------------hhh----hHHHHHHhhH
Confidence 34555667777888888888888777653110 1111000 000 0023467778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIM 418 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 418 (557)
..+|.+.|++++|++.++.+++.+ |.+..+|..++.++...|++++|...|++..+.. +-+..+...+-
T Consensus 74 a~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l~ 142 (153)
T d2fbna1 74 ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYE 142 (153)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 888999999999999999988875 6688899999999999999999999999988753 22344444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.84 E-value=0.00018 Score=58.03 Aligned_cols=61 Identities=10% Similarity=0.030 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 344 YTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
|+.+..+|.+.|++++|+..++..+... |.+..+|..++.++...|++++|...|+++++.
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555555566666666665555543 445555555555556666666666666555553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.81 E-value=0.00031 Score=56.66 Aligned_cols=129 Identities=12% Similarity=-0.013 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008708 272 VSYALLINAYGKARREEEALAVFEEMLDA---GVRP-----------THKAYNILLDAFAISGMVDQARTVFKCMRRDRC 337 (557)
Q Consensus 272 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 337 (557)
..+......+.+.|++.+|+..|.+.+.. .... ...+|+.+..+|.+.|++++|+..++..+...
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~- 94 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 94 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-
Confidence 34556677888999999999999887642 1111 11346678888999999999999999998764
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHH
Q 008708 338 SPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLE-KMMEIYDKM 402 (557)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 402 (557)
+.+..+|..+..++...|++++|...|+++.... |.+......+..+..+.+... ...++|..|
T Consensus 95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAKEHNERDRRTYANM 159 (168)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5688899999999999999999999999999875 566666666655554444332 233444444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.71 E-value=0.00067 Score=55.06 Aligned_cols=74 Identities=9% Similarity=0.207 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCCCCHHHHHH
Q 008708 377 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEME-----SCGFPPDQKAKNI 451 (557)
Q Consensus 377 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~p~~~~~~~ 451 (557)
..+..++.++...|++++|+..++++++.. +-+...|..++.+|.+.|+..+|++.|+++. +.|+.|...+...
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l 146 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 146 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 456778888899999999999999988753 5568889999999999999999999998874 3688888765443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.66 E-value=0.017 Score=51.42 Aligned_cols=277 Identities=13% Similarity=0.162 Sum_probs=156.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008708 94 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIIL 173 (557)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 173 (557)
+|...-..+++.|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+.+. -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 4556666788889999999999999976653 677888889999999999988764 2677888888
Q ss_pred HHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccCCHH
Q 008708 174 KLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFETNYK 253 (557)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 253 (557)
..+.+......|.-. ......+......++..|-..|.+++...+++..... -..+...++.++..+.+++
T Consensus 77 ~~l~~~~e~~la~i~--------~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 77 FACVDGKEFRLAQMC--------GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHTTCHHHHHHT--------TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCcHHHHHHHH--------HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 888888777554221 1223345566678899999999999999999987643 2345556666665543332
Q ss_pred HHHHHHHHHHHCCCCCCHH----------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 008708 254 EVSKIYDQMQRAGLQPDVV----------SYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVD 323 (557)
Q Consensus 254 ~a~~~~~~~~~~~~~~~~~----------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 323 (557)
. .++.+.+.......|.. .|..++..|.+.|.++.|..+. .+. .++..-....+..+.+..+.+
T Consensus 148 ~-~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e 221 (336)
T d1b89a_ 148 P-QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVE 221 (336)
T ss_dssp H-HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTH
T ss_pred h-HHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChH
Confidence 2 23444444322122221 1344555555666666555442 222 344444455667778888877
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008708 324 QARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMR 403 (557)
Q Consensus 324 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 403 (557)
...++.....+. .| ...+.++......-+..+..+.+ .+.+++.....+++...
T Consensus 222 ~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~----------------------~k~~~l~li~p~Le~v~ 275 (336)
T d1b89a_ 222 LYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYF----------------------SKVKQLPLVKPYLRSVQ 275 (336)
T ss_dssp HHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHH----------------------HHTTCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHH----------------------HhcCCcHHHHHHHHHHH
Confidence 766666655542 23 23344444444444444433333 33444445555555544
Q ss_pred HCCCCcCHHHHHHHHHHHHhcCChhH
Q 008708 404 VNGIKPNQTIFTTIMDAYGKNKDFDS 429 (557)
Q Consensus 404 ~~~~~p~~~~~~~l~~~~~~~g~~~~ 429 (557)
+.+ +....+++...|...++++.
T Consensus 276 ~~n---~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 276 NHN---NKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp TTC---CHHHHHHHHHHHHHTTCHHH
T ss_pred HcC---hHHHHHHHHHHHhCcchhHH
Confidence 433 34566666677777766544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.60 E-value=0.0002 Score=56.09 Aligned_cols=32 Identities=9% Similarity=-0.048 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 008708 357 MEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV 389 (557)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 389 (557)
+++|+..|+++++.. |.+..+|..++.+|...
T Consensus 57 ~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 57 IQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHc
Confidence 345555555555543 44455555555555443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.59 E-value=3.6e-05 Score=67.26 Aligned_cols=126 Identities=9% Similarity=0.038 Sum_probs=86.8
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCChhH
Q 008708 351 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPN-QTIFTTIMDAYGKNKDFDS 429 (557)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 429 (557)
..+.|++++|+..+++.++.. |.|...+..++..++..|++++|...|+...+. .|+ ...+..+..++...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHH
Confidence 346799999999999999886 778899999999999999999999999999875 344 5555555555544444333
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCCCC
Q 008708 430 AVVWYKEMESCGFPPD-QKAKNILLSLAKTADERNEANELLGNFNHPNNEPG 480 (557)
Q Consensus 430 A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 480 (557)
+..-.......+ +|+ ...+...+..+...|+.++|.++++++.+..+..+
T Consensus 83 a~~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 83 FAQGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 133 (264)
T ss_dssp HTTSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 322211111111 232 23444556678889999999999988775554433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.57 E-value=0.0012 Score=53.39 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008708 270 DVVSYALLINAYGKARREEEALAVFEEM 297 (557)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 297 (557)
+...|..++.+|.+.|+..+|++.|+++
T Consensus 100 ~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 100 REPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4555555556666666666665555554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.51 E-value=0.00014 Score=63.30 Aligned_cols=124 Identities=13% Similarity=0.050 Sum_probs=83.6
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 106 YGKQGDFNKAEKVLSFMNKKGYAPSVVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSALTYQIILKLFVEANKFKEA 185 (557)
Q Consensus 106 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A 185 (557)
..+.|++++|+..+++.++.. |.+...+..++..|+..|++++|...|+...+..+. +...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHH
Confidence 456799999999999998875 557899999999999999999999999999886433 344444444444333333332
Q ss_pred HHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008708 186 EEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERG 234 (557)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 234 (557)
..-..... ....+++...+...+..+...|+.++|...++++.+..
T Consensus 84 ~~~~~~~~---~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAK---VLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEE---CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhh---cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 22111110 11112233444556677888899999999999887653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.51 E-value=0.00014 Score=57.02 Aligned_cols=102 Identities=10% Similarity=0.051 Sum_probs=73.5
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008708 351 YVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKV----------NNLEKMMEIYDKMRVNGIKPNQTIFTTIMDA 420 (557)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 420 (557)
|-+.+.+++|...|+...+.. |.+..++..+..+|... +.+++|+..|+++++.. +.+..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 345556777777777777665 66677777777776643 44678999999999754 4468889999988
Q ss_pred HHhcCC-----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 008708 421 YGKNKD-----------FDSAVVWYKEMESCGFPPDQKAKNILLSLA 456 (557)
Q Consensus 421 ~~~~g~-----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 456 (557)
|...|+ +++|.+.|+++++ +.|+...+..-+..+
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~ 129 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 129 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH
Confidence 876553 6889999999998 678776665555444
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.31 E-value=0.0011 Score=52.42 Aligned_cols=100 Identities=20% Similarity=0.125 Sum_probs=64.2
Q ss_pred HHHHH--HHHHHhcCChHHHHHHHHHHHhCCCC-C----------CHHHHHHHHHHHHHcCCHHHHHHHHHHhHhccC--
Q 008708 133 SHTAL--MEAYGRGGRYKNAEAIFRRMQSSGPR-P----------SALTYQIILKLFVEANKFKEAEEVFMTLLDEEK-- 197 (557)
Q Consensus 133 ~~~~l--i~~~~~~g~~~~A~~~~~~m~~~~~~-~----------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-- 197 (557)
+|..+ ...+...|++++|+..|++.+..... | ...+|+.+..+|.+.|++++|...++..+....
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 33445567777777777766542211 1 135677777788888888888887777764210
Q ss_pred CCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008708 198 SPLKPD-----QKMFHMMIYMYKKAGGYEKARKLFALMAE 232 (557)
Q Consensus 198 ~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 232 (557)
....++ ..+++.+..+|...|++++|+..|++..+
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 23567788999999999999999988765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.22 E-value=0.0038 Score=49.16 Aligned_cols=92 Identities=13% Similarity=0.097 Sum_probs=60.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC-CC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCcC-
Q 008708 348 LSAYVNASDMEGAEKFFRRLKQDGF-VP----------NVITYGTLIKGYAKVNNLEKMMEIYDKMRVN-----GIKPN- 410 (557)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~-~p----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~~~p~- 410 (557)
...+...|++++|+..|++.++... .| ....|+.+..+|...|++++|...+++.++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3345566777777777777654210 11 1356777888888888888888888877641 11222
Q ss_pred ----HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 411 ----QTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 411 ----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
...+..+..+|...|++++|+..|+++++
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23466677888888888888888888764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=0.001 Score=47.38 Aligned_cols=78 Identities=13% Similarity=0.044 Sum_probs=53.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 008708 94 FNEMDFLMLITAYGKQGDFNKAEKVLSFMNKKG-----YAPS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSSGPRPSAL 167 (557)
Q Consensus 94 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-----~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 167 (557)
++...+..+...+.+.|++++|+..|++..+.. ..++ ..+++.+..++.+.|++++|+..++++++..|. +..
T Consensus 3 Lsaddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~ 81 (95)
T d1tjca_ 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQR 81 (95)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHH
Confidence 456677788888888888888888888776431 1112 457777888888888888888888887776443 444
Q ss_pred HHHHH
Q 008708 168 TYQII 172 (557)
Q Consensus 168 ~~~~l 172 (557)
++..+
T Consensus 82 a~~Nl 86 (95)
T d1tjca_ 82 ANGNL 86 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.0076 Score=42.59 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHhccCC--CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008708 170 QIILKLFVEANKFKEAEEVFMTLLDEEKS--PLKPD-QKMFHMMIYMYKKAGGYEKARKLFALMAER 233 (557)
Q Consensus 170 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 233 (557)
-.+...+.+.|++++|...|+++++.... ...++ ..+++.|..+|.+.|++++|+..++++++.
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 34455555555555555555555432111 11111 345566666666666666666666666554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.53 E-value=0.043 Score=41.35 Aligned_cols=81 Identities=14% Similarity=0.008 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCC
Q 008708 355 SDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGK----NKD 426 (557)
Q Consensus 355 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~ 426 (557)
.+.++|++++++..+.| +......|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 34555555555555544 33334444444433 234566666666666554 23333334444433 345
Q ss_pred hhHHHHHHHHHHhCC
Q 008708 427 FDSAVVWYKEMESCG 441 (557)
Q Consensus 427 ~~~A~~~~~~m~~~~ 441 (557)
.++|..+|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 556666666665544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.29 E-value=0.082 Score=39.67 Aligned_cols=110 Identities=10% Similarity=-0.020 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 008708 286 REEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVN----ASDMEGAE 361 (557)
Q Consensus 286 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 361 (557)
++++|+.+|.+..+.|. ......|. .....+.++|..++++..+.+ ++.....|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 44555666665555442 11111221 122345666666666666554 44445555555543 34567777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 008708 362 KFFRRLKQDGFVPNVITYGTLIKGYAK----VNNLEKMMEIYDKMRVNG 406 (557)
Q Consensus 362 ~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 406 (557)
++|++..+.| ++.....|...|.. ..+.++|.++|++..+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 7777777665 34445555555554 346777777777777665
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.65 E-value=0.23 Score=35.79 Aligned_cols=65 Identities=17% Similarity=0.097 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 008708 377 ITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGF 442 (557)
Q Consensus 377 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 442 (557)
..+...++....+|+-+...++++.+.+.+ +|++...-.+..+|.+.|...++-+++.++-+.|+
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 334444455555555555555555544432 45555555555555555555555555555555443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.12 E-value=0.36 Score=34.76 Aligned_cols=139 Identities=10% Similarity=0.085 Sum_probs=79.8
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008708 317 AISGMVDQARTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMM 396 (557)
Q Consensus 317 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 396 (557)
.-.|.+++..++..+.... .+..-||.+|--....-+-+-..+.++.+-+. .| ....++.....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~vv 76 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 76 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHHH
Confidence 4456666666666666542 24455565655555555555555555443221 11 11233343333
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC
Q 008708 397 EIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNHPN 476 (557)
Q Consensus 397 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 476 (557)
..+-.+ .-+...++..++.+..+|+-+.-.++++.+.+.+ +|++...-.+..+|.+.|...++.+++.++-+.+
T Consensus 77 ~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 333222 1244556666777777777777777777766644 6777777777777888888777777777665544
Q ss_pred C
Q 008708 477 N 477 (557)
Q Consensus 477 ~ 477 (557)
.
T Consensus 151 ~ 151 (161)
T d1wy6a1 151 E 151 (161)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.97 E-value=2.3 Score=39.06 Aligned_cols=203 Identities=6% Similarity=-0.066 Sum_probs=118.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 008708 250 TNYKEVSKIYDQMQRAGLQPDVVSYALLI----NAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQA 325 (557)
Q Consensus 250 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 325 (557)
.+.+.+..++......... +...+..+- ......+..+.+..++......+ .+.......+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence 4566677777666554322 222222222 22233455677777777666543 3444444455555667788888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 008708 326 RTVFKCMRRDRCSPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVN 405 (557)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 405 (557)
...+..|.... .....-..-+..++...|+.+.|...|..+.. .++ -|..|. + .+.|..-. +...
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LA-a-~~Lg~~~~-------~~~~ 369 (450)
T d1qsaa1 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVA-A-QRIGEEYE-------LKID 369 (450)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHH-H-HHTTCCCC-------CCCC
T ss_pred HHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHH-H-HHcCCCCC-------CCcC
Confidence 88887765321 22344455667788888888888888887763 233 233222 1 22232100 0000
Q ss_pred CC--CcC-HHH---HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 008708 406 GI--KPN-QTI---FTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFN 473 (557)
Q Consensus 406 ~~--~p~-~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 473 (557)
.+ .+. ... -..-+..+...|....|...+..+... .+......+.....+.|.++.|+....+..
T Consensus 370 ~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 00 000 000 112345677899999999999988753 356677788899999999999999988764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.64 E-value=0.92 Score=32.80 Aligned_cols=71 Identities=8% Similarity=0.048 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 008708 374 PNVITYGTLIKGYAKVN---NLEKMMEIYDKMRVNGIKPNQ-TIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQK 447 (557)
Q Consensus 374 p~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 447 (557)
|...|--....++.+.. +.++++.+++...+.+ +.+. ..+-.+.-+|.+.|++++|..+++.+++ +.|+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~ 107 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 107 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcH
Confidence 44444444455555443 3456677776666532 2232 4555556667777777777777777776 455543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.46 E-value=1.1 Score=32.39 Aligned_cols=64 Identities=14% Similarity=0.003 Sum_probs=33.2
Q ss_pred HhhHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 008708 96 EMDFLMLITAYGKQ---GDFNKAEKVLSFMNKKGYAPS-VVSHTALMEAYGRGGRYKNAEAIFRRMQSS 160 (557)
Q Consensus 96 ~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 160 (557)
..+-....-++.+. .++.+++.+|+.+...+ +.+ ...+..|.-+|.+.|++++|...++.+++.
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 33333444444433 23345666666665432 112 345555556666666666666666666654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=89.82 E-value=7.1 Score=35.55 Aligned_cols=265 Identities=12% Similarity=0.045 Sum_probs=138.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHhccCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHhcccC
Q 008708 171 IILKLFVEANKFKEAEEVFMTLLDEEKSPLKPDQKMFHMMIYMYKKAGGYEKARKLFALMAERGVQQSTVTYNSLMSFET 250 (557)
Q Consensus 171 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 250 (557)
..+..+.+.+++......+ ...+.+...-...+.+....|+.+.|...+..+-..|..
T Consensus 77 ~~l~~L~~~~~w~~~~~~~--------~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-------------- 134 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFS--------PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-------------- 134 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHC--------CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC--------------
T ss_pred HHHHHHHhccCHHHHHHhc--------cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--------------
Confidence 3445666677766544322 122445555556677777778887777766655443321
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008708 251 NYKEVSKIYDQMQRAGLQPDVVSYALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFK 330 (557)
Q Consensus 251 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 330 (557)
..+....++..+.+.|. .+...+-.-+......|+...|..+...+.. .........+........+..
T Consensus 135 ~p~~c~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~----~~~~~~~a~~~l~~~p~~~~~------ 203 (450)
T d1qsaa1 135 QPNACDKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPA----DYQTIASAIISLANNPNTVLT------ 203 (450)
T ss_dssp CCTHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG----GGHHHHHHHHHHHHCGGGHHH------
T ss_pred CchHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCCh----hHHHHHHHHHHHHhChHhHHH------
Confidence 12233445555555443 3455555566666677787777776654321 122233333333322222211
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHH
Q 008708 331 CMRRDRCSPDICSYTTMLSAYVN--ASDMEGAEKFFRRLKQDGFVPNVITYGTLIKGY----AKVNNLEKMMEIYDKMRV 404 (557)
Q Consensus 331 ~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~----~~~g~~~~a~~~~~~m~~ 404 (557)
..... .++......+..++.+ ..+.+.|..++....... ..+..-...+-... ...+..+.+...+.....
T Consensus 204 ~~~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 280 (450)
T d1qsaa1 204 FARTT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM 280 (450)
T ss_dssp HHHHS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH
T ss_pred HHhcC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcc
Confidence 11111 2233333333333333 246777777777765532 22332222222222 234556677777766665
Q ss_pred CCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhcCC
Q 008708 405 NGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMESCGFPPDQKAKNILLSLAKTADERNEANELLGNFNH 474 (557)
Q Consensus 405 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 474 (557)
.+ .+.......+....+.+++..+...+..|... ......-..-+..++...|+.+.|...+..+..
T Consensus 281 ~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 281 RS--QSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp TC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 43 34444444455555677888888888776432 112234445566778888888888888887653
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.43 E-value=1.8 Score=29.39 Aligned_cols=46 Identities=17% Similarity=0.246 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 008708 394 KMMEIYDKMRVNGIKPNQTIFTTIMDAYGKNKDFDSAVVWYKEMES 439 (557)
Q Consensus 394 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 439 (557)
++.+-++.+...++.|.+.+..+.+.+|.+.+++..|.++++-...
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444445555555666666666666666666666666666665543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.45 E-value=1.9 Score=29.21 Aligned_cols=63 Identities=14% Similarity=0.280 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008708 356 DMEGAEKFFRRLKQDGFVPNVITYGTLIKGYAKVNNLEKMMEIYDKMRVNGIKPNQTIFTTIMD 419 (557)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 419 (557)
+.-++.+-++.+....+.|++....+-+.+|.+..++..|.++|+-.+.+ +.++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence 34455556666666667777777777777777777777777777776643 2233445555443
|